From 2956f5cdba18c56da3f7071867b2eb01597e335f Mon Sep 17 00:00:00 2001 From: Ramya Madupuri Date: Wed, 27 Dec 2023 15:39:03 -0500 Subject: [PATCH] data fixes --- public/bladder_msk_2023/meta_study.txt | 2 +- public/bm_nsclc_mskcc_2023/data_timeline_surgery.txt | 2 +- public/cervix_msk_2023/data_clinical_patient.txt | 4 ++-- public/egc_msk_2023/LICENSE | 1 + public/egc_msk_2023/Readme.txt | 1 + public/egc_msk_2023/data_clinical_patient.txt | 4 ++-- public/egc_msk_2023/data_clinical_sample.txt | 4 ++-- public/egc_msk_2023/data_sv.txt | 4 ++-- public/egc_msk_2023/meta_study.txt | 6 ++++-- public/egc_trap_ccr_msk_2023/LICENSE | 1 + public/egc_trap_ccr_msk_2023/meta_study.txt | 4 ++-- public/hcc_jcopo_msk_2023/data_clinical_patient.txt | 4 ++-- public/hcc_jcopo_msk_2023/meta_study.txt | 4 +++- .../makeanimpact_ccr_2023/case_lists/cases_all.txt | 4 ++-- .../makeanimpact_ccr_2023/case_lists/cases_cna.txt | 4 ++-- .../case_lists/cases_sequenced.txt | 4 ++-- public/makeanimpact_ccr_2023/case_lists/cases_sv.txt | 4 ++-- .../makeanimpact_ccr_2023/data_clinical_patient.txt | 4 ++-- .../makeanimpact_ccr_2023/data_clinical_sample.txt | 4 ++-- .../makeanimpact_ccr_2023/data_gene_panel_matrix.txt | 4 ++-- public/mbn_sfu_2023/LICENSE | 1 + public/mbn_sfu_2023/case_lists/cases_all.txt | 6 ++++++ public/mbn_sfu_2023/case_lists/cases_sequenced.txt | 6 ++++++ public/mbn_sfu_2023/case_lists/cases_sv.txt | 6 ++++++ public/mbn_sfu_2023/data_clinical_patient.txt | 3 +++ public/mbn_sfu_2023/data_clinical_sample.txt | 3 +++ .../data_mutational_signatures_contribution_SBS.txt | 3 +++ public/mbn_sfu_2023/data_mutations.txt | 3 +++ .../data_rna_seq_mrna_median_Zscores.txt | 3 +++ public/mbn_sfu_2023/data_sv.txt | 3 +++ public/mbn_sfu_2023/meta_clinical_patient.txt | 4 ++++ public/mbn_sfu_2023/meta_clinical_sample.txt | 4 ++++ .../meta_mutational_signatures_contribution_SBS.txt | 12 ++++++++++++ public/mbn_sfu_2023/meta_mutations.txt | 8 ++++++++ .../meta_rna_seq_mrna_median_Zscores.txt | 8 ++++++++ public/mbn_sfu_2023/meta_study.txt | 7 +++++++ public/mbn_sfu_2023/meta_sv.txt | 8 ++++++++ public/mtnn_msk_2022/case_lists/cases_all.txt | 2 +- public/mtnn_msk_2022/case_lists/cases_cna.txt | 2 +- public/mtnn_msk_2022/case_lists/cases_cnaseq.txt | 2 +- public/mtnn_msk_2022/case_lists/cases_sequenced.txt | 2 +- public/mtnn_msk_2022/data_clinical_patient.txt | 2 +- public/mtnn_msk_2022/data_clinical_sample.txt | 4 ++-- public/mtnn_msk_2022/data_cna.txt | 4 ++-- public/mtnn_msk_2022/data_cna_hg19.seg | 3 +++ public/mtnn_msk_2022/data_gene_panel_matrix.txt | 4 ++-- public/mtnn_msk_2022/data_mutations.txt | 2 +- public/mtnn_msk_2022/meta_cna_hg19_seg.txt | 6 ++++++ public/rms_msk_2023/LICENSE | 1 + public/rms_msk_2023/Readme.txt | 1 + public/rms_msk_2023/data_clinical_patient.txt | 4 ++-- public/rms_msk_2023/data_clinical_sample.txt | 4 ++-- public/rms_msk_2023/data_sv.txt | 4 ++-- public/rms_msk_2023/meta_study.txt | 4 ++-- public/sarcoma_msk_2023/data_clinical_patient.txt | 4 ++-- public/sarcoma_msk_2023/data_clinical_sample.txt | 4 ++-- public/sarcoma_msk_2023/data_sv.txt | 4 ++-- public/sarcoma_msk_2023/meta_study.txt | 4 +++- public/soft_tissue_msk_2023/data_clinical_sample.txt | 4 ++-- public/soft_tissue_msk_2023/meta_study.txt | 6 +++--- public/ucec_ancestry_cds_msk_2023/LICENSE | 1 + public/ucec_ancestry_cds_msk_2023/Readme.txt | 1 + public/ucec_ancestry_cds_msk_2023/meta_mutations.txt | 2 +- public/ucec_ancestry_cds_msk_2023/meta_study.txt | 6 +++--- 64 files changed, 177 insertions(+), 67 deletions(-) create mode 100644 public/egc_msk_2023/LICENSE create mode 100644 public/egc_msk_2023/Readme.txt create mode 100644 public/egc_trap_ccr_msk_2023/LICENSE create mode 100644 public/mbn_sfu_2023/LICENSE create mode 100644 public/mbn_sfu_2023/case_lists/cases_all.txt create mode 100644 public/mbn_sfu_2023/case_lists/cases_sequenced.txt create mode 100644 public/mbn_sfu_2023/case_lists/cases_sv.txt create mode 100644 public/mbn_sfu_2023/data_clinical_patient.txt create mode 100644 public/mbn_sfu_2023/data_clinical_sample.txt create mode 100644 public/mbn_sfu_2023/data_mutational_signatures_contribution_SBS.txt create mode 100644 public/mbn_sfu_2023/data_mutations.txt create mode 100644 public/mbn_sfu_2023/data_rna_seq_mrna_median_Zscores.txt create mode 100644 public/mbn_sfu_2023/data_sv.txt create mode 100644 public/mbn_sfu_2023/meta_clinical_patient.txt create mode 100644 public/mbn_sfu_2023/meta_clinical_sample.txt create mode 100644 public/mbn_sfu_2023/meta_mutational_signatures_contribution_SBS.txt create mode 100644 public/mbn_sfu_2023/meta_mutations.txt create mode 100644 public/mbn_sfu_2023/meta_rna_seq_mrna_median_Zscores.txt create mode 100644 public/mbn_sfu_2023/meta_study.txt create mode 100644 public/mbn_sfu_2023/meta_sv.txt create mode 100644 public/mtnn_msk_2022/data_cna_hg19.seg create mode 100644 public/mtnn_msk_2022/meta_cna_hg19_seg.txt create mode 100644 public/rms_msk_2023/LICENSE create mode 100644 public/rms_msk_2023/Readme.txt create mode 100644 public/ucec_ancestry_cds_msk_2023/LICENSE create mode 100644 public/ucec_ancestry_cds_msk_2023/Readme.txt diff --git a/public/bladder_msk_2023/meta_study.txt b/public/bladder_msk_2023/meta_study.txt index 09730cf74f..11e0fa5176 100644 --- a/public/bladder_msk_2023/meta_study.txt +++ b/public/bladder_msk_2023/meta_study.txt @@ -1,6 +1,6 @@ cancer_study_identifier: bladder_msk_2023 type_of_cancer: bladder -name: Bladder Cancer (MSK, Clin Cancer Research 2023) +name: Bladder Cancer (MSK, Clin Cancer Res 2023) description: Targeted sequencing of 526 bladder tumors and their matched normals via MSK-IMPACT. pmid: 37682528 citation: Guercio et al. Clin Cancer Res. 2023 \ No newline at end of file diff --git a/public/bm_nsclc_mskcc_2023/data_timeline_surgery.txt b/public/bm_nsclc_mskcc_2023/data_timeline_surgery.txt index 0f7be40866..0b35bc1f3e 100644 --- a/public/bm_nsclc_mskcc_2023/data_timeline_surgery.txt +++ b/public/bm_nsclc_mskcc_2023/data_timeline_surgery.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:43a13a3b0ac6acd0e16bd306e161c902bfc86d83d8d41d9fc01e9def7b7799fc +oid sha256:059c2a9ac890fd7bdd10cc330f78c74094b1c3f5aae7622a12fa478cfe219ad5 size 5328 diff --git a/public/cervix_msk_2023/data_clinical_patient.txt b/public/cervix_msk_2023/data_clinical_patient.txt index 9cc46ee412..6113ea79de 100644 --- a/public/cervix_msk_2023/data_clinical_patient.txt +++ b/public/cervix_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:1bfd06ca0d4ad4d529117ecce4e195598ef7b45358409f96edbcbc8c191e6c9b -size 13065 +oid sha256:cdc861027123205c3a615f5959ee1009ec71c25d7548a33fd85925cf534b8f2f +size 13077 diff --git a/public/egc_msk_2023/LICENSE b/public/egc_msk_2023/LICENSE new file mode 100644 index 0000000000..d5f3c4b535 --- /dev/null +++ b/public/egc_msk_2023/LICENSE @@ -0,0 +1 @@ +The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license. diff --git a/public/egc_msk_2023/Readme.txt b/public/egc_msk_2023/Readme.txt new file mode 100644 index 0000000000..6202caf574 --- /dev/null +++ b/public/egc_msk_2023/Readme.txt @@ -0,0 +1 @@ +Gene panels for this study can be found here: https://github.com/cBioPortal/datahub/tree/master/reference_data/gene_panels \ No newline at end of file diff --git a/public/egc_msk_2023/data_clinical_patient.txt b/public/egc_msk_2023/data_clinical_patient.txt index b4e0950b4b..8226165d61 100644 --- a/public/egc_msk_2023/data_clinical_patient.txt +++ b/public/egc_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:e5c2b7252cd54af7fa8f2be9370794ccbbc87eeaf0330fe748afecbb0f0f1a48 -size 147032 +oid sha256:f338ee7cd3385c2f425657c3730f86b938944abdf7c411f67e969b0c3b4c7b90 +size 146850 diff --git a/public/egc_msk_2023/data_clinical_sample.txt b/public/egc_msk_2023/data_clinical_sample.txt index 2b9742127a..f8e8560ff2 100644 --- a/public/egc_msk_2023/data_clinical_sample.txt +++ b/public/egc_msk_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:f13d55eedfdc20ac56be637901863dac6b14227d46f9fd4cc1ae20a6d3d4d0fb -size 495261 +oid sha256:9882a9145bb7034e3b230d89e98de18514888fb9366c00164d78ebc6fc74a515 +size 505764 diff --git a/public/egc_msk_2023/data_sv.txt b/public/egc_msk_2023/data_sv.txt index ae1365ffb0..f16f863c25 100644 --- a/public/egc_msk_2023/data_sv.txt +++ b/public/egc_msk_2023/data_sv.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3a1fe1d4f2d611ca8cc587bbbd485ba5c4215424be337f94100525129603ee5e -size 136244 +oid sha256:43c1a11797eb7ebe653424f72e030b9fe001310df21944a286c752bb7980f26e +size 136246 diff --git a/public/egc_msk_2023/meta_study.txt b/public/egc_msk_2023/meta_study.txt index 8968e583a1..344f33947e 100644 --- a/public/egc_msk_2023/meta_study.txt +++ b/public/egc_msk_2023/meta_study.txt @@ -1,5 +1,7 @@ type_of_cancer: stomach cancer_study_identifier: egc_msk_2023 -name: Esophageal/Stomach Cancer (MSK, 2023) +name: Esophagogastric Cancer (MSK, J Natl Cancer Inst 2023) short_name: EGC (MSK, 2023) -description: Targeted sequencing of 902 Esophageal/stomach cancer patients via MSK-IMPACT. \ No newline at end of file +description: Targeted sequencing of 902 patients with early-onset and average-onset esophagogastric cancers and their matched normals via MSK-IMPACT. +pmid: 37699004 +citation: Melissa A et al. J Natl Cancer Inst 2023 \ No newline at end of file diff --git a/public/egc_trap_ccr_msk_2023/LICENSE b/public/egc_trap_ccr_msk_2023/LICENSE new file mode 100644 index 0000000000..d5f3c4b535 --- /dev/null +++ b/public/egc_trap_ccr_msk_2023/LICENSE @@ -0,0 +1 @@ +The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license. diff --git a/public/egc_trap_ccr_msk_2023/meta_study.txt b/public/egc_trap_ccr_msk_2023/meta_study.txt index f88de2bb17..5ca70832d9 100644 --- a/public/egc_trap_ccr_msk_2023/meta_study.txt +++ b/public/egc_trap_ccr_msk_2023/meta_study.txt @@ -1,6 +1,6 @@ type_of_cancer: egc cancer_study_identifier: egc_trap_ccr_msk_2023 -name: Esophagogastric Cancer (MSK, 2023) -description: Whole Exome sequencing of 64 Esophagogastric Cancer tumor/normal sample pairs. +name: Esophagogastric Cancer (MSK, Clin Cancer Res 2023) +description: Whole exome sequencing of 64 esophagogastric cancers and their matched normal samples. pmid: 37406106 citation: Steven B et al. Clin Cancer Res 2023 \ No newline at end of file diff --git a/public/hcc_jcopo_msk_2023/data_clinical_patient.txt b/public/hcc_jcopo_msk_2023/data_clinical_patient.txt index c89b94a7d5..0c5c0c08bd 100644 --- a/public/hcc_jcopo_msk_2023/data_clinical_patient.txt +++ b/public/hcc_jcopo_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:bd3effb9d525bf8222023b36f0adc4faf83ad7b041762f6ae5d7c1c46b410d69 -size 3936 +oid sha256:300eb06ebfd7d20971658895bd3c2d4d0b93caa7711e4eaf2f474e462ebcbdfb +size 3746 diff --git a/public/hcc_jcopo_msk_2023/meta_study.txt b/public/hcc_jcopo_msk_2023/meta_study.txt index c8f7fd4ecf..cb0812b03d 100644 --- a/public/hcc_jcopo_msk_2023/meta_study.txt +++ b/public/hcc_jcopo_msk_2023/meta_study.txt @@ -1,5 +1,7 @@ cancer_study_identifier: hcc_jcopo_msk_2023 -description: Targeted sequencing of 90 Hepatocellular carcinoma cell free DNA (cfDNA) and associated tumor samples with matched normals. +description: Targeted sequencing of 51 hepatocellular carcinoma patients and their matched normal samples via MSK-IMPACT. name: Hepatocellular Carcinoma (MSK, JCO Precis Oncol 2023) type_of_cancer: hcc short_name: hcc_jcopo_msk_2023 +pmid: 37769223 +citation: Darren et al. JCO Precis Oncol 2023 \ No newline at end of file diff --git a/public/makeanimpact_ccr_2023/case_lists/cases_all.txt b/public/makeanimpact_ccr_2023/case_lists/cases_all.txt index 3de70369c6..7ada763002 100644 --- a/public/makeanimpact_ccr_2023/case_lists/cases_all.txt +++ b/public/makeanimpact_ccr_2023/case_lists/cases_all.txt @@ -1,6 +1,6 @@ cancer_study_identifier: makeanimpact_ccr_2023 stable_id: makeanimpact_ccr_2023_all case_list_name: All samples -case_list_description: All samples (182 samples) +case_list_description: All samples (184 samples) case_list_category: all_cases_in_study -case_list_ids: P-0047128-T07-IH3 P-0054143-T02-IH3 P-0046193-T02-IH3 P-0030075-T01-IH3 P-0054200-T06-IH3 P-0025743-T01-IH3 P-0055415-T03-XS1 P-0052744-T02-IH3 P-0037930-T03-IH3 P-0015952-T02-IM6 P-0032856-T01-IM6 P-0035223-T01-IM6 P-0002799-T01-IM3 P-0044278-T01-IH3 P-0047128-T06-IH3 P-0040068-T01-IH3 P-0035290-T01-IM6 P-0051195-T02-IH3 P-0038572-T01-IH3 P-0019992-T01-IM6 P-0037714-T01-IM6 P-0030070-T01-IH3 P-0033895-T01-IM6 P-0059151-T05-XS1 P-0050013-T02-IH3 P-0033247-T01-IM6 P-0020310-T01-IM6 P-0055847-T03-IH3 P-0042432-T02-IH3 P-0054200-T05-IH3 P-0044485-T01-IM6 P-0054144-T02-IH3 P-0000171-T01-IM3 P-0059151-T03-IH3 P-0040559-T01-IH3 P-0027222-T01-IM6 P-0044627-T02-IH3 P-0026894-T01-IH3 P-0020860-T02-IM6 P-0057952-T01-IH3 P-0055068-T02-IH3 P-0055296-T02-IH3 P-0012753-T01-IM5 P-0032417-T01-IH3 P-0027155-T01-IM6 P-0053198-T02-IH3 P-0039701-T01-IM6 P-0002011-T01-IM3 P-0016040-T01-IM6 P-0035683-T01-IH3 P-0031848-T01-IM6 P-0037017-T03-IH3 P-0040584-T01-IM6 P-0016713-T02-IM6 P-0012013-T02-IM6 P-0037259-T01-IM6 P-0019064-T01-IM6 P-0023610-T02-IM6 P-0045183-T01-IM6 P-0028161-T01-IM6 P-0036066-T01-IH3 P-0014282-T01-IM6 P-0055069-T02-IH3 P-0058776-T01-IM7 P-0034395-T01-IM6 P-0052727-T01-IH3 P-0054201-T04-IH3 P-0046138-T01-IH3 P-0057326-T04-XS1 P-0057299-T01-IH3 P-0058284-T01-IH3 P-0039707-T01-IH3 P-0055672-T01-IH3 P-0018993-T01-IM6 P-0035978-T02-IH3 P-0049236-T01-IH3 P-0052962-T02-IH3 P-0060356-T01-IH3 P-0035796-T01-IH3 P-0032415-T01-IH3 P-0053203-T02-IH3 P-0037800-T01-IM6 P-0040153-T01-IM6 P-0029877-T01-IH3 P-0042496-T01-IM6 P-0013548-T01-IM5 P-0034951-T01-IH3 P-0013550-T01-IM5 P-0058012-T01-IM6 P-0014198-T01-IM6 P-0031622-T01-IH3 P-0029530-T01-IM6 P-0032705-T01-IM6 P-0054201-T02-IH3 P-0040414-T01-IH3 P-0036996-T01-IH3 P-0027405-T01-IH3 P-0055295-T02-IH3 P-0019286-T01-IM6 P-0044627-T01-IH3 P-0055416-T02-IH3 P-0025782-T02-IM6 P-0059151-T02-IH3 P-0029080-T01-IH3 P-0031389-T01-IM6 P-0018859-T01-IM6 P-0054606-T01-IH3 P-0044156-T01-IH3 P-0011536-T01-IM5 P-0014638-T01-IM6 P-0051680-T01-IM6 P-0037154-T01-IM6 P-0020891-T01-IH3 P-0037017-T01-IH3 P-0020163-T01-IM6 P-0010795-T01-IM5 P-0047128-T02-IH3 P-0044277-T01-IH3 P-0053291-T02-IH3 P-0026400-T01-IM6 P-0028814-T01-IH3 P-0040896-T03-XS1 P-0031977-T01-IH3 P-0033846-T01-IM6 P-0028664-T01-IH3 P-0049362-T01-IM6 P-0059735-T01-IH3 P-0023849-T01-IM6 P-0028562-T01-IH3 P-0057326-T05-IH3 P-0015268-T01-IM6 P-0059151-T01-IH3 P-0044712-T01-IH3 P-0016480-T01-IM6 P-0058285-T01-IH3 P-0040896-T01-IH3 P-0014850-T01-IM6 P-0057807-T01-IH3 P-0028349-T01-IM6 P-0044668-T02-IM6 P-0057203-T01-IH3 P-0038125-T03-IM6 P-0047042-T02-IH3 P-0041237-T01-IM6 P-0017153-T01-IM6 P-0026497-T01-IM6 P-0048127-T01-IH3 P-0027034-T01-IM6 P-0000246-T01-IM3 P-0052960-T02-IH3 P-0008813-T02-IM5 P-0026248-T01-IM6 P-0042945-T03-IH3 P-0042945-T02-IH3 P-0057326-T11-IH3 P-0010107-T01-IM5 P-0058743-T01-IH3 P-0030487-T01-IH3 P-0023397-T01-IH3 P-0040922-T01-IM6 P-0023050-T01-IM6 P-0006350-T01-IM5 P-0030239-T01-IM6 P-0055473-T01-IM6 P-0055415-T02-IH3 P-0022523-T01-IM6 P-0016147-T01-IM5 P-0037930-T01-IH3 P-0031176-T01-IM6 P-0049437-T01-IM6 P-0054200-T02-IH3 P-0022842-T01-IM6 P-0058288-T01-IH3 P-0049834-T02-IH3 P-0053410-T02-IH3 P-0023802-T03-IH3 P-0034568-T01-IM6 P-0038987-T01-IM6 P-0056028-T02-IH3 P-0021017-T01-IH3 P-0056488-T02-IH3 P-0035971-T01-IM6 +case_list_ids: P-0013444-T01-IM5 P-0057326-T10-IH3 P-0013548-T01-IM5 P-0002011-T01-IM3 P-0002799-T01-IM3 P-0006350-T01-IM5 P-0010107-T01-IM5 P-0010795-T01-IM5 P-0011536-T01-IM5 P-0012753-T01-IM5 P-0013550-T01-IM5 P-0014198-T01-IM6 P-0022523-T01-IM6 P-0000171-T01-IM3 P-0014850-T01-IM6 P-0020860-T02-IM6 P-0014638-T01-IM6 P-0008813-T02-IM5 P-0022842-T01-IM6 P-0023849-T01-IM6 P-0015268-T01-IM6 P-0015952-T02-IM6 P-0016040-T01-IM6 P-0016147-T01-IM5 P-0016713-T02-IM6 P-0017153-T01-IM6 P-0018859-T01-IM6 P-0018993-T01-IM6 P-0019064-T01-IM6 P-0019286-T01-IM6 P-0019992-T01-IM6 P-0020163-T01-IM6 P-0020310-T01-IM6 P-0026400-T01-IM6 P-0026248-T01-IM6 P-0026497-T01-IM6 P-0025782-T02-IM6 P-0027155-T01-IM6 P-0027034-T01-IM6 P-0027222-T01-IM6 P-0028161-T01-IM6 P-0028349-T01-IM6 P-0029530-T01-IM6 P-0030239-T01-IM6 P-0031176-T01-IM6 P-0031389-T01-IM6 P-0031848-T01-IM6 P-0032705-T01-IM6 P-0033247-T01-IM6 P-0035971-T01-IM6 P-0032856-T01-IM6 P-0033846-T01-IM6 P-0033895-T01-IM6 P-0035223-T01-IM6 P-0035290-T01-IM6 P-0037800-T01-IM6 P-0038125-T03-IM6 P-0038987-T01-IM6 P-0034395-T01-IM6 P-0039701-T01-IM6 P-0000246-T01-IM3 P-0034568-T01-IM6 P-0040584-T01-IM6 P-0041237-T01-IM6 P-0045183-T01-IM6 P-0023610-T02-IM6 P-0023050-T01-IM6 P-0049437-T01-IM6 P-0049362-T01-IM6 P-0051680-T01-IM6 P-0016480-T01-IM6 P-0055473-T01-IM6 P-0058012-T01-IM6 P-0058776-T01-IM7 P-0012013-T02-IM6 P-0044668-T02-IM6 P-0040922-T01-IM6 P-0037714-T01-IM6 P-0037259-T01-IM6 P-0037154-T01-IM6 P-0040153-T01-IM6 P-0042496-T01-IM6 P-0044485-T01-IM6 P-0014282-T01-IM6 P-0035796-T01-IH3 P-0023802-T03-IH3 P-0030487-T01-IH3 P-0037930-T01-IH3 P-0035978-T02-IH3 P-0039707-T01-IH3 P-0020891-T01-IH3 P-0021017-T01-IH3 P-0023397-T01-IH3 P-0025743-T01-IH3 P-0026894-T01-IH3 P-0027405-T01-IH3 P-0028562-T01-IH3 P-0028664-T01-IH3 P-0028814-T01-IH3 P-0029080-T01-IH3 P-0030070-T01-IH3 P-0030075-T01-IH3 P-0031622-T01-IH3 P-0031977-T01-IH3 P-0032415-T01-IH3 P-0032417-T01-IH3 P-0038572-T01-IH3 P-0040414-T01-IH3 P-0037017-T03-IH3 P-0042945-T02-IH3 P-0044627-T02-IH3 P-0044712-T01-IH3 P-0044277-T01-IH3 P-0046138-T01-IH3 P-0046193-T02-IH3 P-0047128-T02-IH3 P-0040068-T01-IH3 P-0050013-T02-IH3 P-0040559-T01-IH3 P-0040896-T01-IH3 P-0042432-T02-IH3 P-0044156-T01-IH3 P-0044278-T01-IH3 P-0044627-T01-IH3 P-0051195-T02-IH3 P-0042945-T03-IH3 P-0052744-T02-IH3 P-0052960-T02-IH3 P-0052962-T02-IH3 P-0053198-T02-IH3 P-0053203-T02-IH3 P-0053291-T02-IH3 P-0053410-T02-IH3 P-0047042-T02-IH3 P-0048127-T01-IH3 P-0049236-T01-IH3 P-0049834-T02-IH3 P-0054143-T02-IH3 P-0054144-T02-IH3 P-0054200-T02-IH3 P-0054606-T01-IH3 P-0054200-T05-IH3 P-0054200-T06-IH3 P-0054201-T04-IH3 P-0055068-T02-IH3 P-0055069-T02-IH3 P-0055295-T02-IH3 P-0055296-T02-IH3 P-0047128-T06-IH3 P-0055415-T02-IH3 P-0055416-T02-IH3 P-0056028-T02-IH3 P-0054201-T02-IH3 P-0055847-T03-IH3 P-0057203-T01-IH3 P-0057299-T01-IH3 P-0057807-T01-IH3 P-0057952-T01-IH3 P-0057326-T05-IH3 P-0058284-T01-IH3 P-0058285-T01-IH3 P-0058288-T01-IH3 P-0058743-T01-IH3 P-0056488-T02-IH3 P-0059151-T01-IH3 P-0059735-T01-IH3 P-0060356-T01-IH3 P-0059151-T02-IH3 P-0059151-T03-IH3 P-0052727-T01-IH3 P-0029877-T01-IH3 P-0034951-T01-IH3 P-0035683-T01-IH3 P-0036066-T01-IH3 P-0036996-T01-IH3 P-0037017-T01-IH3 P-0037930-T03-IH3 P-0047128-T07-IH3 P-0057326-T11-IH3 P-0055672-T01-IH3 P-0040896-T03-XS1 P-0057326-T04-XS1 P-0055415-T03-XS1 P-0059151-T05-XS1 diff --git a/public/makeanimpact_ccr_2023/case_lists/cases_cna.txt b/public/makeanimpact_ccr_2023/case_lists/cases_cna.txt index e5c6e58d92..1dacee9036 100644 --- a/public/makeanimpact_ccr_2023/case_lists/cases_cna.txt +++ b/public/makeanimpact_ccr_2023/case_lists/cases_cna.txt @@ -1,6 +1,6 @@ cancer_study_identifier: makeanimpact_ccr_2023 stable_id: makeanimpact_ccr_2023_cna case_list_name: Samples with CNA data -case_list_description: Samples with CNA data (182 samples) +case_list_description: Samples with CNA data (184 samples) case_list_category: all_cases_with_cna_data -case_list_ids: P-0047128-T07-IH3 P-0054143-T02-IH3 P-0046193-T02-IH3 P-0030075-T01-IH3 P-0054200-T06-IH3 P-0025743-T01-IH3 P-0055415-T03-XS1 P-0052744-T02-IH3 P-0037930-T03-IH3 P-0015952-T02-IM6 P-0032856-T01-IM6 P-0035223-T01-IM6 P-0002799-T01-IM3 P-0044278-T01-IH3 P-0047128-T06-IH3 P-0040068-T01-IH3 P-0035290-T01-IM6 P-0051195-T02-IH3 P-0038572-T01-IH3 P-0019992-T01-IM6 P-0037714-T01-IM6 P-0030070-T01-IH3 P-0033895-T01-IM6 P-0059151-T05-XS1 P-0050013-T02-IH3 P-0033247-T01-IM6 P-0020310-T01-IM6 P-0055847-T03-IH3 P-0042432-T02-IH3 P-0054200-T05-IH3 P-0044485-T01-IM6 P-0054144-T02-IH3 P-0000171-T01-IM3 P-0059151-T03-IH3 P-0040559-T01-IH3 P-0027222-T01-IM6 P-0044627-T02-IH3 P-0026894-T01-IH3 P-0020860-T02-IM6 P-0057952-T01-IH3 P-0055068-T02-IH3 P-0055296-T02-IH3 P-0012753-T01-IM5 P-0032417-T01-IH3 P-0027155-T01-IM6 P-0053198-T02-IH3 P-0039701-T01-IM6 P-0002011-T01-IM3 P-0016040-T01-IM6 P-0035683-T01-IH3 P-0031848-T01-IM6 P-0037017-T03-IH3 P-0040584-T01-IM6 P-0016713-T02-IM6 P-0012013-T02-IM6 P-0037259-T01-IM6 P-0019064-T01-IM6 P-0023610-T02-IM6 P-0045183-T01-IM6 P-0028161-T01-IM6 P-0036066-T01-IH3 P-0057299-T01-IH3 P-0014282-T01-IM6 P-0055069-T02-IH3 P-0058776-T01-IM7 P-0006350-T01-IM5 P-0034395-T01-IM6 P-0052727-T01-IH3 P-0054201-T04-IH3 P-0046138-T01-IH3 P-0057326-T04-XS1 P-0060356-T01-IH3 P-0058284-T01-IH3 P-0039707-T01-IH3 P-0055672-T01-IH3 P-0018993-T01-IM6 P-0035978-T02-IH3 P-0049236-T01-IH3 P-0052962-T02-IH3 P-0035796-T01-IH3 P-0032415-T01-IH3 P-0053203-T02-IH3 P-0037800-T01-IM6 P-0040153-T01-IM6 P-0029877-T01-IH3 P-0042496-T01-IM6 P-0013548-T01-IM5 P-0034951-T01-IH3 P-0013550-T01-IM5 P-0058012-T01-IM6 P-0014198-T01-IM6 P-0031622-T01-IH3 P-0029530-T01-IM6 P-0032705-T01-IM6 P-0054201-T02-IH3 P-0040414-T01-IH3 P-0036996-T01-IH3 P-0027405-T01-IH3 P-0055295-T02-IH3 P-0019286-T01-IM6 P-0044627-T01-IH3 P-0055416-T02-IH3 P-0025782-T02-IM6 P-0059151-T02-IH3 P-0029080-T01-IH3 P-0031389-T01-IM6 P-0018859-T01-IM6 P-0054606-T01-IH3 P-0044156-T01-IH3 P-0011536-T01-IM5 P-0014638-T01-IM6 P-0051680-T01-IM6 P-0037154-T01-IM6 P-0020891-T01-IH3 P-0037017-T01-IH3 P-0020163-T01-IM6 P-0010795-T01-IM5 P-0047128-T02-IH3 P-0044277-T01-IH3 P-0053291-T02-IH3 P-0026400-T01-IM6 P-0028814-T01-IH3 P-0040896-T03-XS1 P-0031977-T01-IH3 P-0033846-T01-IM6 P-0028664-T01-IH3 P-0049362-T01-IM6 P-0059735-T01-IH3 P-0023849-T01-IM6 P-0028562-T01-IH3 P-0057326-T05-IH3 P-0015268-T01-IM6 P-0059151-T01-IH3 P-0044712-T01-IH3 P-0016480-T01-IM6 P-0058285-T01-IH3 P-0040896-T01-IH3 P-0014850-T01-IM6 P-0057807-T01-IH3 P-0028349-T01-IM6 P-0044668-T02-IM6 P-0057203-T01-IH3 P-0038125-T03-IM6 P-0041237-T01-IM6 P-0017153-T01-IM6 P-0026497-T01-IM6 P-0048127-T01-IH3 P-0027034-T01-IM6 P-0052960-T02-IH3 P-0000246-T01-IM3 P-0008813-T02-IM5 P-0026248-T01-IM6 P-0042945-T03-IH3 P-0042945-T02-IH3 P-0057326-T11-IH3 P-0010107-T01-IM5 P-0058743-T01-IH3 P-0030487-T01-IH3 P-0023397-T01-IH3 P-0040922-T01-IM6 P-0023050-T01-IM6 P-0047042-T02-IH3 P-0030239-T01-IM6 P-0055473-T01-IM6 P-0055415-T02-IH3 P-0022523-T01-IM6 P-0016147-T01-IM5 P-0037930-T01-IH3 P-0031176-T01-IM6 P-0049437-T01-IM6 P-0054200-T02-IH3 P-0022842-T01-IM6 P-0058288-T01-IH3 P-0049834-T02-IH3 P-0053410-T02-IH3 P-0023802-T03-IH3 P-0034568-T01-IM6 P-0038987-T01-IM6 P-0056028-T02-IH3 P-0021017-T01-IH3 P-0056488-T02-IH3 P-0035971-T01-IM6 +case_list_ids: P-0013444-T01-IM5 P-0057326-T10-IH3 P-0013548-T01-IM5 P-0002011-T01-IM3 P-0002799-T01-IM3 P-0006350-T01-IM5 P-0010107-T01-IM5 P-0010795-T01-IM5 P-0011536-T01-IM5 P-0012753-T01-IM5 P-0013550-T01-IM5 P-0014198-T01-IM6 P-0022523-T01-IM6 P-0000171-T01-IM3 P-0014850-T01-IM6 P-0020860-T02-IM6 P-0014638-T01-IM6 P-0008813-T02-IM5 P-0022842-T01-IM6 P-0023849-T01-IM6 P-0015268-T01-IM6 P-0015952-T02-IM6 P-0016040-T01-IM6 P-0016147-T01-IM5 P-0016713-T02-IM6 P-0017153-T01-IM6 P-0018859-T01-IM6 P-0018993-T01-IM6 P-0019064-T01-IM6 P-0019286-T01-IM6 P-0019992-T01-IM6 P-0020163-T01-IM6 P-0020310-T01-IM6 P-0026400-T01-IM6 P-0026248-T01-IM6 P-0026497-T01-IM6 P-0025782-T02-IM6 P-0027155-T01-IM6 P-0027034-T01-IM6 P-0027222-T01-IM6 P-0028161-T01-IM6 P-0028349-T01-IM6 P-0029530-T01-IM6 P-0030239-T01-IM6 P-0031176-T01-IM6 P-0031389-T01-IM6 P-0031848-T01-IM6 P-0032705-T01-IM6 P-0033247-T01-IM6 P-0035971-T01-IM6 P-0032856-T01-IM6 P-0033846-T01-IM6 P-0033895-T01-IM6 P-0035223-T01-IM6 P-0035290-T01-IM6 P-0037800-T01-IM6 P-0038125-T03-IM6 P-0038987-T01-IM6 P-0034395-T01-IM6 P-0039701-T01-IM6 P-0000246-T01-IM3 P-0034568-T01-IM6 P-0040584-T01-IM6 P-0041237-T01-IM6 P-0045183-T01-IM6 P-0023610-T02-IM6 P-0023050-T01-IM6 P-0049437-T01-IM6 P-0049362-T01-IM6 P-0051680-T01-IM6 P-0016480-T01-IM6 P-0055473-T01-IM6 P-0058012-T01-IM6 P-0058776-T01-IM7 P-0012013-T02-IM6 P-0044668-T02-IM6 P-0040922-T01-IM6 P-0037714-T01-IM6 P-0037259-T01-IM6 P-0037154-T01-IM6 P-0040153-T01-IM6 P-0042496-T01-IM6 P-0044485-T01-IM6 P-0014282-T01-IM6 P-0035796-T01-IH3 P-0023802-T03-IH3 P-0030487-T01-IH3 P-0037930-T01-IH3 P-0035978-T02-IH3 P-0039707-T01-IH3 P-0020891-T01-IH3 P-0021017-T01-IH3 P-0023397-T01-IH3 P-0025743-T01-IH3 P-0026894-T01-IH3 P-0027405-T01-IH3 P-0028562-T01-IH3 P-0028664-T01-IH3 P-0028814-T01-IH3 P-0029080-T01-IH3 P-0030070-T01-IH3 P-0030075-T01-IH3 P-0031622-T01-IH3 P-0031977-T01-IH3 P-0032415-T01-IH3 P-0032417-T01-IH3 P-0038572-T01-IH3 P-0040414-T01-IH3 P-0037017-T03-IH3 P-0042945-T02-IH3 P-0044627-T02-IH3 P-0044712-T01-IH3 P-0044277-T01-IH3 P-0046138-T01-IH3 P-0046193-T02-IH3 P-0047128-T02-IH3 P-0040068-T01-IH3 P-0050013-T02-IH3 P-0040559-T01-IH3 P-0040896-T01-IH3 P-0042432-T02-IH3 P-0044156-T01-IH3 P-0044278-T01-IH3 P-0044627-T01-IH3 P-0051195-T02-IH3 P-0042945-T03-IH3 P-0052744-T02-IH3 P-0052960-T02-IH3 P-0052962-T02-IH3 P-0053198-T02-IH3 P-0053203-T02-IH3 P-0053291-T02-IH3 P-0053410-T02-IH3 P-0047042-T02-IH3 P-0048127-T01-IH3 P-0049236-T01-IH3 P-0049834-T02-IH3 P-0054143-T02-IH3 P-0054144-T02-IH3 P-0054200-T02-IH3 P-0054606-T01-IH3 P-0054200-T05-IH3 P-0054200-T06-IH3 P-0054201-T04-IH3 P-0055068-T02-IH3 P-0055069-T02-IH3 P-0055295-T02-IH3 P-0055296-T02-IH3 P-0047128-T06-IH3 P-0055415-T02-IH3 P-0055416-T02-IH3 P-0056028-T02-IH3 P-0054201-T02-IH3 P-0055847-T03-IH3 P-0057203-T01-IH3 P-0057299-T01-IH3 P-0057807-T01-IH3 P-0057952-T01-IH3 P-0057326-T05-IH3 P-0058284-T01-IH3 P-0058285-T01-IH3 P-0058288-T01-IH3 P-0058743-T01-IH3 P-0056488-T02-IH3 P-0059151-T01-IH3 P-0059735-T01-IH3 P-0060356-T01-IH3 P-0059151-T02-IH3 P-0059151-T03-IH3 P-0052727-T01-IH3 P-0029877-T01-IH3 P-0034951-T01-IH3 P-0035683-T01-IH3 P-0036066-T01-IH3 P-0036996-T01-IH3 P-0037017-T01-IH3 P-0037930-T03-IH3 P-0047128-T07-IH3 P-0057326-T11-IH3 P-0055672-T01-IH3 P-0040896-T03-XS1 P-0057326-T04-XS1 P-0055415-T03-XS1 P-0059151-T05-XS1 diff --git a/public/makeanimpact_ccr_2023/case_lists/cases_sequenced.txt b/public/makeanimpact_ccr_2023/case_lists/cases_sequenced.txt index 8598d3c6d8..0751c9c300 100644 --- a/public/makeanimpact_ccr_2023/case_lists/cases_sequenced.txt +++ b/public/makeanimpact_ccr_2023/case_lists/cases_sequenced.txt @@ -1,6 +1,6 @@ cancer_study_identifier: makeanimpact_ccr_2023 stable_id: makeanimpact_ccr_2023_sequenced case_list_name: Samples with mutation data -case_list_description: Samples with mutation data (182 samples) +case_list_description: Samples with mutation data (184 samples) case_list_category: all_cases_with_mutation_data -case_list_ids: P-0047128-T07-IH3 P-0054143-T02-IH3 P-0046193-T02-IH3 P-0030075-T01-IH3 P-0054200-T06-IH3 P-0025743-T01-IH3 P-0055415-T03-XS1 P-0052744-T02-IH3 P-0037930-T03-IH3 P-0015952-T02-IM6 P-0032856-T01-IM6 P-0035223-T01-IM6 P-0002799-T01-IM3 P-0044278-T01-IH3 P-0047128-T06-IH3 P-0040068-T01-IH3 P-0035290-T01-IM6 P-0051195-T02-IH3 P-0038572-T01-IH3 P-0019992-T01-IM6 P-0037714-T01-IM6 P-0030070-T01-IH3 P-0033895-T01-IM6 P-0059151-T05-XS1 P-0050013-T02-IH3 P-0033247-T01-IM6 P-0020310-T01-IM6 P-0055847-T03-IH3 P-0042432-T02-IH3 P-0054200-T05-IH3 P-0044485-T01-IM6 P-0054144-T02-IH3 P-0000171-T01-IM3 P-0059151-T03-IH3 P-0040559-T01-IH3 P-0027222-T01-IM6 P-0044627-T02-IH3 P-0026894-T01-IH3 P-0020860-T02-IM6 P-0057952-T01-IH3 P-0055068-T02-IH3 P-0055296-T02-IH3 P-0012753-T01-IM5 P-0032417-T01-IH3 P-0027155-T01-IM6 P-0053198-T02-IH3 P-0039701-T01-IM6 P-0002011-T01-IM3 P-0016040-T01-IM6 P-0035683-T01-IH3 P-0031848-T01-IM6 P-0037017-T03-IH3 P-0040584-T01-IM6 P-0016713-T02-IM6 P-0012013-T02-IM6 P-0037259-T01-IM6 P-0019064-T01-IM6 P-0023610-T02-IM6 P-0045183-T01-IM6 P-0028161-T01-IM6 P-0036066-T01-IH3 P-0014282-T01-IM6 P-0055069-T02-IH3 P-0058776-T01-IM7 P-0034395-T01-IM6 P-0052727-T01-IH3 P-0054201-T04-IH3 P-0046138-T01-IH3 P-0057326-T04-XS1 P-0057299-T01-IH3 P-0058284-T01-IH3 P-0039707-T01-IH3 P-0055672-T01-IH3 P-0018993-T01-IM6 P-0035978-T02-IH3 P-0049236-T01-IH3 P-0052962-T02-IH3 P-0060356-T01-IH3 P-0035796-T01-IH3 P-0032415-T01-IH3 P-0053203-T02-IH3 P-0037800-T01-IM6 P-0040153-T01-IM6 P-0029877-T01-IH3 P-0042496-T01-IM6 P-0013548-T01-IM5 P-0034951-T01-IH3 P-0013550-T01-IM5 P-0058012-T01-IM6 P-0014198-T01-IM6 P-0031622-T01-IH3 P-0029530-T01-IM6 P-0032705-T01-IM6 P-0054201-T02-IH3 P-0040414-T01-IH3 P-0036996-T01-IH3 P-0027405-T01-IH3 P-0055295-T02-IH3 P-0019286-T01-IM6 P-0044627-T01-IH3 P-0055416-T02-IH3 P-0025782-T02-IM6 P-0059151-T02-IH3 P-0029080-T01-IH3 P-0031389-T01-IM6 P-0018859-T01-IM6 P-0054606-T01-IH3 P-0044156-T01-IH3 P-0011536-T01-IM5 P-0014638-T01-IM6 P-0051680-T01-IM6 P-0037154-T01-IM6 P-0020891-T01-IH3 P-0037017-T01-IH3 P-0020163-T01-IM6 P-0010795-T01-IM5 P-0047128-T02-IH3 P-0044277-T01-IH3 P-0053291-T02-IH3 P-0026400-T01-IM6 P-0028814-T01-IH3 P-0040896-T03-XS1 P-0031977-T01-IH3 P-0033846-T01-IM6 P-0028664-T01-IH3 P-0049362-T01-IM6 P-0059735-T01-IH3 P-0023849-T01-IM6 P-0028562-T01-IH3 P-0057326-T05-IH3 P-0015268-T01-IM6 P-0059151-T01-IH3 P-0044712-T01-IH3 P-0016480-T01-IM6 P-0058285-T01-IH3 P-0040896-T01-IH3 P-0014850-T01-IM6 P-0057807-T01-IH3 P-0028349-T01-IM6 P-0044668-T02-IM6 P-0057203-T01-IH3 P-0038125-T03-IM6 P-0047042-T02-IH3 P-0041237-T01-IM6 P-0017153-T01-IM6 P-0026497-T01-IM6 P-0048127-T01-IH3 P-0027034-T01-IM6 P-0000246-T01-IM3 P-0052960-T02-IH3 P-0008813-T02-IM5 P-0026248-T01-IM6 P-0042945-T03-IH3 P-0042945-T02-IH3 P-0057326-T11-IH3 P-0010107-T01-IM5 P-0058743-T01-IH3 P-0030487-T01-IH3 P-0023397-T01-IH3 P-0040922-T01-IM6 P-0023050-T01-IM6 P-0006350-T01-IM5 P-0030239-T01-IM6 P-0055473-T01-IM6 P-0055415-T02-IH3 P-0022523-T01-IM6 P-0016147-T01-IM5 P-0037930-T01-IH3 P-0031176-T01-IM6 P-0049437-T01-IM6 P-0054200-T02-IH3 P-0022842-T01-IM6 P-0058288-T01-IH3 P-0049834-T02-IH3 P-0053410-T02-IH3 P-0023802-T03-IH3 P-0034568-T01-IM6 P-0038987-T01-IM6 P-0056028-T02-IH3 P-0021017-T01-IH3 P-0056488-T02-IH3 P-0035971-T01-IM6 \ No newline at end of file +case_list_ids: P-0013444-T01-IM5 P-0057326-T10-IH3 P-0013548-T01-IM5 P-0002011-T01-IM3 P-0002799-T01-IM3 P-0006350-T01-IM5 P-0010107-T01-IM5 P-0010795-T01-IM5 P-0011536-T01-IM5 P-0012753-T01-IM5 P-0013550-T01-IM5 P-0014198-T01-IM6 P-0022523-T01-IM6 P-0000171-T01-IM3 P-0014850-T01-IM6 P-0020860-T02-IM6 P-0014638-T01-IM6 P-0008813-T02-IM5 P-0022842-T01-IM6 P-0023849-T01-IM6 P-0015268-T01-IM6 P-0015952-T02-IM6 P-0016040-T01-IM6 P-0016147-T01-IM5 P-0016713-T02-IM6 P-0017153-T01-IM6 P-0018859-T01-IM6 P-0018993-T01-IM6 P-0019064-T01-IM6 P-0019286-T01-IM6 P-0019992-T01-IM6 P-0020163-T01-IM6 P-0020310-T01-IM6 P-0026400-T01-IM6 P-0026248-T01-IM6 P-0026497-T01-IM6 P-0025782-T02-IM6 P-0027155-T01-IM6 P-0027034-T01-IM6 P-0027222-T01-IM6 P-0028161-T01-IM6 P-0028349-T01-IM6 P-0029530-T01-IM6 P-0030239-T01-IM6 P-0031176-T01-IM6 P-0031389-T01-IM6 P-0031848-T01-IM6 P-0032705-T01-IM6 P-0033247-T01-IM6 P-0035971-T01-IM6 P-0032856-T01-IM6 P-0033846-T01-IM6 P-0033895-T01-IM6 P-0035223-T01-IM6 P-0035290-T01-IM6 P-0037800-T01-IM6 P-0038125-T03-IM6 P-0038987-T01-IM6 P-0034395-T01-IM6 P-0039701-T01-IM6 P-0000246-T01-IM3 P-0034568-T01-IM6 P-0040584-T01-IM6 P-0041237-T01-IM6 P-0045183-T01-IM6 P-0023610-T02-IM6 P-0023050-T01-IM6 P-0049437-T01-IM6 P-0049362-T01-IM6 P-0051680-T01-IM6 P-0016480-T01-IM6 P-0055473-T01-IM6 P-0058012-T01-IM6 P-0058776-T01-IM7 P-0012013-T02-IM6 P-0044668-T02-IM6 P-0040922-T01-IM6 P-0037714-T01-IM6 P-0037259-T01-IM6 P-0037154-T01-IM6 P-0040153-T01-IM6 P-0042496-T01-IM6 P-0044485-T01-IM6 P-0014282-T01-IM6 P-0035796-T01-IH3 P-0023802-T03-IH3 P-0030487-T01-IH3 P-0037930-T01-IH3 P-0035978-T02-IH3 P-0039707-T01-IH3 P-0020891-T01-IH3 P-0021017-T01-IH3 P-0023397-T01-IH3 P-0025743-T01-IH3 P-0026894-T01-IH3 P-0027405-T01-IH3 P-0028562-T01-IH3 P-0028664-T01-IH3 P-0028814-T01-IH3 P-0029080-T01-IH3 P-0030070-T01-IH3 P-0030075-T01-IH3 P-0031622-T01-IH3 P-0031977-T01-IH3 P-0032415-T01-IH3 P-0032417-T01-IH3 P-0038572-T01-IH3 P-0040414-T01-IH3 P-0037017-T03-IH3 P-0042945-T02-IH3 P-0044627-T02-IH3 P-0044712-T01-IH3 P-0044277-T01-IH3 P-0046138-T01-IH3 P-0046193-T02-IH3 P-0047128-T02-IH3 P-0040068-T01-IH3 P-0050013-T02-IH3 P-0040559-T01-IH3 P-0040896-T01-IH3 P-0042432-T02-IH3 P-0044156-T01-IH3 P-0044278-T01-IH3 P-0044627-T01-IH3 P-0051195-T02-IH3 P-0042945-T03-IH3 P-0052744-T02-IH3 P-0052960-T02-IH3 P-0052962-T02-IH3 P-0053198-T02-IH3 P-0053203-T02-IH3 P-0053291-T02-IH3 P-0053410-T02-IH3 P-0047042-T02-IH3 P-0048127-T01-IH3 P-0049236-T01-IH3 P-0049834-T02-IH3 P-0054143-T02-IH3 P-0054144-T02-IH3 P-0054200-T02-IH3 P-0054606-T01-IH3 P-0054200-T05-IH3 P-0054200-T06-IH3 P-0054201-T04-IH3 P-0055068-T02-IH3 P-0055069-T02-IH3 P-0055295-T02-IH3 P-0055296-T02-IH3 P-0047128-T06-IH3 P-0055415-T02-IH3 P-0055416-T02-IH3 P-0056028-T02-IH3 P-0054201-T02-IH3 P-0055847-T03-IH3 P-0057203-T01-IH3 P-0057299-T01-IH3 P-0057807-T01-IH3 P-0057952-T01-IH3 P-0057326-T05-IH3 P-0058284-T01-IH3 P-0058285-T01-IH3 P-0058288-T01-IH3 P-0058743-T01-IH3 P-0056488-T02-IH3 P-0059151-T01-IH3 P-0059735-T01-IH3 P-0060356-T01-IH3 P-0059151-T02-IH3 P-0059151-T03-IH3 P-0052727-T01-IH3 P-0029877-T01-IH3 P-0034951-T01-IH3 P-0035683-T01-IH3 P-0036066-T01-IH3 P-0036996-T01-IH3 P-0037017-T01-IH3 P-0037930-T03-IH3 P-0047128-T07-IH3 P-0057326-T11-IH3 P-0055672-T01-IH3 P-0040896-T03-XS1 P-0057326-T04-XS1 P-0055415-T03-XS1 P-0059151-T05-XS1 \ No newline at end of file diff --git a/public/makeanimpact_ccr_2023/case_lists/cases_sv.txt b/public/makeanimpact_ccr_2023/case_lists/cases_sv.txt index cda570ff3a..b89968c97b 100644 --- a/public/makeanimpact_ccr_2023/case_lists/cases_sv.txt +++ b/public/makeanimpact_ccr_2023/case_lists/cases_sv.txt @@ -1,6 +1,6 @@ cancer_study_identifier: makeanimpact_ccr_2023 stable_id: makeanimpact_ccr_2023_sv case_list_name: Samples with SV data -case_list_description: All samples (182 samples) +case_list_description: All samples (184 samples) case_list_category: all_cases_with_sv_data -case_list_ids: P-0047128-T07-IH3 P-0054143-T02-IH3 P-0046193-T02-IH3 P-0030075-T01-IH3 P-0054200-T06-IH3 P-0025743-T01-IH3 P-0055415-T03-XS1 P-0052744-T02-IH3 P-0037930-T03-IH3 P-0015952-T02-IM6 P-0032856-T01-IM6 P-0035223-T01-IM6 P-0002799-T01-IM3 P-0044278-T01-IH3 P-0047128-T06-IH3 P-0040068-T01-IH3 P-0035290-T01-IM6 P-0051195-T02-IH3 P-0038572-T01-IH3 P-0019992-T01-IM6 P-0037714-T01-IM6 P-0030070-T01-IH3 P-0033895-T01-IM6 P-0059151-T05-XS1 P-0050013-T02-IH3 P-0033247-T01-IM6 P-0020310-T01-IM6 P-0055847-T03-IH3 P-0042432-T02-IH3 P-0054200-T05-IH3 P-0044485-T01-IM6 P-0054144-T02-IH3 P-0000171-T01-IM3 P-0059151-T03-IH3 P-0040559-T01-IH3 P-0027222-T01-IM6 P-0044627-T02-IH3 P-0026894-T01-IH3 P-0020860-T02-IM6 P-0057952-T01-IH3 P-0055068-T02-IH3 P-0055296-T02-IH3 P-0012753-T01-IM5 P-0032417-T01-IH3 P-0027155-T01-IM6 P-0053198-T02-IH3 P-0039701-T01-IM6 P-0002011-T01-IM3 P-0016040-T01-IM6 P-0035683-T01-IH3 P-0031848-T01-IM6 P-0037017-T03-IH3 P-0040584-T01-IM6 P-0016713-T02-IM6 P-0012013-T02-IM6 P-0037259-T01-IM6 P-0019064-T01-IM6 P-0023610-T02-IM6 P-0045183-T01-IM6 P-0028161-T01-IM6 P-0036066-T01-IH3 P-0014282-T01-IM6 P-0055069-T02-IH3 P-0058776-T01-IM7 P-0034395-T01-IM6 P-0052727-T01-IH3 P-0054201-T04-IH3 P-0046138-T01-IH3 P-0057326-T04-XS1 P-0057299-T01-IH3 P-0058284-T01-IH3 P-0039707-T01-IH3 P-0055672-T01-IH3 P-0018993-T01-IM6 P-0035978-T02-IH3 P-0049236-T01-IH3 P-0052962-T02-IH3 P-0060356-T01-IH3 P-0035796-T01-IH3 P-0032415-T01-IH3 P-0053203-T02-IH3 P-0037800-T01-IM6 P-0040153-T01-IM6 P-0029877-T01-IH3 P-0042496-T01-IM6 P-0013548-T01-IM5 P-0034951-T01-IH3 P-0013550-T01-IM5 P-0058012-T01-IM6 P-0014198-T01-IM6 P-0031622-T01-IH3 P-0029530-T01-IM6 P-0032705-T01-IM6 P-0054201-T02-IH3 P-0040414-T01-IH3 P-0036996-T01-IH3 P-0027405-T01-IH3 P-0055295-T02-IH3 P-0019286-T01-IM6 P-0044627-T01-IH3 P-0055416-T02-IH3 P-0025782-T02-IM6 P-0059151-T02-IH3 P-0029080-T01-IH3 P-0031389-T01-IM6 P-0018859-T01-IM6 P-0054606-T01-IH3 P-0044156-T01-IH3 P-0011536-T01-IM5 P-0014638-T01-IM6 P-0051680-T01-IM6 P-0037154-T01-IM6 P-0020891-T01-IH3 P-0037017-T01-IH3 P-0020163-T01-IM6 P-0010795-T01-IM5 P-0047128-T02-IH3 P-0044277-T01-IH3 P-0053291-T02-IH3 P-0026400-T01-IM6 P-0028814-T01-IH3 P-0040896-T03-XS1 P-0031977-T01-IH3 P-0033846-T01-IM6 P-0028664-T01-IH3 P-0049362-T01-IM6 P-0059735-T01-IH3 P-0023849-T01-IM6 P-0028562-T01-IH3 P-0057326-T05-IH3 P-0015268-T01-IM6 P-0059151-T01-IH3 P-0044712-T01-IH3 P-0016480-T01-IM6 P-0058285-T01-IH3 P-0040896-T01-IH3 P-0014850-T01-IM6 P-0057807-T01-IH3 P-0028349-T01-IM6 P-0044668-T02-IM6 P-0057203-T01-IH3 P-0038125-T03-IM6 P-0047042-T02-IH3 P-0041237-T01-IM6 P-0017153-T01-IM6 P-0026497-T01-IM6 P-0048127-T01-IH3 P-0027034-T01-IM6 P-0000246-T01-IM3 P-0052960-T02-IH3 P-0008813-T02-IM5 P-0026248-T01-IM6 P-0042945-T03-IH3 P-0042945-T02-IH3 P-0057326-T11-IH3 P-0010107-T01-IM5 P-0058743-T01-IH3 P-0030487-T01-IH3 P-0023397-T01-IH3 P-0040922-T01-IM6 P-0023050-T01-IM6 P-0006350-T01-IM5 P-0030239-T01-IM6 P-0055473-T01-IM6 P-0055415-T02-IH3 P-0022523-T01-IM6 P-0016147-T01-IM5 P-0037930-T01-IH3 P-0031176-T01-IM6 P-0049437-T01-IM6 P-0054200-T02-IH3 P-0022842-T01-IM6 P-0058288-T01-IH3 P-0049834-T02-IH3 P-0053410-T02-IH3 P-0023802-T03-IH3 P-0034568-T01-IM6 P-0038987-T01-IM6 P-0056028-T02-IH3 P-0021017-T01-IH3 P-0056488-T02-IH3 P-0035971-T01-IM6 \ No newline at end of file +case_list_ids: P-0013444-T01-IM5 P-0057326-T10-IH3 P-0013548-T01-IM5 P-0002011-T01-IM3 P-0002799-T01-IM3 P-0006350-T01-IM5 P-0010107-T01-IM5 P-0010795-T01-IM5 P-0011536-T01-IM5 P-0012753-T01-IM5 P-0013550-T01-IM5 P-0014198-T01-IM6 P-0022523-T01-IM6 P-0000171-T01-IM3 P-0014850-T01-IM6 P-0020860-T02-IM6 P-0014638-T01-IM6 P-0008813-T02-IM5 P-0022842-T01-IM6 P-0023849-T01-IM6 P-0015268-T01-IM6 P-0015952-T02-IM6 P-0016040-T01-IM6 P-0016147-T01-IM5 P-0016713-T02-IM6 P-0017153-T01-IM6 P-0018859-T01-IM6 P-0018993-T01-IM6 P-0019064-T01-IM6 P-0019286-T01-IM6 P-0019992-T01-IM6 P-0020163-T01-IM6 P-0020310-T01-IM6 P-0026400-T01-IM6 P-0026248-T01-IM6 P-0026497-T01-IM6 P-0025782-T02-IM6 P-0027155-T01-IM6 P-0027034-T01-IM6 P-0027222-T01-IM6 P-0028161-T01-IM6 P-0028349-T01-IM6 P-0029530-T01-IM6 P-0030239-T01-IM6 P-0031176-T01-IM6 P-0031389-T01-IM6 P-0031848-T01-IM6 P-0032705-T01-IM6 P-0033247-T01-IM6 P-0035971-T01-IM6 P-0032856-T01-IM6 P-0033846-T01-IM6 P-0033895-T01-IM6 P-0035223-T01-IM6 P-0035290-T01-IM6 P-0037800-T01-IM6 P-0038125-T03-IM6 P-0038987-T01-IM6 P-0034395-T01-IM6 P-0039701-T01-IM6 P-0000246-T01-IM3 P-0034568-T01-IM6 P-0040584-T01-IM6 P-0041237-T01-IM6 P-0045183-T01-IM6 P-0023610-T02-IM6 P-0023050-T01-IM6 P-0049437-T01-IM6 P-0049362-T01-IM6 P-0051680-T01-IM6 P-0016480-T01-IM6 P-0055473-T01-IM6 P-0058012-T01-IM6 P-0058776-T01-IM7 P-0012013-T02-IM6 P-0044668-T02-IM6 P-0040922-T01-IM6 P-0037714-T01-IM6 P-0037259-T01-IM6 P-0037154-T01-IM6 P-0040153-T01-IM6 P-0042496-T01-IM6 P-0044485-T01-IM6 P-0014282-T01-IM6 P-0035796-T01-IH3 P-0023802-T03-IH3 P-0030487-T01-IH3 P-0037930-T01-IH3 P-0035978-T02-IH3 P-0039707-T01-IH3 P-0020891-T01-IH3 P-0021017-T01-IH3 P-0023397-T01-IH3 P-0025743-T01-IH3 P-0026894-T01-IH3 P-0027405-T01-IH3 P-0028562-T01-IH3 P-0028664-T01-IH3 P-0028814-T01-IH3 P-0029080-T01-IH3 P-0030070-T01-IH3 P-0030075-T01-IH3 P-0031622-T01-IH3 P-0031977-T01-IH3 P-0032415-T01-IH3 P-0032417-T01-IH3 P-0038572-T01-IH3 P-0040414-T01-IH3 P-0037017-T03-IH3 P-0042945-T02-IH3 P-0044627-T02-IH3 P-0044712-T01-IH3 P-0044277-T01-IH3 P-0046138-T01-IH3 P-0046193-T02-IH3 P-0047128-T02-IH3 P-0040068-T01-IH3 P-0050013-T02-IH3 P-0040559-T01-IH3 P-0040896-T01-IH3 P-0042432-T02-IH3 P-0044156-T01-IH3 P-0044278-T01-IH3 P-0044627-T01-IH3 P-0051195-T02-IH3 P-0042945-T03-IH3 P-0052744-T02-IH3 P-0052960-T02-IH3 P-0052962-T02-IH3 P-0053198-T02-IH3 P-0053203-T02-IH3 P-0053291-T02-IH3 P-0053410-T02-IH3 P-0047042-T02-IH3 P-0048127-T01-IH3 P-0049236-T01-IH3 P-0049834-T02-IH3 P-0054143-T02-IH3 P-0054144-T02-IH3 P-0054200-T02-IH3 P-0054606-T01-IH3 P-0054200-T05-IH3 P-0054200-T06-IH3 P-0054201-T04-IH3 P-0055068-T02-IH3 P-0055069-T02-IH3 P-0055295-T02-IH3 P-0055296-T02-IH3 P-0047128-T06-IH3 P-0055415-T02-IH3 P-0055416-T02-IH3 P-0056028-T02-IH3 P-0054201-T02-IH3 P-0055847-T03-IH3 P-0057203-T01-IH3 P-0057299-T01-IH3 P-0057807-T01-IH3 P-0057952-T01-IH3 P-0057326-T05-IH3 P-0058284-T01-IH3 P-0058285-T01-IH3 P-0058288-T01-IH3 P-0058743-T01-IH3 P-0056488-T02-IH3 P-0059151-T01-IH3 P-0059735-T01-IH3 P-0060356-T01-IH3 P-0059151-T02-IH3 P-0059151-T03-IH3 P-0052727-T01-IH3 P-0029877-T01-IH3 P-0034951-T01-IH3 P-0035683-T01-IH3 P-0036066-T01-IH3 P-0036996-T01-IH3 P-0037017-T01-IH3 P-0037930-T03-IH3 P-0047128-T07-IH3 P-0057326-T11-IH3 P-0055672-T01-IH3 P-0040896-T03-XS1 P-0057326-T04-XS1 P-0055415-T03-XS1 P-0059151-T05-XS1 \ No newline at end of file diff --git a/public/makeanimpact_ccr_2023/data_clinical_patient.txt b/public/makeanimpact_ccr_2023/data_clinical_patient.txt index e23611f8bb..e33c46aea1 100644 --- a/public/makeanimpact_ccr_2023/data_clinical_patient.txt +++ b/public/makeanimpact_ccr_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:ed47f45415c893e9e8cf6e24adebc5e506abf4a3475b8b75991c279b925208a1 -size 24330 +oid sha256:ac09226113077fa8bc5b79f7ee67002eb630f16db85209f0ad21505c2f2bd8da +size 24036 diff --git a/public/makeanimpact_ccr_2023/data_clinical_sample.txt b/public/makeanimpact_ccr_2023/data_clinical_sample.txt index 8a3da831c6..30390c723e 100644 --- a/public/makeanimpact_ccr_2023/data_clinical_sample.txt +++ b/public/makeanimpact_ccr_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:a1894495e86dea5d499f66480c25a6d6336116fc982b25a72da8e09ccf50f9b3 -size 17326 +oid sha256:aefd27dce6be24b0b268935132b00df8161edabc7b1a6b544955f97981050131 +size 20314 diff --git a/public/makeanimpact_ccr_2023/data_gene_panel_matrix.txt b/public/makeanimpact_ccr_2023/data_gene_panel_matrix.txt index 3d7ce2865e..e6fb2086af 100644 --- a/public/makeanimpact_ccr_2023/data_gene_panel_matrix.txt +++ b/public/makeanimpact_ccr_2023/data_gene_panel_matrix.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:30c96fcb5c32a8a099aa04eea76bb092a17212f58c4667424824c3f646914dd7 -size 10507 +oid sha256:6255fd5fc9900cd3c3be5600bd7c526e352a0f23fff6d9562fbd657a7463f794 +size 10621 diff --git a/public/mbn_sfu_2023/LICENSE b/public/mbn_sfu_2023/LICENSE new file mode 100644 index 0000000000..d5f3c4b535 --- /dev/null +++ b/public/mbn_sfu_2023/LICENSE @@ -0,0 +1 @@ +The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license. diff --git a/public/mbn_sfu_2023/case_lists/cases_all.txt b/public/mbn_sfu_2023/case_lists/cases_all.txt new file mode 100644 index 0000000000..10f47feeb2 --- /dev/null +++ b/public/mbn_sfu_2023/case_lists/cases_all.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: mbn_sfu_2023 +stable_id: mbn_sfu_2023_all +case_list_name: All samples +case_list_description: All samples (297 samples) +case_list_category: all_cases_in_study +case_list_ids: BLGSP-71-32-00697-01A-01 HTMCP-01-06-00443-01A-01 BLGSP-71-30-00642-01A-01 BLGSP-71-22-00337-01A-01 BLGSP-71-19-00122-09A.1- BLGSP-71-08-00025-01A-01 BLGSP-71-06-00252-01A-01 BLGSP-71-06-00139-01A-01 BLGSP-71-06-00088-01A-01 BLGSP-71-30-00777-01A-01 BLGSP-71-06-00285-01A-01 BLGSP-71-22-00347-01A-12 BLGSP-71-32-00691-01A-01 BLGSP-71-06-00154-01A-01 BLGSP-71-23-00361-01A-01 BLGSP-71-06-00286-01A-01 BLGSP-71-30-00679-01A-01 BLGSP-71-30-00651-01A-01 BLGSP-71-19-00522-09A-01 BLGSP-71-06-00081-01D-12 BLGSP-71-06-00093-01A-01 BL41 BLGSP-71-26-00397-01A-01 BLGSP-71-06-00001-01A-11 BLGSP-71-19-00519-01A-01 Seraphina BLGSP-71-30-00652-01A-01 BLGSP-71-23-00406-01A-01 BLGSP-71-06-00190-01B-01 BLGSP-71-23-00436-01A-01 BLGSP-71-06-00084-01A-01 BLGSP-71-21-00186-01A-01 BLGSP-71-08-00219-01A-11 BLGSP-71-17-00237-01A-01 BLGSP-71-06-00089-01A-01 BLGSP-71-23-00446-01A-02 BLGSP-71-19-00102-01A-02 Mutu BLGSP-71-23-00448-01A-02 HTMCP-01-15-00367-01A-01 BLGSP-71-30-00662-01A-01 BLGSP-71-30-00677-01A-01 BLGSP-71-19-00129-01A-01 BLGSP-71-08-00191-01A-11 BLGSP-71-08-00042-01B-01 BLGSP-71-19-00126-09A-01 BLGSP-71-06-00253-01A-01 BLGSP-71-30-00640-01A-01 BLGSP-71-30-00681-01A-01 BLGSP-71-19-00104-01A-01 BL2 BLGSP-71-26-00398-01A-01 BLGSP-71-06-00015-01A-21 BLGSP-71-06-00144-01A-01 HTMCP-01-06-00299-01A-01 Daudi Namalwa BLGSP-71-06-00013-01B-11 BLGSP-71-08-00432-01B-01 HTMCP-01-06-00314-01A-01 BLGSP-71-08-00050-01A-11 BLGSP-71-19-00105-01A-01 BLGSP-71-06-00155-01A-01 BLGSP-71-08-00036-01A-01 BLGSP-71-19-00123-09A.1- BLGSP-71-30-00676-01A-01 HTMCP-01-06-00036-01E CA46 BLGSP-71-06-00137-01A-01 BLGSP-71-06-00255-01C-01 BLGSP-71-06-00087-01A-01 BLGSP-71-19-00115-01A-01 HTMCP-01-06-00232-01A-01 BLGSP-71-30-00680-01A-01 DG-75 BLGSP-71-22-00339-01A-01 BLGSP-71-06-00019-01A-11 BLGSP-71-08-00199-01A-11 BLGSP-71-30-00641-01A-01 BLGSP-71-19-00521-09A-01 BLGSP-71-32-00693-01A-01 BLGSP-71-30-00647-01A-01 BLGSP-71-30-00656-01A-01 HTMCP-01-06-00606-01A-01 BLGSP-71-30-00663-01A-01 BLGSP-71-06-00002-01C-01 BLGSP-71-06-00004-01A-11 BLGSP-71-27-00428-01A-01 BLGSP-71-30-00665-01A-01 HTMCP-01-06-00105-01A-01 BLGSP-71-27-00422-01A-01 BLGSP-71-06-00158-01A-01 HTMCP-01-10-00778-01A-01 BLGSP-71-06-00165-01A-01 BLGSP-71-06-00080-01A-11 BLGSP-71-22-00330-01A-01 HTMCP-01-02-00013-01A-01 BLGSP-71-27-00421-01A-01 BLGSP-71-17-00235-01B-01 HTMCP-01-15-00370-01A-01 BLGSP-71-17-00359-01A-01 Raji HTMCP-01-06-00594-01A-01 BLGSP-71-30-00678-01A-01 BLGSP-71-26-00399-01A-01 BLGSP-71-30-00657-01A-01 BLGSP-71-08-00212-01A-11 BLGSP-71-17-00232-01B-13 BLGSP-71-08-00035-01A-01 HTMCP-01-06-00242-01A-01 BLGSP-71-23-00456-01A-02 Thomas BLGSP-71-23-00462-01A-01 BLGSP-71-06-00148-01A-01 BLGSP-71-27-00429-01A-01 BLGSP-71-08-00213-01A-11 BLGSP-71-21-00188-01A-04 BLGSP-71-22-00332-01A-01 BLGSP-71-27-00411-01A-01 BLGSP-71-06-00142-01A-01 BLGSP-71-32-00695-01A-01 Defauw BLGSP-71-06-00078-01A-11 HTMCP-01-06-00227-01A-01 BLGSP-71-23-00409-01A-01 BLGSP-71-30-00637-01A-01 BLGSP-71-06-00020-01A-11 HTMCP-01-06-00611-01A-01 BLGSP-71-32-00699-01A-01 BLGSP-71-06-00007-01A-11 BLGSP-71-30-00673-01A-01 BLGSP-71-06-00146-01C-01 BLGSP-71-23-00401-01A-01 BLGSP-71-08-00210-01A-11 HTMCP-01-06-00422-01A-01 BLGSP-71-30-00654-01A-01 BLGSP-71-27-00513-01A-01 BLGSP-71-23-00468-01A-01 HTMCP-01-16-00265-01A-01 BLGSP-71-06-00149-01A-01 BLGSP-71-06-00164-01C-01 HTMCP-01-02-00017-01A-01 BLGSP-71-06-00169-01B-01 HTMCP-01-06-00255-01A-01 HTMCP-01-06-00526-01A-01 BLGSP-71-27-00512-01A-01 BLGSP-71-06-00072-01A-11 BLGSP-71-30-00644-01A-01 BLGSP-71-30-00638-01A-01 BLGSP-71-23-00410-01B-01 BLGSP-71-06-00012-01A-11 BL70 BLGSP-71-19-00113-01A-01 BLGSP-71-30-00682-01A-01 BLGSP-71-19-00125-09A-01 BLGSP-71-08-00217-01A-01 BLGSP-71-23-00404-01A-01 BLGSP-71-06-00071-01B-11 HTMCP-01-06-00500-01A-01 BLGSP-71-19-00108-01A-11 BLGSP-71-06-00098-01A-01 BLGSP-71-27-00425-01A-01 BLGSP-71-27-00430-01A-01 BLGSP-71-22-00335-01A-01 BLGSP-71-23-00470-01A-01 BLGSP-71-08-00205-01A-11 BLGSP-71-30-00781-01A-01 BLGSP-71-06-00166-01B-01 BLGSP-71-22-00338-01A-13 HTMCP-01-07-00336-01A-01 BLGSP-71-17-00238-01A-15 HTMCP-01-06-00185-01A-01 BLGSP-71-06-00094-01A-01 BLGSP-71-06-00171-01A-01 BLGSP-71-06-00086-01A-01 BLGSP-71-23-00367-01A-01 BLGSP-71-30-00655-01A-01 BLGSP-71-06-00277-01A-01 BLGSP-71-19-00520-09A-01 BLGSP-71-06-00008-01A-11 BLGSP-71-06-00074-01A-11 HTMCP-01-06-00206-01A-01 BLGSP-71-27-00424-01A-01 BLGSP-71-23-00408-01A-01 BLGSP-71-06-00251-01C-01 BLGSP-71-30-00669-01A-01 BLGSP-71-30-00778-01A-01 BLGSP-71-06-00076-01A-11 HTMCP-01-06-00146-01A-01 BLGSP-71-08-00204-01A-11 BLGSP-71-32-00694-01A-01 BLGSP-71-19-00128-09A.1- BLGSP-71-17-00234-01A-01 HTMCP-01-06-00310-01B-01 Akata BLGSP-71-30-00780-01A-01 BLGSP-71-06-00177-01A-01 BLGSP-71-23-00452-01A-01 BLGSP-71-21-00185-01A-01 BLGSP-71-06-00281-01A-01 BLGSP-71-23-00445-01A-01 HTMCP-01-20-00272-01A-01 BLGSP-71-08-00033-01A-01 BLGSP-71-30-00645-01A-01 BLGSP-71-06-00174-01A-01 BLGSP-71-30-00643-01A-01 BLGSP-71-30-00648-01A-01 BLGSP-71-06-00159-01A-01 BLGSP-71-19-00107-01A-01 HTMCP-01-06-00175-01A-01 BLGSP-71-08-00022-01A-01 HTMCP-01-06-00497-01A-01 HTMCP-01-06-00306-01A-01 JIYOYE BLGSP-71-30-00779-01A-01 BLGSP-71-08-00023-01A-01 HTMCP-01-01-00003-01D-03 BLGSP-71-08-00041-01A-01 BLGSP-71-23-00442-01A-01 BLGSP-71-30-00653-01A-01 HTMCP-01-06-00563-01A-01 BLGSP-71-06-00160-01A-03 BLGSP-71-08-00194-01A-11 BLGSP-71-26-00396-01A-01 BLGSP-71-06-00011-01A-11 BLGSP-71-27-00509-01A-01 BLGSP-71-27-00415-01A-01 BLGSP-71-06-00162-01A-01 BLGSP-71-06-00095-01A-01 HTMCP-01-06-00253-01A-01 BLGSP-71-23-00370-01A-01 BLGSP-71-22-00334-01A-01 BLGSP-71-19-00110-01A.1- BLGSP-71-06-00288-01A-01 BLGSP-71-19-00133-09A.1- BLGSP-71-30-00666-01A-01 EB-2 EB-3 BLGSP-71-23-00433-01A-02 BLGSP-71-30-00649-01A-01 GA-10 BLGSP-71-06-00283-01A-01 BLGSP-71-06-00085-01A-01 BLGSP-71-30-00672-01A-01 BLGSP-71-08-00197-01A-11 HTMCP-01-01-00451-01A-01 BLGSP-71-30-00658-01A-01 BLGSP-71-22-00333-01A-15 BLGSP-71-21-00187-01A-01 HTMCP-01-10-00160-01A-01 BLGSP-71-06-00005-01A-21 HTMCP-01-06-00634-01A-01 HTMCP-01-01-00012-01A-01 BLGSP-71-30-00670-01A-01 BL30 BLUE-1 HTMCP-01-06-00485-01A-01 BLGSP-71-23-00405-01A-01 BLGSP-71-08-00026-01B-01 BLGSP-71-08-00207-01A-11 HTMCP-01-06-00136-01A-01 BLGSP-71-06-00280-01A-01 HTMCP-01-06-00307-01A-01 BLGSP-71-32-00698-01B-03 BLGSP-71-08-00206-01A-11 BLGSP-71-30-00667-01A-01 BLGSP-71-30-00660-01A-01 BLGSP-71-17-00356-01A-01 BLGSP-71-30-00776-01A-01 BLGSP-71-30-00661-01A-01 Gumbus BLGSP-71-23-00362-01A-01 BLGSP-71-19-00523-09A-01 BLGSP-71-19-00127-04A.1- BLGSP-71-23-00437-01A-01 BLGSP-71-27-00414-01A-01 BLGSP-71-21-00243-01A-11 Ramos BLGSP-71-19-00116-01A-01 BLGSP-71-06-00172-01A-01 BLGSP-71-06-00090-01A-01 BLGSP-71-30-00671-01A-01 BLGSP-71-06-00016-01A-01 DND39 BLGSP-71-30-00664-01A-01 BLGSP-71-23-00440-01A-01 BLGSP-71-17-00357-01B-09 BLGSP-71-08-00200-01A-11 BLGSP-71-30-00675-01A-01 BLGSP-71-06-00178-01A-01 HTMCP-01-06-00419-01B-01 BLGSP-71-06-00180-01A-01 BLGSP-71-32-00701-01A-01 BLGSP-71-27-00420-01A-01 HTMCP-01-06-00121-01A-01 HTMCP-01-15-00366-01A-01 BLGSP-71-08-00038-01A-01 diff --git a/public/mbn_sfu_2023/case_lists/cases_sequenced.txt b/public/mbn_sfu_2023/case_lists/cases_sequenced.txt new file mode 100644 index 0000000000..eeb6688e43 --- /dev/null +++ b/public/mbn_sfu_2023/case_lists/cases_sequenced.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: mbn_sfu_2023 +stable_id: mbn_sfu_2023_sequenced +case_list_name: Samples with mutation data +case_list_description: Samples with mutation data (278 samples) +case_list_category: all_cases_with_mutation_data +case_list_ids: HTMCP-01-06-00526-01A-01 BLGSP-71-22-00337-01A-01 HTMCP-01-06-00443-01A-01 BLGSP-71-06-00072-01A-11 BLGSP-71-30-00638-01A-01 BLGSP-71-19-00127-04A.1- BLGSP-71-06-00012-01A-11 BL70 BLGSP-71-19-00113-01A-01 BLGSP-71-32-00697-01A-01 BLGSP-71-19-00125-09A-01 BLGSP-71-19-00122-09A.1- BLGSP-71-08-00217-01A-01 BLGSP-71-23-00404-01A-01 BLGSP-71-06-00071-01B-11 BLGSP-71-08-00025-01A-01 BLGSP-71-06-00098-01A-01 BLGSP-71-06-00139-01A-01 BLGSP-71-06-00088-01A-01 BLGSP-71-27-00430-01A-01 BLGSP-71-21-00243-01A-11 BLGSP-71-06-00285-01A-01 BLGSP-71-22-00347-01A-12 BLGSP-71-32-00691-01A-01 HTMCP-01-15-00370-01A-01 BLGSP-71-06-00154-01A-01 BLGSP-71-08-00205-01A-11 BLGSP-71-23-00361-01A-01 BLGSP-71-27-00415-01A-01 BLGSP-71-30-00781-01A-01 BLGSP-71-06-00286-01A-01 BLGSP-71-06-00166-01B-01 BLGSP-71-30-00679-01A-01 BLGSP-71-23-00410-01B-01 HTMCP-01-07-00336-01A-01 BLGSP-71-19-00522-09A-01 BLGSP-71-06-00081-01D-12 HTMCP-01-06-00185-01A-01 BLGSP-71-06-00093-01A-01 BLGSP-71-06-00094-01A-01 BLGSP-71-06-00171-01A-01 BLGSP-71-06-00001-01A-11 BLGSP-71-19-00519-01A-01 BLGSP-71-08-00210-01A-11 HTMCP-01-06-00299-01A-01 Seraphina BLGSP-71-30-00652-01A-01 BLGSP-71-30-00655-01A-01 BLGSP-71-06-00190-01B-01 BLGSP-71-06-00277-01A-01 BLGSP-71-23-00436-01A-01 BLGSP-71-06-00084-01A-01 BLGSP-71-19-00520-09A-01 BLGSP-71-06-00008-01A-11 BLGSP-71-06-00074-01A-11 BLGSP-71-08-00219-01A-11 BLGSP-71-17-00237-01A-01 BLGSP-71-27-00424-01A-01 BLGSP-71-23-00408-01A-01 BLGSP-71-23-00446-01A-02 BLGSP-71-30-00682-01A-01 BLGSP-71-06-00251-01C-01 Mutu BLGSP-71-30-00669-01A-01 BLGSP-71-30-00778-01A-01 BLGSP-71-06-00076-01A-11 HTMCP-01-06-00146-01A-01 BLGSP-71-08-00199-01A-11 BLGSP-71-06-00288-01A-01 HTMCP-01-15-00367-01A-01 BLGSP-71-30-00662-01A-01 BLGSP-71-30-00677-01A-01 BLGSP-71-06-00089-01A-01 BLGSP-71-19-00129-01A-01 BLGSP-71-19-00128-09A.1- BLGSP-71-30-00670-01A-01 HTMCP-01-06-00310-01B-01 Akata BLGSP-71-08-00042-01B-01 BLGSP-71-19-00126-09A-01 BLGSP-71-30-00780-01A-01 BLGSP-71-06-00177-01A-01 BLGSP-71-06-00253-01A-01 BLGSP-71-21-00185-01A-01 BLGSP-71-30-00681-01A-01 BLGSP-71-06-00281-01A-01 BLGSP-71-23-00445-01A-01 BLGSP-71-19-00104-01A-01 BLGSP-71-08-00033-01A-01 BLGSP-71-30-00645-01A-01 BL2 BLGSP-71-26-00398-01A-01 BLGSP-71-08-00432-01B-01 BLGSP-71-06-00015-01A-21 BLGSP-71-21-00188-01A-04 BLGSP-71-06-00144-01A-01 BLGSP-71-06-00174-01A-01 HTMCP-01-02-00013-01A-01 Daudi BLGSP-71-06-00252-01A-01 Namalwa BLGSP-71-30-00648-01A-01 BLGSP-71-06-00159-01A-01 BLGSP-71-06-00013-01B-11 BLGSP-71-27-00422-01A-01 HTMCP-01-06-00175-01A-01 BLGSP-71-08-00022-01A-01 BLGSP-71-27-00425-01A-01 BLGSP-71-08-00050-01A-11 BLGSP-71-27-00512-01A-01 HTMCP-01-06-00497-01A-01 HTMCP-01-06-00306-01A-01 BLGSP-71-19-00105-01A-01 BLGSP-71-06-00155-01A-01 BLGSP-71-30-00777-01A-01 BLGSP-71-23-00406-01A-01 JIYOYE BLGSP-71-30-00779-01A-01 BLGSP-71-19-00123-09A.1- BLGSP-71-30-00643-01A-01 BLGSP-71-08-00023-01A-01 BLGSP-71-23-00405-01A-01 HTMCP-01-01-00003-01D-03 HTMCP-01-06-00036-01E BLGSP-71-23-00442-01A-01 BLGSP-71-30-00653-01A-01 HTMCP-01-06-00563-01A-01 CA46 BLGSP-71-06-00137-01A-01 BLGSP-71-06-00255-01C-01 BLGSP-71-06-00160-01A-03 BLGSP-71-19-00115-01A-01 BLGSP-71-26-00396-01A-01 BLGSP-71-06-00011-01A-11 HTMCP-01-06-00232-01A-01 BLGSP-71-27-00509-01A-01 DG-75 BLGSP-71-06-00019-01A-11 BLGSP-71-06-00162-01A-01 BLGSP-71-06-00095-01A-01 HTMCP-01-06-00253-01A-01 BLGSP-71-17-00235-01B-01 BLGSP-71-21-00186-01A-01 BLGSP-71-08-00204-01A-11 BLGSP-71-32-00694-01A-01 BLGSP-71-08-00036-01A-01 BLGSP-71-19-00110-01A.1- BLGSP-71-30-00641-01A-01 BLGSP-71-19-00133-09A.1- BLGSP-71-19-00521-09A-01 BLGSP-71-32-00693-01A-01 BLGSP-71-30-00647-01A-01 BLGSP-71-30-00656-01A-01 BLGSP-71-30-00673-01A-01 BLGSP-71-30-00666-01A-01 EB-2 EB-3 HTMCP-01-06-00606-01A-01 BLGSP-71-08-00038-01A-01 BLGSP-71-06-00002-01C-01 BLGSP-71-30-00663-01A-01 BLGSP-71-23-00433-01A-02 GA-10 BLGSP-71-06-00283-01A-01 BLGSP-71-06-00085-01A-01 BLGSP-71-23-00440-01A-01 BLGSP-71-30-00665-01A-01 BLGSP-71-06-00004-01A-11 BLGSP-71-08-00194-01A-11 BLGSP-71-30-00672-01A-01 BLGSP-71-06-00087-01A-01 BLGSP-71-08-00197-01A-11 HTMCP-01-10-00778-01A-01 BLGSP-71-08-00200-01A-11 BLGSP-71-06-00165-01A-01 BLGSP-71-06-00080-01A-11 HTMCP-01-01-00451-01A-01 BLGSP-71-30-00658-01A-01 DND39 BLGSP-71-27-00421-01A-01 BLGSP-71-21-00187-01A-01 HTMCP-01-10-00160-01A-01 BLGSP-71-17-00359-01A-01 Raji HTMCP-01-06-00594-01A-01 BLGSP-71-30-00678-01A-01 BLGSP-71-06-00005-01A-21 HTMCP-01-06-00634-01A-01 BLGSP-71-26-00399-01A-01 BLGSP-71-30-00657-01A-01 BLGSP-71-08-00212-01A-11 BLGSP-71-17-00232-01B-13 BLGSP-71-08-00035-01A-01 BL30 BLUE-1 HTMCP-01-20-00272-01A-01 HTMCP-01-06-00242-01A-01 HTMCP-01-06-00485-01A-01 HTMCP-01-06-00105-01A-01 BLGSP-71-30-00676-01A-01 BLGSP-71-17-00234-01A-01 BLGSP-71-30-00680-01A-01 BLGSP-71-08-00041-01A-01 BLGSP-71-08-00207-01A-11 BLGSP-71-08-00191-01A-11 HTMCP-01-01-00012-01A-01 BLGSP-71-32-00699-01A-01 BLGSP-71-23-00462-01A-01 BLGSP-71-06-00280-01A-01 HTMCP-01-06-00307-01A-01 BLGSP-71-06-00148-01A-01 BLGSP-71-30-00651-01A-01 BLGSP-71-32-00698-01B-03 BLGSP-71-06-00078-01A-11 BLGSP-71-08-00206-01A-11 BLGSP-71-06-00158-01A-01 BLGSP-71-30-00667-01A-01 BLGSP-71-30-00660-01A-01 BLGSP-71-27-00429-01A-01 BLGSP-71-30-00776-01A-01 BLGSP-71-30-00661-01A-01 BLGSP-71-08-00213-01A-11 Gumbus BLGSP-71-06-00007-01A-11 BLGSP-71-23-00362-01A-01 BLGSP-71-19-00523-09A-01 BLGSP-71-06-00142-01A-01 BLGSP-71-27-00414-01A-01 BLGSP-71-30-00649-01A-01 BLGSP-71-32-00695-01A-01 HTMCP-01-06-00206-01A-01 Ramos Defauw BLGSP-71-17-00356-01A-01 HTMCP-01-06-00227-01A-01 BLGSP-71-06-00169-01B-01 BLGSP-71-23-00409-01A-01 BLGSP-71-17-00357-01B-09 BLGSP-71-19-00116-01A-01 BL41 BLGSP-71-06-00172-01A-01 BLGSP-71-06-00090-01A-01 BLGSP-71-30-00671-01A-01 BLGSP-71-06-00020-01A-11 BLGSP-71-17-00238-01A-15 BLGSP-71-26-00397-01A-01 BLGSP-71-06-00016-01A-01 HTMCP-01-06-00611-01A-01 BLGSP-71-22-00339-01A-01 BLGSP-71-30-00664-01A-01 HTMCP-01-06-00136-01A-01 BLGSP-71-22-00332-01A-01 HTMCP-01-06-00314-01A-01 BLGSP-71-06-00146-01C-01 BLGSP-71-27-00411-01A-01 BLGSP-71-23-00401-01A-01 BLGSP-71-06-00086-01A-01 BLGSP-71-30-00642-01A-01 HTMCP-01-06-00422-01A-01 BLGSP-71-30-00654-01A-01 HTMCP-01-06-00500-01A-01 BLGSP-71-30-00675-01A-01 BLGSP-71-27-00513-01A-01 BLGSP-71-06-00178-01A-01 HTMCP-01-06-00419-01B-01 BLGSP-71-06-00180-01A-01 BLGSP-71-30-00637-01A-01 BLGSP-71-32-00701-01A-01 BLGSP-71-27-00420-01A-01 Thomas HTMCP-01-16-00265-01A-01 BLGSP-71-06-00149-01A-01 HTMCP-01-06-00121-01A-01 BLGSP-71-06-00164-01C-01 HTMCP-01-15-00366-01A-01 HTMCP-01-02-00017-01A-01 BLGSP-71-27-00428-01A-01 HTMCP-01-06-00255-01A-01 diff --git a/public/mbn_sfu_2023/case_lists/cases_sv.txt b/public/mbn_sfu_2023/case_lists/cases_sv.txt new file mode 100644 index 0000000000..f6eff2a0a3 --- /dev/null +++ b/public/mbn_sfu_2023/case_lists/cases_sv.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: mbn_sfu_2023 +stable_id: mbn_sfu_2023_sv +case_list_name: Samples with SV data +case_list_description: All samples with SV data (254 samples) +case_list_category: all_cases_with_sv_data +case_list_ids: BLGSP-71-06-00001-01A-11 BLGSP-71-06-00002-01C-01 BLGSP-71-06-00004-01A-11 BLGSP-71-06-00005-01A-21 BLGSP-71-06-00007-01A-11 BLGSP-71-06-00008-01A-11 BLGSP-71-06-00011-01A-11 BLGSP-71-06-00012-01A-11 BLGSP-71-06-00013-01B-11 BLGSP-71-06-00015-01A-21 BLGSP-71-06-00016-01A-01 BLGSP-71-06-00019-01A-11 BLGSP-71-06-00020-01A-11 BLGSP-71-06-00071-01B-11 BLGSP-71-06-00072-01A-11 BLGSP-71-06-00074-01A-11 BLGSP-71-06-00076-01A-11 BLGSP-71-06-00078-01A-11 BLGSP-71-06-00080-01A-11 BLGSP-71-06-00081-01D-12 BLGSP-71-06-00084-01A-01 BLGSP-71-06-00085-01A-01 BLGSP-71-06-00086-01A-01 BLGSP-71-06-00087-01A-01 BLGSP-71-06-00088-01A-01 BLGSP-71-06-00089-01A-01 BLGSP-71-06-00090-01A-01 BLGSP-71-06-00093-01A-01 BLGSP-71-06-00094-01A-01 BLGSP-71-06-00095-01A-01 BLGSP-71-06-00098-01A-01 BLGSP-71-06-00137-01A-01 BLGSP-71-06-00139-01A-01 BLGSP-71-06-00142-01A-01 BLGSP-71-06-00144-01A-01 BLGSP-71-06-00146-01C-01 BLGSP-71-06-00148-01A-01 BLGSP-71-06-00149-01A-01 BLGSP-71-06-00154-01A-01 BLGSP-71-06-00155-01A-01 BLGSP-71-06-00158-01A-01 BLGSP-71-06-00159-01A-01 BLGSP-71-06-00160-01A-03 BLGSP-71-06-00162-01A-01 BLGSP-71-06-00164-01C-01 BLGSP-71-06-00165-01A-01 BLGSP-71-06-00166-01B-01 BLGSP-71-06-00169-01B-01 BLGSP-71-06-00171-01A-01 BLGSP-71-06-00172-01A-01 BLGSP-71-06-00174-01A-01 BLGSP-71-06-00177-01A-01 BLGSP-71-06-00178-01A-01 BLGSP-71-06-00180-01A-01 BLGSP-71-06-00190-01B-01 BLGSP-71-06-00251-01C-01 BLGSP-71-06-00252-01A-01 BLGSP-71-06-00253-01A-01 BLGSP-71-06-00255-01C-01 BLGSP-71-06-00277-01A-01 BLGSP-71-06-00280-01A-01 BLGSP-71-06-00281-01A-01 BLGSP-71-06-00283-01A-01 BLGSP-71-06-00285-01A-01 BLGSP-71-06-00286-01A-01 BLGSP-71-06-00288-01A-01 BLGSP-71-08-00022-01A-01 BLGSP-71-08-00023-01A-01 BLGSP-71-08-00025-01A-01 BLGSP-71-08-00026-01B-01 BLGSP-71-08-00033-01A-01 BLGSP-71-08-00035-01A-01 BLGSP-71-08-00036-01A-01 BLGSP-71-08-00038-01A-01 BLGSP-71-08-00041-01A-01 BLGSP-71-08-00042-01B-01 BLGSP-71-08-00050-01A-11 BLGSP-71-08-00191-01A-11 BLGSP-71-08-00194-01A-11 BLGSP-71-08-00197-01A-11 BLGSP-71-08-00199-01A-11 BLGSP-71-08-00200-01A-11 BLGSP-71-08-00204-01A-11 BLGSP-71-08-00205-01A-11 BLGSP-71-08-00206-01A-11 BLGSP-71-08-00207-01A-11 BLGSP-71-08-00210-01A-11 BLGSP-71-08-00212-01A-11 BLGSP-71-08-00213-01A-11 BLGSP-71-08-00217-01A-01 BLGSP-71-08-00219-01A-11 BLGSP-71-08-00432-01B-01 BLGSP-71-17-00232-01B-13 BLGSP-71-17-00234-01A-01 BLGSP-71-17-00235-01B-01 BLGSP-71-17-00237-01A-01 BLGSP-71-17-00238-01A-15 BLGSP-71-17-00356-01A-01 BLGSP-71-17-00357-01B-09 BLGSP-71-17-00359-01A-01 BLGSP-71-19-00102-01A-02 BLGSP-71-19-00104-01A-01 BLGSP-71-19-00105-01A-01 BLGSP-71-19-00107-01A-01 BLGSP-71-19-00108-01A-11 BLGSP-71-19-00110-01A.1- BLGSP-71-19-00113-01A-01 BLGSP-71-19-00115-01A-01 BLGSP-71-19-00116-01A-01 BLGSP-71-19-00122-09A.1- BLGSP-71-19-00123-09A.1- BLGSP-71-19-00125-09A-01 BLGSP-71-19-00126-09A-01 BLGSP-71-19-00127-04A.1- BLGSP-71-19-00128-09A.1- BLGSP-71-19-00129-01A-01 BLGSP-71-19-00133-09A.1- BLGSP-71-19-00519-01A-01 BLGSP-71-19-00520-09A-01 BLGSP-71-19-00521-09A-01 BLGSP-71-19-00522-09A-01 BLGSP-71-19-00523-09A-01 BLGSP-71-21-00185-01A-01 BLGSP-71-21-00186-01A-01 BLGSP-71-21-00187-01A-01 BLGSP-71-21-00188-01A-04 BLGSP-71-21-00243-01A-11 BLGSP-71-22-00330-01A-01 BLGSP-71-22-00332-01A-01 BLGSP-71-22-00333-01A-15 BLGSP-71-22-00334-01A-01 BLGSP-71-22-00335-01A-01 BLGSP-71-22-00337-01A-01 BLGSP-71-22-00338-01A-13 BLGSP-71-22-00339-01A-01 BLGSP-71-22-00347-01A-12 BLGSP-71-23-00361-01A-01 BLGSP-71-23-00362-01A-01 BLGSP-71-23-00367-01A-01 BLGSP-71-23-00370-01A-01 BLGSP-71-23-00401-01A-01 BLGSP-71-23-00404-01A-01 BLGSP-71-23-00405-01A-01 BLGSP-71-23-00406-01A-01 BLGSP-71-23-00408-01A-01 BLGSP-71-23-00409-01A-01 BLGSP-71-23-00410-01B-01 BLGSP-71-23-00433-01A-02 BLGSP-71-23-00436-01A-01 BLGSP-71-23-00437-01A-01 BLGSP-71-23-00440-01A-01 BLGSP-71-23-00442-01A-01 BLGSP-71-23-00445-01A-01 BLGSP-71-23-00446-01A-02 BLGSP-71-23-00448-01A-02 BLGSP-71-23-00452-01A-01 BLGSP-71-23-00456-01A-02 BLGSP-71-23-00462-01A-01 BLGSP-71-23-00468-01A-01 BLGSP-71-23-00470-01A-01 BLGSP-71-26-00396-01A-01 BLGSP-71-26-00397-01A-01 BLGSP-71-26-00398-01A-01 BLGSP-71-26-00399-01A-01 BLGSP-71-27-00411-01A-01 BLGSP-71-27-00414-01A-01 BLGSP-71-27-00415-01A-01 BLGSP-71-27-00420-01A-01 BLGSP-71-27-00421-01A-01 BLGSP-71-27-00422-01A-01 BLGSP-71-27-00424-01A-01 BLGSP-71-27-00425-01A-01 BLGSP-71-27-00428-01A-01 BLGSP-71-27-00429-01A-01 BLGSP-71-27-00430-01A-01 BLGSP-71-27-00509-01A-01 BLGSP-71-27-00512-01A-01 BLGSP-71-27-00513-01A-01 Ramos BL2 BL41 DG-75 BL30 Gumbus DND39 BLUE-1 GA-10 Defauw Thomas CA46 Namalwa EB-3 Akata Seraphina JIYOYE EB-2 Raji BL70 Daudi Mutu BLGSP-71-30-00637-01A-01 BLGSP-71-30-00638-01A-01 BLGSP-71-30-00640-01A-01 BLGSP-71-30-00641-01A-01 BLGSP-71-30-00642-01A-01 BLGSP-71-30-00643-01A-01 BLGSP-71-30-00644-01A-01 BLGSP-71-30-00645-01A-01 BLGSP-71-30-00647-01A-01 BLGSP-71-30-00648-01A-01 BLGSP-71-30-00649-01A-01 BLGSP-71-30-00651-01A-01 BLGSP-71-30-00652-01A-01 BLGSP-71-30-00653-01A-01 BLGSP-71-30-00654-01A-01 BLGSP-71-30-00655-01A-01 BLGSP-71-30-00656-01A-01 BLGSP-71-30-00657-01A-01 BLGSP-71-30-00658-01A-01 BLGSP-71-30-00660-01A-01 BLGSP-71-30-00661-01A-01 BLGSP-71-30-00662-01A-01 BLGSP-71-30-00663-01A-01 BLGSP-71-30-00664-01A-01 BLGSP-71-30-00665-01A-01 BLGSP-71-30-00666-01A-01 BLGSP-71-30-00667-01A-01 BLGSP-71-30-00669-01A-01 BLGSP-71-30-00670-01A-01 BLGSP-71-30-00671-01A-01 BLGSP-71-30-00672-01A-01 BLGSP-71-30-00673-01A-01 BLGSP-71-30-00675-01A-01 BLGSP-71-30-00676-01A-01 BLGSP-71-30-00677-01A-01 BLGSP-71-30-00678-01A-01 BLGSP-71-30-00679-01A-01 BLGSP-71-30-00680-01A-01 BLGSP-71-30-00681-01A-01 BLGSP-71-30-00682-01A-01 BLGSP-71-30-00776-01A-01 BLGSP-71-30-00777-01A-01 BLGSP-71-30-00778-01A-01 BLGSP-71-30-00779-01A-01 BLGSP-71-30-00780-01A-01 BLGSP-71-30-00781-01A-01 BLGSP-71-32-00691-01A-01 BLGSP-71-32-00693-01A-01 BLGSP-71-32-00694-01A-01 BLGSP-71-32-00695-01A-01 BLGSP-71-32-00697-01A-01 BLGSP-71-32-00698-01B-03 BLGSP-71-32-00699-01A-01 BLGSP-71-32-00701-01A-01 \ No newline at end of file diff --git a/public/mbn_sfu_2023/data_clinical_patient.txt b/public/mbn_sfu_2023/data_clinical_patient.txt new file mode 100644 index 0000000000..c5a67f6596 --- /dev/null +++ b/public/mbn_sfu_2023/data_clinical_patient.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1d7d6617d6014899b9d4dc8522e09b5f4769372469e4c650c6bd9000f1e42e93 +size 27820 diff --git a/public/mbn_sfu_2023/data_clinical_sample.txt b/public/mbn_sfu_2023/data_clinical_sample.txt new file mode 100644 index 0000000000..3c50ac4177 --- /dev/null +++ b/public/mbn_sfu_2023/data_clinical_sample.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d630cf0f78e42f0d12478bce79660b937f04add79e882a243ff8954bcc12f558 +size 37706 diff --git a/public/mbn_sfu_2023/data_mutational_signatures_contribution_SBS.txt b/public/mbn_sfu_2023/data_mutational_signatures_contribution_SBS.txt new file mode 100644 index 0000000000..966dc85425 --- /dev/null +++ b/public/mbn_sfu_2023/data_mutational_signatures_contribution_SBS.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1835ec1a7a528051ebd4237bbf3e0fd114f3ea79c3077f0c18b5939946b62aa8 +size 11947 diff --git a/public/mbn_sfu_2023/data_mutations.txt b/public/mbn_sfu_2023/data_mutations.txt new file mode 100644 index 0000000000..8c95a5e149 --- /dev/null +++ b/public/mbn_sfu_2023/data_mutations.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:260ad24ba07d3a309c347564ce6a24307244b46b6eba1b176c6800b9d32964b9 +size 15586356 diff --git a/public/mbn_sfu_2023/data_rna_seq_mrna_median_Zscores.txt b/public/mbn_sfu_2023/data_rna_seq_mrna_median_Zscores.txt new file mode 100644 index 0000000000..24fb79d71b --- /dev/null +++ b/public/mbn_sfu_2023/data_rna_seq_mrna_median_Zscores.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:01c24ef29233364d51954ec2e3ead6d8a080a087faca728a10e32c5bdf0807c1 +size 152164087 diff --git a/public/mbn_sfu_2023/data_sv.txt b/public/mbn_sfu_2023/data_sv.txt new file mode 100644 index 0000000000..6775a3a059 --- /dev/null +++ b/public/mbn_sfu_2023/data_sv.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d65600ac15d660a1a23da0a5728dec5b8babf1da5ca9847b16775049f0a8489 +size 14729 diff --git a/public/mbn_sfu_2023/meta_clinical_patient.txt b/public/mbn_sfu_2023/meta_clinical_patient.txt new file mode 100644 index 0000000000..8f6a093bd1 --- /dev/null +++ b/public/mbn_sfu_2023/meta_clinical_patient.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: mbn_sfu_2023 +data_filename: data_clinical_patient.txt +genetic_alteration_type: CLINICAL +datatype: PATIENT_ATTRIBUTES diff --git a/public/mbn_sfu_2023/meta_clinical_sample.txt b/public/mbn_sfu_2023/meta_clinical_sample.txt new file mode 100644 index 0000000000..05e2671931 --- /dev/null +++ b/public/mbn_sfu_2023/meta_clinical_sample.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: mbn_sfu_2023 +data_filename: data_clinical_sample.txt +genetic_alteration_type: CLINICAL +datatype: SAMPLE_ATTRIBUTES diff --git a/public/mbn_sfu_2023/meta_mutational_signatures_contribution_SBS.txt b/public/mbn_sfu_2023/meta_mutational_signatures_contribution_SBS.txt new file mode 100644 index 0000000000..7b07ec87e3 --- /dev/null +++ b/public/mbn_sfu_2023/meta_mutational_signatures_contribution_SBS.txt @@ -0,0 +1,12 @@ +cancer_study_identifier: mbn_sfu_2023 +genetic_alteration_type: GENERIC_ASSAY +generic_assay_type: MUTATIONAL_SIGNATURE +datatype: LIMIT-VALUE +stable_id: mutational_signatures_contribution_SBS +profile_name: mutational signatures contribution SBS +profile_description: Mutational signature contribution. +data_filename: data_mutational_signatures_contribution_SBS.txt +show_profile_in_analysis_tab: true +generic_entity_meta_properties: NAME,DESCRIPTION,URL +value_sort_order: DESC +pivot_threshold_value: 0.0 \ No newline at end of file diff --git a/public/mbn_sfu_2023/meta_mutations.txt b/public/mbn_sfu_2023/meta_mutations.txt new file mode 100644 index 0000000000..b7164786bf --- /dev/null +++ b/public/mbn_sfu_2023/meta_mutations.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: mbn_sfu_2023 +data_filename: data_mutations.txt +stable_id: mutations +genetic_alteration_type: MUTATION_EXTENDED +datatype: MAF +show_profile_in_analysis_tab: TRUE +profile_name: Mutations +profile_description: Mutation data from whole exome sequencing. diff --git a/public/mbn_sfu_2023/meta_rna_seq_mrna_median_Zscores.txt b/public/mbn_sfu_2023/meta_rna_seq_mrna_median_Zscores.txt new file mode 100644 index 0000000000..b5d4285853 --- /dev/null +++ b/public/mbn_sfu_2023/meta_rna_seq_mrna_median_Zscores.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: mbn_sfu_2023 +genetic_alteration_type: MRNA_EXPRESSION +datatype: Z-SCORE +stable_id: rna_seq_mrna_median_Zscores +show_profile_in_analysis_tab: false +profile_name: mRNA expression z-scores +profile_description: Expression levels z-scores +data_filename: data_rna_seq_mrna_median_Zscores.txt \ No newline at end of file diff --git a/public/mbn_sfu_2023/meta_study.txt b/public/mbn_sfu_2023/meta_study.txt new file mode 100644 index 0000000000..f075bcee61 --- /dev/null +++ b/public/mbn_sfu_2023/meta_study.txt @@ -0,0 +1,7 @@ +cancer_study_identifier: mbn_sfu_2023 +type_of_cancer: mbn +name: Mature B-Cell Neoplasms (Simon Fraser University, Blood 2023) +description: Whole-genome sequencing of 297 pediatric burrkitt lymphoma (BL) and diffuse large B-cell lymphoma (DLBCL) patient tumors and their matched normals. +pmid: 36201743 +citation: Thomas et al. Blood 2023 +reference_genome: hg38 diff --git a/public/mbn_sfu_2023/meta_sv.txt b/public/mbn_sfu_2023/meta_sv.txt new file mode 100644 index 0000000000..b4909c1b65 --- /dev/null +++ b/public/mbn_sfu_2023/meta_sv.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: mbn_sfu_2023 +data_filename: data_sv.txt +stable_id: structural_variants +genetic_alteration_type: STRUCTURAL_VARIANT +datatype: SV +show_profile_in_analysis_tab: TRUE +profile_name: Structural variants +profile_description: Structural Variant Data diff --git a/public/mtnn_msk_2022/case_lists/cases_all.txt b/public/mtnn_msk_2022/case_lists/cases_all.txt index 8a596f8ca9..828a65fb45 100644 --- a/public/mtnn_msk_2022/case_lists/cases_all.txt +++ b/public/mtnn_msk_2022/case_lists/cases_all.txt @@ -3,4 +3,4 @@ stable_id: mtnn_msk_2022_all case_list_name: All samples case_list_description: All samples (132 samples) case_list_category: all_cases_in_study -case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-IB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 \ No newline at end of file +case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-TB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 \ No newline at end of file diff --git a/public/mtnn_msk_2022/case_lists/cases_cna.txt b/public/mtnn_msk_2022/case_lists/cases_cna.txt index 568dd64b8b..6ffa96744a 100644 --- a/public/mtnn_msk_2022/case_lists/cases_cna.txt +++ b/public/mtnn_msk_2022/case_lists/cases_cna.txt @@ -3,4 +3,4 @@ stable_id: mtnn_msk_2022_cna case_list_name: Samples with CNA data case_list_description: Samples with CNA data (132 samples) case_list_category: all_cases_with_cna_data -case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-IB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 +case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-TB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 diff --git a/public/mtnn_msk_2022/case_lists/cases_cnaseq.txt b/public/mtnn_msk_2022/case_lists/cases_cnaseq.txt index 986d8dc8f0..f164fe53d0 100644 --- a/public/mtnn_msk_2022/case_lists/cases_cnaseq.txt +++ b/public/mtnn_msk_2022/case_lists/cases_cnaseq.txt @@ -3,4 +3,4 @@ stable_id: mtnn_msk_2022_cnaseq case_list_name: Samples with mutation and CNA data case_list_description: Samples with mutation and CNA data (132 samples) case_list_category: all_cases_with_mutation_and_cna_data -case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-IB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 +case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-TB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 diff --git a/public/mtnn_msk_2022/case_lists/cases_sequenced.txt b/public/mtnn_msk_2022/case_lists/cases_sequenced.txt index bf121e986c..bf5bf60c78 100644 --- a/public/mtnn_msk_2022/case_lists/cases_sequenced.txt +++ b/public/mtnn_msk_2022/case_lists/cases_sequenced.txt @@ -3,4 +3,4 @@ stable_id: mtnn_msk_2022_sequenced case_list_name: Samples with mutation data case_list_description: Samples with mutation data (132 samples) case_list_category: all_cases_with_mutation_data -case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 P-0035454-T01-IH3 P-0035538-T01-IH3 P-0036079-T01-IH3 P-0037019-T01-IH3 P-0038784-T01-IH3 P-0045646-T01-IH3 P-0049398-T02-IH3 P-0049402-T03-IH3 P-0052066-T02-IH3 P-0054084-T02-IH3 P-0054181-T01-IH3 P-0055570-T04-IH3 P-0057898-T01-IH3 P-0058829-T01-IH3 P-0060457-T02-IH3 P-0004994-T01-IM5 P-0008924-T01-IM5 P-0017072-T02-IH3 P-0006898-T01-IM5 P-0036194-T03-IH3 P-0036656-T01-IH3 P-0041407-T01-IH3 P-0042361-T01-IH3 P-0047519-T01-IH3 P-0060099-T05-IH3 P-0012932-T01-IM5 P-0032301-T01-IH3 P-0035684-T01-IH3 P-0056911-T01-IH3 P-0060740-T01-IH3 P-0022315-T02-IH3 P-0046681-T01-IH3 P-0007568-T01-IM5 P-0018326-T02-IH3 P-0023304-T02-IH3 P-0027969-T01-IH3 P-0030610-T01-IH3 P-0035346-T02-IH3 P-0047014-T01-IH3 P-0022497-T01-IB3 P-0052961-T02-IH3 P-0027804-T02-IH3 P-0027906-T01-IH3 P-0039638-T02-IH3 P-0059694-T02-IH3 P-0061549-T01-IH3 P-0051138-T03-IH3 P-0026412-T01-IH3 P-0035062-T01-IH3 P-0035195-T04-IH3 P-0035061-T01-IH3 P-0012072-T01-IM5 P-0013519-T03-IH3 P-0021633-T01-IH3 P-0047777-T01-IH3 P-0035981-T01-IH3 P-0008130-T01-IM5 P-0051735-T01-IH3 P-0033586-T01-IH3 P-0054083-T01-IH3 P-0025583-T02-IH3 P-0047161-T01-IH3 P-0042938-T01-IH3 P-0028561-T01-IH3 P-0025748-T01-IH3 P-0030113-T02-IH3 P-0031316-T05-IH3 P-0039341-T01-IH3 P-0047412-T02-IH3 P-0015975-T01-IM6 P-0017093-T01-IH3 P-0018502-T01-IH3 P-0021016-T01-IH3 P-0021636-T01-IH3 P-0027563-T01-IH3 P-0029483-T01-IH3 P-0029886-T02-IH3 P-0033370-T03-IH3 P-0033642-T01-IH3 P-0034960-T01-IH3 P-0039623-T01-IH3 P-0041563-T04-IH3 P-0044242-T01-IH3 P-0051187-T02-IH3 P-0056407-T02-IH3 P-0058744-T01-IH3 P-0017871-T01-IH3 P-0045607-T02-IH3 P-0025586-T01-IH3 P-0035060-T01-IH3 P-0045092-T03-IH3 P-0053176-T01-IH3 P-0024208-T01-IH3 P-0059393-T01-IH3 P-0007862-T01-IM5 \ No newline at end of file +case_list_ids: P-0010779-T01-IM5 P-0015287-T01-IM6 P-0058886-T01-IH3 P-0005512-T01-IM5 P-0006240-T01-IM5 P-0004817-T01-IM5 P-0006733-T01-IM5 P-0008129-T01-IM5 P-0008625-T03-IM5 P-0009326-T01-IM5 P-0012874-T01-IM5 P-0021956-T02-IH3 P-0048209-T03-IH3 P-0015439-T01-IM6 P-0035539-T01-IH3 P-0055432-T03-IH3 P-0056436-T01-IH3 P-0058888-T01-IH3 P-0060456-T08-IH3 P-0004585-T01-IM5 P-0004559-T01-IM5 P-0005451-T01-IM5 P-0004711-T01-IM5 P-0006375-T01-IM5 P-0006223-T02-IM5 P-0008349-T01-IM5 P-0010347-T01-IM5 P-0010489-T01-IM5 P-0011322-T01-IM5 P-0017570-T01-IH3 P-0023394-T01-IH3 P-0026704-T03-IH3 P-0025746-T01-IH3 P-0027402-T01-IH3 P-0029207-T01-IH3 P-0029883-T01-IH3 P-0034206-T02-IH3 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@@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:d47bb6c5b2a9ef0ba98a3bb2b7611d375a1aefce2dc71ffedfa676cbb76c1b65 +oid sha256:2aa2245a95d07fed5d6f0fb397f62297995291f9bdce3b4b27b4c6a83ee45125 size 11108 diff --git a/public/mtnn_msk_2022/data_clinical_sample.txt b/public/mtnn_msk_2022/data_clinical_sample.txt index 025e99838e..c4531f22e9 100644 --- a/public/mtnn_msk_2022/data_clinical_sample.txt +++ b/public/mtnn_msk_2022/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:2530f5985deccfe8a93b0b808fae6d2c671163fb0af5e44b314d133fe2121f8a -size 24246 +oid sha256:2ae0a86400184534ddb8824727d88fe13624f7878ca09303164251db107bada3 +size 24369 diff --git a/public/mtnn_msk_2022/data_cna.txt b/public/mtnn_msk_2022/data_cna.txt index 6d04c315dd..704c70ab30 100644 --- a/public/mtnn_msk_2022/data_cna.txt +++ b/public/mtnn_msk_2022/data_cna.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:06fecfd4eb79855458f9dbc8648da89eb1e3f3d10a2ec4eb1c2913d7a84874fd -size 4976 +oid sha256:89d897c8ad61e01762fedc426de19912ae80b026e3e85c2830570b7552b84cda +size 4989 diff --git a/public/mtnn_msk_2022/data_cna_hg19.seg b/public/mtnn_msk_2022/data_cna_hg19.seg new file mode 100644 index 0000000000..ffac685c92 --- /dev/null +++ b/public/mtnn_msk_2022/data_cna_hg19.seg @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:508977eb41e67789f1c3aaad2b7e87c145453866a36b2463db803e37b42ccec9 +size 285002 diff --git a/public/mtnn_msk_2022/data_gene_panel_matrix.txt b/public/mtnn_msk_2022/data_gene_panel_matrix.txt index 3b642ff582..420035c9a4 100644 --- a/public/mtnn_msk_2022/data_gene_panel_matrix.txt +++ b/public/mtnn_msk_2022/data_gene_panel_matrix.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:5027fdc57c111d021fc64f2d62be8e0bcfe1d817d0ce5fd9864a204984831461 -size 6225 +oid sha256:dfe99275ed6b99e581d1404ea2634a424285f05f84d5e41ff7e787382949af7f +size 6257 diff --git a/public/mtnn_msk_2022/data_mutations.txt b/public/mtnn_msk_2022/data_mutations.txt index 4d9b2c4d6a..1e2c99f470 100644 --- a/public/mtnn_msk_2022/data_mutations.txt +++ b/public/mtnn_msk_2022/data_mutations.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:1aed50156b87dd68e343d09ac4ff706a4535434f2364feab43a093bae417202f +oid sha256:1368c537d795ea0aa6ff2ce650e5609414cd9a517f17f2d41ea412fe7ff17279 size 297906 diff --git a/public/mtnn_msk_2022/meta_cna_hg19_seg.txt b/public/mtnn_msk_2022/meta_cna_hg19_seg.txt new file mode 100644 index 0000000000..d628f87225 --- /dev/null +++ b/public/mtnn_msk_2022/meta_cna_hg19_seg.txt @@ -0,0 +1,6 @@ +cancer_study_identifier: mtnn_msk_2022 +genetic_alteration_type: COPY_NUMBER_ALTERATION +datatype: SEG +reference_genome_id: hg19 +description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals). +data_filename: data_cna_hg19.seg diff --git a/public/rms_msk_2023/LICENSE b/public/rms_msk_2023/LICENSE new file mode 100644 index 0000000000..d5f3c4b535 --- /dev/null +++ b/public/rms_msk_2023/LICENSE @@ -0,0 +1 @@ +The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license. diff --git a/public/rms_msk_2023/Readme.txt b/public/rms_msk_2023/Readme.txt new file mode 100644 index 0000000000..6202caf574 --- /dev/null +++ b/public/rms_msk_2023/Readme.txt @@ -0,0 +1 @@ +Gene panels for this study can be found here: https://github.com/cBioPortal/datahub/tree/master/reference_data/gene_panels \ No newline at end of file diff --git a/public/rms_msk_2023/data_clinical_patient.txt b/public/rms_msk_2023/data_clinical_patient.txt index 420fccd03a..498a0e8a8d 100644 --- a/public/rms_msk_2023/data_clinical_patient.txt +++ b/public/rms_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:08aa507f35cfe0ed0518f5eb7454bfad8a65b620ec4c98152dbc7a097bec6d74 -size 3760 +oid sha256:269e67b6455a568b0e3b1da1392ff3a3f94f657e88b896434e82c46ec4399bc6 +size 4032 diff --git a/public/rms_msk_2023/data_clinical_sample.txt b/public/rms_msk_2023/data_clinical_sample.txt index 651af1052c..c001bf05d1 100644 --- a/public/rms_msk_2023/data_clinical_sample.txt +++ b/public/rms_msk_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:4b8af5fbfda267bb7253916ff6db54b888c71ac7234bdedf9919574f4fb67254 -size 4823 +oid sha256:e7eb56c78529aa2ee91c77309b7dab4dfe9782650bdf26cd197b17bdf6c877c3 +size 5398 diff --git a/public/rms_msk_2023/data_sv.txt b/public/rms_msk_2023/data_sv.txt index 6272a17adf..f2204ebb8d 100644 --- a/public/rms_msk_2023/data_sv.txt +++ b/public/rms_msk_2023/data_sv.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:b7887194e5d8eb311804cbf4ae92ecf9454cf20db5f45fb54f5e27d1c250db3d -size 7588 +oid sha256:c9c6a9fd50866a7391587c6538f4c965bc5bdb35bc59b6448f6461dfbdf6fed3 +size 7089 diff --git a/public/rms_msk_2023/meta_study.txt b/public/rms_msk_2023/meta_study.txt index c892ab604d..adcfb6ca19 100644 --- a/public/rms_msk_2023/meta_study.txt +++ b/public/rms_msk_2023/meta_study.txt @@ -1,6 +1,6 @@ type_of_cancer: rms cancer_study_identifier: rms_msk_2023 -name: Extremity Rhabdomyosarcomas (MSK, JCO Precis Oncol 2023) -description: Targeted sequencing of 24 rhabdomyosarcoma tumors and their matched normals via MSK-IMPACT. +name: Pediatric Rhabdomyosarcomas (MSK, JCO Precis Oncol 2023) +description: Targeted sequencing of 24 cases with extremity rhabdomyosarcoma tumors and their matched normals (MSK Cohort) via MSK-IMPACT. pmid: 37315267 citation: de Wardin et al. JCO Precis Oncol 2023 \ No newline at end of file diff --git a/public/sarcoma_msk_2023/data_clinical_patient.txt b/public/sarcoma_msk_2023/data_clinical_patient.txt index df9015371a..2e4f6bf1b4 100644 --- a/public/sarcoma_msk_2023/data_clinical_patient.txt +++ b/public/sarcoma_msk_2023/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:7ac28e88176581b4966f86cca57116ffaa5fd2fbf451d3ee256b15844af5d5e3 -size 6268 +oid sha256:d879dd260f6cb2de9eea70c3f950ea83ca8e8c87db0573f9d4d22ee4796dfbc8 +size 6067 diff --git a/public/sarcoma_msk_2023/data_clinical_sample.txt b/public/sarcoma_msk_2023/data_clinical_sample.txt index ca8cae464d..15a892c2ff 100644 --- a/public/sarcoma_msk_2023/data_clinical_sample.txt +++ b/public/sarcoma_msk_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:dc423619d28c425a5a6e345f41026ae16960f788d4feaf382f79da1c1c6412a4 -size 16576 +oid sha256:d84934109e06b77b1845572490eb17c9e07720c4cfaa5d9793e8ff3a523f6ec7 +size 16736 diff --git a/public/sarcoma_msk_2023/data_sv.txt b/public/sarcoma_msk_2023/data_sv.txt index a06a024a12..7b2e920ac2 100644 --- a/public/sarcoma_msk_2023/data_sv.txt +++ b/public/sarcoma_msk_2023/data_sv.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:7bcf8e49be184c636e10b6e1120ebe4a5051b4c57a87450cee1b43e1372a79fc -size 14161 +oid sha256:59f45e4d79fe19088a3ef2066ff6e0707cefefb52879df90d83974aadfdca478 +size 13664 diff --git a/public/sarcoma_msk_2023/meta_study.txt b/public/sarcoma_msk_2023/meta_study.txt index d7d0c14d4c..02cd4d7818 100644 --- a/public/sarcoma_msk_2023/meta_study.txt +++ b/public/sarcoma_msk_2023/meta_study.txt @@ -1,4 +1,6 @@ type_of_cancer: mixed cancer_study_identifier: sarcoma_msk_2023 -name: Radiation-associated Sarcomas (MSK, 2023) +name: Sarcoma (MSK, J Pathol 2023) description: Targeted sequencing of 82 radiation-associated sarcomas and their matched normals via MSK-IMPACT. +pmid: 37350195 +citation: Josephine K et al. J Pathol 2023 \ No newline at end of file diff --git a/public/soft_tissue_msk_2023/data_clinical_sample.txt b/public/soft_tissue_msk_2023/data_clinical_sample.txt index c7d2615acf..520214ee94 100644 --- a/public/soft_tissue_msk_2023/data_clinical_sample.txt +++ b/public/soft_tissue_msk_2023/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:d09a0b8bec489c1055a330cb2d8790714b16db6513ba732d8b16fd0d8391e703 -size 9330 +oid sha256:6c02ec8e0f40a03a83e692f124298f20752987b83a5993a3e74a15ce8ced9838 +size 9210 diff --git a/public/soft_tissue_msk_2023/meta_study.txt b/public/soft_tissue_msk_2023/meta_study.txt index 6d3292b9f0..5b3ab49d30 100644 --- a/public/soft_tissue_msk_2023/meta_study.txt +++ b/public/soft_tissue_msk_2023/meta_study.txt @@ -1,6 +1,6 @@ type_of_cancer: rms cancer_study_identifier: soft_tissue_msk_2023 -name: Sequential Rhabdomyosarcomas (MSK, NPJ Precis Oncol 2023) -description: Targeted sequencing of 42 rhabdomyosarcoma tumors and their matched normals via MSK-IMPACT. +name: Rhabdomyosarcomas (MSK, NPJ Precis Oncol 2023) +description: Sequential targeted sequencing on 20 rhabdomyosarcoma tumors and their matched normals from the MSK cohort using MSK-IMPACT. pmid: 37730754 -citation: Wardin et at. NPJ Precis Oncol. 2023 \ No newline at end of file +citation: Wardin et at. NPJ Precis Oncol 2023 \ No newline at end of file diff --git a/public/ucec_ancestry_cds_msk_2023/LICENSE b/public/ucec_ancestry_cds_msk_2023/LICENSE new file mode 100644 index 0000000000..d5f3c4b535 --- /dev/null +++ b/public/ucec_ancestry_cds_msk_2023/LICENSE @@ -0,0 +1 @@ +The data are available under the ODC Open Database License (ODbL)(http://opendatacommons.org/licenses/odbl/1.0/) (summary available here: http://www.opendatacommons.org/licenses/odbl/1-0/summary/): you are free to share and modify the data so long as you attribute any public use of the database, or works produced from the database; keep the resulting data-sets open; and offer your shared or adapted version of the data-set under the same ODbL license. diff --git a/public/ucec_ancestry_cds_msk_2023/Readme.txt b/public/ucec_ancestry_cds_msk_2023/Readme.txt new file mode 100644 index 0000000000..6202caf574 --- /dev/null +++ b/public/ucec_ancestry_cds_msk_2023/Readme.txt @@ -0,0 +1 @@ +Gene panels for this study can be found here: https://github.com/cBioPortal/datahub/tree/master/reference_data/gene_panels \ No newline at end of file diff --git a/public/ucec_ancestry_cds_msk_2023/meta_mutations.txt b/public/ucec_ancestry_cds_msk_2023/meta_mutations.txt index 31f0121d8e..09c30c0fab 100755 --- a/public/ucec_ancestry_cds_msk_2023/meta_mutations.txt +++ b/public/ucec_ancestry_cds_msk_2023/meta_mutations.txt @@ -4,5 +4,5 @@ datatype: MAF stable_id: mutations show_profile_in_analysis_tab: true profile_name: Mutations -profile_description: Mutation data for 1866 Endometrial carcinoma samples and their matched normals from MSK-IMPACT +profile_description: Mutation data for 1882 Endometrial carcinoma samples and their matched normals from MSK-IMPACT data_filename: data_mutations.txt diff --git a/public/ucec_ancestry_cds_msk_2023/meta_study.txt b/public/ucec_ancestry_cds_msk_2023/meta_study.txt index 795582ce1b..25af3ca95b 100644 --- a/public/ucec_ancestry_cds_msk_2023/meta_study.txt +++ b/public/ucec_ancestry_cds_msk_2023/meta_study.txt @@ -1,7 +1,7 @@ type_of_cancer: ucec cancer_study_identifier: ucec_ancestry_cds_msk_2023 -name: Endometrial Carcinoma Ancestry (MSK, Cancer Discovery 2023) -description: Targeted sequencing of 1882 Endometrial Cancer tumor and normal pairs via MSK-IMPACT. +name: Endometrial Cancer (MSK, Cancer Discovery 2023) +description: Targeted sequencing of 1882 endometrial cancers and their matched normals via MSK-IMPACT. reference_genome: hg19 pmid: 37651310 -citation: Weigelt et al. Can Discovery 2023 \ No newline at end of file +citation: Weigelt et al. Cancer Discovery 2023 \ No newline at end of file