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This is a pymol extension to color structures from the AlphaFold Protein Structure Database by pLDDT.

  1. Load extension into pymol. In the pymol command prompt:
run https://raw.githubusercontent.com/cbalbin-bio/pymol-color-alphafold/master/coloraf.py

Step 1 Screenshot

  1. Invoke the extension in the pymol command prompt as so:
coloraf model_name

Step 2 Screenshot