index.md

Spribille Lab Workflows: Quality control of short reads for genomes and metagenomes

Pre-QC read quality

MetaWRAP QC module

# set up variables


# run QC module
conda activate metawrap-env
mkdir READ_QC
metawrap read_qc -1 RAW_READS/Sporothrix_1.fastq -2 RAW_READS/Sporothrix_2.fastq -t 24 -o READ_QC/Sporothrix

Post-QC read quality

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