fix multiallelic sample-filtering bug #456
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Checks if the pgenlib R package can be installed by a user, | |
| # when installing pgenlibr using: | |
| # | |
| # ``` | |
| # remotes::install_github("chrchang/plink-ng/2.0/pgenlibr") | |
| # ``` | |
| # | |
| on: | |
| push: | |
| paths: | |
| - 2.0/pgenlibr/** | |
| - .github/workflows/can_install_pgenlib_package.yaml | |
| pull_request: | |
| name: can_install_pgenlib_package | |
| jobs: | |
| can_install_pgenlib_package: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| # Install R | |
| - uses: r-lib/actions/setup-r@v2 | |
| # Prequisite for using the 'remotes' R package | |
| - name: Install libcurl4-openssl-dev | |
| run: sudo apt install -qq libcurl4-openssl-dev | |
| - name: Install pgenlibr | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_github("chrchang/plink-ng/2.0/pgenlibr") | |
| shell: Rscript {0} |