a5.15

chrchang · Oct 7, 2024 · 8c16f53 · 8c16f53
1 parent 314df97
commit 8c16f53
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Showing 3 changed files with 8 additions and 2 deletions.
diff --git a/2.0/include/pgenlib_read.cc b/2.0/include/pgenlib_read.cc
@@ -6903,6 +6903,10 @@ PglErr ParseDosage16(const unsigned char* fread_ptr, const unsigned char* fread_
     if (unlikely(ParseAndSaveDeltalistAsBitarr(fread_end, raw_sample_ct, &fread_ptr, raw_dosage_present, &raw_dosage_ct))) {
       return kPglRetMalformedInput;
     }
+    if ((!raw_dosage_ct) && (!dosage_ct_ptr)) {
+      // bugfix (7 Oct 2024)
+      ZeroWArr(raw_sample_ctl, raw_dosage_present);
+    }
   } else if (is_unconditional_dosage) {
     // case 2: unconditional dosage.  handle separately from other two cases
     // since missing values may be present.

diff --git a/2.0/plink2.cc b/2.0/plink2.cc
@@ -72,10 +72,10 @@ static const char ver_str[] = "PLINK v2.0.0-a.5.15"
 #elif defined(USE_AOCL)
   " AMD"
 #endif
-  " (xx yyy 2024)";
+  " (7 Oct 2024)";
 static const char ver_str2[] =
   // include leading space if day < 10, so character length stays the same
-  ""
+  " "
 
 #ifdef NOLAPACK
 #elif defined(LAPACK_ILP64)

diff --git a/2.0/plink2_export.cc b/2.0/plink2_export.cc
@@ -2704,6 +2704,8 @@ THREAD_FUNC_DECL ExportBgen13Thread(void* raw_arg) {
             }
           }
         }
+        // bugfix (7 Oct 2024)
+        CopyToUnalignedW(bgen_geno_buf_iter, &cur_write_bits);
         bgen_geno_buf_iter = &(bgen_geno_buf_iter[DivUp(cur_write_bit_idx, CHAR_BIT)]);
       }
       const uint32_t uncompressed_bytect = bgen_geno_buf_iter - uncompressed_bgen_geno_buf;