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--check-sex is depleted in Plink2.0? #130

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SiyangLiu opened this issue Nov 11, 2019 · 1 comment
Open

--check-sex is depleted in Plink2.0? #130

SiyangLiu opened this issue Nov 11, 2019 · 1 comment

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@SiyangLiu
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Hi Chang,
It seems that PLINK 2.0 depleted the function for checking sex using inbreeding coefficient. Is there any way in PLINK 2.0 to impute sex from the genotypes?
PLINK v2.00a2LM 64-bit Intel (10 Nov 2019) www.cog-genomics.org/plink/2.0/
(C) 2005-2019 Shaun Purcell, Christopher Chang GNU General Public License v3

Best,
Siyang
@chrchang
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For now, export a .bed and use plink 1.9 for this.

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@chrchang @SiyangLiu