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DESCRIPTION
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Package: irGSEA
Type: Package
Title: The integration of single cell rank-based gene set enrichment analysis
Version: 3.3.2
Author: Chuiqin Fan
Author@R: person("Chuiqin", "Fan", role = c('aut', 'cre'), email = '[email protected]')
Maintainer: Chuiqin Fan <[email protected]>
Description: The integration of single cell rank-based gene set enrichment analysis.
Meanwhile, you are easy to visualize the results.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Imports:
AUCell,
ComplexHeatmap,
decoupleR,
dplyr,
gghalves,
ggplotify,
ggridges,
ggsci,
ggtree,
GSVA,
magrittr,
msigdbr,
Nebulosa,
rlang (>= 0.4.11),
RobustRankAggreg,
Seurat,
singscore,
stringr,
plyr,
UCell
URL: https://github.com/chuiqin/irGSEA
BugReports: https://github.com/chuiqin/irGSEA/issues
Suggests:
aplot,
BiocManager,
BiocParallel,
circlize,
cowplot,
devtools,
data.table,
doParallel,
doRNG,
fgsea,
gficf,
ggplot2,
grDevices,
ggfun,
GSEABase,
irlba,
Matrix,
methods,
pagoda2,
pointr,
purrr,
RcppML,
readr,
reshape2,
reticulate,
roxygen2,
RMTstat,
scde,
SeuratDisk,
SeuratObject,
SummarizedExperiment,
tidytree,
tidyr,
tibble,
tidyselect,
VAM,
VISION,
viper,
sargent,
sparseMatrixStats