From c6e094acb9e720e60ad68c17573eadc4f35448e1 Mon Sep 17 00:00:00 2001
From: Thomas Cokelaer <cokelaer@gmail.com>
Date: Sun, 26 Jan 2025 22:47:51 +0100
Subject: [PATCH] update CI workflows

---
 .github/workflows/arrayexpress.yml   | 2 +-
 .github/workflows/bigg.yml           | 2 +-
 .github/workflows/biodbnet.yml       | 2 +-
 .github/workflows/biogrid.yml        | 2 +-
 .github/workflows/biomart.yml        | 2 +-
 .github/workflows/biomodels.yml      | 2 +-
 .github/workflows/chebi.yml          | 2 +-
 .github/workflows/chembl.yml         | 2 +-
 .github/workflows/cog.yml            | 2 +-
 .github/workflows/dbfetch.yml        | 2 +-
 .github/workflows/ena.yml            | 2 +-
 .github/workflows/ensembl.yml        | 2 +-
 .github/workflows/eutils.yml         | 2 +-
 .github/workflows/eva.yml            | 2 +-
 .github/workflows/hgnc.yml           | 2 +-
 .github/workflows/intact_complex.yml | 2 +-
 .github/workflows/kegg.yml           | 2 +-
 .github/workflows/muscle.yml         | 2 +-
 .github/workflows/mygeneinfo.yml     | 2 +-
 .github/workflows/ncbiblast.yml      | 2 +-
 .github/workflows/omicsdi.yml        | 2 +-
 .github/workflows/omnipath.yml       | 2 +-
 .github/workflows/panther.yml        | 2 +-
 .github/workflows/pathwaycommons.yml | 2 +-
 .github/workflows/pdb.yml            | 2 +-
 .github/workflows/pdbe.yml           | 2 +-
 .github/workflows/pfam.yml           | 2 +-
 .github/workflows/pride.yml          | 2 +-
 .github/workflows/psicquic.yml       | 2 +-
 .github/workflows/pubchem.yml        | 2 +-
 .github/workflows/quickgo.yml        | 2 +-
 .github/workflows/reactome.yml       | 2 +-
 .github/workflows/rhea.yml           | 2 +-
 .github/workflows/seqret.yml         | 2 +-
 .github/workflows/template.txt       | 2 +-
 .github/workflows/unichem.yml        | 2 +-
 .github/workflows/uniprot.yml        | 2 +-
 .github/workflows/wikipathway.yml    | 2 +-
 38 files changed, 38 insertions(+), 38 deletions(-)

diff --git a/.github/workflows/arrayexpress.yml b/.github/workflows/arrayexpress.yml
index 111f6cd..67da070 100644
--- a/.github/workflows/arrayexpress.yml
+++ b/.github/workflows/arrayexpress.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/bigg.yml b/.github/workflows/bigg.yml
index 7219b03..e0e768e 100644
--- a/.github/workflows/bigg.yml
+++ b/.github/workflows/bigg.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/biodbnet.yml b/.github/workflows/biodbnet.yml
index e25690c..01ea42f 100644
--- a/.github/workflows/biodbnet.yml
+++ b/.github/workflows/biodbnet.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/biogrid.yml b/.github/workflows/biogrid.yml
index 2326a49..26305fb 100644
--- a/.github/workflows/biogrid.yml
+++ b/.github/workflows/biogrid.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/biomart.yml b/.github/workflows/biomart.yml
index fd2708a..e3b69d1 100644
--- a/.github/workflows/biomart.yml
+++ b/.github/workflows/biomart.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/biomodels.yml b/.github/workflows/biomodels.yml
index 44e3d95..13b5f26 100644
--- a/.github/workflows/biomodels.yml
+++ b/.github/workflows/biomodels.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/chebi.yml b/.github/workflows/chebi.yml
index 89bb4f1..6952ccc 100644
--- a/.github/workflows/chebi.yml
+++ b/.github/workflows/chebi.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/chembl.yml b/.github/workflows/chembl.yml
index eaf9ad6..841deea 100644
--- a/.github/workflows/chembl.yml
+++ b/.github/workflows/chembl.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/cog.yml b/.github/workflows/cog.yml
index 0d4026e..ed48372 100644
--- a/.github/workflows/cog.yml
+++ b/.github/workflows/cog.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/dbfetch.yml b/.github/workflows/dbfetch.yml
index 5f53d7d..695ba4c 100644
--- a/.github/workflows/dbfetch.yml
+++ b/.github/workflows/dbfetch.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/ena.yml b/.github/workflows/ena.yml
index 44185f0..d1417fd 100644
--- a/.github/workflows/ena.yml
+++ b/.github/workflows/ena.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/ensembl.yml b/.github/workflows/ensembl.yml
index c25f995..cb45ba2 100644
--- a/.github/workflows/ensembl.yml
+++ b/.github/workflows/ensembl.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/eutils.yml b/.github/workflows/eutils.yml
index 42df564..d6df1a4 100644
--- a/.github/workflows/eutils.yml
+++ b/.github/workflows/eutils.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/eva.yml b/.github/workflows/eva.yml
index 5902cb0..e9de612 100644
--- a/.github/workflows/eva.yml
+++ b/.github/workflows/eva.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/hgnc.yml b/.github/workflows/hgnc.yml
index 6bac2c1..bf95bef 100644
--- a/.github/workflows/hgnc.yml
+++ b/.github/workflows/hgnc.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/intact_complex.yml b/.github/workflows/intact_complex.yml
index 855cebf..2f7ce52 100644
--- a/.github/workflows/intact_complex.yml
+++ b/.github/workflows/intact_complex.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/kegg.yml b/.github/workflows/kegg.yml
index 1ffabf9..196a2f1 100644
--- a/.github/workflows/kegg.yml
+++ b/.github/workflows/kegg.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/muscle.yml b/.github/workflows/muscle.yml
index beacbc5..c9118d4 100644
--- a/.github/workflows/muscle.yml
+++ b/.github/workflows/muscle.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/mygeneinfo.yml b/.github/workflows/mygeneinfo.yml
index 2659e5a..fe7e377 100644
--- a/.github/workflows/mygeneinfo.yml
+++ b/.github/workflows/mygeneinfo.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/ncbiblast.yml b/.github/workflows/ncbiblast.yml
index 1401294..96f0a10 100644
--- a/.github/workflows/ncbiblast.yml
+++ b/.github/workflows/ncbiblast.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/omicsdi.yml b/.github/workflows/omicsdi.yml
index c3ce645..dcc9189 100644
--- a/.github/workflows/omicsdi.yml
+++ b/.github/workflows/omicsdi.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/omnipath.yml b/.github/workflows/omnipath.yml
index 6a15f33..3a4bb88 100644
--- a/.github/workflows/omnipath.yml
+++ b/.github/workflows/omnipath.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/panther.yml b/.github/workflows/panther.yml
index 035f6c6..0d735de 100644
--- a/.github/workflows/panther.yml
+++ b/.github/workflows/panther.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pathwaycommons.yml b/.github/workflows/pathwaycommons.yml
index 6310477..12258f1 100644
--- a/.github/workflows/pathwaycommons.yml
+++ b/.github/workflows/pathwaycommons.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pdb.yml b/.github/workflows/pdb.yml
index 7aac6aa..1013130 100644
--- a/.github/workflows/pdb.yml
+++ b/.github/workflows/pdb.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pdbe.yml b/.github/workflows/pdbe.yml
index ce753dd..f2876b3 100644
--- a/.github/workflows/pdbe.yml
+++ b/.github/workflows/pdbe.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pfam.yml b/.github/workflows/pfam.yml
index c07e10e..6e2c4d6 100644
--- a/.github/workflows/pfam.yml
+++ b/.github/workflows/pfam.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pride.yml b/.github/workflows/pride.yml
index 82b309f..5cf5ca9 100644
--- a/.github/workflows/pride.yml
+++ b/.github/workflows/pride.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/psicquic.yml b/.github/workflows/psicquic.yml
index 2d54d68..a543148 100644
--- a/.github/workflows/psicquic.yml
+++ b/.github/workflows/psicquic.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/pubchem.yml b/.github/workflows/pubchem.yml
index 5102005..acba5c4 100644
--- a/.github/workflows/pubchem.yml
+++ b/.github/workflows/pubchem.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/quickgo.yml b/.github/workflows/quickgo.yml
index aa2a30a..256e405 100644
--- a/.github/workflows/quickgo.yml
+++ b/.github/workflows/quickgo.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/reactome.yml b/.github/workflows/reactome.yml
index 173691f..e5d2e65 100644
--- a/.github/workflows/reactome.yml
+++ b/.github/workflows/reactome.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/rhea.yml b/.github/workflows/rhea.yml
index dea069e..e2be996 100644
--- a/.github/workflows/rhea.yml
+++ b/.github/workflows/rhea.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/seqret.yml b/.github/workflows/seqret.yml
index 188d068..150d8b8 100644
--- a/.github/workflows/seqret.yml
+++ b/.github/workflows/seqret.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/template.txt b/.github/workflows/template.txt
index 5f802f6..9e5feb0 100644
--- a/.github/workflows/template.txt
+++ b/.github/workflows/template.txt
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/unichem.yml b/.github/workflows/unichem.yml
index b9255cb..95fddc3 100644
--- a/.github/workflows/unichem.yml
+++ b/.github/workflows/unichem.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/uniprot.yml b/.github/workflows/uniprot.yml
index b72a039..7f977d5 100644
--- a/.github/workflows/uniprot.yml
+++ b/.github/workflows/uniprot.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps:
diff --git a/.github/workflows/wikipathway.yml b/.github/workflows/wikipathway.yml
index 99f3bd3..542dbcf 100644
--- a/.github/workflows/wikipathway.yml
+++ b/.github/workflows/wikipathway.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.8, 3.9,'3.10', '3.11', '3.12']
+        python: [3.9,'3.10', '3.11', '3.12']
       fail-fast: false
 
     steps: