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[ENH] QA for GLM should show the included voxel #568

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Remi-Gau opened this issue May 13, 2022 · 1 comment · May be fixed by #1316
Open
1 task done

[ENH] QA for GLM should show the included voxel #568

Remi-Gau opened this issue May 13, 2022 · 1 comment · May be fixed by #1316
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enhancement New feature or request quality_analysis ✔️ report stats

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@Remi-Gau
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Remi-Gau commented May 13, 2022 •
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Is there an existing issue for this?

  • I have searched the existing issues

New feature

GLM should print a figure of the brain anatomical masked by the GLM mask to show what voxels are included.

When running GLM with unsmoothed data it is easy to drop voxels that users may wanna keep

Unclear documentation

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@Remi-Gau Remi-Gau mentioned this issue May 17, 2022
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@Remi-Gau Remi-Gau added the enhancement New feature or request label Jun 29, 2022
@Remi-Gau
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code example to draw mask on image

base_dir = '/home/remi/github/bidspm/demos/openneuro/outputs/derivatives/'

pth = 'bidspm-preproc/sub-292/ses-postop/func'
file = 'sub-292_ses-postop_task-es_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii,1'
spm_check_registration(fullfile(base_dir,pth,file))

stats = 'bidspm-stats/sub-292/task-es_space-MNI152NLin2009cAsym_FWHM-6'
mask = 'mask.nii'
spm_orthviews('addcolouredimage',1,fullfile(base_dir,stats,mask),[1 0 0])

spm_orthviews('redraw', 1)

@Remi-Gau Remi-Gau linked a pull request Sep 19, 2024 that will close this issue
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plot figure mask glm Remi-Gau/bidspm
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@Remi-Gau