Documentation {#mainpage}

• [Installation](@ref installpage)
• [Manual](@ref manualpage)
• [Cookbook](@ref cookbookpage)

Publication

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Nathan D Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L Matteson, Jaqueline Goes De Jesus, Bradley J Main, Amanda L Tan, Lauren M Paul, Doug E Brackney, Saran Grewal, Nikos Gurfield, Koen KA Van Rompay, Sharon Isern, Scott F Michael, Lark L Coffey, Nicholas J Loman, Kristian G Andersen

bioRxiv 383513; doi: https://doi.org/10.1101/383513