From e74207317cd04258a4f03fb685d99fcb170e011f Mon Sep 17 00:00:00 2001
From: James Munroe <jmunroe@2i2c.org>
Date: Thu, 30 May 2024 21:14:48 -0400
Subject: [PATCH] add fastqc, spades, and trimmomatics from bioconda

---
 image/environment.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/image/environment.yml b/image/environment.yml
index 1d69d67..d886101 100644
--- a/image/environment.yml
+++ b/image/environment.yml
@@ -1,4 +1,5 @@
 channels:
+  - bioconda
   - conda-forge
 dependencies:
   - gh-scoped-creds
@@ -11,3 +12,7 @@ dependencies:
   - jupyterhub-singleuser
   - numpy
   - matplotlib
+  - pandas
+  - fastqc
+  - spades
+  - trimmomatic