Generates a series of phylogenies and sequences; simulates mixtures between members of this phylogeny.
First, a server must be running:
python findNeighbour3-server.py ../demos/simulation/config/config.json
Data is simulated
python make_simulation.py 50 10000 0.02 0.01 0.05 0.1 20 1 ../output/simulation_set_1
and the simulated data is fed to the findNeighbour3 server. Responses are recorded.
python run_simulation.py ../output/simulation_set_1
Outputs are written to disc as excel files in ../output/simulation_set_1 in the above example.