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Makefile_LINUX
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######################################################################
# Makefile - command file for make to create CBFlib #
# #
# Version 0.9.8 22 Mar 2025 #
# #
# Paul Ellis and #
# Herbert J. Bernstein ([email protected]) #
# #
# (C) Copyright 2006 - 2024 Herbert J. Bernstein #
# #
######################################################################
######################################################################
# #
# YOU MAY REDISTRIBUTE THE CBFLIB PACKAGE UNDER THE TERMS OF THE GPL #
# #
# ALTERNATIVELY YOU MAY REDISTRIBUTE THE CBFLIB API UNDER THE TERMS #
# OF THE LGPL #
# #
######################################################################
########################### GPL NOTICES ##############################
# #
# This program is free software; you can redistribute it and/or #
# modify it under the terms of the GNU General Public License as #
# published by the Free Software Foundation; either version 2 of #
# (the License, or (at your option) any later version. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with this program; if not, write to the Free Software #
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA #
# 02111-1307 USA #
# #
######################################################################
######################### LGPL NOTICES ###############################
# #
# This library is free software; you can redistribute it and/or #
# modify it under the terms of the GNU Lesser General Public #
# License as published by the Free Software Foundation; either #
# version 2.1 of the License, or (at your option) any later version. #
# #
# This library is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU #
# Lesser General Public License for more details. #
# #
# You should have received a copy of the GNU Lesser General Public #
# License along with this library; if not, write to the Free #
# Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, #
# MA 02110-1301 USA #
# #
######################################################################
######################################################################
# #
# Stanford University Notices #
# for the CBFlib software package that incorporates SLAC software #
# on which copyright is disclaimed #
# #
# This software #
# ------------- #
# The term "this software", as used in these Notices, refers to #
# those portions of the software package CBFlib that were created by #
# employees of the Stanford Linear Accelerator Center, Stanford #
# University. #
# #
# Stanford disclaimer of copyright #
# -------------------------------- #
# Stanford University, owner of the copyright, hereby disclaims its #
# copyright and all other rights in this software. Hence, anyone #
# may freely use it for any purpose without restriction. #
# #
# Acknowledgement of sponsorship #
# ------------------------------ #
# This software was produced by the Stanford Linear Accelerator #
# Center, Stanford University, under Contract DE-AC03-76SFO0515 with #
# the Department of Energy. #
# #
# Government disclaimer of liability #
# ---------------------------------- #
# Neither the United States nor the United States Department of #
# Energy, nor any of their employees, makes any warranty, express or #
# implied, or assumes any legal liability or responsibility for the #
# accuracy, completeness, or usefulness of any data, apparatus, #
# product, or process disclosed, or represents that its use would #
# not infringe privately owned rights. #
# #
# Stanford disclaimer of liability #
# -------------------------------- #
# Stanford University makes no representations or warranties, #
# express or implied, nor assumes any liability for the use of this #
# software. #
# #
# Maintenance of notices #
# ---------------------- #
# In the interest of clarity regarding the origin and status of this #
# software, this and all the preceding Stanford University notices #
# are to remain affixed to any copy or derivative of this software #
# made or distributed by the recipient and are to be affixed to any #
# copy of software made or distributed by the recipient that #
# contains a copy or derivative of this software. #
# #
# Based on SLAC Software Notices, Set 4 #
# OTT.002a, 2004 FEB 03 #
######################################################################
######################################################################
# NOTICE #
# Creative endeavors depend on the lively exchange of ideas. There #
# are laws and customs which establish rights and responsibilities #
# for authors and the users of what authors create. This notice #
# is not intended to prevent you from using the software and #
# documents in this package, but to ensure that there are no #
# misunderstandings about terms and conditions of such use. #
# #
# Please read the following notice carefully. If you do not #
# understand any portion of this notice, please seek appropriate #
# professional legal advice before making use of the software and #
# documents included in this software package. In addition to #
# whatever other steps you may be obliged to take to respect the #
# intellectual property rights of the various parties involved, if #
# you do make use of the software and documents in this package, #
# please give credit where credit is due by citing this package, #
# its authors and the URL or other source from which you obtained #
# it, or equivalent primary references in the literature with the #
# same authors. #
# #
# Some of the software and documents included within this software #
# package are the intellectual property of various parties, and #
# placement in this package does not in any way imply that any #
# such rights have in any way been waived or diminished. #
# #
# With respect to any software or documents for which a copyright #
# exists, ALL RIGHTS ARE RESERVED TO THE OWNERS OF SUCH COPYRIGHT. #
# #
# Even though the authors of the various documents and software #
# found here have made a good faith effort to ensure that the #
# documents are correct and that the software performs according #
# to its documentation, and we would greatly appreciate hearing of #
# any problems you may encounter, the programs and documents any #
# files created by the programs are provided **AS IS** without any *
# warranty as to correctness, merchantability or fitness for any #
# particular or general use. #
# #
# THE RESPONSIBILITY FOR ANY ADVERSE CONSEQUENCES FROM THE USE OF #
# PROGRAMS OR DOCUMENTS OR ANY FILE OR FILES CREATED BY USE OF THE #
# PROGRAMS OR DOCUMENTS LIES SOLELY WITH THE USERS OF THE PROGRAMS #
# OR DOCUMENTS OR FILE OR FILES AND NOT WITH AUTHORS OF THE #
# PROGRAMS OR DOCUMENTS. #
######################################################################
######################################################################
# #
# The IUCr Policy #
# for the Protection and the Promotion of the STAR File and #
# CIF Standards for Exchanging and Archiving Electronic Data #
# #
# Overview #
# #
# The Crystallographic Information File (CIF)[1] is a standard for #
# information interchange promulgated by the International Union of #
# Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the #
# recommended method for submitting publications to Acta #
# Crystallographica Section C and reports of crystal structure #
# determinations to other sections of Acta Crystallographica #
# and many other journals. The syntax of a CIF is a subset of the #
# more general STAR File[2] format. The CIF and STAR File approaches #
# are used increasingly in the structural sciences for data exchange #
# and archiving, and are having a significant influence on these #
# activities in other fields. #
# #
# Statement of intent #
# #
# The IUCr's interest in the STAR File is as a general data #
# interchange standard for science, and its interest in the CIF, #
# a conformant derivative of the STAR File, is as a concise data #
# exchange and archival standard for crystallography and structural #
# science. #
# #
# Protection of the standards #
# #
# To protect the STAR File and the CIF as standards for #
# interchanging and archiving electronic data, the IUCr, on behalf #
# of the scientific community, #
# #
# # holds the copyrights on the standards themselves, *
# #
# # owns the associated trademarks and service marks, and *
# #
# # holds a patent on the STAR File. *
# #
# These intellectual property rights relate solely to the #
# interchange formats, not to the data contained therein, nor to #
# the software used in the generation, access or manipulation of #
# the data. #
# #
# Promotion of the standards #
# #
# The sole requirement that the IUCr, in its protective role, #
# imposes on software purporting to process STAR File or CIF data #
# is that the following conditions be met prior to sale or #
# distribution. #
# #
# # Software claiming to read files written to either the STAR *
# File or the CIF standard must be able to extract the pertinent #
# data from a file conformant to the STAR File syntax, or the CIF #
# syntax, respectively. #
# #
# # Software claiming to write files in either the STAR File, or *
# the CIF, standard must produce files that are conformant to the #
# STAR File syntax, or the CIF syntax, respectively. #
# #
# # Software claiming to read definitions from a specific data *
# dictionary approved by the IUCr must be able to extract any #
# pertinent definition which is conformant to the dictionary #
# definition language (DDL)[3] associated with that dictionary. #
# #
# The IUCr, through its Committee on CIF Standards, will assist #
# any developer to verify that software meets these conformance #
# conditions. #
# #
# Glossary of terms #
# #
# [1] CIF: is a data file conformant to the file syntax defined #
# at http://www.iucr.org/iucr-top/cif/spec/index.html #
# #
# [2] STAR File: is a data file conformant to the file syntax #
# defined at http://www.iucr.org/iucr-top/cif/spec/star/index.html #
# #
# [3] DDL: is a language used in a data dictionary to define data #
# items in terms of "attributes". Dictionaries currently approved #
# by the IUCr, and the DDL versions used to construct these #
# dictionaries, are listed at #
# http://www.iucr.org/iucr-top/cif/spec/ddl/index.html #
# #
# Last modified: 30 September 2000 #
# #
# IUCr Policy Copyright (C) 2000 International Union of #
# Crystallography #
######################################################################
.DELETE_ON_ERROR:
# Version string
VERSION = 0.9.8
#
# Directories
#
ROOT = $(PWD)
BIN = $(ROOT)/bin
EXAMPLES = $(ROOT)/examples
DECTRIS_EXAMPLES = $(EXAMPLES)/dectris_cbf_template_test
F90CBF = $(ROOT)/f90cbf
GRAPHICS = $(ROOT)/html_graphics
INCLUDE = $(ROOT)/include
JCBF = $(ROOT)/jcbf
JAVADIR = $(ROOT)/java
LIB = $(ROOT)/lib
M4 = $(ROOT)/m4
MINICBF_TEST = $(ROOT)/minicbf_test
SOLIB = $(ROOT)/solib
SRC = $(ROOT)/src
PY2CBF = $(ROOT)/py2cbf
PY3CBF = $(ROOT)/pycbf
TEMPLATES= $(ROOT)/templates
DOC = $(ROOT)/doc
DATADIRI = $(ROOT)/../CBFlib_$(VERSION)_Data_Files_Input
DATADIRO = $(ROOT)/../CBFlib_$(VERSION)_Data_Files_Output
CBF_PREFIX ?= $(HOME)
#
# Comment out the next line if scratch test files should be retained
#
CLEANTESTS = yes
MSYS2=no
CBFLIB_DONT_USE_LOCAL_HDF5?=no
CBFLIB_DONT_USE_LZ4?=no
CBFLIB_DONT_USE_BSHUF?=no
CBFLIB_DONT_USE_ZSTD?=no
CBFLIB_DONT_USE_LOCAL_NUWEB ?= no
ifeq ($(CBFLIB_DONT_USE_LOCAL_NUWEB),yes)
NUWEB=nuweb
NUWEB_DEP=
NUWEB_DEP2=
else
NUWEB=$(BIN)/nuweb
NUWEB_DEP=nuweb-1.62
NUWEB_DEP2=$(BIN)/nuweb
endif
CBFLIB_DONT_HAVE_FGETLN ?= yes
ifeq ($(CBFLIB_DONT_HAVE_FGETLN),yes)
SRC_FGETLN = $(SRC)/fgetln.c
else
SRC_FGETLN =
endif
CBFLIB_DONT_USE_PY2CIFRW ?= yes
ifneq ($(CBFLIB_DONT_USE_PY2CIFRW),yes)
#
# Definitions to get versions of python2 PyCifRW and PLY
#
PY2CIFRW ?= PyCifRW-4.1
PY2PLY = ply-3.2
PY2CIFRWFLAG = -DCBF_USE_PYCIFRW
PY2CIFRW_PREFIX ?= $(HOME)/.local
endif
CBFLIB_DONT_USE_PY3CIFRW ?= no
ifneq ($(CBFLIB_DONT_USE_PY3CIFRW),yes)
#
# Definitions to get versions of python3 PyCifRW and PLY
#
PY3CIFRW ?= PyCifRW-4.3_rev_19Jun21
PY3PLY = ply-3.11
PY3CIFRWFLAG = -DCBF_USE_PYCIFRW
PY3CIFRW_PREFIX ?= $(HOME)/.local
endif
#
# Definition to get a version of tifflib to support tiff2cbf
#
TIFF ?= tiff-4.0.6_rev_3Nov16
TIFF_PREFIX ?= $(PWD)
TIFF_INSTALL = $(TIFF)_INSTALL
#
#Definitions to get a version of swig
#
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG),yes)
SWIG_PREFIX := $(PWD)
SWIG_KIT := swig-4.4.0
else
SWIG_PREFIX :=
SWIG_KIT :=
endif
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG_FORTRAN),yes)
SWIG_FORTRAN_PREFIX := $(F90CBF)
SWIG_FORTRAN_KIT := swig-fortran-swig
else
SWIG_FORTRAN_PREFIX :=
SWIG_FORTRAN_KIT :=
endif
#
# Definitions to get a version of HDF5
#
ifneq ($(HDF5_PREFIX),) # already installed on system
CBFLIB_DONT_USE_LOCAL_HDF5 = yes
HDF5CFLAGS=-DH5_USE_110_API
endif
ifneq ("$(CBFLIB_DONT_USE_LOCAL_HDF5)","yes")
HDF5_PREFIX ?= $(PWD)
HDF5 ?= hdf5-1.14.4-2
ifeq ("$(HDF5)","hdf5-1.14.4-2")
HDF5CFLAGS=-DH5_USE_110_API
endif
HDF5dep = $(HDF5)
HDF5_INSTALL = $(HDF5)_INSTALL
ifneq ("$(MSYS2)","yes")
HDF5LIBS_LOCAL = $(LIB)/libhdf5.a
HDF5LIBS_SYSTEM = -lz -ldl -lsz -laec -llzma -ljpeg
HDF5SOLIBS_LOCAL = -L$(LIB) -lhdf5
HDF5SOLIBS_SYSTEM = -lz -lsz -laec -llzma -ljpeg
else
HDF5LIBS_LOCAL = -L$(LIB) -lhdf5 -lhdf5.dll
HDF5LIBS_SYSTEM = -lz -ldl -lsz -laec -llzma -ljpeg
HDF5SOLIBS_LOCAL = -L$(LIB) -lhdf5 -lhdf5.dll
HDF5SOLIBS_SYSTEM = -lz -lsz -laec -llzma -ljpeg
endif
else
HDF5 =
HDF5dep =
HDF5_INSTALL =
HDF5LIBS_LOCAL =
ifneq ($(HDF5_PREFIX),)
HDF5lib = -L$(HDF5_PREFIX)/lib
endif
ifneq ($(MSYS2),yes)
HDF5LIBS_SYSTEM = $(HDF5lib) -lhdf5 -lz -ldl -lsz -laec -llzma -ljpeg
HDF5SOLIBS_LOCAL =
HDF5SOLIBS_SYSTEM = $(HDF5lib) -lhdf5 -lz -lsz -laec -llzma -ljpeg
else
HDF5LIBS_SYSTEM = $(HDF5lib) -lhdf5 -lhdf5.dll -lz -ldl -lsz -laec -llzma -ljpeg
HDF5SOLIBS_LOCAL =
HDF5SOLIBS_SYSTEM = $(HDF5lib) -lhdf5 -lhdf5.dll -lz -lsz -laec -llzma -ljpeg
endif
endif
HDF5REGISTER ?= --register manual
ifneq ($(HDF5_PREFIX),)
HDF5include = -I$(HDF5_PREFIX)/include
endif
ifneq ($(MSYS2),yes)
H5DUMP = $(HDF5_PREFIX)/bin/h5dump
else
H5DUMP = /MINGW32/bin/h5dump
endif
CBFLIB_DONT_USE_LIBAEC ?= no
ifneq ($(CBFLIB_DONT_USE_LIBAEC),yes)
#
# Definitions to get a version of LIBAEC, dropin replacmement for szip
#
LIBAEC ?= libaec-1.1.3
LIBAECdep = $(LIBAEC)
LIBAECsrc = $(LIBAEC)/src
LIBAECinclude = $(LIBAEC)/include
LIBAECSOLIBS = -L$(SOLIB) -lsz -laec
else
LIBAECSOLIBS =
LIBAECdep =
endif
CBFLIB_DONT_USE_LZ4 ?= no
ifneq ($(CBFLIB_DONT_USE_LZ4),yes)
#
# Definitions to get a version of HDF5Plugin for LZ4
#
ifneq ($(MSYS2),yes)
LZ4 ?= HDF5Plugin_5Jun21
else
LZ4 ?= HDF5-External-Filter-Plugins
endif
LZ4dep = $(LZ4)
LZ4src = $(LZ4)/src
LZ4include = $(LZ4)/include
LZ4SOLIBS = -L$(SOLIB) -lh5zlz4
else
LZ4SOLIBS =
LZ4dep =
endif
CBFLIB_DONT_USE_BSHUF ?= no
ifneq ($(CBFLIB_DONT_USE_BSHUF),yes)
#
# Definitions to get a version of HDF5Plugin for BSHUFFLE WITH LZ4
#
BSHUF ?= bitshuffle
BSUFdep = $(BSHUF)
BSHUFsrc = $(BSHUF)/src
BSHUFinclude = $(BSHUF)/src
BSHUFSOLIBS = -L$(SOLIB) -lh5zbshuf
BSHUFFILTER = libbshuf_h5filter
else
BSHUFSOLIBS =
BSHUFdep =
endif
CBFLIB_DONT_USE_ZSTD ?= no
ifneq ($(CBFLIB_DONT_USE_ZSTD),yes)
#
# Definitions to get a version of HDF5Plugin for Zstandard
# assumes libztd-dev installed
#
ZSTD ?= HDF5Plugin-Zstandard
ZSTD_URL ?= http://www.github.com/yayahjb/HDF5Plugin-Zstandard.git
ZSTDdep = $(ZSTD)
ZSTDsrc = $(ZSTD)
ZSTDinclude = $(ZSTD)
ZSTDSOLIBS = -L$(SOLIB) -lzstd_h5_plugin_shared
ZSTDFILTER = zstd_h5_plugin_shared
else
ZSTDFLTSOLIBS =
ZSTDdep =
endif
#
# Definitions to get a version of CQRLIB
#
CQRLIB ?= cqrlib
CQRLIB_URL ?= https://github.com/yayahjb/$(CQRLIB).git
CQRLIBdep = $(CQRLIB)
CQRLIBsrc = $(CQRLIB)
CQRLIBinclude = $(CQRLIB)
CQRLIBSOLIBS = -L$(SOLIB) -l cqr
#
# Definition of python to use
#
PYTHON2 ?= python2
PYTHON3 ?= python3
#
# Definitions to get a stable version of regex
#
REGEX_PREFIX ?= $(PWD)
ifneq ($(REGEX_PREFIX),$(PWD))
CBFLIB_DONT_USE_LOCAL_REGEX ?= yes
endif
REGEX_LIBDIR ?= $(REGEX_PREFIX)/lib
ifneq ($(CBFLIB_DONT_USE_LOCAL_REGEX),yes)
REGEX ?= pcre-8.38
REGEXDEP = $(REGEX)
REGEX_INSTALL = $(REGEX)_INSTALL
REGEX_LIB ?= pcreposix
REGEX_LIB2 ?= pcre
ifneq ($(MSYS2),yes)
REGEX_LIBS ?= -L $(REGEX_LIBDIR) -l$(REGEX_LIB) -l$(REGEX_LIB2)
REGEX_LIBS_STATIC = $(LIB)/libpcreposix.a $(LIB)/libpcre.a
else
REGEX_LIBS ?= -L $(REGEX_LIBDIR) -l$(REGEX_LIB) -l$(REGEX_LIB).dll -l$(REGEX_LIB2) -l$(REGEX_LIB2).dll
REGEX_LIBS_STATIC = $(REGEX_LIBS)
endif
REGEX_INCLUDES ?= -I $(REGEX_PREFIX)
else
REGEX =
REGEXDEP =
REGEX_INSTALL =
REGEX_LIB ?=
REGEX_LIB2 ?=
REGEX_LIBS ?=
REGEX_INCLUDES ?=
endif
# Program to use to retrieve a URL
DOWNLOAD ?= wget -N
#DOWNLOAD ?= curl -O -L
# Flag to control symlinks versus copying
SLFLAGS = --use_ln
LN = ln -s -f
#
# Program to use to pack shars
#
SHAR = /usr/bin/shar
#SHAR = /usr/local/bin/gshar
#
# Program to use to create archives
#
AR = /usr/bin/ar
#
# Program to use to add an index to an archive
#
RANLIB = /usr/bin/ranlib
#
# Program to use to generate a signature
#
#SIGNATURE ?= /usr/bin/openssl dgst -md5
#SIGNATURE ?= (/usr/bin/openssl dgst -md5 | sed "s/^.*= //")
SIGNATURE ?= ( cat > md5tmp; cmake -E md5sum md5tmp| sed "s/ .*//")
#
# Pipe command to extract all but the first line of a text file
#
ALLBUTONE = tail -n +2
#
# Diff 2 files, ignore version numbers
#
DIFF_IGNORE_VERSIONS = diff -a -I "CBF: VERSION" -I "written by CBFlib"
#
# Extension for signatures of files
#
SEXT = .md5
# Default shell
SHELL = bash
# call to time a command
#TIME =
#TIME = time
#
# Program to display differences between files
#
DIFF = diff -u -b -a
#
# Program to generate various wrapper for C/C++ code
#
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG),yes)
SWIG := $(BIN)/swig
else
SWIG := swig
endif
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG_FORTRAN),yes)
SWIG_FORTRAN := $(F90CBF)/bin/swig
else
SWIG_FORTRAN :=
endif
#
# Program to generate wrapper classes for Python
#
PYSWIG = $(SWIG) -python
#
# Program to generate wrapper classes for Java
#
JSWIG = $(SWIG) -java
#
# Program to generate wrapper module for f90
#
F90SWIG = $(SWIG_FORTRAN) -fortran
#
# Java SDK root directory
#
ifeq ($(JDKDIR),)
JDKDIR = /etc/alternatives/java_sdk
endif
#
# Launcher for Java
#
JAVA = $(JDKDIR)/bin/java
#
# Compiler for Java
#
JAVAC = $(JDKDIR)/bin/javac
#
# Java archiver for compiled classes
#
JAR = $(JDKDIR)/bin/jar
ifneq ($(CBF_DONT_USE_LONG_LONG),)
NOLLFLAG = -DCBF_DONT_USE_LONG_LONG
else
NOLLFLAG =
endif
ifneq ($(CBF_NO_REGEX),)
CBF_REGEXFLAG = -DCBF_NO_REGEX
else
CBF_REGEXFLAG = -DCBF_REGEXLIB_REGEX
endif
ifneq ($(CBF_USE_ULP),)
ULPFLAG = -DCBF_USE_ULP
else
ULPFLAG =
endif
ifneq ($(CBFLIB_DONT_USE_LIBAEC),yes)
LIBAECFLAG = -DCBF_H5Z_USE_LIBAEC
else
LIBAECFLAG =
endif
ifneq ($(CBFLIB_DONT_USE_LZ4),yes)
LZ4FLAG = -DCBF_H5Z_USE_LZ4
else
LZ4FLAG =
endif
ifneq ($(CBFLIB_DONT_USE_BSHUF),yes)
BSHUFFLAG = -DCBF_H5Z_USE_BSHUF
else
BSHUFFLAG =
endif
ifneq ($(CBFLIB_DONT_USE_ZSTD),yes)
ZSTDFLAG = -DCBF_H5Z_USE_ZSTD
else
ZSTDFLAG =
endif
MISCFLAG = $(NOLLFLAG) $(ULPFLAG)
ifneq ($(CBFLIB_DONT_USE_PY2CIFRW),yes)
#
# PY2CBF definitions
#
PY2CBFEXT = so
PY2CBFBOPT =
PY2CBFIOPT =
SETUP_PY = setup.py
PY2INSTALLSETUP_PY = py2setup.py
endif
ifneq ($(CBFLIB_DONT_USE_PY3CIFRW),yes)
#
# PY3CBF definitions
#
PY3CBFEXT = so
PY3CBFBOPT =
PY3CBFIOPT =
SETUP_PY = setup.py
PY3INSTALLSETUP_PY = py3setup.py
endif
#
# Set the compiler and flags
#
#########################################################
#
# Appropriate compiler definitions for Linux
#
#########################################################
CC = gcc
C++ = g++
CFLAGS = -g -O2 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing $(HDF5CFLAGS)
LDFLAGS =
F90C = gfortran
#F90FLAGS = -g -fno-range-check -fallow-invalid-boz
F90FLAGS = -g -fno-range-check
F90LDFLAGS =
SOCFLAGS = -fPIC
SOLDFLAGS = -shared -Wl,-rpath,$(CBF_PREFIX)/lib
JAVAINCLUDES = -I$(JDKDIR)/include -I$(JDKDIR)/include/linux
ifeq ($(HDF5_PREFIX),)
LDPREFIX = LD_LIBRARY_PATH=$(SOLIB):$(LIB):$$LD_LIBRARY_PATH;export LD_LIBRARY_PATH;
RUNLDPREFIX = LD_LIBRARY_PATH=$(CBF_PREFIX)/lib:$(LIB):$$LD_LIBRARY_PATH;export LD_LIBRARY_PATH;
else
LDPREFIX = LD_LIBRARY_PATH=$(SOLIB):$(HDF5_PREFIX)/lib:$(LIB):$$LD_LIBRARY_PATH;export LD_LIBRARY_PATH;
RUNLDPREFIX = LD_LIBRARY_PATH=$(CBF_PREFIX)/lib:$(HDF5_PREFIX)/lib:$(LIB):$$LD_LIBRARY_PATH;export LD_LIBRARY_PATH;
endif
EXTRALIBS = -lm
M4FLAGS = -Dfcb_bytes_in_rec=131072
TIME = time
ifneq ($(NOFORTRAN),)
F90C =
endif
#
# URLs from which to retrieve the data directories
#
DATAURLBASE = http://downloads.sf.net/cbflib/
DATAURLI = $(DATAURLBASE)/CBFlib_$(VERSION)_Data_Files_Input.tar.gz
DATAURLO = $(DATAURLBASE)/CBFlib_$(VERSION)_Data_Files_Output.tar.gz
#
# URLs from which to retrieve needed external package snapshots
#
ifneq ($(CBFLIB_DONT_USE_PY2CIFRW),yes)
PY2CIFRWURL = http://downloads.sf.net/cbflib/$(PY2CIFRW).tar.gz
PY2PLYURL = http://www.dabeaz.com/ply/$(PY2PLY).tar.gz
endif
ifneq ($(CBFLIB_DONT_USE_PY3CIFRW),yes)
PY3CIFRWURL = http://downloads.sf.net/cbflib/$(PY3CIFRW).tar.gz
PY3PLYURL = http://downloads.sf.net/cbflib/$(PY3PLY).tar.gz
endif
REGEX_URL ?= http://downloads.sf.net/cbflib/$(REGEX).tar.gz
TIFF_URL ?= http://downloads.sf.net/cbflib/$(TIFF).tar.gz
HDF5_URL ?= http://downloads.sf.net/cbflib/$(HDF5).tar.gz
ifneq ($(CBFLIB_DONT_USE_LOCAL_NUWEB),yes)
NUWEB_URL ?= http://downloads.sf.net/cbflib/$(NUWEB_DEP).tar.gz
endif
LIBAEC_URL = http://downloads.sf.net/cbflib/$(LIBAEC).tar.gz
ifneq ($(MSYS2),yes)
LZ4_URL = http://downloads.sf.net/cbflib/$(LZ4).tar.gz
else
LZ4_URL = http://www.github.com/yayahjb/$(LZ4).git
endif
BSHUF_URL = http://www.github.com/yayahjb/$(BSHUF).git
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG),yes)
SWIG_URL := https://github.com/swig/swig.git
endif
ifneq ($(CBFLIB_DONT_USE_LOCAL_SWIG_FORTRAN),yes)
SWIG_FORTRAN_URL := https://github.com/swig-fortran/swig.git
endif
#
# Include directories
#
INCLUDES = -I$(INCLUDE) -I$(SRC) $(HDF5include)
#
# runtime library path export commands
#
ifeq ($LD_LIBRARY_PATH)$(DYLD_LIBRARY_PATH)$(LD_RUN_PATH),)
ifeq ($(HDF5_PREFIX),)
RTLPEXPORTS = LD_LIBRARY_PATH=$(PWD)/solib:$(PWD)/lib;export LD_LIBRARY_PATH;\
DYLD_LIBRARY_PATH=$(PWD)/solib:$(PWD)/lib;export DYLD_LIBRARY_PATH;\
LD_RUN_PATH=$(PWD)/solib:$(PWD)/lib;export LD_RUN_PATH;
else
RTLPEXPORTS = LD_LIBRARY_PATH=$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export LD_LIBRARY_PATH;\
DYLD_LIBRARY_PATH=$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export DYLD_LIBRARY_PATH;\
LD_RUN_PATH=$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export LD_RUN_PATH;
endif
else
ifeq ($(HDF5_PREFIX),)
RTLPEXPORTS = LD_LIBRARY_PATH=$(LD_LIBRARY_PATH):$(PWD)/solib:$(PWD)/lib;export LD_LIBRARY_PATH;\
DYLD_LIBRARY_PATH=$(DYLD_LIBRARY_PATH):$(PWD)/solib:$(PWD)/lib;export DYLD_LIBRARY_PATH;\
LD_RUN_PATH=$(LD_RUN_PATH):$(PWD)/solib:$(PWD)/lib;export LD_RUN_PATH;
else
RTLPEXPORTS = LD_LIBRARY_PATH=$(LD_LIBRARY_PATH):$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export LD_LIBRARY_PATH;\
DYLD_LIBRARY_PATH=$(DYLD_LIBRARY_PATH):$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export DYLD_LIBRARY_PATH;\
LD_RUN_PATH=$(LD_RUN_PATH):$(PWD)/solib:$(PWD)/lib:$(HDF5_PREFIX)/lib;export LD_RUN_PATH;
endif
endif
######################################################################
# You should not need to make modifications below this line #
######################################################################
ifneq ($(CBF_USE_ULP),)
SRC_CBF_ULP_C = $(SRC)/cbf_ulp.c
INCLUDE_CBF_ULP_H = $(INCLUDE)/cbf_ulp.h
BIN_TESTULP = $(BIN)/testulp
else
SRC_CBF_ULP_C =
INCLUyDE_CBF_ULP_H =
BIN_TESTULP =
endif
ifneq ($(MSYS2),yes)
SRC_REALPATH =
else
SRC_REALPATH = $(SRC)/realpath.c
endif
#
# Suffixes of files to be used or built
#
.SUFFIXES: .c .o .f90 .m4
.m4.f90:
m4 -P $(M4FLAGS) $< > $@
ifneq ($(F90C),)
.f90.o:
$(F90C) $(F90FLAGS) -c $< -o $@
endif
#
# Common dependencies
#
COMMONDEP = $(M4)/Makefile.m4
#
# Source files
#
SOURCE = $(SRC)/cbf.c \
$(SRC)/cbf_airy_disk.c \
$(SRC)/cbf_alloc.c \
$(SRC)/cbf_array2minicbf.c \
$(SRC)/cbf_ascii.c \
$(SRC)/cbf_binary.c \
$(SRC)/cbf_byte_offset.c \
$(SRC)/cbf_canonical.c \
$(SRC)/cbf_codes.c \
$(SRC)/cbf_compress.c \
$(SRC)/cbf_context.c \
$(SRC)/cbf_copy.c \
$(SRC)/cbf_file.c \
$(SRC)/cbf_getopt.c \
$(SRC)/cbf_hdf5.c \
$(SRC)/cbf_hdf5_filter.c \
$(SRC)/cbf_lex.c \
$(SRC)/cbf_minicbf_header.c\
$(SRC)/cbf_nibble_offset.c \
$(SRC)/cbf_packed.c \
$(SRC)/cbf_predictor.c \
$(SRC)/cbf_read_binary.c \
$(SRC)/cbf_read_mime.c \
$(SRC)/cbf_simple.c \
$(SRC)/cbf_string.c \
$(SRC)/cbf_stx.c \
$(SRC)/cbf_tree.c \
$(SRC_CBF_ULP_C) \
$(SRC)/cbf_uncompressed.c \
$(SRC)/cbf_write.c \
$(SRC)/cbf_write_binary.c \
$(SRC)/cbf_ws.c \
$(SRC)/cbff.c \
$(SRC)/md5c.c \
$(SRC)/img.c \
$(SRC_FGETLN) $(SRC_REALPATH)
ifneq ($(CBFLIB_DONT_USE_PY2CIFRW),yes)
PY2SOURCE = $(SRC)/drel_lex.py \
$(SRC)/drel_yacc.py \
$(SRC)/drelc.py \
$(SRC)/drel_prep.py
endif
ifneq ($(CBFLIB_DONT_USE_PY3CIFRW),yes)
PY3SOURCE = $(SRC)/drel_lex.py \
$(SRC)/drel_yacc.py \
$(SRC)/drelc.py \
$(SRC)/drel_prep.py
endif
F90SOURCE = $(SRC)/fcb_atol_wcnt.f90 \
$(SRC)/fcb_ci_strncmparr.f90 \
$(SRC)/fcb_exit_binary.f90 \
$(SRC)/fcb_nblen_array.f90 \
$(SRC)/fcb_next_binary.f90 \
$(SRC)/fcb_open_cifin.f90 \
$(SRC)/fcb_packed.f90 \
$(SRC)/fcb_read_bits.f90 \
$(SRC)/fcb_read_byte.f90 \
$(SRC)/fcb_read_image.f90 \
$(SRC)/fcb_read_line.f90 \
$(SRC)/fcb_read_xds_i2.f90 \
$(SRC)/fcb_skip_whitespace.f90
#
# Header files
#
HEADERS = $(INCLUDE)/cbf.h \
$(INCLUDE)/cbf_airy_disk.h \
$(INCLUDE)/cbf_alloc.h \
$(INCLUDE)/cbf_array2minicbf.h \
$(INCLUDE)/cbf_ascii.h \
$(INCLUDE)/cbf_binary.h \
$(INCLUDE)/cbf_byte_offset.h \
$(INCLUDE)/cbf_canonical.h \
$(INCLUDE)/cbf_codes.h \
$(INCLUDE)/cbf_compress.h \
$(INCLUDE)/cbf_context.h \
$(INCLUDE)/cbf_copy.h \
$(INCLUDE)/cbf_file.h \
$(INCLUDE)/cbf_getopt.h \
$(INCLUDE)/cbf_hdf5.h \
$(INCLUDE)/cbf_hdf5_filter.h \
$(INCLUDE)/cbf_lex.h \
$(INCLUDE)/cbf_minicbf_header.h\
$(INCLUDE)/cbf_nibble_offset.h \
$(INCLUDE)/cbf_packed.h \
$(INCLUDE)/cbf_predictor.h \
$(INCLUDE)/cbf_read_binary.h \
$(INCLUDE)/cbf_read_mime.h \
$(INCLUDE)/cbf_simple.h \
$(INCLUDE)/cbf_string.h \
$(INCLUDE)/cbf_stx.h \
$(INCLUDE)/cbf_tree.h \
$(INCLUDE)/cbf_uncompressed.h \
$(INCLUDE_CBF_ULP_H) \
$(INCLUDE)/cbf_write.h \
$(INCLUDE)/cbf_write_binary.h \
$(INCLUDE)/cbf_ws.h \
$(INCLUDE)/global.h \
$(INCLUDE)/cbff.h \
$(INCLUDE)/md5.h \
$(INCLUDE)/img.h
#
# m4 macro files
#
M4FILES = $(M4)/fcblib_defines.m4 \
$(M4)/fcb_exit_binary.m4 \
$(M4)/fcb_next_binary.m4 \
$(M4)/fcb_open_cifin.m4 \
$(M4)/fcb_packed.m4 \
$(M4)/fcb_read_bits.m4 \
$(M4)/fcb_read_image.m4 \
$(M4)/fcb_read_xds_i2.m4 \
$(M4)/test_fcb_read_image.m4 \
$(M4)/test_xds_binary.m4