diff --git a/.flake8 b/.flake8
deleted file mode 100644
index 2bcd70e..0000000
--- a/.flake8
+++ /dev/null
@@ -1,2 +0,0 @@
-[flake8]
-max-line-length = 88
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index c971719..b4dc142 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -45,19 +45,12 @@ jobs:
       - name: Install Dependencies
         run: poetry install
 
-      # Step 6: Run Linting (optional, remove if using pre-commit hooks)
-      - name: Lint Code with Black
-        run: poetry run black --check .
-
-      - name: Lint Code with Flake8
-        run: poetry run flake8 .
-
-      # Step 7: Run Unit Tests with Coverage
+      # Step 6: Run Unit Tests with Coverage
       - name: Run Unit Tests with Coverage
         run: |
-          poetry run pytest --maxfail=3 --disable-warnings --cov=core --cov=methodologies --cov-report=xml --cov-report=html tests/
+          poetry run pytest --maxfail=3 --disable-warnings --cov=core --cov=methodologies --cov-report=xml --cov-report=html sequestrae_engine/tests/
 
-      # Step 8: Upload Coverage Report as an Artifact (optional)
+      # Step 7: Upload Coverage Report as an Artifact (optional)
       - name: Upload Coverage Report
         uses: actions/upload-artifact@v3
         with:
diff --git a/.gitignore b/.gitignore
index a095474..81a8d8c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,5 +1,6 @@
 .python-version
 .vscode/
+.DS_Store
 
 # Byte-compiled / optimized / DLL files
 __pycache__/
diff --git a/.isort.cfg b/.isort.cfg
deleted file mode 100644
index 66665c6..0000000
--- a/.isort.cfg
+++ /dev/null
@@ -1,12 +0,0 @@
-[settings]
-profile = black               # Ensures isort works seamlessly with Black's formatting style
-line_length = 88              # Matches Black's default line length
-multi_line_output = 3         # Aligns multi-line imports vertically
-include_trailing_comma = true # Adds trailing commas for cleaner diffs
-force_grid_wrap = 0           # Avoids wrapping imports unnecessarily
-combine_as_imports = true     # Combines `import x as y` statements where possible
-use_parentheses = true        # Uses parentheses for wrapping instead of backslashes
-ensure_newline_before_comments = true # Adds a newline before comments in imports
-known_third_party = django,numpy,pandas,requests # Examples of third-party libraries
-known_first_party = myproject # Replace `myproject` with your local project's namespace
-sections = FUTURE,STDLIB,THIRDPARTY,FIRSTPARTY,LOCALFOLDER # Order of import sections
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index a210ba5..913ae32 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,25 +1,18 @@
 repos:
   - repo: https://github.com/psf/black
-    rev: 24.10.0  # Replace with the version of Black you're using
+    rev: 24.10.0 # Replace with the version of Black you're using
     hooks:
       - id: black
-        args: ["--line-length=88"]
+        args: ["--line-length=100"]
 
   - repo: https://github.com/pycqa/isort
-    rev: 5.13.2  # Replace with the version of isort you're using
+    rev: 5.13.2 # Replace with the version of isort you're using
     hooks:
       - id: isort
         args: ["--profile=black"]
 
-  - repo: https://github.com/pycqa/flake8
-    rev: 7.1.1  # Replace with the version of Flake8 you're using
-    hooks:
-      - id: flake8
-        args: ["--max-line-length=88"]
-        additional_dependencies: []
-
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0  # Replace with the version of pre-commit you're using
+    rev: v5.0.0 # Replace with the version of pre-commit you're using
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
diff --git a/PRD.md b/PRD.md
index 48f0b61..9e25229 100644
--- a/PRD.md
+++ b/PRD.md
@@ -456,7 +456,7 @@ Establish the foundational structure and implement core utilities to support met
 - Fully functional directory structure with placeholder files.
 - Implemented and tested `utilities.py`and `constants.py`
 
-## Week 2: Input Validation Framework
+## Week 2: Input Validation Framework [DONE]
 
 ### Goal
 
diff --git a/core/input_validation.py b/core/input_validation.py
deleted file mode 100644
index 2217613..0000000
--- a/core/input_validation.py
+++ /dev/null
@@ -1 +0,0 @@
-# This file will contain functions and classes for validating input data.
diff --git a/core/utilities.py b/core/utilities.py
deleted file mode 100644
index 3396105..0000000
--- a/core/utilities.py
+++ /dev/null
@@ -1,51 +0,0 @@
-import json
-import logging
-import os
-
-# Configure logging to include the package name
-logging.basicConfig(
-    level=logging.INFO, format="%(asctime)s - %(name)s - %(levelname)s - %(message)s"
-)
-logger = logging.getLogger(__name__)
-
-
-def read_json(file_path):
-    """
-    Reads a JSON file and returns the data as a dictionary.
-
-    :param file_path: Path to the JSON file.
-    :return: Dictionary containing data read from the JSON file.
-    :raises: FileNotFoundError, json.JSONDecodeError
-    """
-    if not os.path.exists(file_path):
-        logger.error(f"File not found: {file_path}")
-        raise FileNotFoundError(f"File not found: {file_path}")
-
-    with open(file_path, "r") as file:
-        try:
-            json_dict = json.load(file)
-            logger.info(f"Successfully read JSON file: {file_path}")
-            return json_dict
-        except json.JSONDecodeError as e:
-            logger.error(f"Error decoding JSON from file {file_path}: {e}")
-            raise e
-
-
-def write_json(file_path, json_dict):
-    """
-    Writes a dictionary to a JSON file.
-
-    :param file_path: Path to the JSON file.
-    :param json_dict: Dictionary to write to the JSON file.
-    :raises: TypeError, IOError
-    """
-    with open(file_path, "w") as file:
-        try:
-            json.dump(json_dict, file, indent=4)
-            logger.info(f"Successfully wrote JSON to file: {file_path}")
-        except TypeError as e:
-            logger.error(f"Error encoding data to JSON for file {file_path}: {e}")
-            raise e
-        except IOError as e:
-            logger.error(f"Error writing to file {file_path}: {e}")
-            raise e
diff --git a/data/input_schema.json b/data/input_schema.json
deleted file mode 100644
index 0bc20e4..0000000
--- a/data/input_schema.json
+++ /dev/null
@@ -1,33 +0,0 @@
-{
-  "project_metadata": {
-    "project_name": "string",
-    "location": "string",
-    "start_date": "date",
-    "end_date": "date",
-    "framework_version": "string"
-  },
-  "feedstock": {
-    "type": "string",
-    "moisture_content": "number",
-    "energy_content": "number"
-  },
-  "production": {
-    "technology_type": "string",
-    "temperature": "number",
-    "yield_efficiency": "number"
-  },
-  "biochar_properties": {
-    "h_c_ratio": "number",
-    "ash_content": "number"
-  },
-  "application": {
-    "application_rate": "number",
-    "application_area": "number",
-    "use_case": "string"
-  },
-  "lifecycle_data": {
-    "baseline_emissions": "number",
-    "project_emissions": "number",
-    "leakage_risks": "number"
-  }
-}
diff --git a/methodologies/abstract_methodology.py b/methodologies/abstract_methodology.py
deleted file mode 100644
index 0d067ab..0000000
--- a/methodologies/abstract_methodology.py
+++ /dev/null
@@ -1,21 +0,0 @@
-# This file will contain the abstract base class for different methodologies.
-
-from abc import ABC, abstractmethod
-
-
-class BaseMethodology(ABC):
-    @abstractmethod
-    def validate_inputs(self, inputs):
-        pass
-
-    @abstractmethod
-    def calculate_removals(self, inputs):
-        pass
-
-    @abstractmethod
-    def get_metadata(self):
-        pass
-
-    @abstractmethod
-    def format_output(self, results):
-        pass
diff --git a/methodologies/factory.py b/methodologies/factory.py
deleted file mode 100644
index 30910fa..0000000
--- a/methodologies/factory.py
+++ /dev/null
@@ -1,13 +0,0 @@
-class MethodologyFactory:
-    _registry = {}
-
-    @classmethod
-    def register_methodology(cls, name, version, methodology_cls):
-        cls._registry[(name, version)] = methodology_cls
-
-    @classmethod
-    def get_methodology(cls, name, version):
-        methodology_cls = cls._registry.get((name, version))
-        if not methodology_cls:
-            raise ValueError(f"Methodology {name} version {version} not found.")
-        return methodology_cls()
diff --git a/methodologies/puro_earth_v3.py b/methodologies/puro_earth_v3.py
deleted file mode 100644
index 1a9b358..0000000
--- a/methodologies/puro_earth_v3.py
+++ /dev/null
@@ -1,15 +0,0 @@
-from .abstract_methodology import BaseMethodology
-
-
-class PuroEarthV3(BaseMethodology):
-    def validate_inputs(self, inputs):
-        pass
-
-    def calculate_removals(self, inputs):
-        pass
-
-    def get_metadata(self):
-        return {"framework": "Puro.earth", "version": "v3"}
-
-    def format_output(self, results):
-        pass
diff --git a/methodologies/templates/__init__.py b/methodologies/templates/__init__.py
deleted file mode 100644
index 143f486..0000000
--- a/methodologies/templates/__init__.py
+++ /dev/null
@@ -1 +0,0 @@
-# __init__.py
diff --git a/poetry.lock b/poetry.lock
index a50b4d9..4de8009 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,5 +1,143 @@
 # This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
 
+[[package]]
+name = "anyio"
+version = "4.7.0"
+description = "High level compatibility layer for multiple asynchronous event loop implementations"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "anyio-4.7.0-py3-none-any.whl", hash = "sha256:ea60c3723ab42ba6fff7e8ccb0488c898ec538ff4df1f1d5e642c3601d07e352"},
+    {file = "anyio-4.7.0.tar.gz", hash = "sha256:2f834749c602966b7d456a7567cafcb309f96482b5081d14ac93ccd457f9dd48"},
+]
+
+[package.dependencies]
+exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
+idna = ">=2.8"
+sniffio = ">=1.1"
+typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
+
+[package.extras]
+doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"]
+trio = ["trio (>=0.26.1)"]
+
+[[package]]
+name = "appnope"
+version = "0.1.4"
+description = "Disable App Nap on macOS >= 10.9"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"},
+    {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
+]
+
+[[package]]
+name = "argon2-cffi"
+version = "23.1.0"
+description = "Argon2 for Python"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"},
+    {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"},
+]
+
+[package.dependencies]
+argon2-cffi-bindings = "*"
+
+[package.extras]
+dev = ["argon2-cffi[tests,typing]", "tox (>4)"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"]
+tests = ["hypothesis", "pytest"]
+typing = ["mypy"]
+
+[[package]]
+name = "argon2-cffi-bindings"
+version = "21.2.0"
+description = "Low-level CFFI bindings for Argon2"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:ccb949252cb2ab3a08c02024acb77cfb179492d5701c7cbdbfd776124d4d2367"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9524464572e12979364b7d600abf96181d3541da11e23ddf565a32e70bd4dc0d"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b746dba803a79238e925d9046a63aa26bf86ab2a2fe74ce6b009a1c3f5c8f2ae"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:58ed19212051f49a523abb1dbe954337dc82d947fb6e5a0da60f7c8471a8476c"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:bd46088725ef7f58b5a1ef7ca06647ebaf0eb4baff7d1d0d177c6cc8744abd86"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-musllinux_1_1_i686.whl", hash = "sha256:8cd69c07dd875537a824deec19f978e0f2078fdda07fd5c42ac29668dda5f40f"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:f1152ac548bd5b8bcecfb0b0371f082037e47128653df2e8ba6e914d384f3c3e"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-win32.whl", hash = "sha256:603ca0aba86b1349b147cab91ae970c63118a0f30444d4bc80355937c950c082"},
+    {file = "argon2_cffi_bindings-21.2.0-cp36-abi3-win_amd64.whl", hash = "sha256:b2ef1c30440dbbcba7a5dc3e319408b59676e2e039e2ae11a8775ecf482b192f"},
+    {file = "argon2_cffi_bindings-21.2.0-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:e415e3f62c8d124ee16018e491a009937f8cf7ebf5eb430ffc5de21b900dad93"},
+    {file = "argon2_cffi_bindings-21.2.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl", hash = "sha256:3e385d1c39c520c08b53d63300c3ecc28622f076f4c2b0e6d7e796e9f6502194"},
+    {file = "argon2_cffi_bindings-21.2.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2c3e3cc67fdb7d82c4718f19b4e7a87123caf8a93fde7e23cf66ac0337d3cb3f"},
+    {file = "argon2_cffi_bindings-21.2.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6a22ad9800121b71099d0fb0a65323810a15f2e292f2ba450810a7316e128ee5"},
+    {file = "argon2_cffi_bindings-21.2.0-pp37-pypy37_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:f9f8b450ed0547e3d473fdc8612083fd08dd2120d6ac8f73828df9b7d45bb351"},
+    {file = "argon2_cffi_bindings-21.2.0-pp37-pypy37_pp73-win_amd64.whl", hash = "sha256:93f9bf70084f97245ba10ee36575f0c3f1e7d7724d67d8e5b08e61787c320ed7"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl", hash = "sha256:3b9ef65804859d335dc6b31582cad2c5166f0c3e7975f324d9ffaa34ee7e6583"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d4966ef5848d820776f5f562a7d45fdd70c2f330c961d0d745b784034bd9f48d"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:20ef543a89dee4db46a1a6e206cd015360e5a75822f76df533845c3cbaf72670"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ed2937d286e2ad0cc79a7087d3c272832865f779430e0cc2b4f3718d3159b0cb"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:5e00316dabdaea0b2dd82d141cc66889ced0cdcbfa599e8b471cf22c620c329a"},
+]
+
+[package.dependencies]
+cffi = ">=1.0.1"
+
+[package.extras]
+dev = ["cogapp", "pre-commit", "pytest", "wheel"]
+tests = ["pytest"]
+
+[[package]]
+name = "arrow"
+version = "1.3.0"
+description = "Better dates & times for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
+]
+
+[package.dependencies]
+python-dateutil = ">=2.7.0"
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
+
+[[package]]
+name = "asttokens"
+version = "3.0.0"
+description = "Annotate AST trees with source code positions"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"},
+    {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"},
+]
+
+[package.extras]
+astroid = ["astroid (>=2,<4)"]
+test = ["astroid (>=2,<4)", "pytest", "pytest-cov", "pytest-xdist"]
+
+[[package]]
+name = "async-lru"
+version = "2.0.4"
+description = "Simple LRU cache for asyncio"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "async-lru-2.0.4.tar.gz", hash = "sha256:b8a59a5df60805ff63220b2a0c5b5393da5521b113cd5465a44eb037d81a5627"},
+    {file = "async_lru-2.0.4-py3-none-any.whl", hash = "sha256:ff02944ce3c288c5be660c42dbcca0742b32c3b279d6dceda655190240b99224"},
+]
+
+[package.dependencies]
+typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
+
 [[package]]
 name = "attrs"
 version = "24.3.0"
@@ -19,6 +157,41 @@ docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphi
 tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
 tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
 
+[[package]]
+name = "babel"
+version = "2.16.0"
+description = "Internationalization utilities"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b"},
+    {file = "babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"},
+]
+
+[package.extras]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
+
+[[package]]
+name = "beautifulsoup4"
+version = "4.12.3"
+description = "Screen-scraping library"
+optional = false
+python-versions = ">=3.6.0"
+files = [
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+chardet = ["chardet"]
+charset-normalizer = ["charset-normalizer"]
+html5lib = ["html5lib"]
+lxml = ["lxml"]
+
 [[package]]
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 version = "24.10.0"
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 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
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+
+[[package]]
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+version = "2024.12.14"
+description = "Python package for providing Mozilla's CA Bundle."
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 [[package]]
 name = "cfgv"
 version = "3.4.0"
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+]
+
 [[package]]
 name = "click"
-version = "8.1.7"
+version = "8.1.8"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
-    {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
+    {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"},
+    {file = "click-8.1.8.tar.gz", hash = "sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"},
 ]
 
 [package.dependencies]
@@ -101,6 +482,23 @@ files = [
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
 
+[[package]]
+name = "comm"
+version = "0.2.2"
+description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
+optional = false
+python-versions = ">=3.8"
+files = [
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+    {file = "comm-0.2.2.tar.gz", hash = "sha256:3fd7a84065306e07bea1773df6eb8282de51ba82f77c72f9c85716ab11fe980e"},
+]
+
+[package.dependencies]
+traitlets = ">=4"
+
+[package.extras]
+test = ["pytest"]
+
 [[package]]
 name = "coverage"
 version = "7.6.9"
@@ -178,6 +576,63 @@ tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.1
 [package.extras]
 toml = ["tomli"]
 
+[[package]]
+name = "debugpy"
+version = "1.8.11"
+description = "An implementation of the Debug Adapter Protocol for Python"
+optional = false
+python-versions = ">=3.8"
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+
+[[package]]
+name = "decorator"
+version = "5.1.1"
+description = "Decorators for Humans"
+optional = false
+python-versions = ">=3.5"
+files = [
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+    {file = "decorator-5.1.1.tar.gz", hash = "sha256:637996211036b6385ef91435e4fae22989472f9d571faba8927ba8253acbc330"},
+]
+
+[[package]]
+name = "defusedxml"
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+description = "XML bomb protection for Python stdlib modules"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+files = [
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+]
+
 [[package]]
 name = "distlib"
 version = "0.3.9"
@@ -203,6 +658,34 @@ files = [
 [package.extras]
 test = ["pytest (>=6)"]
 
+[[package]]
+name = "executing"
+version = "2.1.0"
+description = "Get the currently executing AST node of a frame, and other information"
+optional = false
+python-versions = ">=3.8"
+files = [
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+    {file = "executing-2.1.0.tar.gz", hash = "sha256:8ea27ddd260da8150fa5a708269c4a10e76161e2496ec3e587da9e3c0fe4b9ab"},
+]
+
+[package.extras]
+tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"]
+
+[[package]]
+name = "fastjsonschema"
+version = "2.21.1"
+description = "Fastest Python implementation of JSON schema"
+optional = false
+python-versions = "*"
+files = [
+    {file = "fastjsonschema-2.21.1-py3-none-any.whl", hash = "sha256:c9e5b7e908310918cf494a434eeb31384dd84a98b57a30bcb1f535015b554667"},
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+]
+
+[package.extras]
+devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
+
 [[package]]
 name = "filelock"
 version = "3.16.1"
@@ -220,20 +703,71 @@ testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "diff-cover (>=9.2)", "p
 typing = ["typing-extensions (>=4.12.2)"]
 
 [[package]]
-name = "flake8"
-version = "7.1.1"
-description = "the modular source code checker: pep8 pyflakes and co"
+name = "fqdn"
+version = "1.5.1"
+description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
+optional = false
+python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
+files = [
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+    {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
+]
+
+[[package]]
+name = "h11"
+version = "0.14.0"
+description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
+optional = false
+python-versions = ">=3.7"
+files = [
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+    {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"},
+]
+
+[[package]]
+name = "httpcore"
+version = "1.0.7"
+description = "A minimal low-level HTTP client."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "httpcore-1.0.7-py3-none-any.whl", hash = "sha256:a3fff8f43dc260d5bd363d9f9cf1830fa3a458b332856f34282de498ed420edd"},
+    {file = "httpcore-1.0.7.tar.gz", hash = "sha256:8551cb62a169ec7162ac7be8d4817d561f60e08eaa485234898414bb5a8a0b4c"},
+]
+
+[package.dependencies]
+certifi = "*"
+h11 = ">=0.13,<0.15"
+
+[package.extras]
+asyncio = ["anyio (>=4.0,<5.0)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+trio = ["trio (>=0.22.0,<1.0)"]
+
+[[package]]
+name = "httpx"
+version = "0.28.1"
+description = "The next generation HTTP client."
 optional = false
-python-versions = ">=3.8.1"
+python-versions = ">=3.8"
 files = [
-    {file = "flake8-7.1.1-py2.py3-none-any.whl", hash = "sha256:597477df7860daa5aa0fdd84bf5208a043ab96b8e96ab708770ae0364dd03213"},
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+    {file = "httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad"},
+    {file = "httpx-0.28.1.tar.gz", hash = "sha256:75e98c5f16b0f35b567856f597f06ff2270a374470a5c2392242528e3e3e42fc"},
 ]
 
 [package.dependencies]
-mccabe = ">=0.7.0,<0.8.0"
-pycodestyle = ">=2.12.0,<2.13.0"
-pyflakes = ">=3.2.0,<3.3.0"
+anyio = "*"
+certifi = "*"
+httpcore = "==1.*"
+idna = "*"
+
+[package.extras]
+brotli = ["brotli", "brotlicffi"]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "identify"
@@ -249,6 +783,20 @@ files = [
 [package.extras]
 license = ["ukkonen"]
 
+[[package]]
+name = "idna"
+version = "3.10"
+description = "Internationalized Domain Names in Applications (IDNA)"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
+    {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
+]
+
+[package.extras]
+all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2)"]
+
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
@@ -260,6 +808,91 @@ files = [
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
 ]
 
+[[package]]
+name = "ipykernel"
+version = "6.29.5"
+description = "IPython Kernel for Jupyter"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "ipykernel-6.29.5-py3-none-any.whl", hash = "sha256:afdb66ba5aa354b09b91379bac28ae4afebbb30e8b39510c9690afb7a10421b5"},
+    {file = "ipykernel-6.29.5.tar.gz", hash = "sha256:f093a22c4a40f8828f8e330a9c297cb93dcab13bd9678ded6de8e5cf81c56215"},
+]
+
+[package.dependencies]
+appnope = {version = "*", markers = "platform_system == \"Darwin\""}
+comm = ">=0.1.1"
+debugpy = ">=1.6.5"
+ipython = ">=7.23.1"
+jupyter-client = ">=6.1.12"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+matplotlib-inline = ">=0.1"
+nest-asyncio = "*"
+packaging = "*"
+psutil = "*"
+pyzmq = ">=24"
+tornado = ">=6.1"
+traitlets = ">=5.4.0"
+
+[package.extras]
+cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
+pyqt5 = ["pyqt5"]
+pyside6 = ["pyside6"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.23.5)", "pytest-cov", "pytest-timeout"]
+
+[[package]]
+name = "ipython"
+version = "8.31.0"
+description = "IPython: Productive Interactive Computing"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "ipython-8.31.0-py3-none-any.whl", hash = "sha256:46ec58f8d3d076a61d128fe517a51eb730e3aaf0c184ea8c17d16e366660c6a6"},
+    {file = "ipython-8.31.0.tar.gz", hash = "sha256:b6a2274606bec6166405ff05e54932ed6e5cfecaca1fc05f2cacde7bb074d70b"},
+]
+
+[package.dependencies]
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+decorator = "*"
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
+jedi = ">=0.16"
+matplotlib-inline = "*"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\" and sys_platform != \"emscripten\""}
+prompt_toolkit = ">=3.0.41,<3.1.0"
+pygments = ">=2.4.0"
+stack_data = "*"
+traitlets = ">=5.13.0"
+typing_extensions = {version = ">=4.6", markers = "python_version < \"3.12\""}
+
+[package.extras]
+all = ["ipython[black,doc,kernel,matplotlib,nbconvert,nbformat,notebook,parallel,qtconsole]", "ipython[test,test-extra]"]
+black = ["black"]
+doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[test]", "matplotlib", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "sphinxcontrib-jquery", "tomli", "typing_extensions"]
+kernel = ["ipykernel"]
+matplotlib = ["matplotlib"]
+nbconvert = ["nbconvert"]
+nbformat = ["nbformat"]
+notebook = ["ipywidgets", "notebook"]
+parallel = ["ipyparallel"]
+qtconsole = ["qtconsole"]
+test = ["packaging", "pickleshare", "pytest", "pytest-asyncio (<0.22)", "testpath"]
+test-extra = ["curio", "ipython[test]", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.23)", "pandas", "trio"]
+
+[[package]]
+name = "isoduration"
+version = "20.11.0"
+description = "Operations with ISO 8601 durations"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"},
+    {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"},
+]
+
+[package.dependencies]
+arrow = ">=0.15.0"
+
 [[package]]
 name = "isort"
 version = "5.13.2"
@@ -274,6 +907,67 @@ files = [
 [package.extras]
 colors = ["colorama (>=0.4.6)"]
 
+[[package]]
+name = "jedi"
+version = "0.19.2"
+description = "An autocompletion tool for Python that can be used for text editors."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"},
+    {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"},
+]
+
+[package.dependencies]
+parso = ">=0.8.4,<0.9.0"
+
+[package.extras]
+docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx (==1.8.5)", "sphinx-rtd-theme (==0.4.3)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"]
+qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
+testing = ["Django", "attrs", "colorama", "docopt", "pytest (<9.0.0)"]
+
+[[package]]
+name = "jinja2"
+version = "3.1.5"
+description = "A very fast and expressive template engine."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "jinja2-3.1.5-py3-none-any.whl", hash = "sha256:aba0f4dc9ed8013c424088f68a5c226f7d6097ed89b246d7749c2ec4175c6adb"},
+    {file = "jinja2-3.1.5.tar.gz", hash = "sha256:8fefff8dc3034e27bb80d67c671eb8a9bc424c0ef4c0826edbff304cceff43bb"},
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+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
+[[package]]
+name = "json5"
+version = "0.10.0"
+description = "A Python implementation of the JSON5 data format."
+optional = false
+python-versions = ">=3.8.0"
+files = [
+    {file = "json5-0.10.0-py3-none-any.whl", hash = "sha256:19b23410220a7271e8377f81ba8aacba2fdd56947fbb137ee5977cbe1f5e8dfa"},
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+
+[[package]]
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+version = "3.0.0"
+description = "Identify specific nodes in a JSON document (RFC 6901)"
+optional = false
+python-versions = ">=3.7"
+files = [
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+
 [[package]]
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 version = "4.23.0"
@@ -287,9 +981,17 @@ files = [
 
 [package.dependencies]
 attrs = ">=22.2.0"
+fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format-nongpl\""}
 jsonschema-specifications = ">=2023.03.6"
 referencing = ">=0.28.4"
+rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
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+uri-template = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+webcolors = {version = ">=24.6.0", optional = true, markers = "extra == \"format-nongpl\""}
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
@@ -310,25 +1012,406 @@ files = [
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+optional = false
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+
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+python-versions = ">=3.8"
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+packaging = "*"
+pandocfilters = ">=1.4.1"
+pygments = ">=2.4.1"
+tinycss2 = "*"
+traitlets = ">=5.1"
+
+[package.extras]
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+qtpdf = ["pyqtwebengine (>=5.15)"]
+qtpng = ["pyqtwebengine (>=5.15)"]
+serve = ["tornado (>=6.1)"]
+test = ["flaky", "ipykernel", "ipywidgets (>=7.5)", "pytest (>=7)"]
+webpdf = ["playwright"]
+
+[[package]]
+name = "nbformat"
+version = "5.10.4"
+description = "The Jupyter Notebook format"
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-python-versions = ">=3.6"
+python-versions = ">=3.8"
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+[package.dependencies]
+fastjsonschema = ">=2.15"
+jsonschema = ">=2.6"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+traitlets = ">=5.1"
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
+test = ["pep440", "pre-commit", "pytest", "testpath"]
+
 [[package]]
-name = "mypy-extensions"
-version = "1.0.0"
-description = "Type system extensions for programs checked with the mypy type checker."
+name = "nest-asyncio"
+version = "1.6.0"
+description = "Patch asyncio to allow nested event loops"
 optional = false
 python-versions = ">=3.5"
 files = [
-    {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
-    {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
+    {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"},
+    {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"},
 ]
 
 [[package]]
@@ -342,6 +1425,23 @@ files = [
     {file = "nodeenv-1.9.1.tar.gz", hash = "sha256:6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f"},
 ]
 
+[[package]]
+name = "notebook-shim"
+version = "0.2.4"
+description = "A shim layer for notebook traits and config"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "notebook_shim-0.2.4-py3-none-any.whl", hash = "sha256:411a5be4e9dc882a074ccbcae671eda64cceb068767e9a3419096986560e1cef"},
+    {file = "notebook_shim-0.2.4.tar.gz", hash = "sha256:b4b2cfa1b65d98307ca24361f5b30fe785b53c3fd07b7a47e89acb5e6ac638cb"},
+]
+
+[package.dependencies]
+jupyter-server = ">=1.8,<3"
+
+[package.extras]
+test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"]
+
 [[package]]
 name = "numpy"
 version = "1.26.4"
@@ -387,6 +1487,17 @@ files = [
     {file = "numpy-1.26.4.tar.gz", hash = "sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010"},
 ]
 
+[[package]]
+name = "overrides"
+version = "7.7.0"
+description = "A decorator to automatically detect mismatch when overriding a method."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "overrides-7.7.0-py3-none-any.whl", hash = "sha256:c7ed9d062f78b8e4c1a7b70bd8796b35ead4d9f510227ef9c5dc7626c60d7e49"},
+    {file = "overrides-7.7.0.tar.gz", hash = "sha256:55158fa3d93b98cc75299b1e67078ad9003ca27945c76162c1c0766d6f91820a"},
+]
+
 [[package]]
 name = "packaging"
 version = "24.2"
@@ -484,6 +1595,32 @@ sql-other = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-d
 test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)"]
 xml = ["lxml (>=4.9.2)"]
 
+[[package]]
+name = "pandocfilters"
+version = "1.5.1"
+description = "Utilities for writing pandoc filters in python"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+files = [
+    {file = "pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"},
+    {file = "pandocfilters-1.5.1.tar.gz", hash = "sha256:002b4a555ee4ebc03f8b66307e287fa492e4a77b4ea14d3f934328297bb4939e"},
+]
+
+[[package]]
+name = "parso"
+version = "0.8.4"
+description = "A Python Parser"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "parso-0.8.4-py2.py3-none-any.whl", hash = "sha256:a418670a20291dacd2dddc80c377c5c3791378ee1e8d12bffc35420643d43f18"},
+    {file = "parso-0.8.4.tar.gz", hash = "sha256:eb3a7b58240fb99099a345571deecc0f9540ea5f4dd2fe14c2a99d6b281ab92d"},
+]
+
+[package.extras]
+qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
+testing = ["docopt", "pytest"]
+
 [[package]]
 name = "pathspec"
 version = "0.12.1"
@@ -495,6 +1632,20 @@ files = [
     {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
 ]
 
+[[package]]
+name = "pexpect"
+version = "4.9.0"
+description = "Pexpect allows easy control of interactive console applications."
+optional = false
+python-versions = "*"
+files = [
+    {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"},
+    {file = "pexpect-4.9.0.tar.gz", hash = "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"},
+]
+
+[package.dependencies]
+ptyprocess = ">=0.5"
+
 [[package]]
 name = "platformdirs"
 version = "4.3.6"
@@ -545,14 +1696,97 @@ pyyaml = ">=5.1"
 virtualenv = ">=20.10.0"
 
 [[package]]
-name = "pycodestyle"
-version = "2.12.1"
-description = "Python style guide checker"
+name = "prometheus-client"
+version = "0.21.1"
+description = "Python client for the Prometheus monitoring system."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "prometheus_client-0.21.1-py3-none-any.whl", hash = "sha256:594b45c410d6f4f8888940fe80b5cc2521b305a1fafe1c58609ef715a001f301"},
+    {file = "prometheus_client-0.21.1.tar.gz", hash = "sha256:252505a722ac04b0456be05c05f75f45d760c2911ffc45f2a06bcaed9f3ae3fb"},
+]
+
+[package.extras]
+twisted = ["twisted"]
+
+[[package]]
+name = "prompt-toolkit"
+version = "3.0.48"
+description = "Library for building powerful interactive command lines in Python"
+optional = false
+python-versions = ">=3.7.0"
+files = [
+    {file = "prompt_toolkit-3.0.48-py3-none-any.whl", hash = "sha256:f49a827f90062e411f1ce1f854f2aedb3c23353244f8108b89283587397ac10e"},
+    {file = "prompt_toolkit-3.0.48.tar.gz", hash = "sha256:d6623ab0477a80df74e646bdbc93621143f5caf104206aa29294d53de1a03d90"},
+]
+
+[package.dependencies]
+wcwidth = "*"
+
+[[package]]
+name = "psutil"
+version = "6.1.1"
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 email = ["email-validator (>=1.0.3)"]
 
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@@ -679,6 +1916,20 @@ files = [
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 six = ">=1.5"
 
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+
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 version = "2024.2"
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+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+files = [
+    {file = "Send2Trash-1.8.3-py3-none-any.whl", hash = "sha256:0c31227e0bd08961c7665474a3d1ef7193929fedda4233843689baa056be46c9"},
+    {file = "Send2Trash-1.8.3.tar.gz", hash = "sha256:b18e7a3966d99871aefeb00cfbcfdced55ce4871194810fc71f4aa484b953abf"},
+]
+
+[package.extras]
+nativelib = ["pyobjc-framework-Cocoa", "pywin32"]
+objc = ["pyobjc-framework-Cocoa"]
+win32 = ["pywin32"]
+
+[[package]]
+name = "setuptools"
+version = "75.6.0"
+description = "Easily download, build, install, upgrade, and uninstall Python packages"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "setuptools-75.6.0-py3-none-any.whl", hash = "sha256:ce74b49e8f7110f9bf04883b730f4765b774ef3ef28f722cce7c273d253aaf7d"},
+    {file = "setuptools-75.6.0.tar.gz", hash = "sha256:8199222558df7c86216af4f84c30e9b34a61d8ba19366cc914424cdbd28252f6"},
+]
+
+[package.extras]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.7.0)"]
+core = ["importlib_metadata (>=6)", "jaraco.collections", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"]
+cover = ["pytest-cov"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
+enabler = ["pytest-enabler (>=2.2)"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (>=1.12,<1.14)", "pytest-mypy"]
+
 [[package]]
 name = "six"
 version = "1.17.0"
@@ -890,6 +2386,86 @@ files = [
     {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
 ]
 
+[[package]]
+name = "sniffio"
+version = "1.3.1"
+description = "Sniff out which async library your code is running under"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"},
+    {file = "sniffio-1.3.1.tar.gz", hash = "sha256:f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc"},
+]
+
+[[package]]
+name = "soupsieve"
+version = "2.6"
+description = "A modern CSS selector implementation for Beautiful Soup."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"},
+    {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"},
+]
+
+[[package]]
+name = "stack-data"
+version = "0.6.3"
+description = "Extract data from python stack frames and tracebacks for informative displays"
+optional = false
+python-versions = "*"
+files = [
+    {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"},
+    {file = "stack_data-0.6.3.tar.gz", hash = "sha256:836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9"},
+]
+
+[package.dependencies]
+asttokens = ">=2.1.0"
+executing = ">=1.2.0"
+pure-eval = "*"
+
+[package.extras]
+tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
+
+[[package]]
+name = "terminado"
+version = "0.18.1"
+description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"},
+    {file = "terminado-0.18.1.tar.gz", hash = "sha256:de09f2c4b85de4765f7714688fff57d3e75bad1f909b589fde880460c753fd2e"},
+]
+
+[package.dependencies]
+ptyprocess = {version = "*", markers = "os_name != \"nt\""}
+pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
+tornado = ">=6.1.0"
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"]
+
+[[package]]
+name = "tinycss2"
+version = "1.4.0"
+description = "A tiny CSS parser"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "tinycss2-1.4.0-py3-none-any.whl", hash = "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289"},
+    {file = "tinycss2-1.4.0.tar.gz", hash = "sha256:10c0972f6fc0fbee87c3edb76549357415e94548c1ae10ebccdea16fb404a9b7"},
+]
+
+[package.dependencies]
+webencodings = ">=0.4"
+
+[package.extras]
+doc = ["sphinx", "sphinx_rtd_theme"]
+test = ["pytest", "ruff"]
+
 [[package]]
 name = "tomli"
 version = "2.2.1"
@@ -931,6 +2507,52 @@ files = [
     {file = "tomli-2.2.1.tar.gz", hash = "sha256:cd45e1dc79c835ce60f7404ec8119f2eb06d38b1deba146f07ced3bbc44505ff"},
 ]
 
+[[package]]
+name = "tornado"
+version = "6.4.2"
+description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:e828cce1123e9e44ae2a50a9de3055497ab1d0aeb440c5ac23064d9e44880da1"},
+    {file = "tornado-6.4.2-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:072ce12ada169c5b00b7d92a99ba089447ccc993ea2143c9ede887e0937aa803"},
+    {file = "tornado-6.4.2-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1a017d239bd1bb0919f72af256a970624241f070496635784d9bf0db640d3fec"},
+    {file = "tornado-6.4.2-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:c36e62ce8f63409301537222faffcef7dfc5284f27eec227389f2ad11b09d946"},
+    {file = "tornado-6.4.2-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bca9eb02196e789c9cb5c3c7c0f04fb447dc2adffd95265b2c7223a8a615ccbf"},
+    {file = "tornado-6.4.2-cp38-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:304463bd0772442ff4d0f5149c6f1c2135a1fae045adf070821c6cdc76980634"},
+    {file = "tornado-6.4.2-cp38-abi3-musllinux_1_2_i686.whl", hash = "sha256:c82c46813ba483a385ab2a99caeaedf92585a1f90defb5693351fa7e4ea0bf73"},
+    {file = "tornado-6.4.2-cp38-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:932d195ca9015956fa502c6b56af9eb06106140d844a335590c1ec7f5277d10c"},
+    {file = "tornado-6.4.2-cp38-abi3-win32.whl", hash = "sha256:2876cef82e6c5978fde1e0d5b1f919d756968d5b4282418f3146b79b58556482"},
+    {file = "tornado-6.4.2-cp38-abi3-win_amd64.whl", hash = "sha256:908b71bf3ff37d81073356a5fadcc660eb10c1476ee6e2725588626ce7e5ca38"},
+    {file = "tornado-6.4.2.tar.gz", hash = "sha256:92bad5b4746e9879fd7bf1eb21dce4e3fc5128d71601f80005afa39237ad620b"},
+]
+
+[[package]]
+name = "traitlets"
+version = "5.14.3"
+description = "Traitlets Python configuration system"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
+    {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
+]
+
+[package.extras]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
+
+[[package]]
+name = "types-python-dateutil"
+version = "2.9.0.20241206"
+description = "Typing stubs for python-dateutil"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "types_python_dateutil-2.9.0.20241206-py3-none-any.whl", hash = "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"},
+    {file = "types_python_dateutil-2.9.0.20241206.tar.gz", hash = "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb"},
+]
+
 [[package]]
 name = "typing-extensions"
 version = "4.12.2"
@@ -953,6 +2575,37 @@ files = [
     {file = "tzdata-2024.2.tar.gz", hash = "sha256:7d85cc416e9382e69095b7bdf4afd9e3880418a2413feec7069d533d6b4e31cc"},
 ]
 
+[[package]]
+name = "uri-template"
+version = "1.3.0"
+description = "RFC 6570 URI Template Processor"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
+    {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
+]
+
+[package.extras]
+dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-modern-annotations", "flake8-noqa", "flake8-pyproject", "flake8-requirements", "flake8-typechecking-import", "flake8-use-fstring", "mypy", "pep8-naming", "types-PyYAML"]
+
+[[package]]
+name = "urllib3"
+version = "2.3.0"
+description = "HTTP library with thread-safe connection pooling, file post, and more."
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "urllib3-2.3.0-py3-none-any.whl", hash = "sha256:1cee9ad369867bfdbbb48b7dd50374c0967a0bb7710050facf0dd6911440e3df"},
+    {file = "urllib3-2.3.0.tar.gz", hash = "sha256:f8c5449b3cf0861679ce7e0503c7b44b5ec981bec0d1d3795a07f1ba96f0204d"},
+]
+
+[package.extras]
+brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
+socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
+zstd = ["zstandard (>=0.18.0)"]
+
 [[package]]
 name = "virtualenv"
 version = "20.28.0"
@@ -973,7 +2626,56 @@ platformdirs = ">=3.9.1,<5"
 docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
 test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
+[[package]]
+name = "wcwidth"
+version = "0.2.13"
+description = "Measures the displayed width of unicode strings in a terminal"
+optional = false
+python-versions = "*"
+files = [
+    {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
+    {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},
+]
+
+[[package]]
+name = "webcolors"
+version = "24.11.1"
+description = "A library for working with the color formats defined by HTML and CSS."
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"},
+    {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"},
+]
+
+[[package]]
+name = "webencodings"
+version = "0.5.1"
+description = "Character encoding aliases for legacy web content"
+optional = false
+python-versions = "*"
+files = [
+    {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"},
+    {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
+]
+
+[[package]]
+name = "websocket-client"
+version = "1.8.0"
+description = "WebSocket client for Python with low level API options"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"},
+    {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"]
+optional = ["python-socks", "wsaccel"]
+test = ["websockets"]
+
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10,<4.0"
-content-hash = "334c67d193843a4b642fd12928815afdc3f22eba41505e700cd7d79a556abd60"
+content-hash = "d3c1d17a29e1f4ddcfc58f3e0ffe750d5ae6741c7cd37f800b0f0e3e4dba281d"
diff --git a/pyproject.toml b/pyproject.toml
index 0af15f1..47a037b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -15,10 +15,10 @@ numpy = ">=1.24,<2.0"
 pandas = "^2.0"
 pydantic = "^1.10.2"
 jsonschema = "^4.16.0"
+jupyterlab = "^4.0.5"
 
 [tool.poetry.dev-dependencies]
 black = "24.10.0"
-flake8 = "7.1.1"
 isort = "5.13.2"
 pre-commit = "4.0.1"
 pytest = "^7.1.2"
@@ -29,19 +29,15 @@ requires = ["poetry-core>=1.0.0"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.black]
-line-length = 88
+line-length = 100
 target-version = ["py310", "py311", "py312"]
 
 [tool.isort]
 profile = "black"
-line_length = 88
+line_length = 100
 multi_line_output = 3
 include_trailing_comma = true
 
-[tool.flake8]
-max-line-length = 88
-exclude = ["build/", "dist/"]
-
 [tool.pre-commit]
 repos = [
     { repo = "https://github.com/psf/black", rev = "24.10.0", hooks = [{ id = "black" }] },
@@ -51,5 +47,4 @@ repos = [
         { id = "trailing-whitespace" },
         { id = "end-of-file-fixer" },
         { id = "check-yaml" }
-    ] }
-]
+    ]}]
diff --git a/sequestrae_engine/__init__.py b/sequestrae_engine/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/core/__init__.py b/sequestrae_engine/core/__init__.py
similarity index 100%
rename from core/__init__.py
rename to sequestrae_engine/core/__init__.py
diff --git a/core/biochar_properties.py b/sequestrae_engine/core/biochar_properties.py
similarity index 100%
rename from core/biochar_properties.py
rename to sequestrae_engine/core/biochar_properties.py
diff --git a/core/constants.py b/sequestrae_engine/core/constants.py
similarity index 85%
rename from core/constants.py
rename to sequestrae_engine/core/constants.py
index 05721c9..8a57ca1 100644
--- a/core/constants.py
+++ b/sequestrae_engine/core/constants.py
@@ -9,3 +9,5 @@
     "emissions": None,  # Standard unit for emissions
     "feedstock_quantity": None,  # Standard unit for feedstock quantities
 }
+
+LATEST_METHOD_VERSIONS = {"puro_earth": "v3", "verra": "v1"}
diff --git a/sequestrae_engine/core/exceptions.py b/sequestrae_engine/core/exceptions.py
new file mode 100644
index 0000000..f6f4e65
--- /dev/null
+++ b/sequestrae_engine/core/exceptions.py
@@ -0,0 +1,16 @@
+import json
+
+
+class SequestraeValidationError(Exception):
+    """
+    Custom exception for validation errors with structured feedback.
+    """
+
+    def __init__(self, errors):
+        """
+        :param errors: A list of dictionaries detailing validation errors.
+        """
+        self.errors = errors
+
+    def __str__(self):
+        return json.dumps(self.errors, indent=2)
diff --git a/sequestrae_engine/core/input_validation.py b/sequestrae_engine/core/input_validation.py
new file mode 100644
index 0000000..cb3a390
--- /dev/null
+++ b/sequestrae_engine/core/input_validation.py
@@ -0,0 +1,142 @@
+from sequestrae_engine.core.constants import LATEST_METHOD_VERSIONS
+from sequestrae_engine.core.exceptions import SequestraeValidationError
+from sequestrae_engine.core.utilities import load_schema, remove_empty_dicts, validate_json_data
+from sequestrae_engine.methodologies.factory import MethodologyFactory
+
+
+def rebuild_user_inputs(user_inputs, schema):
+    """
+    Rebuilds the user inputs dictionary to include only the fields defined in the current methodology schema,
+    including nested properties.
+
+    :param user_inputs: Dictionary containing the original user inputs.
+    :param schema: The schema for the specific methodology.
+    :return: A rebuilt dictionary with only the relevant fields and a list of ignored fields.
+    """
+    schema_properties = schema.get("properties", {})
+    rebuilt_inputs = {}
+    ignored_fields = []
+
+    for field, field_schema in schema_properties.items():
+        if field in user_inputs:
+            # If the field is an object, recurse into its properties
+            if field_schema.get("type") == "object" and "properties" in field_schema:
+                sub_rebuilt, sub_ignored = rebuild_user_inputs(user_inputs[field], field_schema)
+                rebuilt_inputs[field] = sub_rebuilt
+                ignored_fields.extend([f"{field}.{sub_field}" for sub_field in sub_ignored])
+            else:
+                # Direct field
+                rebuilt_inputs[field] = user_inputs[field]
+        else:
+            # Field not in user inputs; treat as ignored
+            ignored_fields.append(field)
+
+    # Add any top-level ignored fields
+    ignored_fields.extend([field for field in user_inputs.keys() if field not in schema_properties])
+    return rebuilt_inputs, ignored_fields
+
+
+def validate_methodology_inputs(user_input, methodology_list):
+    """
+    Validates user inputs against methodology-specific rules.
+    """
+    validated_methods = []
+    errors = []
+    ignored_fields_messages = {}
+
+    for methodology_dict in methodology_list:
+        name = methodology_dict.get("name")
+        version = methodology_dict.get("version", LATEST_METHOD_VERSIONS.get(name))
+
+        if not version:
+            errors.append(
+                {"context": f"{name}", "message": f"No version specified or available for {name}."}
+            )
+            continue
+
+        try:
+            specific_schema = load_schema("methodology", methodology=name, version=version)
+            # Rebuild user inputs based on methodology schema and track any ignored fields
+            rebuilt_inputs, ignored_fields = rebuild_user_inputs(user_input, specific_schema)
+
+            # Instantiate the methodology class and validate inputs
+            methodology_instance = MethodologyFactory.get_methodology(name, version)
+            methodology_instance.validate_inputs(rebuilt_inputs)
+
+            validated_methods.append((name, version))
+
+            if ignored_fields:
+                ignored_fields_messages[f"{name} {version}"] = ignored_fields
+
+        except SequestraeValidationError as e:
+            errors.append({"context": f"{name} {version} inputs", "message": e.errors})
+        except Exception as e:
+            errors.append({"context": f"{name} {version}", "message": str(e)})
+
+    return validated_methods, errors, ignored_fields_messages
+
+
+def validate_input(data):
+    """
+    Validates the input data against methodology-specific schemas.
+
+    :param data: Dictionary containing 'user_inputs' and 'methodologies'.
+                 'user_inputs' is a dictionary of user-provided inputs.
+                 'methodologies' is a list of dictionaries, each containing 'name' and 'version' of the methodology.
+    :return: A tuple containing:
+             - validated_methods: A list of tuples with validated methodology names and versions.
+             - methodology_errors: A dictionary of errors encountered during validation.
+             - ignored_fields_messages: A dictionary of ignored fields for each methodology.
+    :raises SequestraeValidationError: If there are errors in the input data or no methodologies are validated.
+    """
+    errors = []
+    user_input = data.get("user_inputs")
+    methodology_list = data.get("methodologies")
+
+    if not user_input:
+        errors.append(
+            {
+                "context": "user_inputs",
+                "message": "Missing 'user_inputs' section in the input data.",
+            }
+        )
+
+    if len(user_input) == 0:
+        errors.append(
+            {
+                "context": "user_inputs",
+                "message": "No user inputs specified for validation.",
+            }
+        )
+
+    if not methodology_list:
+        errors.append(
+            {
+                "context": "methodologies",
+                "message": "Missing 'methodologies' section in the input data.",
+            }
+        )
+
+    methodology_list = remove_empty_dicts(methodology_list)
+
+    if len(methodology_list) == 0:
+        errors.append(
+            {
+                "context": "methodologies",
+                "message": "No methodologies specified for validation.",
+            }
+        )
+
+    # Stop here if there are major problems with the input data
+    if errors:
+        raise SequestraeValidationError(errors)
+    else:
+        validated_methods, methodology_errors, ignored_fields_messages = (
+            validate_methodology_inputs(user_input, methodology_list)
+        )
+
+        # in case there is problem with all the required methodologies, raise an error
+        if not validated_methods:
+            raise SequestraeValidationError(methodology_errors)
+
+        return validated_methods, methodology_errors, ignored_fields_messages
diff --git a/sequestrae_engine/core/utilities.py b/sequestrae_engine/core/utilities.py
new file mode 100644
index 0000000..0ff1b2e
--- /dev/null
+++ b/sequestrae_engine/core/utilities.py
@@ -0,0 +1,123 @@
+import json
+import logging
+import os
+
+from jsonschema import validate, validators
+
+from sequestrae_engine.core.constants import LATEST_METHOD_VERSIONS
+from sequestrae_engine.core.exceptions import SequestraeValidationError
+
+# Configure logging to include the package name
+logging.basicConfig(
+    level=logging.INFO, format="%(asctime)s - %(name)s - %(levelname)s - %(message)s"
+)
+logger = logging.getLogger(__name__)
+
+
+def read_json(file_path):
+    """
+    Reads a JSON file and returns the data as a dictionary.
+
+    :param file_path: Path to the JSON file.
+    :return: Dictionary containing data read from the JSON file.
+    :raises: FileNotFoundError, json.JSONDecodeError
+    """
+    if not os.path.exists(file_path):
+        logger.error(f"File not found: {file_path}")
+        raise FileNotFoundError(f"File not found: {file_path}")
+
+    with open(file_path, "r") as file:
+        try:
+            json_dict = json.load(file)
+            logger.info(f"Successfully read JSON file: {file_path}")
+            return json_dict
+        except json.JSONDecodeError as e:
+            logger.error(f"Error decoding JSON from file {file_path}: {e}")
+            raise e
+
+
+def write_json(file_path, json_dict):
+    """
+    Writes a dictionary to a JSON file.
+
+    :param file_path: Path to the JSON file.
+    :param json_dict: Dictionary to write to the JSON file.
+    :raises: TypeError, IOError
+    """
+    with open(file_path, "w") as file:
+        try:
+            json.dump(json_dict, file, indent=4)
+            logger.info(f"Successfully wrote JSON to file: {file_path}")
+        except TypeError as e:
+            logger.error(f"Error encoding data to JSON for file {file_path}: {e}")
+            raise e
+        except IOError as e:
+            logger.error(f"Error writing to file {file_path}: {e}")
+            raise e
+
+
+def load_schema(schema_type, methodology=None, version=None):
+    """
+    Loads a JSON schema from the file system.
+
+    :param schema_type: Type of schema to load ('user_input' or 'methodology').
+    :param methodology: Name of the methodology (required if schema_type is 'methodology').
+    :param version: Version of the methodology (optional, defaults to latest version).
+    :return: Dictionary containing the JSON schema.
+    :raises: FileNotFoundError, json.JSONDecodeError
+    """
+    base_path = os.path.dirname(__file__)
+
+    if schema_type == "user_input":
+        schema_path = os.path.join(base_path, "../data/input_schema.json")
+    elif schema_type == "methodology":
+        if not methodology:
+            raise ValueError("Methodology name must be provided for methodology schema type.")
+        if not version:
+            version = LATEST_METHOD_VERSIONS.get(methodology)
+        schema_path = os.path.join(
+            base_path,
+            f"../data/{methodology}/{methodology}_methodology_input_{version}.json",
+        )
+    else:
+        raise ValueError("Invalid schema type. Must be 'user_input' or 'methodology'.")
+
+    return read_json(schema_path)
+
+
+def validate_json_data(json_dict, schema, context=""):
+    """
+    Validates a JSON data instance against a schema and returns all validation errors.
+
+    :param json_dict: The JSON data instance to validate (typically a dictionary).
+    :param schema: The JSON schema to validate against.
+    :param context: Context information for error messages.
+    :raises: SequestraeValidationError with all error messages if validation fails.
+    """
+    # Get the validator class from the schema
+    validator_class = validators.validator_for(schema)
+    validator = validator_class(schema)
+
+    # Collect all errors
+    errors = list(validator.iter_errors(json_dict))
+
+    if errors:
+        # Build comprehensive error message
+        error_details = []
+        for error in errors:
+            path = " -> ".join(str(p) for p in error.path) if error.path else "root"
+            error_details.append({"input_field": path, "message": error.message})
+
+        raise SequestraeValidationError(error_details)
+
+
+def remove_empty_dicts(data_list: list) -> list:
+    """Remove empty dictionaries from a list.
+
+    Args:
+        data_list (list): List containing dictionaries
+
+    Returns:
+        list: List with empty dictionaries removed
+    """
+    return [d for d in data_list if d]  # Empty dicts evaluate to False
diff --git a/sequestrae_engine/data/puro_earth/puro_earth_methodology_input_v3.json b/sequestrae_engine/data/puro_earth/puro_earth_methodology_input_v3.json
new file mode 100644
index 0000000..3b6419a
--- /dev/null
+++ b/sequestrae_engine/data/puro_earth/puro_earth_methodology_input_v3.json
@@ -0,0 +1,173 @@
+{
+  "$schema": "https://json-schema.org/draft/2020-12/schema",
+  "title": "PuroEarth v3 Methodology-Specific Input Schema",
+  "type": "object",
+  "required": [
+    "feedstock",
+    "production_process",
+    "biochar_properties",
+    "biochar_application",
+    "lifecycle_emissions"
+  ],
+  "properties": {
+    "feedstock": {
+      "type": "object",
+      "description": "Feedstock constraints specific to the PuroEarth methodology.",
+      "properties": {
+        "feedstock_type": {
+          "type": "string",
+          "description": "Accepted feedstock types for PuroEarth.",
+          "enum": [
+            "forestry_residues",
+            "agricultural_waste",
+            "urban_wood_waste"
+          ]
+        },
+        "moisture_content": {
+          "type": "number",
+          "description": "Moisture content must be between 10% and 50% for PuroEarth.",
+          "minimum": 10,
+          "maximum": 50
+        },
+        "sustainability_compliance": {
+          "type": "object",
+          "description": "Sustainability compliance evidence for the feedstock.",
+          "properties": {
+            "certification": {
+              "type": "string",
+              "description": "Accepted certifications for feedstock sustainability.",
+              "enum": ["FSC", "PEFC", "None"]
+            }
+          },
+          "required": ["certification"]
+        }
+      },
+      "required": [
+        "feedstock_type",
+        "moisture_content",
+        "sustainability_compliance"
+      ],
+      "additionalProperties": false
+    },
+    "production_process": {
+      "type": "object",
+      "description": "Production process constraints specific to the PuroEarth methodology.",
+      "properties": {
+        "technology_type": {
+          "type": "string",
+          "description": "Accepted technologies for PuroEarth.",
+          "enum": ["pyrolysis", "gasification"]
+        },
+        "production_temperature": {
+          "type": "number",
+          "description": "Production temperature must be between 500 and 900 degrees Celsius.",
+          "minimum": 500,
+          "maximum": 900
+        },
+        "energy_source": {
+          "type": "string",
+          "description": "Accepted energy sources for PuroEarth production processes.",
+          "enum": ["renewable", "fossil_based"]
+        },
+        "process_emissions_control": {
+          "type": "boolean",
+          "description": "Indicates whether methane capture or other emissions controls are in place."
+        }
+      },
+      "required": [
+        "technology_type",
+        "production_temperature",
+        "energy_source",
+        "process_emissions_control"
+      ],
+      "additionalProperties": false
+    },
+    "biochar_properties": {
+      "type": "object",
+      "description": "Biochar property constraints specific to the PuroEarth methodology.",
+      "properties": {
+        "h_c_ratio": {
+          "type": "number",
+          "description": "Hydrogen-to-organic-carbon molar ratio must be <= 0.7.",
+          "maximum": 0.7
+        },
+        "organic_carbon_content": {
+          "type": "number",
+          "description": "Organic carbon content must be between 70% and 90% for PuroEarth.",
+          "minimum": 70,
+          "maximum": 90
+        },
+        "ash_content": {
+          "type": "number",
+          "description": "Ash content must be <= 10%.",
+          "maximum": 10
+        }
+      },
+      "required": ["h_c_ratio", "organic_carbon_content", "ash_content"],
+      "additionalProperties": false
+    },
+    "biochar_application": {
+      "type": "object",
+      "description": "Application constraints specific to the PuroEarth methodology.",
+      "properties": {
+        "application_type": {
+          "type": "string",
+          "description": "Accepted applications for PuroEarth.",
+          "enum": ["soil", "construction_materials"]
+        },
+        "co_benefits": {
+          "type": "object",
+          "description": "Optional co-benefits associated with the biochar application.",
+          "properties": {
+            "soil_improvement": {
+              "type": "boolean",
+              "description": "Indicates whether the biochar application improves soil properties."
+            },
+            "biodiversity": {
+              "type": "boolean",
+              "description": "Indicates whether the biochar application enhances biodiversity."
+            }
+          }
+        }
+      },
+      "required": ["application_type"],
+      "additionalProperties": false
+    },
+    "lifecycle_emissions": {
+      "type": "object",
+      "description": "Lifecycle emissions constraints specific to the PuroEarth methodology.",
+      "properties": {
+        "baseline_emission_evidence": {
+          "type": ["string", "null"],
+          "description": "Optional evidence for non-zero baseline emissions."
+        },
+        "process_emissions": {
+          "type": "object",
+          "properties": {
+            "pre_treatment": {
+              "type": "number",
+              "description": "Emissions from feedstock pre-treatment in tonnes CO2e."
+            },
+            "fugitive_emissions": {
+              "type": ["number", "null"],
+              "description": "Optional: Potential fugitive emissions from storage or handling in tonnes CO2e."
+            }
+          },
+          "required": ["pre_treatment"],
+          "additionalProperties": false
+        },
+        "transportation_emissions": {
+          "type": "number",
+          "description": "Emissions from transporting feedstock or biochar in tonnes CO2e."
+        },
+        "transport_mode": {
+          "type": "string",
+          "description": "Mode of transportation for feedstock or biochar.",
+          "enum": ["road", "rail", "sea", "air"]
+        }
+      },
+      "required": ["process_emissions"],
+      "additionalProperties": false
+    }
+  }
+}
diff --git a/data/puro_earth/v3.json b/sequestrae_engine/data/puro_earth/puro_earth_v3_factors.json
similarity index 100%
rename from data/puro_earth/v3.json
rename to sequestrae_engine/data/puro_earth/puro_earth_v3_factors.json
diff --git a/data/verra/v1.json b/sequestrae_engine/data/verra/v1.json
similarity index 100%
rename from data/verra/v1.json
rename to sequestrae_engine/data/verra/v1.json
diff --git a/examples/__init__.py b/sequestrae_engine/examples/__init__.py
similarity index 100%
rename from examples/__init__.py
rename to sequestrae_engine/examples/__init__.py
diff --git a/methodologies/__init__.py b/sequestrae_engine/methodologies/__init__.py
similarity index 100%
rename from methodologies/__init__.py
rename to sequestrae_engine/methodologies/__init__.py
diff --git a/sequestrae_engine/methodologies/abstract_methodology.py b/sequestrae_engine/methodologies/abstract_methodology.py
new file mode 100644
index 0000000..4d30cd0
--- /dev/null
+++ b/sequestrae_engine/methodologies/abstract_methodology.py
@@ -0,0 +1,20 @@
+from abc import ABC, abstractmethod
+
+
+class BaseMethodology(ABC):
+    """
+    Abstract base class for all methodologies.
+    """
+
+    # Methodology metadata to be defined in subclasses
+    methodology_name = None
+    methodology_version = None
+
+    @abstractmethod
+    def validate_inputs(self, user_input):
+        """
+        Validates inputs specific to the methodology.
+        :param user_input: Dictionary of user inputs.
+        :raises: ValidationError if validation fails.
+        """
+        pass
diff --git a/sequestrae_engine/methodologies/factory.py b/sequestrae_engine/methodologies/factory.py
new file mode 100644
index 0000000..1bc5a7f
--- /dev/null
+++ b/sequestrae_engine/methodologies/factory.py
@@ -0,0 +1,23 @@
+from sequestrae_engine.methodologies.puro_earth_v3 import PuroEarthV3
+from sequestrae_engine.methodologies.verra_v1 import VerraV1
+
+
+class MethodologyFactory:
+    """
+    Factory for creating and validating methodology-specific logic.
+    """
+
+    METHODOLOGY_CLASSES = {
+        "puro_earth": {"v3": PuroEarthV3},
+        "verra": {"v1": VerraV1},
+    }
+
+    @staticmethod
+    def get_methodology(name, version):
+        """
+        Retrieve the methodology class for a given name and version.
+        """
+        try:
+            return MethodologyFactory.METHODOLOGY_CLASSES[name][version]()
+        except KeyError:
+            raise ValueError(f"Unsupported methodology: {name} version {version}")
diff --git a/sequestrae_engine/methodologies/puro_earth_v3.py b/sequestrae_engine/methodologies/puro_earth_v3.py
new file mode 100644
index 0000000..e258f10
--- /dev/null
+++ b/sequestrae_engine/methodologies/puro_earth_v3.py
@@ -0,0 +1,42 @@
+from sequestrae_engine.core.exceptions import SequestraeValidationError
+from sequestrae_engine.core.utilities import load_schema, validate_json_data
+from sequestrae_engine.methodologies.abstract_methodology import BaseMethodology
+
+
+class PuroEarthV3(BaseMethodology):
+    """
+    Implementation of PuroEarth v3 methodology.
+    """
+
+    methodology_name = "puro_earth"
+    methodology_version = "v3"
+
+    def validate_inputs(self, user_input):
+        """
+        Validates user inputs against PuroEarth-specific rules.
+        """
+        # Load schema using class attributes
+        schema_json = load_schema(
+            "methodology", methodology=self.methodology_name, version=self.methodology_version
+        )
+
+        # Validate against JSON schema
+        validate_json_data(
+            user_input,
+            schema_json,
+            context=f"{self.methodology_name} {self.methodology_version} inputs",
+        )
+
+        # Example of additional custom validation
+        moisture_content = user_input.get("feedstock", {}).get("moisture_content")
+        if moisture_content is not None and (moisture_content < 10 or moisture_content > 50):
+            raise SequestraeValidationError(
+                [
+                    {
+                        "field": "feedstock.moisture_content",
+                        "expected": "between 10 and 50",
+                        "actual": moisture_content,
+                        "context": f"{self.methodology_name} {self.methodology_version}",
+                    }
+                ]
+            )
diff --git a/methodologies/verra_v1.py b/sequestrae_engine/methodologies/verra_v1.py
similarity index 100%
rename from methodologies/verra_v1.py
rename to sequestrae_engine/methodologies/verra_v1.py
diff --git a/sequestrae_engine/notebooks/playground.ipynb b/sequestrae_engine/notebooks/playground.ipynb
new file mode 100644
index 0000000..597d53a
--- /dev/null
+++ b/sequestrae_engine/notebooks/playground.ipynb
@@ -0,0 +1,163 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "id": "fc70276c-bd2c-4acd-a34b-a4d23bc64548",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from sequestrae_engine.core.input_validation import validate_input\n",
+    "from sequestrae_engine.core.exceptions import SequestraeValidationError\n",
+    "\n",
+    "test_input = {\n",
+    "    \"user_inputs\": {\n",
+    "           \"feedstock\": {\n",
+    "            \"feedstock_type\": \"forestry_residues\",\n",
+    "            \"moisture_content\": 40,\n",
+    "            \"sustainability_compliance\": {\n",
+    "                \"certification\": \"FSC\"\n",
+    "            },\n",
+    "            \"origin\": \"forest\",\n",
+    "            \"geography\": \"US\"\n",
+    "        },\n",
+    "        \"production_process\": {\n",
+    "            \"technology_type\": \"pyrolysis\",\n",
+    "            \"production_temperature\": 600,\n",
+    "            \"energy_source\": \"renewable\",\n",
+    "            \"process_emissions_control\": True\n",
+    "        },\n",
+    "        \"biochar_properties\": {\n",
+    "            \"h_c_ratio\": 0.5,\n",
+    "            \"organic_carbon_content\": 85,\n",
+    "            \"ash_content\": 8\n",
+    "        },\n",
+    "        \"biochar_application\": {\n",
+    "            \"application_type\": \"soil\",\n",
+    "            \"co_benefits\": {\n",
+    "                \"soil_improvement\": True,\n",
+    "                \"biodiversity\": False\n",
+    "            }\n",
+    "        },\n",
+    "        \"lifecycle_emissions\": {\n",
+    "            \"baseline_emission_evidence\": None,\n",
+    "            \"process_emissions\": {\n",
+    "                \"pre_treatment\": 1.2,\n",
+    "                \"fugitive_emissions\": 0.4\n",
+    "            },\n",
+    "            \"transportation_emissions\": 2.0,\n",
+    "            \"transport_mode\": \"road\"\n",
+    "        }\n",
+    "    },\n",
+    "    \"methodologies\": [\n",
+    "        {\n",
+    "            \"name\": \"puro_earth\"\n",
+    "        },\n",
+    "         {\n",
+    "            \"name\": \"rivera\",\n",
+    "        }\n",
+    "    ]\n",
+    "}"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 9,
+   "id": "eacb2786-8bfc-4bc8-9dba-b991895f2324",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "2024-12-31 12:25:53,120 - sequestrae_engine.core.utilities - INFO - Successfully read JSON file: /Users/duphan/Projects/sequestrae-engine/sequestrae_engine/core/../data/puro_earth/puro_earth_methodology_input_v3.json\n",
+      "2024-12-31 12:25:53,121 - sequestrae_engine.core.utilities - INFO - Successfully read JSON file: /Users/duphan/Projects/sequestrae-engine/sequestrae_engine/core/../data/puro_earth/puro_earth_methodology_input_v3.json\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Validated Methodologies:\n",
+      "  - Methodology: puro_earth, Version: v3\n",
+      "[{'context': 'rivera', 'message': 'No version specified or available for rivera.'}]\n"
+     ]
+    }
+   ],
+   "source": [
+    "\n",
+    "    # Call the validate_input function with the test data\n",
+    "    validated_methods, error_log, ignored_fields = validate_input(test_input)\n",
+    "\n",
+    "    # Print validated methods\n",
+    "    print(\"Validated Methodologies:\")\n",
+    "    for method in validated_methods:\n",
+    "        print(f\"  - Methodology: {method[0]}, Version: {method[1]}\")\n",
+    "\n",
+    "    # Print error log\n",
+    "    if error_log:\n",
+    "        print(error_log)\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "id": "ad0fc126-8cf4-42c8-92b2-f74ee4d0e704",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "[{'context': 'rivera',\n",
+       "  'message': 'No version specified or available for rivera.'}]"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "error_log"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "f9f9d135-190c-4313-b7d8-20f4be83369f",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5fd4399e-7bf3-4892-afbc-9f0106397bb4",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.8"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tests/__init__.py b/sequestrae_engine/tests/__init__.py
similarity index 100%
rename from tests/__init__.py
rename to sequestrae_engine/tests/__init__.py
diff --git a/sequestrae_engine/tests/test_input_validation.py b/sequestrae_engine/tests/test_input_validation.py
new file mode 100644
index 0000000..8f0efea
--- /dev/null
+++ b/sequestrae_engine/tests/test_input_validation.py
@@ -0,0 +1,73 @@
+import pytest
+from jsonschema.exceptions import ValidationError as JsonSchemaValidationError
+
+from sequestrae_engine.core.exceptions import SequestraeValidationError
+from sequestrae_engine.core.input_validation import validate_input
+
+
+@pytest.fixture
+def valid_user_input():
+    return {
+        "feedstock": {
+            "feedstock_type": "forestry_residues",
+            "moisture_content": 20,
+            "sustainability_compliance": {"certification": "FSC"},
+            "origin": "forest",
+            "geography": "US",
+        },
+        "production_process": {
+            "technology_type": "pyrolysis",
+            "production_temperature": 600,
+            "energy_source": "renewable",
+            "process_emissions_control": True,
+        },
+        "biochar_properties": {"h_c_ratio": 0.5, "organic_carbon_content": 80, "ash_content": 5},
+        "biochar_application": {
+            "application_type": "soil",
+            "co_benefits": {"soil_improvement": True, "biodiversity": False},
+        },
+        "lifecycle_emissions": {
+            "baseline_emission_evidence": None,
+            "process_emissions": {"pre_treatment": 1.0, "fugitive_emissions": None},
+            "transportation_emissions": 0.5,
+            "transport_mode": "road",
+        },
+    }
+
+
+@pytest.fixture
+def valid_methodology_list():
+    return [{"name": "puro_earth", "version": "v3"}]
+
+
+def test_valid_input(valid_user_input, valid_methodology_list):
+    data = {"user_inputs": valid_user_input, "methodologies": valid_methodology_list}
+    validated_methods, error_log, ignored_fields = validate_input(data)
+    assert len(validated_methods) == 1
+    assert not error_log
+
+
+def test_missing_optional_fields(valid_user_input, valid_methodology_list):
+    user_input = valid_user_input.copy()
+    user_input["feedstock"].pop("origin")
+    user_input["feedstock"].pop("geography")
+    data = {"user_inputs": user_input, "methodologies": valid_methodology_list}
+    validated_methods, error_log, ignored_fields = validate_input(data)
+    assert len(validated_methods) == 1
+    assert not error_log
+
+
+def test_invalid_feedstock_type(valid_user_input, valid_methodology_list):
+    user_input = valid_user_input.copy()
+    user_input["feedstock"]["feedstock_type"] = "invalid_type"
+    data = {"user_inputs": user_input, "methodologies": valid_methodology_list}
+    with pytest.raises(SequestraeValidationError):
+        validate_input(data)
+
+
+def test_missing_required_fields(valid_user_input, valid_methodology_list):
+    user_input = valid_user_input.copy()
+    user_input["feedstock"].pop("feedstock_type")
+    data = {"user_inputs": user_input, "methodologies": valid_methodology_list}
+    with pytest.raises(SequestraeValidationError):
+        validate_input(data)
diff --git a/tests/test_json_io.py b/sequestrae_engine/tests/test_json_io.py
similarity index 86%
rename from tests/test_json_io.py
rename to sequestrae_engine/tests/test_json_io.py
index c3648c6..30313b6 100644
--- a/tests/test_json_io.py
+++ b/sequestrae_engine/tests/test_json_io.py
@@ -2,7 +2,7 @@
 
 import pytest
 
-from core.utilities import read_json, write_json
+from sequestrae_engine.core.utilities import read_json, write_json
 
 
 def test_read_json_valid(tmp_path):
@@ -22,9 +22,7 @@ def test_read_json_invalid(tmp_path):
     with pytest.raises(json.JSONDecodeError) as exc_info:
         read_json(file_path)
 
-    assert "Expecting" in str(
-        exc_info.value
-    )  # Common error message for unclosed JSON objects
+    assert "Expecting" in str(exc_info.value)  # Common error message for unclosed JSON objects
 
 
 def test_write_json(tmp_path):