From e986411adec09cec95de8bd3127403e47a34942d Mon Sep 17 00:00:00 2001 From: Pedro Madrigal Date: Mon, 23 Jan 2023 14:54:06 +0000 Subject: [PATCH] update README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1a8f5d2..3de396b 100644 --- a/README.md +++ b/README.md @@ -4,8 +4,8 @@ This is a Nextflow workflow designed to download data for an EGA dataset and arr There are two operating modes: - * Use the pyega3 client to pull files directly from EGA. This will only work for datasets without the older .gpg encryption, with all files using .cip. - * Download files from a 'dropbox' provided to you from EGA staff. This is usually done where there are issues using the official client. + * Use the [pyega3](https://github.com/EGA-archive/ega-download-client) client to pull files directly from EGA. This will only work for datasets without the older .gpg encryption, with all files using .cip. + * Download files from a 'dropbox' provided to you from EGA staff. This is usually done where there are issues using the official client (this mode is currently deprecated). Note that there is no provision to use the old EGA Java client, which we have found difficult to use successfully.