DESCRIPTION

Package: DivComAnalyses
Title: Community Analysis and visualisation using R
Version: 0.0.0.9000
Authors@R: 
    person(given = "Florentin",
           family = "CONSTANCIAS",
           role = c("aut", "cre"),
           email = "florentinconstancias@gmail.com",
           comment = c(ORCID = "0000-0002-8612-384X"))
Description: Based on phyloseq R package the aim of this package is to: facilitate data filtering (i.e., potential contaminants identified using decontam R package), help in normalizing data (i.e., 16S qPCR normalization), generate phylogenetic and taxonomic alpha-diversity metrics, visualize community composition and structure using ordination, facilitate statistical analysis based on DEseq2, ALDex, vegan R packages.
License: Apache License (>= 2.0)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
URL: https://github.com/fconstancias/DivComAnalyses
BugReports: https://github.com/fconstancias/DivComAnalyses/issues
Suggests: 
    covr,
    testthat,
    spelling
Language: en-US
Imports: 
    ggplot2,
    dplyr,
    phyloseq,
    ampvis2,
    speedyseq,
    HTSSIP,
    metagMisc,
    microbiome,
    ggpubr,
    decontam,
    DESeq2,
    ALDEx2,
    mctoolsr,
    fantaxtic,
    GGally,
    microbiomeSeq,
    ape,
    abdiv,
    GUniFrac,
    zCompositions,
    Rtsne,
    ggrepel,
    plotly,
    vegan