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cpansecpanse
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Merge pull request #82 from leoschwarz/setup-initial-cd
Setup CD pipeline for rawrassembly
2 parents efd836c + a4cd8fc commit b146c08

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‎.github/workflows/cd_rawrrassembly.yml

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name: CD RawrrAssembly
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on:
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workflow_dispatch:
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release:
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types: [created]
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env:
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DOTNET_DOCKER: mcr.microsoft.com/dotnet/sdk:8.0
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jobs:
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build:
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name: Build Assembly
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Pull image
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run: docker pull $DOTNET_DOCKER
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- name: Build
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run: cd inst/rawrrassembly && docker run --rm -v $PWD:/app -w /app $DOTNET_DOCKER /app/build.sh /app /app/out
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- name: Publish results
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uses: actions/upload-artifact@v4
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with:
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name: rawrr
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path: inst/rawrrassembly/out
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retention-days: 1
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verify-linux:
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name: Verify on Linux
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runs-on: ubuntu-latest
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needs: build
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steps:
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- uses: actions/checkout@v4
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- name: Download results
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uses: actions/download-artifact@v4
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with:
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name: rawrr
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- name: List result
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run: tree
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- name: Make executable
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run: chmod +x rawrr-linux-x64
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- name: Execute on test file
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run: ./rawrr-linux-x64 ./inst/extdata/sample.raw index
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verify-windows:
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name: Verify on Windows
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runs-on: windows-latest
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needs: build
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steps:
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- uses: actions/checkout@v4
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- name: Download results
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uses: actions/download-artifact@v4
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with:
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name: rawrr
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- name: List result
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run: dir
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- name: Execute on test file
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run: .\rawrr-win-x64.exe .\inst\extdata\sample.raw index
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verify-macos:
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name: Verify on MacOS
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runs-on: macos-latest
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needs: build
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steps:
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- uses: actions/checkout@v4
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- name: Download results
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uses: actions/download-artifact@v4
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with:
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name: rawrr
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- name: List result
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run: ls -l
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- name: Make executable
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run: chmod +x rawrr-osx-x64
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- name: Execute on test file
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run: ./rawrr-osx-x64 ./inst/extdata/sample.raw index
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upload-release-artifacts:
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name: Upload Release Artifacts
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runs-on: ubuntu-latest
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needs:
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- verify-linux
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- verify-windows
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- verify-macos
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if: github.event_name == 'release'
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steps:
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- uses: actions/checkout@v4
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- name: Download all artifacts
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uses: actions/download-artifact@v4
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with:
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name: rawrr
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path: dist
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- name: Upload Release Assets
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uses: softprops/action-gh-release@v1
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with:
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files: |
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dist/rawrr-linux-x64
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dist/rawrr-win-x64.exe
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dist/rawrr-osx-x64
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/r.yml

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branches: [ devel ]
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workflow_dispatch:
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
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jobs:
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build:
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runs-on: ubuntu-20.04

‎inst/rawrrassembly/.gitignore

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ThermoFisher.CommonCore.Data.dll
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ThermoFisher.CommonCore.MassPrecisionEstimator.dll
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ThermoFisher.CommonCore.RawFileReader.dll
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rawrr.exe
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*.dll
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*.exe
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*.zip
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publish

‎inst/rawrrassembly/build.sh

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#!/bin/bash
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set -euxo pipefail
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if [ "$#" -ne 2 ]; then
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echo "Usage: $0 <project_folder> <output_folder>"
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exit 1
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fi
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project_folder="$1"
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output_folder="$2"
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work_folder="/tmp/build"
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# debug:
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#apt-get update && apt-get upgrade -y && apt-get install -y zip tree
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# Checkout the deps
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mkdir /tmp/build-dir && cd /tmp/build-dir
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git clone --depth=1 https://github.com/thermofisherlsms/RawFileReader.git
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dotnet nuget add source "$PWD"/RawFileReader/Libs/NetCore/Net8/
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# Perform the release
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cp -r "$project_folder" "$work_folder"
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cd "$work_folder"
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runtimes="linux-x64 osx-x64 win-x64"
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for runtime in $runtimes; do
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dotnet publish --runtime "$runtime" -c Release
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done
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# debug:
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#tree bin/Release/net8.0
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mkdir -p "$output_folder"
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# Export the result
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for runtime in $runtimes; do
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source_path="bin/Release/net8.0/$runtime/publish"
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suffix=""
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if [[ "$runtime" == win-* ]]; then
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suffix=".exe"
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fi
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cp "$source_path/rawrr$suffix" "$output_folder/rawrr-$runtime$suffix"
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done

‎inst/rawrrassembly/rawrr.csproj

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<Project Sdk="Microsoft.NET.Sdk">
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<PropertyGroup>
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<OutputType>Exe</OutputType>
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<TargetFramework>net8.0</TargetFramework> <!-- Or net7.0, depending on your setup -->
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<AssemblyName>rawrr</AssemblyName>
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<PublishSingleFile>true</PublishSingleFile>
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<SelfContained>true</SelfContained>
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<TargetFramework>net8.0</TargetFramework>
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<SelfContained>true</SelfContained>
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<PublishTrimmed>false</PublishTrimmed>
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<PublishSingleFile>true</PublishSingleFile>
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<PublishReadyToRun>true</PublishReadyToRun>
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</PropertyGroup>
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<ItemGroup>
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<PackageReference Include="ThermoFisher.CommonCore.BackgroundSubtraction" Version="8.0.6" />
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<PackageReference Include="Thermofisher.CommonCore.MassPrecisionEstimator" Version="8.0.6" />
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<PackageReference Include="ThermoFisher.CommonCore.Data" Version="8.0.6" />
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<PackageReference Include="ThermoFisher.CommonCore.MassPrecisionEstimator" Version="8.0.6" />
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<PackageReference Include="ThermoFisher.CommonCore.RawFileReader" Version="8.0.6" />
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</ItemGroup>
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</Project>

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