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align_DNA failing #2

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philliplab opened this issue Sep 23, 2016 · 4 comments
Open

align_DNA failing #2

philliplab opened this issue Sep 23, 2016 · 4 comments

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@philliplab
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philliplab commented Sep 23, 2016 •
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A galosh profile is built. Then when I try to align_DNA one of the element sequences used to build the galosh profile back to the profile, the program hangs (just runs at 100% cpu and produces no output).

The commands (2nd one hangs):

profuse/alignedFastaToProfile_DNA cap008_profile.fasta consensus.fasta profile.galosh

profuse/align_DNA profile.galosh profile_element.fasta

Will upload the files in comments to this issue
@philliplab
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cap008_profile.txt

@philliplab
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consensus.txt

@philliplab
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profile_element.txt

@philliplab
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these are fasta files, I just had to change the extension to .txt for github

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