install_genomethreader

#!/bin/sh -e

PUBLIC_HTML_CURRENT=/var/www/servers/genomethreader.org/htdocs
DISTRIBUTIONS=distributions
ZBH_MACHINE=gremme@marburg.zbh.uni-hamburg.de
ZBH_DIR=/projects/gth

if [ $# -ne 1 ]
then
  echo "provide distribution dir as argument" >&2
  exit 1
fi

DISTRIBUTION_DIR=$1

# install locally
echo "install locally"
cp $DISTRIBUTION_DIR/*.tar.gz $PUBLIC_HTML_CURRENT/$DISTRIBUTIONS

# install at ZBH
echo "remove old distributions at the ZBH"
ssh $ZBH_MACHINE "rm -rf $ZBH_DIR/*" || true

echo "copy new distributions to the ZBH"
scp $DISTRIBUTION_DIR/*.tar.gz $ZBH_MACHINE:$ZBH_DIR

echo "extract new distributions"
for DISTRIBUTION in `cd $DISTRIBUTION_DIR && ls *.tar.gz`
do
  ssh $ZBH_MACHINE "cd $ZBH_DIR && tar xzf $DISTRIBUTION"
done

echo "remove tar files"
ssh $ZBH_MACHINE "rm -rf $ZBH_DIR/*.tar.gz"

echo "rename distribution directories"
for SINGLE_DISTRIBUTION in `ssh $ZBH_MACHINE "cd $ZBH_DIR && ls"`
do
  NEW_DISTRIBUTION_NAME=`echo $SINGLE_DISTRIBUTION | sed -e 's/gth-[0-9.]*-//' -e 's/.tar.gz//'`
  ssh $ZBH_MACHINE "cd $ZBH_DIR && mv $SINGLE_DISTRIBUTION  $NEW_DISTRIBUTION_NAME"
done