Merge pull request #1258 from glotzerlab/release/v3.1.0

Release/v3.1.0
glotzerlab · Jun 17, 2024 · ba5998e · ba5998e
2 parents 658493e + 979ff76
commit ba5998e
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diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml
@@ -26,7 +26,7 @@ body:
     attributes:
       label: freud Version
       description: What version of freud are you using?
-      placeholder: v3.0.0
+      placeholder: v3.1.0
     validations:
       required: true
   - type: input

diff --git a/.mailmap b/.mailmap
@@ -64,3 +64,4 @@ Alain Kadar <[email protected]> AlainKadar <[email protected]
 Alain Kadar <[email protected]> AlainKadar <[email protected]>
 Melody Zhang <[email protected]> Melody Zhang <[email protected]>
 Melody Zhang <[email protected]> yiyuanmz <[email protected]>
+Jen Bradley <[email protected]> janbridley <[email protected]>
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -5,7 +5,7 @@ exclude: (?:^extern/)
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: 'v4.5.0'
+    rev: 'v4.6.0'
     hooks:
       - id: end-of-file-fixer
         exclude: |
@@ -56,7 +56,7 @@ repos:
           - --add=This file is from the freud project, released under the BSD 3-Clause License.
           - --comment-prefix=//
   - repo: https://github.com/asottile/pyupgrade
-    rev: 'v3.15.2'
+    rev: 'v3.16.0'
     hooks:
       - id: pyupgrade
         args:
@@ -66,7 +66,7 @@ repos:
     hooks:
       - id: isort
   - repo: https://github.com/psf/black
-    rev: '24.3.0'
+    rev: '24.4.2'
     hooks:
       - id: black
   - repo: https://github.com/PyCQA/flake8
@@ -83,7 +83,7 @@ repos:
     hooks:
       - id: cmake-format
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: 'v18.1.2'
+    rev: 'v18.1.6'
     hooks:
       - id: clang-format
         types_or: [c, c++]

diff --git a/ChangeLog.md b/ChangeLog.md
@@ -4,15 +4,13 @@ The format is based on
 and this project adheres to
 [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v3.1.0 -- 20xx-xx-xx
+## v3.1.0 -- 2024-06-17
 
 ### Added
 * New continuous coordination number compute `freud.order.ContinuousCoordination`.
 * New methods for conversion of box lengths and angles to/from `freud.box.Box`.
-* Support Numpy 2.0.
-
-### Changed
 * Add copy button to documentation code snippets.
+* Support Numpy 2.0.
 
 ### Fixed
 * Default value for `terminate_after_blocked` in `FilterRAD`.

diff --git a/contributors.txt b/contributors.txt
@@ -1,17 +1,17 @@
   2373	Bradley Dice <[email protected]>
   2148	Vyas Ramasubramani <[email protected]>
   1030	Eric Harper <[email protected]>
-  1000	Tommy Waltmann <[email protected]>
+  1030	Tommy Waltmann <[email protected]>
    456	Jin Soo Ihm <[email protected]>
-   328	Joshua A. Anderson <[email protected]>
-   275	dependabot <dependabot[bot]@users.noreply.github.com>
+   366	Joshua A. Anderson <[email protected]>
+   294	dependabot <dependabot[bot]@users.noreply.github.com>
    240	Matthew Spellings <[email protected]>
-   202	DomFijan <[email protected]>
+   230	DomFijan <[email protected]>
    167	Kelly Wang <[email protected]>
+   126	Brandon Butler <[email protected]>
    110	Erin Teich <[email protected]>
-    98	Brandon Butler <[email protected]>
+   105	pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
     94	Charlotte Shiqi Zhao <[email protected]>
-    94	pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
     66	M. Eric Irrgang <[email protected]>
     53	Chrisy Du <[email protected]>
     41	Yezhi Jin <[email protected]>
@@ -47,6 +47,7 @@
      4	Mayank Agrawal <[email protected]>
      4	William Zygmunt <[email protected]>
      3	Greg van Anders <[email protected]>
+     3	Jen Bradley <[email protected]>
      3	Rose Cersonsky <[email protected]>
      3	Wenbo Shen <[email protected]>
      2	Emily Siew <[email protected]>

diff --git a/doc/source/conf.py b/doc/source/conf.py
@@ -77,8 +77,8 @@
 # built documents.
 #
 # version and release are set the same for this package.
-version = "3.0.0"
-release = "3.0.0"
+version = "3.1.0"
+release = "3.1.0"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/doc/source/gettingstarted/examples b/doc/source/gettingstarted/examples
diff --git a/freud/__init__.py b/freud/__init__.py
@@ -23,7 +23,7 @@
 # automatic selection runs, the user cannot change it.
 set_num_threads(0)
 
-__version__ = "3.0.0"
+__version__ = "3.1.0"
 
 __all__ = [
     "__version__",

diff --git a/setup.cfg b/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 3.0.0
+current_version = 3.1.0
 commit = True
 tag = False
 message = Bump up to version {new_version}.

diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 from skbuild import setup
 
-version = "3.0.0"
+version = "3.1.0"
 
 # Read README for PyPI, fallback to short description if it fails.
 description = "Powerful, efficient trajectory analysis in scientific Python."
+4 −4		.github/workflows/test.yml
+1 −0		.gitignore
+6 −6		.pre-commit-config.yaml
+3 −3		environment.yml
+16 −22		examples/Benchmarking RDF against MDAnalysis.ipynb
+1 −1		examples/HOOMD-MC-W6/.gitignore
+103 −99		examples/HOOMD-MC-W6/HOOMD-MC-W6.ipynb
+6 −6		examples/Identifying Local Environments in a Complex Crystal.ipynb
+2 −1		examples/Smectic.ipynb
+49 −50		examples/Visualization with fresnel.ipynb
+50 −43		examples/Visualization with plato.ipynb
+16 −24		module_intros/density.CorrelationFunction.ipynb
+11 −17		module_intros/diffraction.StaticStructureFactor.ipynb