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Copy pathMyLake_setPriors_for_MCMC.m
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MyLake_setPriors_for_MCMC.m
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% Generating Prior structure. For this application we will have an entry
% into the Prior even for parameters not varied. Put in a switch for that.
MaxMinSed = ...
[0.1 10;
0.01 1; ...
0.0123 0.0123;...
0.01 0.01;...
3.92 3.92;...
2415 2415; ...
0.0293 0.0293;...
0.001 0.001; ...
0.1 0.1;...
1e-2 1;...
0.1 0.1;...
0.1 0.1; ...
0.1 0.1;...
100 100; ...
1 1; ...
0.1 0.1;...
0.1 0.1; ...
3.17 3.17;...
0.1 0.1;...
1.35 1.35;...
1.35 1.35; ...
6500 6500;...
0.1 0.1; ...
2500 2500; ...
0.001 0.001;...
21.3 21.3; ...
0.37 0.37;...
3e-6 3e-6; ...
8e-2 8e-2; ...
1000 1000;...
0.001 0.001;...
0.01 50
1e-6 1e-6;...
1.35 1.35;...
0.98 0.98;...
0.85 0.85;...
0.5 0.5;...
1 1;...
10 10;...
64 64;...
15 15;...
0.26 0.26;...
14.4 14.4;...;
112 112;...
10 10;...
1 1;...
200 200;...
20 20;...
1 1;...
0.001 0.001];
K_values_sediment ...
= {1, 'k_OM1'; % 1
0.1, 'k_OM2'; % 0.01
0.0123,'Km_O2';
0.01, 'Km_NO3';
3.92, 'Km_Fe(OH)3';
2415, 'Km_FeOOH';
0.0293,'Km_SO4';
0.001, 'Km_oxao';
0.1, 'Km_amao';
0.3292,'Kin_O2';
0.1, 'Kin_NO3';
0.1, 'Kin_FeOH3';
0.1, 'Kin_FeOOH';
2000, 'k_amox';
% 8.7e4, 'k_Feox';
8.7e1, 'k_Feox'; % Original is too fast for our time steps. This term cause instability in R8 and mass balance for Fe fails
0.1, 'k_Sdis';
2500, 'k_Spre';
3.17, 'k_FeS2pre';
0.1, 'k_alum';
1.35, 'k_pdesorb_a';
1.35, 'k_pdesorb_b';
6500, 'k_rhom';
0.1, 'k_tS_Fe';
2510, 'Ks_FeS';
0.001, 'k_Fe_dis';
21.3, 'k_Fe_pre';
0.37, 'k_apa';
3e-6, 'kapa';
0.3134,'k_oms';
1000, 'k_tsox';
0.001, 'k_FeSpre';
30, 'accel';
1e-6, 'f_pfe';
1.35, 'k_pdesorb_c';
% Added porosity modeling parameters:
0.98, 'fi_in';
0.85, 'fi_f';
0.5, 'X_b';
1, 'tortuosity';
0.1, 'w';
128, 'n';
10, 'depth';
0.26, 'F';
14.4, 'alfa0';
% OM composition
112, 'Cx1';
10, 'Ny1';
1, 'Pz1';
200, 'Cx2';
20, 'Ny2';
1, 'Pz2';
0.001, 'ts';
};
MaxMinLake = [0.9 1.1; 1e-6 1e-2; 1e-6 0.1; 1e-6 0.01; 0 1; 0 4; 1.97 1.97; 1 20; 1 20; 1 20; 0.9 1.1];
K_values_lake = ...
{1.05, 'I_scDOC'; % 0.1, 2 #2
0, 'qy_DOC'; % optimized 0.165
0, 'oc_DOC'; % optimized 0.039
1e-3, 'k_BOD'; % 0.01, 10 #3 optimized 0.25
1, 'theta_bod'; % 0.5 1.1 #4
1, 'theta_bod_ice'; % 0.5 1.1 # higher reduces DOC reduction
1.97, 'I_scT'; % optimized
2, 'w_s'; % 0.01-10
1, 'w_chl'; % 0.1-50
10, 'theta_T'; % 0 20
0.9, 'I_scO'; % 1e-1, 2 #6
1.7, 'Q10';
1, 'wc_factor';
4.8497, 'T_ref';
};
for ii=1:50 %for sediment priors
Priors(ii).name = K_values_sediment(ii,2);
Priors(ii).min = MaxMinSed(ii,1);
Priors(ii).max = MaxMinSed(ii,2);
Priors(ii).default = K_values_sediment(ii,1);
end
for ii=1:11 %for lake parameters
Param(50+ii).name = K_values_lake(ii,2);
Param(50+ii).type = 'uniform';
Param(50+ii).values(1) = MaxMinLake(ii,1);
Param(50+ii).values(2) = MaxMinLake(ii,2);
end