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Use google-nucleus for parsing sequencing data #25

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gwarmstrong opened this issue Oct 22, 2019 · 0 comments
Open

Use google-nucleus for parsing sequencing data #25

gwarmstrong opened this issue Oct 22, 2019 · 0 comments

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@gwarmstrong
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gwarmstrong commented Oct 22, 2019 •
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It could be nice to take advantage of google's nucleus for parsing sequencing data.

In this colab notebook, it looks nice to work with, potentially saving time and memory on parsing and sampling data.

It may be a bit of a pain to incorporate with pytorch and will need some benchmarking if implemented.
See these links for some starting info on this front.
https://discuss.pytorch.org/t/read-dataset-from-tfrecord-format/16409/7
https://github.com/pgmmpk/tfrecord
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