diff --git a/lib/HMF/Pipeline/Strelka.pm b/lib/HMF/Pipeline/Strelka.pm index 8c67800..56bbbb6 100644 --- a/lib/HMF/Pipeline/Strelka.pm +++ b/lib/HMF/Pipeline/Strelka.pm @@ -58,6 +58,7 @@ sub run { sub checkRecalibratedSample { my ($sample, $sample_bam_path, $opt) = @_; + say "\nLooking for existing recalibrated bam at: $sample_bam_path"; if (index($sample_bam_path, "recalibrated.bam") == -1) { say "\nMissing recalibrated file for sample: $sample"; my ($recalibrated_bam, $recalibration_jobs) = runRecalibrationOnSample($sample, $opt);