diff --git a/settings/SingleSampleNoRealign.ini b/settings/SingleSampleNoRealign.ini new file mode 100644 index 0000000..d606a68 --- /dev/null +++ b/settings/SingleSampleNoRealign.ini @@ -0,0 +1,17 @@ +INIFILE settings/include/settings.ini + +MAPPING yes +INDEL_REALIGNMENT no + +POSTSTATS yes +DAMAGE_ESTIMATE yes + +GERMLINE_CALLING yes + +STRELKA no +AMBER no +COBALT no +PURPLE no +GRIDSS no + +HEALTHCHECK yes \ No newline at end of file