From 5d0b877f5468f4c12de02d5e4098c201d96b4dfe Mon Sep 17 00:00:00 2001 From: Korneel Duyvesteyn Date: Thu, 24 May 2018 13:48:26 +0200 Subject: [PATCH] Fix formatting --- bin/create_config.pl | 8 ++++---- lib/HMF/Pipeline/Functions/Validate.pm | 1 + 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/bin/create_config.pl b/bin/create_config.pl index e0967d3..8d356a3 100755 --- a/bin/create_config.pl +++ b/bin/create_config.pl @@ -90,10 +90,10 @@ sub getIniFiles { my ($iniDir) = @_; -d $iniDir or die "Can't get INI files from $iniDir: $!"; - my @iniFiles = File::Find::Rule->file() - ->name("*.ini") - ->maxdepth(1) - ->in($iniDir); + my @iniFiles = File::Find::Rule->file() # + ->name("*.ini") # + ->maxdepth(1) # + ->in($iniDir); # return \@iniFiles; } \ No newline at end of file diff --git a/lib/HMF/Pipeline/Functions/Validate.pm b/lib/HMF/Pipeline/Functions/Validate.pm index 43155ca..4dd6161 100644 --- a/lib/HMF/Pipeline/Functions/Validate.pm +++ b/lib/HMF/Pipeline/Functions/Validate.pm @@ -211,6 +211,7 @@ sub configChecks { SAMBAMBA_PATH => \&missing_directory, MAPPING_THREADS => \&key_not_present, BAM_SLICER_PATH => \&missing_directory, + PRESTATS => if_enabled({ FASTQC_PATH => \&missing_directory, PRESTATS_THREADS => \&key_not_present,