revised the filters arguments

Author: Masoud

config.json

@@ -11,21 +11,21 @@
 
 		"normalize scores":			"true",
 		"emit scores":				"false",
-		"no out files":				"true",
+		"no out files":				"false",
 		"max decision":				-1
 	},
 
 	"policies": [
-		["OneNo",					"off"],
-		["TwentyNo",				"on"],
+		["OneNo",					"on"],
+		["TwentyNo",				"off"],
 		["MajorityVoting",			"off"]
 	],
 
 	"filters": [
-		["SampleFilter",					"off"],
+		["SampleFilter",					"on"],
 		["LengthStats",						"off"],
 
-		["LengthRatio",						"on"],
+		["LengthRatio",						"off"],
 		["ReverseLengthRatio",				"off"],
 		["WordRatio",						"off"],
 		["ReverseWordRatio",				"off"],

tm_manager.py

@@ -116,25 +116,29 @@ def load_options_from_config_file(self):
 		if 'output folder' not in self.options:
 			print "The 'output folder' is not indicated in config file. It is set to default('output')."
 			self.options['output folder'] = "output"
+
+		self.have_alignment = False
 		if 'align file' in self.options:
 			self.have_alignment = True
+
+		self.have_token = False
 		if 'token file' in self.options:
 			self.have_token = True
+
+		self.create_out_files = True
 		if 'no out files' in self.options:
 			if self.options['no out files'].lower() in ['true', 'yes', 'ok']:
 				self.create_out_files = False
-			else:
-				self.create_out_files = True
+
+		self.normalize_scores = False
 		if 'normalize scores' in self.options:
 			if self.options['normalize scores'].lower() in ['true', 'yes', 'ok']:
 				self.normalize_scores = True
-			else:
-				self.normalize_scores = False
+
+		self.have_scores = False
 		if 'emit scores' in self.options:
 			if self.options['emit scores'].lower() in ['true', 'yes', 'ok']:
 				self.have_scores = True
-			else:
-				self.have_scores = False
 
 		# making the output folder
 		path = os.getcwd() + "/" + self.options['output folder']