Name		Name	Last commit message	Last commit date
parent directory ..
jsons		jsons
losses		losses
models		models
optimizers		optimizers
runs		runs
utils		utils
README.md		README.md
dataset_TCIAcovid19_0.json		dataset_TCIAcovid19_0.json
launch_multi.sh		launch_multi.sh
launch_single.sh		launch_single.sh
main.py		main.py
requirements.txt		requirements.txt

README.md

use MONAI Core for Swin UNETR self-supervised pretraining for BTCV on HiperGator

This directory hosts scripts adapted from here.

Note

For testing purpose, only dataset TCIA Covid 19 is used.

How to run

To launch training/inference on a single GPU,

sbatch launch_single.sh

To launch training on multiple GPUs,

sbatch launch_multi.sh