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package.json
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package.json
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{
"name": "argo-clinical",
"version": "1.87.7",
"description": "Clinical submission system and repo.",
"scripts": {
"start": "npm run serve",
"stop": "pkill --signal 9 clinical",
"build": "npm run build-ts && npm run resources && npm run tslint",
"serve": "node dist/src/server.js",
"watch-node": "nodemon dist/src/server.js",
"test": "npm run unit-test && npm run int-test",
"int-test": "npm run build && DEBUG=testcontainers mocha --exit --timeout 60000 -r ts-node/register test/integration/**/*.spec.ts",
"unit-test": "npm run build && mocha --exit --timeout 5000 -r ts-node/register test/unit/**/*.spec.ts test/unit/**/**/*.spec.ts",
"perf-test": "npm run build && mocha --exit --timeout 60000 -r ts-node/register test/performance-test/**/*.spec.ts",
"build-ts": "tsc",
"watch-ts": "tsc -w",
"type-check": "tsc --noEmit",
"tslint": "tslint -c tslint.json -p tsconfig.json",
"debug": "npm run build && sleep 3 && npm run watch-debug",
"local": "npm run build && sleep 3 && npm run watch-local",
"resources": "copyfiles -u 1 src/resources/*.* dist/src",
"serve-debug": "nodemon --inspect dist/src/server.js",
"watch-debug": "LOG_LEVEL='debug' nodemon --delay 1000ms --inspect --watch 'src/**/*.ts' --watch 'src/resources/swagger.yaml' --ignore 'src/**/*.spec.ts' --exec node -r ts-node/register ./src/server.ts",
"watch-local": "nodemon --watch 'src/**/*.ts' --ignore 'src/**/*.spec.ts' --exec node -r ts-node/register ./src/server.ts",
"migrate-up": "migrate-mongo up",
"migrate-down": "migrate-mongo down",
"migrate-status": "migrate-mongo status",
"watch-tests": " mocha --exit --timeout 5000 -r ts-node/register test/unit/**/*.spec.ts --watch --watch-files test, ./src"
},
"repository": {
"type": "git",
"url": "git+https://github.com/icgc-argo/argo-clinical.git"
},
"author": "blabadi",
"license": "AGPL-3.0",
"bugs": {
"url": "https://github.com/icgc-argo/argo-clinical/issues"
},
"homepage": "https://github.com/icgc-argo/argo-clinical#readme",
"devDependencies": {
"@swc/core": "^1.3.32",
"@swc/helpers": "^0.4.14",
"@testcontainers/mongodb": "^10.14.0",
"@testcontainers/mysql": "^10.13.2",
"@types/adm-zip": "^0.4.33",
"@types/async": "^3.0.0",
"@types/bcrypt-nodejs": "^0.0.30",
"@types/bluebird": "^3.5.27",
"@types/body-parser": "^1.17.0",
"@types/chai": "^4.2.11",
"@types/chai-http": "^4.2.0",
"@types/compression": "^0.0.36",
"@types/connect-mongo": "^0.0.42",
"@types/deep-equal-in-any-order": "^1.0.1",
"@types/deep-freeze": "^0.1.1",
"@types/dockerode": "^2.5.20",
"@types/dotenv": "^6.1.1",
"@types/errorhandler": "^0.0.32",
"@types/express": "4.17.0",
"@types/express-serve-static-core": "4.16.7",
"@types/jsonwebtoken": "^8.3.2",
"@types/lodash": "^4.14.134",
"@types/migrate-mongo": "^7.0.0",
"@types/mocha": "^9.1.1",
"@types/mongodb": "^3.1.28",
"@types/mongoose": "^5.11.97",
"@types/mongoose-sequence": "^3.0.3",
"@types/morgan": "^1.7.35",
"@types/multer": "^1.3.7",
"@types/node": "^12.0.10",
"@types/node-fetch": "^2.5.0",
"@types/node-vault": "^0.9.0",
"@types/nodemailer": "^6.2.0",
"@types/response-time": "^2.3.4",
"@types/shelljs": "^0.8.5",
"@types/sinon": "^7.0.13",
"@types/superagent": "^4.1.3",
"@types/swagger-ui-express": "^3.0.1",
"@types/uuid": "^8.3.4",
"@types/yamljs": "^0.2.30",
"chai": "^4.2.0",
"chai-exclude": "^2.0.2",
"chai-http": "^4.3.0",
"concurrently": "^7.0.0",
"copyfiles": "^2.4.1",
"husky": "^3.0.0",
"minimist": "^1.2.2",
"mocha": "^9.2.0",
"nodemon": "^3.1.7",
"prettier": "^1.19.1",
"pretty-quick": "^1.11.1",
"regenerator-runtime": "^0.13.11",
"shelljs": "^0.8.5",
"sinon": "^7.3.2",
"testcontainers": "10.13",
"ts-node": "^10.9.1",
"tslint": "^5.20.1",
"typescript": "^5.0.0"
},
"dependencies": {
"@apollo/server": "^4.11.0",
"@apollo/subgraph": "2.5.2",
"@icgc-argo/ego-token-utils": "^8.5.0",
"@overturebio-stack/lectern-client": "^1.5.0",
"@types/mongoose-paginate-v2": "^1.3.11",
"adm-zip": "^0.4.16",
"apollo-server-core": "^3.12.0",
"async": "^3.0.1",
"bcrypt-nodejs": "^0.0.3",
"bluebird": "^3.5.5",
"body-parser": "^1.19.0",
"cd": "^0.3.3",
"compression": "^1.7.4",
"connect-mongo": "^3.0.0",
"deep-equal-in-any-order": "^1.0.21",
"deep-freeze": "^0.0.1",
"dotenv": "^8.0.0",
"errorhandler": "^1.5.1",
"express": "^4.21.0",
"express-flash": "0.0.2",
"express-session": "^1.16.2",
"express-validator": "^6.14.0",
"ini": ">=1.3.6",
"jsonwebtoken": "^9.0.2",
"kafkajs": "^1.12.0",
"kind-of": "^6.0.3",
"lodash": "^4.17.21",
"migrate-mongo": "^8.2.3",
"mock-http-server": "^1.4.1",
"mongoose": "^5.13.14",
"mongoose-paginate-v2": "^1.6.3",
"mongoose-sequence": "^5.2.2",
"morgan": "^1.10.0",
"mquery": ">=3.2.3",
"multer": "^1.4.5-lts.1",
"mysql2": "^3.11.3",
"node-fetch": "^2.6.7",
"node-vault": "^0.10.2",
"node-worker-threads-pool": "^1.2.2",
"nodemailer": "^6.9.15",
"promise-tools": "^2.1.0",
"response-time": "^2.3.2",
"swagger-ui-express": "^4.3.0",
"winston": "^3.2.1",
"yamljs": "^0.3.0",
"zod": "^3.21.4"
},
"husky": {
"hooks": {
"pre-commit": "pretty-quick --staged",
"pre-push": "npm run tslint"
}
}
}