Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

🐛 Truncated records turned by multiple endpoints #1219

Open
edsu7 opened this issue Nov 19, 2024 · 0 comments
Open

🐛 Truncated records turned by multiple endpoints #1219

edsu7 opened this issue Nov 19, 2024 · 0 comments
Assignees
Labels
bug Something isn't working

Comments

@edsu7
Copy link

edsu7 commented Nov 19, 2024

Describe the bug

retrieving data for MONSTAR-JP returns truncated primary_diagnosis TSV

Using endpoints:

  • post clinical/program/{programId}/clinical/tsv
  • get clinical/program/{programId}/tsv/all

From portal:

  • download all clinical data from dashboard
  • download all clinical data or download primary diagnosis data from submitted data

image

Only bottom row is affected. Record is MS0230002/DO256474/MS0230002-P1

Steps to reproduce the behaviour:

  • Using post clinical/program/{programId}/clinical/tsv
    • program : MONSTAR-JP
    • query body:
{
  "completionState": "all",
  "entityTypes": ["primaryDiagnoses"],
  "donorIds": [],
  "submitterDonorIds": []
}
  • tail primary_diagnosis.tsv

image

Expected behaviour

Record to be complete e.g.:

256473 MONSTAR-JP DONOR-ID1 PRIMARY_DIAGNOSIS-ID1
256474 MONSTAR-JP DONOR-ID2 PRIMARY_DIAGNOSIS-ID2
@edsu7 edsu7 added the bug Something isn't working label Nov 19, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

5 participants