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config.yaml
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# File paths
- data:
rawFilePath: data/raw/
intFilePath: data/interim/
proFilePath: data/processed/
extFilePath: data/external/
outPath: output/
outPathScratch: scratch/
# PDB data
- pdb:
rawFilePath: pdb/raw/
intFilePath: pdb/interim/
proFilePath: pdb/processed/
extFilePath: pdb/external/
id: 3r6s
- viz:
default:
xtick.labelsize: 20
ytick.labelsize: 20
font.size: 20
figure.autolayout: False
figure.figsize: 12,6
figure.dpi: 300
axes.titlesize : 22
axes.labelsize : 20
lines.linewidth : 2
lines.markersize : 6
legend.fontsize: 16
mathtext.fontset: stix
font.family : STIXGeneral
legend.frameon : False
jupyter:
xtick.labelsize: 13
ytick.labelsize: 13
font.size: 14
figure.autolayout: False
figure.figsize: 6,3
figure.dpi: 300
axes.titlesize : 16
axes.labelsize : 13
lines.linewidth : 1
lines.markersize : 5
legend.fontsize: 12
mathtext.fontset: stix
font.family : STIXGeneral
legend.frameon : False
figure.titlesize : 25
nature:
xtick.labelsize: 5
ytick.labelsize: 5
font.size: 6
figure.autolayout: False
figure.figsize: 7.2,3.6
figure.dpi: 300
axes.titlesize : 7
axes.labelsize : 6
lines.linewidth : 0.5
lines.markersize : 0.5
legend.fontsize: 6
mathtext.fontset: stix
font.family : STIXGeneral
legend.frameon : False
figure.titlesize : 7
patch.linewidth : 0.5
# Nature figure guide
#
# Text size
# Min: 5 pt
# Max: 7 pt
#
# Figure width
# Single column: 89 mm (3.50 in)
# Double column: 183 mm (7.20 in)
# Full depth: 247 mm (9.72 in)
#
# Line weights
# Min: 0.25 pt
# Max: 1 pt
#
# Reference: https://www.nature.com/nature/for-authors/final-submission
# PNAS standard figure width size
# Small: 87 mm (3.42 in)
# Medium: 114 mm (7.20 in)
# Large: 178 mm (7.00 in)
#
# Reference: https://www.pnas.org/authors/submitting-your-manuscript#manuscript-formatting-guidelines
- colors:
black: 0,0,0
orange: 230,159,0
sky_blue: 86,180,233
bluish_green: 0,158,115
yellow: 240,228,66
blue: 0,114,178
vermillion: 213,94,0
reddish_purple: 204,121,167
# Reference
# Wong, B., 2011. Points of view: Color blindness.
# Convert to hex
# "#{:02x}{:02x}{:02x}".format(0, 128, 64)
# "#008040"