From b21443001dbde26154166fd24fd738461f7a06e8 Mon Sep 17 00:00:00 2001
From: Michael Yourshaw <myourshaw@ucla.edu>
Date: Fri, 19 Dec 2014 15:21:23 -0800
Subject: [PATCH 1/2] ID as semicolon-separated list

---
 .idea/.name                     |   1 +
 .idea/PyVCF.iml                 |   8 +
 .idea/encodings.xml             |   4 +
 .idea/misc.xml                  |   4 +
 .idea/modules.xml               |   8 +
 .idea/scopes/scope_settings.xml |   5 +
 .idea/vcs.xml                   |   6 +
 .idea/workspace.xml             | 394 ++++++++++++++++++++++++++++++++
 8 files changed, 430 insertions(+)
 create mode 100644 .idea/.name
 create mode 100644 .idea/PyVCF.iml
 create mode 100644 .idea/encodings.xml
 create mode 100644 .idea/misc.xml
 create mode 100644 .idea/modules.xml
 create mode 100644 .idea/scopes/scope_settings.xml
 create mode 100644 .idea/vcs.xml
 create mode 100644 .idea/workspace.xml

diff --git a/.idea/.name b/.idea/.name
new file mode 100644
index 0000000..2d5903e
--- /dev/null
+++ b/.idea/.name
@@ -0,0 +1 @@
+PyVCF
\ No newline at end of file
diff --git a/.idea/PyVCF.iml b/.idea/PyVCF.iml
new file mode 100644
index 0000000..d0876a7
--- /dev/null
+++ b/.idea/PyVCF.iml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$" />
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>
\ No newline at end of file
diff --git a/.idea/encodings.xml b/.idea/encodings.xml
new file mode 100644
index 0000000..d821048
--- /dev/null
+++ b/.idea/encodings.xml
@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="Encoding" useUTFGuessing="true" native2AsciiForPropertiesFiles="false" />
+</project>
\ No newline at end of file
diff --git a/.idea/misc.xml b/.idea/misc.xml
new file mode 100644
index 0000000..9a2ead4
--- /dev/null
+++ b/.idea/misc.xml
@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 2.7.8 (/usr/local/Cellar/python/2.7.8_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7)" project-jdk-type="Python SDK" />
+</project>
\ No newline at end of file
diff --git a/.idea/modules.xml b/.idea/modules.xml
new file mode 100644
index 0000000..2eaa94e
--- /dev/null
+++ b/.idea/modules.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/PyVCF.iml" filepath="$PROJECT_DIR$/.idea/PyVCF.iml" />
+    </modules>
+  </component>
+</project>
\ No newline at end of file
diff --git a/.idea/scopes/scope_settings.xml b/.idea/scopes/scope_settings.xml
new file mode 100644
index 0000000..922003b
--- /dev/null
+++ b/.idea/scopes/scope_settings.xml
@@ -0,0 +1,5 @@
+<component name="DependencyValidationManager">
+  <state>
+    <option name="SKIP_IMPORT_STATEMENTS" value="false" />
+  </state>
+</component>
\ No newline at end of file
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
new file mode 100644
index 0000000..94a25f7
--- /dev/null
+++ b/.idea/vcs.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>
\ No newline at end of file
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
new file mode 100644
index 0000000..079bde6
--- /dev/null
+++ b/.idea/workspace.xml
@@ -0,0 +1,394 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ChangeListManager">
+    <list default="true" id="49ee355b-6976-4026-9856-760598f0057f" name="Default" comment="">
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/PyVCF.iml" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/encodings.xml" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/misc.xml" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/modules.xml" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/scopes/scope_settings.xml" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/vcs.xml" />
+    </list>
+    <ignored path="PyVCF.iws" />
+    <ignored path=".idea/workspace.xml" />
+    <ignored path=".idea/dataSources.local.xml" />
+    <option name="EXCLUDED_CONVERTED_TO_IGNORED" value="true" />
+    <option name="TRACKING_ENABLED" value="true" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="ChangesViewManager" flattened_view="true" show_ignored="false" />
+  <component name="CreatePatchCommitExecutor">
+    <option name="PATCH_PATH" value="" />
+  </component>
+  <component name="DaemonCodeAnalyzer">
+    <disable_hints />
+  </component>
+  <component name="ExecutionTargetManager" SELECTED_TARGET="default_target" />
+  <component name="FavoritesManager">
+    <favorites_list name="PyVCF" />
+  </component>
+  <component name="FileEditorManager">
+    <leaf>
+      <file leaf-file-name="parser.py" pinned="false" current-in-tab="true">
+        <entry file="file://$PROJECT_DIR$/vcf/parser.py">
+          <provider selected="true" editor-type-id="text-editor">
+            <state vertical-scroll-proportion="0.3820598" vertical-offset="7950" max-vertical-offset="11565">
+              <caret line="553" column="30" selection-start-line="553" selection-start-column="30" selection-end-line="553" selection-end-column="30" />
+              <folding>
+                <element signature="e#0#13#0" expanded="true" />
+              </folding>
+            </state>
+          </provider>
+        </entry>
+      </file>
+    </leaf>
+  </component>
+  <component name="Git.Settings">
+    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
+  </component>
+  <component name="IdeDocumentHistory">
+    <option name="CHANGED_PATHS">
+      <list>
+        <option value="$PROJECT_DIR$/vcf/parser.py" />
+      </list>
+    </option>
+  </component>
+  <component name="JsGulpfileManager">
+    <detection-done>true</detection-done>
+  </component>
+  <component name="ProjectFrameBounds">
+    <option name="x" value="122" />
+    <option name="y" value="143" />
+    <option name="width" value="1400" />
+    <option name="height" value="1000" />
+  </component>
+  <component name="ProjectLevelVcsManager" settingsEditedManually="false">
+    <OptionsSetting value="true" id="Add" />
+    <OptionsSetting value="true" id="Remove" />
+    <OptionsSetting value="true" id="Checkout" />
+    <OptionsSetting value="true" id="Update" />
+    <OptionsSetting value="true" id="Status" />
+    <OptionsSetting value="true" id="Edit" />
+    <ConfirmationsSetting value="0" id="Add" />
+    <ConfirmationsSetting value="0" id="Remove" />
+  </component>
+  <component name="ProjectView">
+    <navigator currentView="ProjectPane" proportions="" version="1">
+      <flattenPackages />
+      <showMembers />
+      <showModules />
+      <showLibraryContents />
+      <hideEmptyPackages />
+      <abbreviatePackageNames />
+      <autoscrollToSource />
+      <autoscrollFromSource />
+      <sortByType />
+    </navigator>
+    <panes>
+      <pane id="ProjectPane">
+        <subPane>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="PyVCF" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+          </PATH>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="PyVCF" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="PyVCF" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+          </PATH>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="PyVCF" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="PyVCF" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="vcf" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+          </PATH>
+        </subPane>
+      </pane>
+      <pane id="Scope" />
+    </panes>
+  </component>
+  <component name="PropertiesComponent">
+    <property name="WebServerToolWindowFactoryState" value="false" />
+  </component>
+  <component name="RunManager">
+    <configuration default="true" type="DjangoTestsConfigurationType" factoryName="Django tests">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs>
+        <env name="PYTHONUNBUFFERED" value="1" />
+      </envs>
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="TARGET" value="" />
+      <option name="SETTINGS_FILE" value="" />
+      <option name="CUSTOM_SETTINGS" value="false" />
+      <option name="USE_OPTIONS" value="false" />
+      <option name="OPTIONS" value="" />
+      <method />
+    </configuration>
+    <configuration default="true" type="tests" factoryName="py.test">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="FOLDER_NAME" value="" />
+      <option name="TEST_TYPE" value="TEST_SCRIPT" />
+      <option name="PATTERN" value="" />
+      <option name="USE_PATTERN" value="false" />
+      <option name="testToRun" value="" />
+      <option name="keywords" value="" />
+      <option name="params" value="" />
+      <option name="USE_PARAM" value="false" />
+      <option name="USE_KEYWORD" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="tests" factoryName="Nosetests">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="FOLDER_NAME" value="" />
+      <option name="TEST_TYPE" value="TEST_SCRIPT" />
+      <option name="PATTERN" value="" />
+      <option name="USE_PATTERN" value="false" />
+      <option name="PARAMS" value="" />
+      <option name="USE_PARAM" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="PythonConfigurationType" factoryName="Python">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs>
+        <env name="PYTHONUNBUFFERED" value="1" />
+      </envs>
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="PARAMETERS" value="" />
+      <option name="SHOW_COMMAND_LINE" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="JavascriptDebugType" factoryName="JavaScript Debug">
+      <method />
+    </configuration>
+    <configuration default="true" type="tests" factoryName="Unittests">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="FOLDER_NAME" value="" />
+      <option name="TEST_TYPE" value="TEST_SCRIPT" />
+      <option name="PATTERN" value="" />
+      <option name="USE_PATTERN" value="false" />
+      <option name="PUREUNITTEST" value="true" />
+      <option name="PARAMS" value="" />
+      <option name="USE_PARAM" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="PyBehaveRunConfigurationType" factoryName="Behave">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="ADDITIONAL_ARGS" value="" />
+      <method />
+    </configuration>
+    <configuration default="true" type="tests" factoryName="Doctests">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="FOLDER_NAME" value="" />
+      <option name="TEST_TYPE" value="TEST_SCRIPT" />
+      <option name="PATTERN" value="" />
+      <option name="USE_PATTERN" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="js.build_tools.gulp" factoryName="Gulp.js">
+      <method />
+    </configuration>
+    <configuration default="true" type="PyLettuceRunConfigurationType" factoryName="Lettuce">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="ADDITIONAL_ARGS" value="" />
+      <method />
+    </configuration>
+    <configuration default="true" type="tests" factoryName="Attests">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs />
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="IS_MODULE_SDK" value="false" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <module name="PyVCF" />
+      <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="FOLDER_NAME" value="" />
+      <option name="TEST_TYPE" value="TEST_SCRIPT" />
+      <option name="PATTERN" value="" />
+      <option name="USE_PATTERN" value="false" />
+      <method />
+    </configuration>
+    <list size="0" />
+  </component>
+  <component name="ShelveChangesManager" show_recycled="false" />
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="49ee355b-6976-4026-9856-760598f0057f" name="Default" comment="" />
+      <created>1419029795149</created>
+      <option name="number" value="Default" />
+      <updated>1419029795149</updated>
+    </task>
+    <task id="LOCAL-00001" summary="change ID from str to list&#10;ID - identifier: Semi-colon separated list of unique identifiers where available. If this is a dbSNP variant it is encouraged to use the rs number(s). No identifier should be present in more than one data record. If there is no identifier available, then the missing value should be used. (String, no white-space or semi-colons permitted)">
+      <created>1419029973005</created>
+      <option name="number" value="00001" />
+      <option name="project" value="LOCAL" />
+      <updated>1419029973005</updated>
+    </task>
+    <option name="localTasksCounter" value="2" />
+    <servers />
+  </component>
+  <component name="ToolWindowManager">
+    <frame x="122" y="143" width="1400" height="1000" extended-state="0" />
+    <editor active="false" />
+    <layout>
+      <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Terminal" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
+      <window_info id="Database" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Application Servers" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Project" active="true" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.25" sideWeight="0.5" order="0" side_tool="false" content_ui="combo" />
+      <window_info id="Python Console" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="true" content_ui="tabs" />
+      <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="true" content_ui="tabs" />
+      <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
+      <window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
+      <window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
+      <window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="SLIDING" type="SLIDING" visible="false" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
+      <window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
+      <window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
+      <window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
+    </layout>
+  </component>
+  <component name="Vcs.Log.UiProperties">
+    <option name="RECENTLY_FILTERED_USER_GROUPS">
+      <collection />
+    </option>
+    <option name="RECENTLY_FILTERED_BRANCH_GROUPS">
+      <collection />
+    </option>
+  </component>
+  <component name="VcsContentAnnotationSettings">
+    <option name="myLimit" value="2678400000" />
+  </component>
+  <component name="VcsManagerConfiguration">
+    <option name="myTodoPanelSettings">
+      <TodoPanelSettings />
+    </option>
+    <MESSAGE value="change ID from str to list&#10;ID - identifier: Semi-colon separated list of unique identifiers where available. If this is a dbSNP variant it is encouraged to use the rs number(s). No identifier should be present in more than one data record. If there is no identifier available, then the missing value should be used. (String, no white-space or semi-colons permitted)" />
+    <option name="LAST_COMMIT_MESSAGE" value="change ID from str to list&#10;ID - identifier: Semi-colon separated list of unique identifiers where available. If this is a dbSNP variant it is encouraged to use the rs number(s). No identifier should be present in more than one data record. If there is no identifier available, then the missing value should be used. (String, no white-space or semi-colons permitted)" />
+  </component>
+  <component name="XDebuggerManager">
+    <breakpoint-manager />
+    <watches-manager />
+  </component>
+  <component name="editorHistoryManager">
+    <entry file="file://$PROJECT_DIR$/vcf/parser.py">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.3820598" vertical-offset="7950" max-vertical-offset="11565">
+          <caret line="553" column="30" selection-start-line="553" selection-start-column="30" selection-end-line="553" selection-end-column="30" />
+          <folding>
+            <element signature="e#0#13#0" expanded="true" />
+          </folding>
+        </state>
+      </provider>
+    </entry>
+  </component>
+</project>
\ No newline at end of file

From b5595f0f018a827c6ddf286af20f17b18e394d8b Mon Sep 17 00:00:00 2001
From: Michael Yourshaw <myourshaw@ucla.edu>
Date: Fri, 19 Dec 2014 15:22:48 -0800
Subject: [PATCH 2/2] change ID from str to list ID - identifier: Semi-colon
 separated list of unique identifiers where available. If this is a dbSNP
 variant it is encouraged to use the rs number(s). No identifier should be
 present in more than one data record. If there is no identifier available,
 then the missing value should be used. (String, no white-space or semi-colons
 permitted)

---
 vcf/parser.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/vcf/parser.py b/vcf/parser.py
index 1f72b64..7f2eee7 100644
--- a/vcf/parser.py
+++ b/vcf/parser.py
@@ -543,7 +543,7 @@ def next(self):
         pos = int(row[1])
 
         if row[2] != '.':
-            ID = row[2]
+            ID = row[2].split(';')
         else:
             ID = None