setup.py

from setuptools import dist, find_packages


def pre_install_numpy():
    try:
        import numpy # noqa
    except ImportError:
        print('Installing numpy')
        numpy_version = dist.Distribution().fetch_build_eggs(['numpy'])[0].version
        print(f'Pre-installed numpy {numpy_version}')


pre_install_numpy()
from numpy.distutils.core import Extension, setup

import os
import sys
from configparser import ConfigParser


def gen_data_files(*dirs):
    """Creates the list of files (not necessarily python files) that need to be
    installed together with the rest of stuff"""
    results = []
    exclude = [".DS_Store", "__pycache__", "egg", ".git"]
    for src_dir in dirs:
        for root, dirs, files in os.walk(src_dir):
            if not any(sub in root for sub in exclude):
                results.append(
                    (root, [os.path.join(root, f) for f in files if f not in exclude])
                )
    return results


here = os.path.abspath(os.path.dirname(__file__))
default_config = os.path.join(here, "solcore", "solcore_config.txt")
config = ConfigParser()
config.read([default_config])

# We give the option of compiling - and installing - the extension modules
if (("--with_pdd" in sys.argv) or
        (('SOLCORE_WITH_PDD' in os.environ) and
         (os.environ['SOLCORE_WITH_PDD'] == "1"))):
    sources = os.path.join("solcore", "poisson_drift_diffusion",
                           "DDmodel-current.f95")
    ext = [
        Extension(
            name="solcore.poisson_drift_diffusion.ddModel",
            sources=[sources],
            f2py_options=["--quiet"],
            extra_link_args=["-static", "-static-libgfortran", "-static-libgcc"] if sys.platform == "win32" else None
        )
    ]
    if "--with_pdd" in sys.argv:
        sys.argv.remove("--with_pdd")
else:
    ext = []

# Option for updating the manifest
if "update_manifest" in sys.argv:
    # Update the MANIFEST.in file with all the data from within solcore
    include = "solcore"
    exclude = ["__pycache__", "egg", "darwin", "cpython"]
    with open("MANIFEST.in", "w", encoding="utf-8") as f:
        for root, dir, files in os.walk("."):
            if not any(sub in root for sub in exclude) and root[2:9] == include:
                try:
                    files.remove(".DS_Store")
                except ValueError:
                    pass
                for file in files:
                    if any(sub in file for sub in exclude):
                        continue
                    include_line = "include " + os.path.join(root[2:], file) + "\n"
                    f.write(include_line)

    sys.exit()

# Get the long description from the README file
with open(os.path.join(here, "README.md"), encoding="utf-8") as f:
    long_description = f.read()

install_requires = [
    "numpy",
    "matplotlib",
    "scipy",
    "tmm",
    "natsort",
    "regex",
    "cycler",
    "pyyaml",
    "yabox",
    "joblib",
]
tests_require = [
    "pytest",
    "pytest-cov",
    "pytest-mock",
    "nbconvert",
    "nbformat",
    "pytest-rerunfailures",
    "pytest-xdist",
]
docs_require = ["Sphinx", "recommonmark"]
extras_require = {
    "dev": tests_require + docs_require + ["pre-commit"],
    "docs": docs_require,
    "test": tests_require,
}

setup(
    name="solcore",
    version=config.get("Configuration", "version"),
    description="Python-based solar cell simulator",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/qpv-research-group/solcore5",
    download_url="https://github.com/qpv-research-group/solcore5/archive/v{}.tar.gz".format(
        config.get("Configuration", "version")
    ),
    project_urls={
        "Documentation": "http://solcore5.readthedocs.io",
        "Solcore research paper": "https://doi.org/10.1007/s10825-018-1171-3",
    },
    author="The Quantum Photovoltaics Group",
    author_email="d.alonso-alvarez@imperial.ac.uk",
    license="GNU LGPL",
    python_requires=">=3.7",
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved",
        "License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)",
        "Natural Language :: English",
        "Operating System :: OS Independent",
        "Programming Language :: Python",
        "Programming Language :: Python :: 3",
        "Topic :: Scientific/Engineering",
        "Topic :: Scientific/Engineering :: Physics",
    ],
    ext_modules=ext,
    keywords="photovoltaics modelling physics",
    packages=find_packages(exclude=[]),
    package_data={"": ["*.*"]},
    data_files=gen_data_files("solcore"),
    include_package_data=True,
    setup_requires="pytest-runner",
    install_requires=install_requires,
    tests_require=tests_require,
    extras_require=extras_require,
)