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runsub_popinfo.sh
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runsub_popinfo.sh
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echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr22.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr22.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr22.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr22.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr1.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr1.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr1.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr1.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr2.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr2.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr2.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr2.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr3.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr3.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr3.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr3.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr4.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr4.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr4.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr4.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr5.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr5.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr5.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr5.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr6.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr6.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr6.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr6.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr7.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr7.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr7.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr7.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr8.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr8.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr8.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr8.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr9.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr9.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr9.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr9.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr10.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr10.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr10.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr10.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr11.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr11.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr11.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr11.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr12.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr12.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr12.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr12.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr13.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr13.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr13.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr13.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr14.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr14.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr14.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr14.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr15.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr15.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr15.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr15.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr16.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr16.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr16.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr16.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr17.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr17.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr17.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr17.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr18.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr18.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr18.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr18.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr19.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr19.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr19.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr19.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr20.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr20.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr20.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr20.tsv" | qsub -cwd
echo "perl ~/bin/scripts4CGI/calc_popinfo.pl --dbnsfp /clusta/jxchong/dbNSFP/dbNSFP2.0b3_variant.chr21.bz2 --testvar /clusta/jxchong/CGI_WGS/testvar-2012-09-20/all.2012-09-20.testvar.chr21.tsv.bz2 --genelistvar /clusta/jxchong/CGI_WGS/genelistvar-2012-09-20/all.2012-09-20.genelistvar.chr21.tsv.bz2 --o /clustb/jxchong/CGI_WGS/all.2012-09-20.popinfo.chr21.tsv" | qsub -cwd