From 6564076e8742df7c6ed28fb690b5fda083bbde81 Mon Sep 17 00:00:00 2001 From: Keith Date: Tue, 11 Jun 2024 13:41:29 -0500 Subject: [PATCH] working on create analysis docs --- FinCatchAnalysis_3_CreateAnalysis.qmd | 36 +++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/FinCatchAnalysis_3_CreateAnalysis.qmd b/FinCatchAnalysis_3_CreateAnalysis.qmd index e462b4b..abc7c4f 100644 --- a/FinCatchAnalysis_3_CreateAnalysis.qmd +++ b/FinCatchAnalysis_3_CreateAnalysis.qmd @@ -20,6 +20,42 @@ Make sure to test each analysis function for: - Works for both grouped by survey and ungrouped analysis, if not grouped by survey in fc_data\$groupSurveys, surveyUid is set to "-1" during data download by the data object +### Flow and Critical Issues + +- Import Data + + - Make sure to use remove_nonCPUE_data as appropiate in get_data\_ functions + + ::: callout-important + use remove_nonCPUE_data=FALSE to get all data if appropriate, specify remove_nonCPUE_data=TRUE for readability (is default if not specified) + ::: + + - Check For Empty/Missing Stations using ??? function + +- Conduct Analysis + + - Expand to account for missing 0's using AddZerosForMissingSpecies() function + +- Finish Analysis + + - Label survey UIDs, sample UIDs, species, and methods + + - ::: callout-note + Useful Functions: + + fc_labeler_Survey + + fc_labeler_fishSample + + fc_labeler_wqSample + + fc_matchCodes + + fc_createCodeLabel + + fc_createCodeLabelReversed + ::: + ### Steps 1. Create new r file names fc_analysisName.R (Easiest To Copy Existing Analysis and Modify)