diff --git a/notebooks/fig1.ipynb b/notebooks/fig1.ipynb index 7003b10..40a9da9 100644 --- a/notebooks/fig1.ipynb +++ b/notebooks/fig1.ipynb @@ -56,7 +56,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "--2021-01-26 09:52:14-- ftp://ftp.microbio.me/emp/release1/otu_tables/deblur/emp_deblur_90bp.release1.biom\n", + "--2021-02-04 13:39:26-- ftp://ftp.microbio.me/emp/release1/otu_tables/deblur/emp_deblur_90bp.release1.biom\n", " => ‘fig1/input/EMP_tbl.biom’\n", "Resolving ftp.microbio.me (ftp.microbio.me)... 169.228.46.98\n", "Connecting to ftp.microbio.me (ftp.microbio.me)|169.228.46.98|:21... connected.\n", @@ -67,9 +67,9 @@ "==> PASV ... done. ==> RETR emp_deblur_90bp.release1.biom ... done.\n", "Length: 269396269 (257M) (unauthoritative)\n", "\n", - "emp_deblur_90bp.rel 100%[===================>] 256.92M 29.6MB/s in 18s \n", + "emp_deblur_90bp.rel 100%[===================>] 256.92M 12.8MB/s in 38s \n", "\n", - "2021-01-26 09:52:34 (14.0 MB/s) - ‘fig1/input/EMP_tbl.biom’ saved [269396269]\n", + "2021-02-04 13:40:05 (6.80 MB/s) - ‘fig1/input/EMP_tbl.biom’ saved [269396269]\n", "\n" ] } @@ -88,7 +88,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "--2021-01-26 09:52:34-- ftp://ftp.microbio.me/emp/release1/otu_info/deblur/emp90.5000_1000_rxbl_placement_pruned75.tog.tre\n", + "--2021-02-04 13:40:05-- ftp://ftp.microbio.me/emp/release1/otu_info/deblur/emp90.5000_1000_rxbl_placement_pruned75.tog.tre\n", " => ‘fig1/input/EMP_tree.tre’\n", "Resolving ftp.microbio.me (ftp.microbio.me)... 169.228.46.98\n", "Connecting to ftp.microbio.me (ftp.microbio.me)|169.228.46.98|:21... connected.\n", @@ -99,9 +99,9 @@ "==> PASV ... done. ==> RETR emp90.5000_1000_rxbl_placement_pruned75.tog.tre ... done.\n", "Length: 41472507 (40M) (unauthoritative)\n", "\n", - "emp90.5000_1000_rxb 100%[===================>] 39.55M 9.32MB/s in 8.0s \n", + "emp90.5000_1000_rxb 100%[===================>] 39.55M 7.95MB/s in 9.5s \n", "\n", - "2021-01-26 09:52:43 (4.95 MB/s) - ‘fig1/input/EMP_tree.tre’ saved [41472507]\n", + "2021-02-04 13:40:16 (4.17 MB/s) - ‘fig1/input/EMP_tree.tre’ saved [41472507]\n", "\n" ] } @@ -120,7 +120,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "--2021-01-26 09:52:43-- ftp://ftp.microbio.me/emp/release1/mapping_files/emp_qiime_mapping_release1.tsv\n", + "--2021-02-04 13:40:16-- ftp://ftp.microbio.me/emp/release1/mapping_files/emp_qiime_mapping_release1.tsv\n", " => ‘fig1/input/EMP_metadata.tsv’\n", "Resolving ftp.microbio.me (ftp.microbio.me)... 169.228.46.98\n", "Connecting to ftp.microbio.me (ftp.microbio.me)|169.228.46.98|:21... connected.\n", @@ -131,9 +131,9 @@ "==> PASV ... done. ==> RETR emp_qiime_mapping_release1.tsv ... done.\n", "Length: 21876184 (21M) (unauthoritative)\n", "\n", - "emp_qiime_mapping_r 100%[===================>] 20.86M 5.60MB/s in 6.1s \n", + "emp_qiime_mapping_r 100%[===================>] 20.86M 5.28MB/s in 6.2s \n", "\n", - "2021-01-26 09:52:50 (3.43 MB/s) - ‘fig1/input/EMP_metadata.tsv’ saved [21876184]\n", + "2021-02-04 13:40:23 (3.36 MB/s) - ‘fig1/input/EMP_metadata.tsv’ saved [21876184]\n", "\n" ] } diff --git a/notebooks/fig1/output/EMP_empire.qzv b/notebooks/fig1/output/EMP_empire.qzv index 71e42fb..833f93b 100644 Binary files a/notebooks/fig1/output/EMP_empire.qzv and b/notebooks/fig1/output/EMP_empire.qzv differ diff --git a/notebooks/fig1/output/ph_EMP_empress.qzv b/notebooks/fig1/output/ph_EMP_empress.qzv index 76795a3..c567ad4 100644 Binary files a/notebooks/fig1/output/ph_EMP_empress.qzv and b/notebooks/fig1/output/ph_EMP_empress.qzv differ