cluster.json

{
    "__default__": {
        "account": "larsms",
        "job-name": "10x",
        "time": "1:00:00",
        "ntasks": 1,
        "cpus-per-task": 1,
        "nodes": 1,
        "mem": "4G",
        "partition": "batch",
        "mail": "kwells4@stanford.edu",
        "type": "FAIL"
    },
    "mkfastq": {
        "job-name": "mkfastq",
        "time": "2:00:00",
        "cpus-per-task": 30,
        "mem": "24G",
        "type": "BEGIN,END,FAIL"
    },
    "count": {
        "job-name": "count",
        "time": "1-00:00:00",
        "cpus-per-task": 30,
        "mem": "100G",
        "type":"BEGIN,END,FAIL"
    },
    "final_analysis": {
        "job-name": "Rscript",
        "time": "06:00:00"
    },
    "combine_samples": {
        "job-name": "CCA",
        "mem":"24G",
        "time": "12:00:00"
    },
    "combined_analysis": {
        "job-name": "Rscript",
        "mem":"100G",
        "time": "06:00:00"
    },
    "subset_combined": {
        "job-name": "CCA",
        "mem": "24G",
        "time": "12:00:00"
    },
    "make_figures": {
        "job-name": "figures",
        "mem":"100G",
        "time": "06:00:00"
    }
}