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dbCAN_utils output problem #186

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Wqqqr224 opened this issue Aug 26, 2024 · 1 comment
Open

dbCAN_utils output problem #186

Wqqqr224 opened this issue Aug 26, 2024 · 1 comment
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@Wqqqr224
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I am trying to run dbCAN_utils for multiple MAGs using metadata_fil.txt, but it the output I am getting is single and it has been overwritten. I tried --output ${line}.out (also --outpubut its not working its keeps giving single outputs (overwritten).
for example
dbcan_utils fam_abund -bt ${line}.depth.txt -i ${line}.dbCAN -a TPM --output ${line}_fam_abund.out
but the outputs I am getting are without unique identities and that's why it's overwritten.
How do you get outputs with a unique identifier so it's not overwritten?

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@Wqqqr224 Wqqqr224 added the bug Something isn't working label Aug 26, 2024
@Xinpeng021001
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Hi, I suggest you rename the output file by command lines like using mv or rename to do that. We didn't provide a parameter to change the output file name.

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