Inquiry on error

[songmj86]

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Hi. I installed the dbcan via conda and encounted the issue "File not found: [Errno 2] No such file or directory: '/$Out/hmmer.out'". Do you have any idea how to resolve this issue? Thanks

Install

conda create -y -n dbcan python=3.8 ;
conda activate dbcan ;
conda install -y -n dbcan dbcan

DB construction

conda activate dbcan ; dbcan_build -h ;
Out="Path" ; mkdir -p $Out ;
dbcan_build --db-dir $Out --clean

Run (Input is protein faa file)

conda activate dbcan ;
DB="Path1" ;
In="Path2" ;
Out="Path3" ;
run_dbcan --db_dir $DB --dia_cpu 100 --hmm_cpu 100 --dbcan_thread 100 --tf_cpu 100 --stp_cpu 100 --out_dir $Out $In protein
conda deactivate ;

Result

1. DIAMOND start**********************

1. DIAMOND end************************

2. HMMER start**********************

2. HMMER end************************

3. dbCAN_sub start************************

total time: 202.39654803276062

3. dbCAN_sub end************************

File not found: [Errno 2] No such file or directory: '/$Out/hmmer.out'
Preparing overview table from hmmer, dbCAN_sub and diamond output...
Overview table complete. Saved as /$Out/overview.txt

Attachment is the computed results

Result.zip

Version information

No response