From 39014d335f12d90f949d58e543424ef55d1f5797 Mon Sep 17 00:00:00 2001 From: TeamSPoon Date: Thu, 4 Jan 2024 04:37:57 -0800 Subject: [PATCH] 12-15-want --- metta_vspace/gpt4-openai-api/.gitignore | 59 + .../gpt4-openai-api/gpt4_openai/__init__.py | 98 + .../gpt4-openai-api/gpt4_openai/driver.py | 649 + metta_vspace/gpt4-openai-api/readme.md | 110 + metta_vspace/gpt4-openai-api/setup.py | 35 + metta_vspace/gpt4-openai-api/test/.env-file | 3 + .../gpt4-openai-api/test/send_message.png | Bin 0 -> 137346 bytes metta_vspace/gpt4-openai-api/test/test.py | 11 + .../gpt4-openai-api/test/test_browsing.py | 13 + .../test/test_code_interpretter.py | 16 + .../test/test_continue_generating.py | 20 + .../gpt4-openai-api/test/test_dalle3.py | 19 + .../gpt4-openai-api/test/test_langchain.py | 21 + metta_vspace/pyswip-12-15/chars.data | 38781 +++++++++++++++ metta_vspace/pyswip-12-15/flybase_convert.pl | 10 + .../pyswip-12-15/flybase_induced_types.pl | 1659 + metta_vspace/pyswip-12-15/flybase_json.pl | 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Miscellaneous +*.log +*.bak +*.swp +*.swo +*.swn +*.sqlite3 +*.env +*.env.local +*.env.development +*.env.production + +build/ +dist/ +*.egg-info/ +.pypirc + +# OS generated files +.DS_Store +.DS_Store? +._* +.Spotlight-V100 +.Trashes +ehthumbs.db +Thumbs.db +desktop.ini + +.env \ No newline at end of file diff --git a/metta_vspace/gpt4-openai-api/gpt4_openai/__init__.py b/metta_vspace/gpt4-openai-api/gpt4_openai/__init__.py new file mode 100755 index 00000000..1c771529 --- /dev/null +++ b/metta_vspace/gpt4-openai-api/gpt4_openai/__init__.py @@ -0,0 +1,98 @@ +from typing import Optional, List, Mapping, Any +import traceback +from time import sleep +from typing import Dict, Callable +from langchain.llms.base import LLM +import requests +from .driver import ChatGptDriver + +class GPT4OpenAI(LLM): + + history_data: Optional[List] = [] + token : Optional[str] + chatbot : Optional[ChatGptDriver] = None + call : int = 0 + conversation : Optional[str] = "" + headless : bool = True + __file__ = __file__ + model: str = "gpt-4" + + #### WARNING : for each api call this library will create a new chat on chat.openai.com + @property + def _llm_type(self) -> str: + return "custom" + + def _create_chatbot(self): + if self.chatbot is None: + if self.token is None: + raise ValueError("Need a token , check https://chat.openai.com/api/auth/session for get your token") + else: + if self.conversation == "": + self.chatbot = ChatGptDriver(self.token, headless=self.headless, model=self.model) + elif self.conversation != "" : + self.chatbot = ChatGptDriver(self.token, headless=self.headless, model=self.model, conversation_id=self.conversation) + else: + raise ValueError("Something went wrong") + + def _call(self, prompt: str, stop: Optional[List[str]] = None) -> str: + if stop is not None: + pass + #raise ValueError("stop kwargs are not permitted.") + #token is a must check + self._create_chatbot() + + response = "" + # OpenAI: 50 requests / hour for each account + if self.call >= 45: + raise ValueError("You have reached the maximum number of requests per hour ! Help me to Improve. Abusing this tool is at your own risk") + else: + sleep(2) + try: + data = self.chatbot.chat(prompt) + except Exception as e: + self.chatbot.driver.save_screenshot("error.png") + sleep(1) + self.chatbot.driver.save_screenshot("error2.png") + print('Error:') + print(e) + print(traceback.print_exc()) + sleep(300) # So user can debug the issue + #print(data) + response = data["message"] + self.conversation = data["conversation_id"] + FullResponse = data + self.call += 1 + + #add to history + self.history_data.append({"prompt":prompt,"response":response}) + + return response + + @property + def _identifying_params(self) -> Mapping[str, Any]: + """Get the identifying parameters.""" + return {"model": self.model, "token": self.token} + + def generate_image(self, prompt: str, image_path: Optional[str] = None) -> bytes: + """ + Generate an image from a prompt. If image_path is passed, the image will be saved to that path. + + Return: + bytes: image bytes + """ + self._create_chatbot() + img_url = self.chatbot.generate_image(prompt) + # Download an image to a local file path + img_data = requests.get(img_url).content + + if image_path is not None: + with open(image_path, 'wb') as file: + file.write(img_data) + + return img_data + + def close(self): + """ + Close the Chrome browser + """ + self.chatbot.driver.quit() \ No newline at end of file diff --git a/metta_vspace/gpt4-openai-api/gpt4_openai/driver.py b/metta_vspace/gpt4-openai-api/gpt4_openai/driver.py new file mode 100755 index 00000000..b487458a --- /dev/null +++ b/metta_vspace/gpt4-openai-api/gpt4_openai/driver.py @@ -0,0 +1,649 @@ +from cProfile import label +from networkx import general_random_intersection_graph +from selenium.webdriver.support import expected_conditions as EC +from selenium.common import exceptions as SeleniumExceptions +from selenium.webdriver.support.ui import WebDriverWait +from selenium.webdriver.common.keys import Keys +from selenium.webdriver.common.by import By + +import undetected_chromedriver as uc +from markdownify import markdownify +from threading import Thread +import platform +import logging +import weakref +import json +import time +import re +import os +import random + +cf_challenge_form = (By.ID, 'challenge-form') + +chatgpt_textbox = (By.TAG_NAME, 'textarea') +chatgpt_streaming = (By.CLASS_NAME, 'result-streaming') +chatgpt_big_response = (By.XPATH, '//div[@class="flex-1 overflow-hidden"]//div[p]') +chatgpt_small_response = ( + By.XPATH, + '//div[starts-with(@class, "markdown prose w-full break-words")]', +) +chatgpt_alert = (By.XPATH, '//div[@role="alert"]') +chatgpt_dialog = (By.XPATH, '//div[@role="dialog"]') +chatgpt_intro = (By.ID, 'headlessui-portal-root') +chatgpt_login_btn = (By.XPATH, '//button[text()="Log in"]') +chatgpt_login_h1 = (By.XPATH, '//h1[text()="Welcome back"]') +chatgpt_logged_h1 = (By.XPATH, '//h1[text()="ChatGPT"]') + +chatgpt_new_chat = (By.LINK_TEXT, 'New chat') +chatgpt_clear_convo = (By.LINK_TEXT, 'Clear conversations') +chatgpt_confirm_clear_convo = (By.LINK_TEXT, 'Confirm clear conversations') +chatgpt_chats_list_first_node = ( + By.XPATH, + "//li[@class='relative z-[15]']//a", +) + +regenerate_response = (By.XPATH, "//*[.//div[contains(text(), 'Regenerate')]]") + +class ChatGptDriver: + ''' + An unofficial Python wrapper for OpenAI's ChatGPT API + ''' + + def __init__( + self, + session_token: str = None, + conversation_id: str = '', + auth_type: str = None, + email: str = None, + password: str = None, + login_cookies_path: str = '', + captcha_solver: str = 'pypasser', + solver_apikey: str = '', + model: str = 'gpt4', + proxy: str = None, + chrome_args: list = [], + moderation: bool = True, + verbose: bool = False, + headless: bool = True, + ): + ''' + Initialize the ChatGPT object\n + :param session_token: The session token to use for authentication + :param conversation_id: The conversation ID to use for the chat session + :param auth_type: The authentication type to use (`google`, `microsoft`, `openai`) + :param email: The email to use for authentication + :param password: The password to use for authentication + :param login_cookies_path: The path to the cookies file to use for authentication + :param captcha_solver: The captcha solver to use (`pypasser`, `2captcha`) + :param solver_apikey: The apikey of the captcha solver to use (if any) + :param proxy: The proxy to use for the browser (`https://ip:port`) + :param chrome_args: The arguments to pass to the browser + :param moderation: Whether to enable message moderation + :param verbose: Whether to enable verbose logging + :param headless: Whether to run the browser in headless mode + ''' + self.__init_logger(verbose) + + self.__session_token = session_token + self.__conversation_id = conversation_id + self.__auth_type = auth_type + self.__email = email + self.__password = password + self.__login_cookies_path = login_cookies_path + self.__captcha_solver = captcha_solver + self.__solver_apikey = solver_apikey + self.__proxy = proxy + self.__chrome_args = chrome_args + self.__moderation = moderation + self.__headless = headless + + self._model = model + self._chatgpt_chat_url = 'https://chat.openai.com' + + if not self.__session_token and ( + not self.__email or not self.__password or not self.__auth_type + ): + raise ValueError( + 'Please provide either a session token or login credentials' + ) + if self.__auth_type not in [None, 'google', 'microsoft', 'openai']: + raise ValueError('Invalid authentication type') + if self.__captcha_solver not in [None, 'pypasser', '2captcha']: + raise ValueError('Invalid captcha solver') + if self.__captcha_solver == '2captcha' and not self.__solver_apikey: + raise ValueError('Please provide a 2captcha apikey') + if self.__proxy and not re.findall( + r'(https?|socks(4|5)?):\/\/.+:\d{1,5}', self.__proxy + ): + raise ValueError('Invalid proxy format') + if self.__auth_type == 'openai' and self.__captcha_solver == 'pypasser': + try: + import ffmpeg_downloader as ffdl + except ModuleNotFoundError: + raise ValueError( + 'Please install ffmpeg_downloader, PyPasser, and pocketsphinx by running `pip install ffmpeg_downloader PyPasser pocketsphinx`' + ) + + ffmpeg_installed = bool(ffdl.ffmpeg_version) + self.logger.debug(f'ffmpeg installed: {ffmpeg_installed}') + if not ffmpeg_installed: + import subprocess + + subprocess.run(['ffdl', 'install']) + os.environ['PATH'] += os.pathsep + ffdl.ffmpeg_dir + + self.__init_browser() + weakref.finalize(self, self.__del__) + + def _get_url(self): + return f"{self._chatgpt_chat_url}/?model={self._model}" + + def __del__(self): + ''' + Close the browser and display + ''' + self.__is_active = False + if hasattr(self, 'driver'): + self.logger.debug('Closing browser...') + self.driver.quit() + if hasattr(self, 'display'): + self.logger.debug('Closing display...') + self.display.stop() + + def __init_logger(self, verbose: bool) -> None: + ''' + Initialize the logger\n + :param verbose: Whether to enable verbose logging + ''' + self.logger = logging.getLogger('pyChatGPT') + self.logger.setLevel(logging.DEBUG) + if verbose: + formatter = logging.Formatter('[%(funcName)s] %(message)s') + stream_handler = logging.StreamHandler() + stream_handler.setFormatter(formatter) + self.logger.addHandler(stream_handler) + + def __init_browser(self) -> None: + ''' + Initialize the browser + ''' + if platform.system() == 'Linux' and 'DISPLAY' not in os.environ: + self.logger.debug('Starting virtual display...') + try: + from pyvirtualdisplay import Display + + self.display = Display() + except ModuleNotFoundError: + raise ValueError( + 'Please install PyVirtualDisplay to start a virtual display by running `pip install PyVirtualDisplay`' + ) + except FileNotFoundError as e: + if 'No such file or directory: \'Xvfb\'' in str(e): + raise ValueError( + 'Please install Xvfb to start a virtual display by running `sudo apt install xvfb`' + ) + raise e + self.display.start() + + self.logger.debug('Initializing browser...') + options = uc.ChromeOptions() + if self.__proxy: + options.add_argument(f'--proxy-server={self.__proxy}') + for arg in self.__chrome_args: + options.add_argument(arg) + try: + self.driver = uc.Chrome(options=options, headless=self.__headless) + except TypeError as e: + if str(e) == 'expected str, bytes or os.PathLike object, not NoneType': + raise ValueError('Chrome installation not found') + raise e + + if self.__login_cookies_path and os.path.exists(self.__login_cookies_path): + self.logger.debug('Restoring cookies...') + try: + with open(self.__login_cookies_path, 'r', encoding='utf-8') as f: + cookies = json.load(f) + for cookie in cookies: + if cookie['name'] == '__Secure-next-auth.session-token': + self.__session_token = cookie['value'] + except json.decoder.JSONDecodeError: + self.logger.debug(f'Invalid cookies file: {self.__login_cookies_path}') + + if self.__session_token: + self.logger.debug('Restoring session_token...') + self.driver.execute_cdp_cmd( + 'Network.setCookie', + { + 'domain': 'chat.openai.com', + 'path': '/', + 'name': '__Secure-next-auth.session-token', + 'value': self.__session_token, + 'httpOnly': True, + 'secure': True, + }, + ) + + if not self.__moderation: + self.logger.debug('Blocking moderation...') + self.driver.execute_cdp_cmd( + 'Network.setBlockedURLs', + {'urls': ['https://chat.openai.com/backend-api/moderations']}, + ) + + self.logger.debug('Ensuring Cloudflare cookies...') + self.__ensure_cf() + + self.logger.debug('Opening chat page...') + self.driver.get(self._get_url()) + + # To avoid clicking on the "Get started" button + local_storage_data = { + 'oai/apps/hasSeenOnboarding/chat': '"2023-11-11"', + 'oai/apps/hasSeenGizmoOnboarding': 'true', + } + # Insert each key-value pair into local storage + for key, value in local_storage_data.items(): + # JavaScript to set the item in local storage + js_command = f"window.localStorage.setItem('{key}', '{value}');" + self.driver.execute_script(js_command) + + self.__check_blocking_elements() + + self.__is_active = True + Thread(target=self.__keep_alive, daemon=True).start() + + def __ensure_cf(self, retry: int = 3) -> None: + ''' + Ensure Cloudflare cookies are set\n + :param retry: Number of retries + ''' + self.logger.debug('Opening new tab...') + original_window = self.driver.current_window_handle + self.driver.switch_to.new_window('tab') + + self.logger.debug('Getting Cloudflare challenge...') + self.driver.get('https://chat.openai.com/api/auth/session') + try: + WebDriverWait(self.driver, 10).until_not( + EC.presence_of_element_located(cf_challenge_form) + ) + except SeleniumExceptions.TimeoutException: + self.logger.debug(f'Cloudflare challenge failed, retrying {retry}...') + self.driver.save_screenshot(f'cf_failed_{retry}.png') + if retry > 0: + self.logger.debug('Closing tab...') + self.driver.close() + self.driver.switch_to.window(original_window) + return self.__ensure_cf(retry - 1) + raise ValueError('Cloudflare challenge failed') + self.logger.debug('Cloudflare challenge passed') + + self.logger.debug('Validating authorization...') + response = self.driver.page_source + if response[0] != '{': + response = self.driver.find_element(By.TAG_NAME, 'pre').text + response = json.loads(response) + if (not response) or ( + 'error' in response and response['error'] == 'RefreshAccessTokenError' + ): + self.logger.debug('Authorization is invalid') + if not self.__auth_type: + raise ValueError('Invalid session token') + self.__login() + self.logger.debug('Authorization is valid') + + self.logger.debug('Closing tab...') + self.driver.close() + self.driver.switch_to.window(original_window) + + def __check_capacity(self, target_url: str): + ''' + Check if ChatGPT is at capacity\n + :param target_url: URL to retry if ChatGPT is at capacity + ''' + while True: + try: + self.logger.debug('Checking if ChatGPT is at capacity...') + WebDriverWait(self.driver, 3).until( + EC.presence_of_element_located( + (By.XPATH, '//div[text()="ChatGPT is at capacity right now"]') + ) + ) + self.logger.debug('ChatGPT is at capacity, retrying...') + self.driver.get(target_url) + except SeleniumExceptions.TimeoutException: + self.logger.debug('ChatGPT is not at capacity') + break + + def __login(self) -> None: + ''' + Login to ChatGPT + ''' + self.logger.debug('Opening new tab...') + original_window = self.driver.current_window_handle + self.driver.switch_to.new_window('tab') + + self.logger.debug('Opening login page...') + self.driver.get('https://chat.openai.com/auth/login') + self.__check_capacity('https://chat.openai.com/auth/login') + + self.logger.debug('Clicking login button...') + WebDriverWait(self.driver, 5).until( + EC.element_to_be_clickable(chatgpt_login_btn) + ).click() + + WebDriverWait(self.driver, 5).until( + EC.presence_of_element_located(chatgpt_login_h1) + ) + + from . import Auth0 + + Auth0.login(self) + + self.logger.debug('Checking if login was successful') + try: + WebDriverWait(self.driver, 5).until( + EC.presence_of_element_located(chatgpt_logged_h1) + ) + if self.__login_cookies_path: + self.logger.debug('Saving cookies...') + with open(self.__login_cookies_path, 'w', encoding='utf-8') as f: + json.dump( + [ + i + for i in self.driver.get_cookies() + if i['name'] == '__Secure-next-auth.session-token' + ], + f, + ) + except SeleniumExceptions.TimeoutException as e: + self.driver.save_screenshot('login_failed.png') + raise e + + self.logger.debug('Closing tab...') + self.driver.close() + self.driver.switch_to.window(original_window) + + def __keep_alive(self) -> None: + ''' + Keep the session alive by updating the local storage\n + Credit to Rawa#8132 in the ChatGPT Hacking Discord server + ''' + while self.__is_active: + self.logger.debug('Updating session...') + payload = ( + '{"event":"session","data":{"trigger":"getSession"},"timestamp":%d}' + % int(time.time()) + ) + try: + self.driver.execute_script( + 'window.localStorage.setItem("nextauth.message", arguments[0])', + payload, + ) + except Exception as e: + self.logger.debug(f'Failed to update session: {str(e)}') + self.__sleep(60) + + def __check_blocking_elements(self) -> None: + ''' + Check for blocking elements and dismiss them + ''' + self.logger.debug('Looking for blocking elements...') + + try: + # FInd a button to dismiss the dialog with class="btn relative btn-primary" inside the div[@role="dialog"] + btn_to_dismiss = WebDriverWait(self.driver, 3).until( + EC.presence_of_element_located((By.XPATH, '//div[@role="dialog"]//button[@class="btn relative btn-primary"]')) + ) + if btn_to_dismiss: + self.logger.debug('Dismissing dialog...') + self.driver.execute_script('arguments[0].click()', btn_to_dismiss) + except: + pass + + try: + # for 3 times + i = 0 + while i<=2: + self.__sleep(0.4) + if i !=2: + #get the button with class="btn relative btn-neutral ml-auto" + btn = WebDriverWait(self.driver, 3).until( + EC.presence_of_element_located((By.XPATH, '//button[@class="btn relative btn-neutral ml-auto"]')) + ) + else: + #get the button with class="btn relative btn-primary ml-auto" + btn = WebDriverWait(self.driver, 3).until( + EC.presence_of_element_located((By.XPATH, '//button[@class="btn relative btn-primary ml-auto"]')) + ) + if btn: + self.logger.debug('Dismissing dialog...') + self.driver.execute_script('arguments[0].click()', btn) + i+=1 + except: + pass + + try: + WebDriverWait(self.driver, 1).until( + EC.element_to_be_clickable((By.XPATH, "//button[contains(., 'Get started')]")) + ).click() + self.__sleep() + except: + pass + + def __stream_message(self): + prev_content = '' + while True: + result_streaming = self.driver.find_elements(*chatgpt_streaming) + responses = self.driver.find_elements(*chatgpt_big_response) + if responses: + response = responses[-1] + if 'text-red' in response.get_attribute('class'): + self.logger.debug('Response is an error') + raise ValueError(response.text) + response = self.driver.find_elements(*chatgpt_small_response)[-1] + content = response.text + if content != prev_content: + yield content[len(prev_content) :] + prev_content = content + if not result_streaming: + break + + def generate_image(self, prompt: str) -> str: + """ + Returns: + URL of the generated image + """ + self.send_message(prompt) + + for _ in range(5): + try: + return self.driver.find_element(By.XPATH, "//img[@alt='Generated by DALLĀ·E']").get_attribute('src') + except Exception as e: + print(e) + self.__sleep(0.5) + pass + raise Exception('Failed to generate an image') + + def send_message(self, message: str, stream: bool = False) -> dict: + ''' + Send a message to ChatGPT\n + :param message: Message to send + :return: Dictionary with keys `message` and `conversation_id` + ''' + self.logger.debug('Ensuring Cloudflare cookies...') + self.__ensure_cf() + #self.__check_blocking_elements() + + # Wait for page to load + try: + textbox = WebDriverWait(self.driver, 10).until( + EC.element_to_be_clickable(chatgpt_textbox) + ) + except SeleniumExceptions.ElementClickInterceptedException(): + pass + + # Check for dismiss button + try: + WebDriverWait(self.driver, 2).until( + EC.element_to_be_clickable((By.XPATH, "//button[contains(., 'Dismiss')]")) + ).click() + self.__sleep() + except: + pass + + + self.logger.debug('Sending message...') + try: + textbox = WebDriverWait(self.driver, 3).until( + EC.element_to_be_clickable(chatgpt_textbox) + ) + textbox.click() + except SeleniumExceptions.ElementClickInterceptedException(): + self.__check_blocking_elements() + textbox = WebDriverWait(self.driver, 10).until( + EC.element_to_be_clickable(chatgpt_textbox) + ) + textbox.click() + + self.driver.execute_script( + ''' + var element = arguments[0], txt = arguments[1]; + element.value += txt; + element.dispatchEvent(new Event("change")); + ''', + textbox, + message, + ) + + self.__sleep(0.5) + textbox.send_keys(Keys.ENTER) + self.driver.save_screenshot('send_message.png') + button = textbox.find_element(By.XPATH, "./ancestor::div/button") + button.click() + + if stream: + for i in self.__stream_message(): + print(i, end='') + self.__sleep(0.1) + return print() + + self.logger.debug('Waiting for completion...') + + try: + # Wait until chatgpt stops generating response + regenerate_buttons = (By.XPATH, "//div[preceding-sibling::*[1][self::button] and contains(@class, 'flex') and contains(@class, 'gap-1') and count(button)=2]") + WebDriverWait(self.driver, 300).until( + EC.presence_of_element_located(regenerate_buttons) + ) + except SeleniumExceptions.NoSuchElementException: + self.logger.debug('Regenerate response button not found!') + + def chat(self, message: str, stream: bool = False) -> dict: + self.send_message(message, stream) + self.__sleep(0.5) + + self.logger.debug('Getting response...') + responses = self.driver.find_elements(*chatgpt_big_response) + if responses: + response = responses[-1] + if 'text-red' in response.get_attribute('class'): + self.logger.debug('Response is an error') + raise ValueError(response.text) + responses = self.driver.find_elements(*chatgpt_small_response) + + if len(responses) == 0: # There was some problem, no response was generated + # Check if the request limit is reached + try: + request_limit_xpath = "//*[.//div[contains(text(), \"You've reached our limit of messages per hour. Please try again later.\")]]" + self.driver.find_element(By.XPATH, request_limit_xpath) + raise ValueError("You've reached ChatGPT's limit of messages per hour") + except: + pass # No such element, continue + + + response = responses[-1] + + content = markdownify(response.get_attribute('innerHTML')).replace( + 'Copy code`', '`' + ) + + pattern = re.compile( + r'[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}' + ) + matches = pattern.search(self.driver.current_url) + if not matches: + self.driver.refresh() + self.__sleep(2) + #self.__check_blocking_elements() + self.driver.execute_script("arguments[0].click();", WebDriverWait(self.driver, 10).until( + EC.element_to_be_clickable(chatgpt_chats_list_first_node) + )) + self.__sleep(2) + #print(self.driver.current_url) + matches = pattern.search(self.driver.current_url) + + + #get current url and print it + #print(self.driver.current_url) + #print(matches) + + conversation_id = matches.group() + return {'message': content, 'conversation_id': conversation_id} + #return {'message': content} + + def __sleep(self, sec=1.0, multiplier=2) -> None: + """ + Random sleep to avoid detection + """ + time.sleep(random.uniform(sec, sec * multiplier)) + + def reset_conversation(self) -> None: + ''' + Reset the conversation + ''' + if not self.driver.current_url.startswith(self._chatgpt_chat_url): + return self.logger.debug('Current URL is not chat page, skipping reset') + + self.logger.debug('Resetting conversation...') + try: + self.driver.find_element(*chatgpt_new_chat).click() + except SeleniumExceptions.NoSuchElementException: + self.logger.debug('New chat button not found') + self.driver.save_screenshot('reset_conversation_failed.png') + + def clear_conversations(self) -> None: + ''' + Clear all conversations + ''' + if not self.driver.current_url.startswith(self._chatgpt_chat_url): + return self.logger.debug('Current URL is not chat page, skipping clear') + + self.logger.debug('Clearing conversations...') + try: + self.driver.find_element(*chatgpt_clear_convo).click() + except SeleniumExceptions.NoSuchElementException: + self.logger.debug('Clear conversations button not found') + + try: + self.driver.find_element(*chatgpt_confirm_clear_convo).click() + except SeleniumExceptions.NoSuchElementException: + return self.logger.debug('Confirm clear conversations button not found') + try: + WebDriverWait(self.driver, 20).until_not( + EC.presence_of_element_located(chatgpt_chats_list_first_node) + ) + self.logger.debug('Cleared conversations') + except SeleniumExceptions.TimeoutException: + self.logger.debug('Clear conversations failed') + + def refresh_chat_page(self) -> None: + ''' + Refresh the chat page + ''' + if not self.driver.current_url.startswith(self._chatgpt_chat_url): + return self.logger.debug('Current URL is not chat page, skipping refresh') + + self.driver.get(self._get_url()) + self.__check_capacity(self._get_url()) + self.__check_blocking_elements() diff --git a/metta_vspace/gpt4-openai-api/readme.md b/metta_vspace/gpt4-openai-api/readme.md new file mode 100755 index 00000000..4f27a31a --- /dev/null +++ b/metta_vspace/gpt4-openai-api/readme.md @@ -0,0 +1,110 @@ +# GPT4 OpenAI unofficial API + +## Unofficial GPT-4 API access via chat.openai.com using Selenium + +Have you **applied to GPT-4 API access** but **OpenAI is too busy to reply**? Me too, that's why I created this package. It uses [selenium webdriver](https://www.selenium.dev/) to emulate user interaction on [chat.openai.com](chat.openai.com). If the account has `ChatGPT Plus`, the driver **will use GPT-4**, otherwise it will use the default GPT-3.5. + +It supports both **GPT4 browser, DALL-E 3, and plugins** by selecting model via `GPT4OpenAI(token=token, model='gpt-4')`, or `model='gpt-4-plugins'`. + +**Note:** This unofficial API library is not endorsed by OpenAI and violates their Terms of Service. Use it at your own risk; the creator assumes no liability for any consequences. Please adhere to platform's ToS and exercise caution with unofficial resources. + +The core logic was taken from the [IntelligenzaArtificiale/Free-Auto-GPT](https://github.com/IntelligenzaArtificiale/Free-Auto-GPT). + +## Demo + +[![Demo GIF](https://github.com/Erol444/gpt4-openai-api/assets/18037362/56e735bd-7e57-4dfc-b771-6a6fd1be2397)](https://youtu.be/71UL8TrE5Ls) + +## Demo script + +```python +from gpt4_openai import GPT4OpenAI + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=my_session_token, headless=False, model='gpt-4') +# GPT3.5 will answer 8, while GPT4 should be smart enough to answer 10 +response = llm('If there are 10 books in a room and I read 2, how many books are still in the room?') +print(response) +``` + +## DALL-E 3 support + +This code was used for the demo gif above. + +```python +from gpt4_openai import GPT4OpenAI + +llm = GPT4OpenAI(token=my_session_token, headless=False, + model='gpt-4' # DALL-E 3 only works with gpt-4 + ) + +img_bytes = llm.generate_image('Generate an isometric image of a cute doggo inside a house.', image_path = './img_save_path.png') +``` + +## Browsing support + +```python +from gpt4_openai import GPT4OpenAI + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=my_session_token, headless=False, model='gpt-4-browsing') +# ChatGPT will first browse the web for the name/age of her boyfriend, then return the answer +response = llm('What is the age difference between Dua Lipa and her boyfriend?') +print(response) +``` + +## Langchain support + +`GPT4OpenAI` actually extends `LLM` class from `langchain.llms.base`. So you can easily use this library inside langchain ecosystem. Example: + +```python +from gpt4_openai import GPT4OpenAI +from langchain import LLMChain +from langchain.prompts.chat import (ChatPromptTemplate, SystemMessagePromptTemplate, AIMessagePromptTemplate, HumanMessagePromptTemplate) + +template="You are a helpful assistant that translates english to pirate." +system_message_prompt = SystemMessagePromptTemplate.from_template(template) +example_human = HumanMessagePromptTemplate.from_template("Hi") +example_ai = AIMessagePromptTemplate.from_template("Argh me mateys") +human_message_prompt = HumanMessagePromptTemplate.from_template("{text}") + +chat_prompt = ChatPromptTemplate.from_messages([system_message_prompt, example_human, example_ai, human_message_prompt]) + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=my_session_token) + +chain = LLMChain(llm=llm, prompt=chat_prompt) +print(chain.run("My name is John and I like to eat pizza.")) +``` + +Output will be: +``` +AI: Ahoy, me name be John an' I be likin' ta feast on some pizza, arr! +``` + +## How to get the session token + +1. Go to https://chat.openai.com and open the developer tools by `F12`. +2. Find the `__Secure-next-auth.session-token` cookie in `Application` > `Storage` > `Cookies` > `https://chat.openai.com`. +3. Copy the value in the `Cookie Value` field. + +![image](https://user-images.githubusercontent.com/19218518/206170122-61fbe94f-4b0c-4782-a344-e26ac0d4e2a7.png) + +## OpenAI's GPT4 vs other providers + +Initially, I tried [poe.com ](https://poe.com/) (private API implemented at [gpt4free](https://github.com/gptforfree/gpt4free/tree/main/quora)), but noticed that input context window is smaller than one of OpenAI ChatGPT. And the same goes for Bing's GPT4. + +## Installation + +To install this Python package, run the following command: + +```bash +pip install gpt4-openai-api +``` + +## Dependencies + +These dependencies get downloaded directly: + +- `undetected-chromedriver` (selenium browser) +- `markdownify` +- `langchain` diff --git a/metta_vspace/gpt4-openai-api/setup.py b/metta_vspace/gpt4-openai-api/setup.py new file mode 100755 index 00000000..bfedb94a --- /dev/null +++ b/metta_vspace/gpt4-openai-api/setup.py @@ -0,0 +1,35 @@ +from setuptools import setup +from pathlib import Path + +root = Path(__file__).parent.resolve() +readme_file = root / 'readme.md' +long_description = readme_file.read_text(encoding='utf-8') + +setup( + name="gpt4-openai-api", + version="0.9.0", + description="Python package for unofficial GPT-4 API access via chat.openai.com using Chrome browser via Selenium", + long_description=long_description, + long_description_content_type='text/markdown', + author="Erol444", + author_email="erol123444@gmail.com", + url="https://github.com/Erol444/gpt4-openai-api", + packages=["gpt4_openai"], + install_requires=[ + "undetected-chromedriver>=3.5.3", + "markdownify>=0.11.6", + "langchain", + ], + classifiers=[ + "Development Status :: 3 - Alpha", + "Intended Audience :: Developers", + "License :: OSI Approved :: MIT License", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.6", + "Programming Language :: Python :: 3.7", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10" + ], + python_requires=">=3.6", +) diff --git a/metta_vspace/gpt4-openai-api/test/.env-file b/metta_vspace/gpt4-openai-api/test/.env-file new file mode 100755 index 00000000..cf668a5d --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/.env-file @@ -0,0 +1,3 @@ +# Copy your __Secure-next-auth.session-token from chat.openai.com +# and rename .env-file to .env 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load_dotenv # pip install python-dotenv +from gpt4_openai import GPT4OpenAI +load_dotenv() + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], headless=False, model='gpt-4') +# GPT3.5 will answer 8, while GPT4 should be smart enough to answer 10 +response = llm('If there are 10 books in a room and I read 2, how many books are still in the room?') +print(response) +llm.close() diff --git a/metta_vspace/gpt4-openai-api/test/test_browsing.py b/metta_vspace/gpt4-openai-api/test/test_browsing.py new file mode 100755 index 00000000..5ec58473 --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/test_browsing.py @@ -0,0 +1,13 @@ +import os +from dotenv import load_dotenv # pip install python-dotenv +from gpt4_openai import GPT4OpenAI +load_dotenv() + +# Since November 2023, browsing is integrated into the GPT-4 + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], + headless=False, model='gpt-4') + +response = llm('What is the age difference between Dua Lipa and her boyfriend?') +print(response) diff --git a/metta_vspace/gpt4-openai-api/test/test_code_interpretter.py b/metta_vspace/gpt4-openai-api/test/test_code_interpretter.py new file mode 100755 index 00000000..d9519f97 --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/test_code_interpretter.py @@ -0,0 +1,16 @@ +import os +from dotenv import load_dotenv # pip install python-dotenv +from gpt4_openai import GPT4OpenAI +load_dotenv() + +# Since November 2023, code interpretter is integrated into the GPT-4 + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], + headless=True, + # Either "text-davinci-002-render-sha" (GPT-3.5), "gpt-4", or "gpt-4-plugins" + model='gpt-4') + +response = llm('What are all prime numbers between 1 and 200?') +print(response) +llm.close() \ No newline at end of file diff --git a/metta_vspace/gpt4-openai-api/test/test_continue_generating.py b/metta_vspace/gpt4-openai-api/test/test_continue_generating.py new file mode 100755 index 00000000..3b5e223a --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/test_continue_generating.py @@ -0,0 +1,20 @@ +import os +from dotenv import load_dotenv # pip install python-dotenv +from gpt4_openai import GPT4OpenAI +load_dotenv() + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], model='gpt-4', auto_continue=True, headless=False) + +prompt = """ +Please write a detailed and comprehensive guide to developing a small business, starting from a business idea and +going through all the necessary steps, such as writing a business plan, choosing a legal structure, obtaining financing, +choosing a location, setting up your workspace, recruiting and hiring employees, developing products and services, +marketing, sales, customer service, accounting and bookkeeping, reviewing business performance, and finally planning for +growth and expansion. Be sure to include examples, tips, and potential pitfalls to watch out for along the way. +""" +response = llm(prompt) + +# GPT4 should now return all 15 different steps of the business plan, one by one +print(response) +llm.close() \ No newline at end of file diff --git a/metta_vspace/gpt4-openai-api/test/test_dalle3.py b/metta_vspace/gpt4-openai-api/test/test_dalle3.py new file mode 100755 index 00000000..0af15451 --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/test_dalle3.py @@ -0,0 +1,19 @@ +import os +from gpt4_openai import GPT4OpenAI +import cv2 +import numpy as np + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], + headless=False, + model='gpt-4' # DALL-E 3 only works with gpt-4 + ) + +bytes = llm.generate_image('Generate an isometric image of a cute doggo inside a house.', image_path = './optional_path.png') + +# Convert image bytes to numpy array +img = cv2.imdecode(np.frombuffer(bytes, np.uint8), -1) +cv2.imshow('image', img) +cv2.waitKey(0) + +llm.close() \ No newline at end of file diff --git a/metta_vspace/gpt4-openai-api/test/test_langchain.py b/metta_vspace/gpt4-openai-api/test/test_langchain.py new file mode 100755 index 00000000..15180113 --- /dev/null +++ b/metta_vspace/gpt4-openai-api/test/test_langchain.py @@ -0,0 +1,21 @@ +from dotenv import load_dotenv # pip install python-dotenv +import os +from gpt4_openai import GPT4OpenAI +from langchain.chains.LLMChain import LLMChain +from langchain.prompts.chat import (ChatPromptTemplate, SystemMessagePromptTemplate, AIMessagePromptTemplate, HumanMessagePromptTemplate) + +load_dotenv() + +template="You are a helpful assistant that translates english to pirate." +system_message_prompt = SystemMessagePromptTemplate.from_template(template) +example_human = HumanMessagePromptTemplate.from_template("Hi") +example_ai = AIMessagePromptTemplate.from_template("Argh me mateys") +human_message_prompt = HumanMessagePromptTemplate.from_template("{text}") + +chat_prompt = ChatPromptTemplate.from_messages([system_message_prompt, example_human, example_ai, human_message_prompt]) + +# Token is the __Secure-next-auth.session-token from chat.openai.com +llm = GPT4OpenAI(token=os.environ["OPENAI_SESSION_TOKEN"], headless=False) +chain = LLMChain(llm=llm, prompt=chat_prompt) +print(chain.run("My name is John and I like to eat pizza.")) +llm.close() diff --git a/metta_vspace/pyswip-12-15/chars.data b/metta_vspace/pyswip-12-15/chars.data new file mode 100755 index 00000000..91070ff5 --- /dev/null +++ b/metta_vspace/pyswip-12-15/chars.data @@ -0,0 +1,38781 @@ +:-module(lisp_code_names,[lisp_code_name/2]). +:- set_module(class(library)). +:- set_prolog_flag(double_quotes,chars). + +lisp_code_name(0,"Nul"). +lisp_code_name(1,"Soh"). +lisp_code_name(2,"Stx"). +lisp_code_name(3,"Etx"). +lisp_code_name(4,"Eot"). +lisp_code_name(5,"Enq"). +lisp_code_name(6,"Ack"). +lisp_code_name(7,"Bel"). +lisp_code_name(8,"Backspace"). +lisp_code_name(9,"Tab"). +lisp_code_name(10,"Newline"). +lisp_code_name(11,"Vt"). +lisp_code_name(12,"Page"). +lisp_code_name(13,"Return"). +lisp_code_name(14,"So"). +lisp_code_name(15,"Si"). +lisp_code_name(16,"Dle"). +lisp_code_name(17,"Dc1"). +lisp_code_name(18,"Dc2"). +lisp_code_name(19,"Dc3"). +lisp_code_name(20,"Dc4"). +lisp_code_name(21,"Nak"). +lisp_code_name(22,"Syn"). +lisp_code_name(23,"Etb"). +lisp_code_name(24,"Can"). +lisp_code_name(25,"Em"). +lisp_code_name(26,"Sub"). +lisp_code_name(27,"Esc"). +lisp_code_name(28,"Fs"). +lisp_code_name(29,"Gs"). +lisp_code_name(30,"Rs"). +lisp_code_name(31,"Us"). +lisp_code_name(32,"Space"). +lisp_code_name(33,"EXCLAMATION_MARK"). +lisp_code_name(34,"QUOTATION_MARK"). +lisp_code_name(35,"NUMBER_SIGN"). +lisp_code_name(36,"DOLLAR_SIGN"). +lisp_code_name(37,"PERCENT_SIGN"). +lisp_code_name(38,"AMPERSAND"). +lisp_code_name(39,"APOSTROPHE"). +lisp_code_name(40,"LEFT_PARENTHESIS"). +lisp_code_name(41,"RIGHT_PARENTHESIS"). +lisp_code_name(42,"ASTERISK"). +lisp_code_name(43,"PLUS_SIGN"). +lisp_code_name(44,"COMMA"). +lisp_code_name(45,"HYPHEN-MINUS"). +lisp_code_name(46,"FULL_STOP"). +lisp_code_name(47,"SOLIDUS"). +lisp_code_name(48,"DIGIT_ZERO"). +lisp_code_name(49,"DIGIT_ONE"). +lisp_code_name(50,"DIGIT_TWO"). +lisp_code_name(51,"DIGIT_THREE"). +lisp_code_name(52,"DIGIT_FOUR"). +lisp_code_name(53,"DIGIT_FIVE"). +lisp_code_name(54,"DIGIT_SIX"). +lisp_code_name(55,"DIGIT_SEVEN"). +lisp_code_name(56,"DIGIT_EIGHT"). +lisp_code_name(57,"DIGIT_NINE"). +lisp_code_name(58,"COLON"). +lisp_code_name(59,"SEMICOLON"). +lisp_code_name(60,"LESS-THAN_SIGN"). +lisp_code_name(61,"EQUALS_SIGN"). +lisp_code_name(62,"GREATER-THAN_SIGN"). +lisp_code_name(63,"QUESTION_MARK"). +lisp_code_name(64,"COMMERCIAL_AT"). +lisp_code_name(65,"LATIN_CAPITAL_LETTER_A"). +lisp_code_name(66,"LATIN_CAPITAL_LETTER_B"). +lisp_code_name(67,"LATIN_CAPITAL_LETTER_C"). +lisp_code_name(68,"LATIN_CAPITAL_LETTER_D"). +lisp_code_name(69,"LATIN_CAPITAL_LETTER_E"). +lisp_code_name(70,"LATIN_CAPITAL_LETTER_F"). +lisp_code_name(71,"LATIN_CAPITAL_LETTER_G"). +lisp_code_name(72,"LATIN_CAPITAL_LETTER_H"). +lisp_code_name(73,"LATIN_CAPITAL_LETTER_I"). +lisp_code_name(74,"LATIN_CAPITAL_LETTER_J"). +lisp_code_name(75,"LATIN_CAPITAL_LETTER_K"). +lisp_code_name(76,"LATIN_CAPITAL_LETTER_L"). +lisp_code_name(77,"LATIN_CAPITAL_LETTER_M"). +lisp_code_name(78,"LATIN_CAPITAL_LETTER_N"). +lisp_code_name(79,"LATIN_CAPITAL_LETTER_O"). +lisp_code_name(80,"LATIN_CAPITAL_LETTER_P"). +lisp_code_name(81,"LATIN_CAPITAL_LETTER_Q"). +lisp_code_name(82,"LATIN_CAPITAL_LETTER_R"). +lisp_code_name(83,"LATIN_CAPITAL_LETTER_S"). +lisp_code_name(84,"LATIN_CAPITAL_LETTER_T"). +lisp_code_name(85,"LATIN_CAPITAL_LETTER_U"). +lisp_code_name(86,"LATIN_CAPITAL_LETTER_V"). +lisp_code_name(87,"LATIN_CAPITAL_LETTER_W"). +lisp_code_name(88,"LATIN_CAPITAL_LETTER_X"). +lisp_code_name(89,"LATIN_CAPITAL_LETTER_Y"). +lisp_code_name(90,"LATIN_CAPITAL_LETTER_Z"). +lisp_code_name(91,"LEFT_SQUARE_BRACKET"). +lisp_code_name(92,"REVERSE_SOLIDUS"). +lisp_code_name(93,"RIGHT_SQUARE_BRACKET"). +lisp_code_name(94,"CIRCUMFLEX_ACCENT"). +lisp_code_name(95,"LOW_LINE"). +lisp_code_name(96,"GRAVE_ACCENT"). +lisp_code_name(97,"LATIN_SMALL_LETTER_A"). +lisp_code_name(98,"LATIN_SMALL_LETTER_B"). +lisp_code_name(99,"LATIN_SMALL_LETTER_C"). +lisp_code_name(100,"LATIN_SMALL_LETTER_D"). +lisp_code_name(101,"LATIN_SMALL_LETTER_E"). +lisp_code_name(102,"LATIN_SMALL_LETTER_F"). +lisp_code_name(103,"LATIN_SMALL_LETTER_G"). +lisp_code_name(104,"LATIN_SMALL_LETTER_H"). +lisp_code_name(105,"LATIN_SMALL_LETTER_I"). +lisp_code_name(106,"LATIN_SMALL_LETTER_J"). +lisp_code_name(107,"LATIN_SMALL_LETTER_K"). +lisp_code_name(108,"LATIN_SMALL_LETTER_L"). +lisp_code_name(109,"LATIN_SMALL_LETTER_M"). +lisp_code_name(110,"LATIN_SMALL_LETTER_N"). +lisp_code_name(111,"LATIN_SMALL_LETTER_O"). +lisp_code_name(112,"LATIN_SMALL_LETTER_P"). +lisp_code_name(113,"LATIN_SMALL_LETTER_Q"). +lisp_code_name(114,"LATIN_SMALL_LETTER_R"). +lisp_code_name(115,"LATIN_SMALL_LETTER_S"). +lisp_code_name(116,"LATIN_SMALL_LETTER_T"). +lisp_code_name(117,"LATIN_SMALL_LETTER_U"). +lisp_code_name(118,"LATIN_SMALL_LETTER_V"). +lisp_code_name(119,"LATIN_SMALL_LETTER_W"). +lisp_code_name(120,"LATIN_SMALL_LETTER_X"). +lisp_code_name(121,"LATIN_SMALL_LETTER_Y"). +lisp_code_name(122,"LATIN_SMALL_LETTER_Z"). +lisp_code_name(123,"LEFT_CURLY_BRACKET"). +lisp_code_name(124,"VERTICAL_LINE"). +lisp_code_name(125,"RIGHT_CURLY_BRACKET"). +lisp_code_name(126,"TILDE"). +lisp_code_name(127,"Rubout"). +lisp_code_name(128,"C80"). +lisp_code_name(129,"C81"). +lisp_code_name(130,"Break-Permitted"). +lisp_code_name(131,"No-Break-Permitted"). +lisp_code_name(132,"C84"). +lisp_code_name(133,"Next-Line"). +lisp_code_name(134,"Start-Selected-Area"). +lisp_code_name(135,"End-Selected-Area"). +lisp_code_name(136,"Character-Tabulation-Set"). +lisp_code_name(137,"Character-Tabulation-With-Justification"). +lisp_code_name(138,"Line-Tabulation-Set"). +lisp_code_name(139,"Partial-Line-Forward"). +lisp_code_name(140,"Partial-Line-Backward"). +lisp_code_name(141,"Reverse-Linefeed"). +lisp_code_name(142,"Single-Shift-Two"). +lisp_code_name(143,"Single-Shift-Three"). +lisp_code_name(144,"Device-Control-String"). +lisp_code_name(145,"Private-Use-One"). +lisp_code_name(146,"Private-Use-Two"). +lisp_code_name(147,"Set-Transmit-State"). +lisp_code_name(148,"Cancel-Character"). +lisp_code_name(149,"Message-Waiting"). +lisp_code_name(150,"Start-Guarded-Area"). +lisp_code_name(151,"End-Guarded-Area"). +lisp_code_name(152,"Start-String"). +lisp_code_name(153,"C99"). +lisp_code_name(154,"Single-Character-Introducer"). +lisp_code_name(155,"Control-Sequence-Introducer"). +lisp_code_name(156,"String-Terminator"). +lisp_code_name(157,"Operating-System-Command"). +lisp_code_name(158,"Privacy-Message"). +lisp_code_name(159,"Application-Program-Command"). +lisp_code_name(160,"NO-BREAK_SPACE"). +lisp_code_name(161,"INVERTED_EXCLAMATION_MARK"). +lisp_code_name(162,"CENT_SIGN"). +lisp_code_name(163,"POUND_SIGN"). +lisp_code_name(164,"CURRENCY_SIGN"). +lisp_code_name(165,"YEN_SIGN"). +lisp_code_name(166,"BROKEN_BAR"). +lisp_code_name(167,"SECTION_SIGN"). +lisp_code_name(168,"DIAERESIS"). +lisp_code_name(169,"COPYRIGHT_SIGN"). +lisp_code_name(170,"FEMININE_ORDINAL_INDICATOR"). +lisp_code_name(171,"LEFT-POINTING_DOUBLE_ANGLE_QUOTATION_MARK"). +lisp_code_name(172,"NOT_SIGN"). +lisp_code_name(173,"SOFT_HYPHEN"). +lisp_code_name(174,"REGISTERED_SIGN"). +lisp_code_name(175,"MACRON"). +lisp_code_name(176,"DEGREE_SIGN"). +lisp_code_name(177,"PLUS-MINUS_SIGN"). +lisp_code_name(178,"SUPERSCRIPT_TWO"). +lisp_code_name(179,"SUPERSCRIPT_THREE"). +lisp_code_name(180,"ACUTE_ACCENT"). +lisp_code_name(181,"MICRO_SIGN"). +lisp_code_name(182,"PILCROW_SIGN"). +lisp_code_name(183,"MIDDLE_DOT"). +lisp_code_name(184,"CEDILLA"). +lisp_code_name(185,"SUPERSCRIPT_ONE"). +lisp_code_name(186,"MASCULINE_ORDINAL_INDICATOR"). +lisp_code_name(187,"RIGHT-POINTING_DOUBLE_ANGLE_QUOTATION_MARK"). +lisp_code_name(188,"VULGAR_FRACTION_ONE_QUARTER"). +lisp_code_name(189,"VULGAR_FRACTION_ONE_HALF"). +lisp_code_name(190,"VULGAR_FRACTION_THREE_QUARTERS"). +lisp_code_name(191,"INVERTED_QUESTION_MARK"). +lisp_code_name(192,"LATIN_CAPITAL_LETTER_A_WITH_GRAVE"). +lisp_code_name(193,"LATIN_CAPITAL_LETTER_A_WITH_ACUTE"). +lisp_code_name(194,"LATIN_CAPITAL_LETTER_A_WITH_CIRCUMFLEX"). +lisp_code_name(195,"LATIN_CAPITAL_LETTER_A_WITH_TILDE"). +lisp_code_name(196,"LATIN_CAPITAL_LETTER_A_WITH_DIAERESIS"). +lisp_code_name(197,"LATIN_CAPITAL_LETTER_A_WITH_RING_ABOVE"). +lisp_code_name(198,"LATIN_CAPITAL_LETTER_AE"). +lisp_code_name(199,"LATIN_CAPITAL_LETTER_C_WITH_CEDILLA"). +lisp_code_name(200,"LATIN_CAPITAL_LETTER_E_WITH_GRAVE"). +lisp_code_name(201,"LATIN_CAPITAL_LETTER_E_WITH_ACUTE"). +lisp_code_name(202,"LATIN_CAPITAL_LETTER_E_WITH_CIRCUMFLEX"). +lisp_code_name(203,"LATIN_CAPITAL_LETTER_E_WITH_DIAERESIS"). +lisp_code_name(204,"LATIN_CAPITAL_LETTER_I_WITH_GRAVE"). +lisp_code_name(205,"LATIN_CAPITAL_LETTER_I_WITH_ACUTE"). +lisp_code_name(206,"LATIN_CAPITAL_LETTER_I_WITH_CIRCUMFLEX"). +lisp_code_name(207,"LATIN_CAPITAL_LETTER_I_WITH_DIAERESIS"). +lisp_code_name(208,"LATIN_CAPITAL_LETTER_ETH"). +lisp_code_name(209,"LATIN_CAPITAL_LETTER_N_WITH_TILDE"). +lisp_code_name(210,"LATIN_CAPITAL_LETTER_O_WITH_GRAVE"). +lisp_code_name(211,"LATIN_CAPITAL_LETTER_O_WITH_ACUTE"). +lisp_code_name(212,"LATIN_CAPITAL_LETTER_O_WITH_CIRCUMFLEX"). +lisp_code_name(213,"LATIN_CAPITAL_LETTER_O_WITH_TILDE"). +lisp_code_name(214,"LATIN_CAPITAL_LETTER_O_WITH_DIAERESIS"). +lisp_code_name(215,"MULTIPLICATION_SIGN"). +lisp_code_name(216,"LATIN_CAPITAL_LETTER_O_WITH_STROKE"). +lisp_code_name(217,"LATIN_CAPITAL_LETTER_U_WITH_GRAVE"). 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+lisp_code_name(194996,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B4"). +lisp_code_name(194997,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B5"). +lisp_code_name(194998,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B6"). +lisp_code_name(194999,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B7"). +lisp_code_name(195000,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B8"). +lisp_code_name(195001,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B9"). +lisp_code_name(195002,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BA"). +lisp_code_name(195003,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BB"). +lisp_code_name(195004,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BC"). +lisp_code_name(195005,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BD"). +lisp_code_name(195006,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BE"). +lisp_code_name(195007,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BF"). +lisp_code_name(195008,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C0"). +lisp_code_name(195009,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C1"). +lisp_code_name(195010,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C2"). +lisp_code_name(195011,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C3"). +lisp_code_name(195012,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C4"). +lisp_code_name(195013,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C5"). +lisp_code_name(195014,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C6"). +lisp_code_name(195015,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C7"). +lisp_code_name(195016,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C8"). +lisp_code_name(195017,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C9"). +lisp_code_name(195018,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CA"). +lisp_code_name(195019,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CB"). +lisp_code_name(195020,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CC"). +lisp_code_name(195021,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CD"). +lisp_code_name(195022,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CE"). +lisp_code_name(195023,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CF"). +lisp_code_name(195024,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D0"). +lisp_code_name(195025,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D1"). +lisp_code_name(195026,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D2"). +lisp_code_name(195027,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D3"). +lisp_code_name(195028,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D4"). +lisp_code_name(195029,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D5"). +lisp_code_name(195030,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D6"). +lisp_code_name(195031,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D7"). +lisp_code_name(195032,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D8"). +lisp_code_name(195033,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D9"). +lisp_code_name(195034,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DA"). +lisp_code_name(195035,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DB"). +lisp_code_name(195036,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DC"). +lisp_code_name(195037,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DD"). +lisp_code_name(195038,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DE"). +lisp_code_name(195039,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DF"). +lisp_code_name(195040,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E0"). +lisp_code_name(195041,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E1"). +lisp_code_name(195042,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E2"). +lisp_code_name(195043,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E3"). +lisp_code_name(195044,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E4"). +lisp_code_name(195045,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E5"). +lisp_code_name(195046,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E6"). +lisp_code_name(195047,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E7"). +lisp_code_name(195048,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E8"). +lisp_code_name(195049,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E9"). +lisp_code_name(195050,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EA"). +lisp_code_name(195051,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EB"). +lisp_code_name(195052,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EC"). +lisp_code_name(195053,"CJK_COMPATIBILITY_IDEOGRAPH-2F9ED"). +lisp_code_name(195054,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EE"). +lisp_code_name(195055,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EF"). +lisp_code_name(195056,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F0"). +lisp_code_name(195057,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F1"). +lisp_code_name(195058,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F2"). +lisp_code_name(195059,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F3"). +lisp_code_name(195060,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F4"). +lisp_code_name(195061,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F5"). +lisp_code_name(195062,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F6"). +lisp_code_name(195063,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F7"). +lisp_code_name(195064,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F8"). +lisp_code_name(195065,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F9"). +lisp_code_name(195066,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FA"). +lisp_code_name(195067,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FB"). +lisp_code_name(195068,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FC"). +lisp_code_name(195069,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FD"). +lisp_code_name(195070,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FE"). +lisp_code_name(195071,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FF"). +lisp_code_name(195072,"CJK_COMPATIBILITY_IDEOGRAPH-2FA00"). +lisp_code_name(195073,"CJK_COMPATIBILITY_IDEOGRAPH-2FA01"). +lisp_code_name(195074,"CJK_COMPATIBILITY_IDEOGRAPH-2FA02"). +lisp_code_name(195075,"CJK_COMPATIBILITY_IDEOGRAPH-2FA03"). +lisp_code_name(195076,"CJK_COMPATIBILITY_IDEOGRAPH-2FA04"). +lisp_code_name(195077,"CJK_COMPATIBILITY_IDEOGRAPH-2FA05"). +lisp_code_name(195078,"CJK_COMPATIBILITY_IDEOGRAPH-2FA06"). +lisp_code_name(195079,"CJK_COMPATIBILITY_IDEOGRAPH-2FA07"). +lisp_code_name(195080,"CJK_COMPATIBILITY_IDEOGRAPH-2FA08"). +lisp_code_name(195081,"CJK_COMPATIBILITY_IDEOGRAPH-2FA09"). +lisp_code_name(195082,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0A"). +lisp_code_name(195083,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0B"). +lisp_code_name(195084,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0C"). +lisp_code_name(195085,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0D"). +lisp_code_name(195086,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0E"). +lisp_code_name(195087,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0F"). +lisp_code_name(195088,"CJK_COMPATIBILITY_IDEOGRAPH-2FA10"). +lisp_code_name(195089,"CJK_COMPATIBILITY_IDEOGRAPH-2FA11"). +lisp_code_name(195090,"CJK_COMPATIBILITY_IDEOGRAPH-2FA12"). +lisp_code_name(195091,"CJK_COMPATIBILITY_IDEOGRAPH-2FA13"). +lisp_code_name(195092,"CJK_COMPATIBILITY_IDEOGRAPH-2FA14"). +lisp_code_name(195093,"CJK_COMPATIBILITY_IDEOGRAPH-2FA15"). +lisp_code_name(195094,"CJK_COMPATIBILITY_IDEOGRAPH-2FA16"). +lisp_code_name(195095,"CJK_COMPATIBILITY_IDEOGRAPH-2FA17"). +lisp_code_name(195096,"CJK_COMPATIBILITY_IDEOGRAPH-2FA18"). +lisp_code_name(195097,"CJK_COMPATIBILITY_IDEOGRAPH-2FA19"). +lisp_code_name(195098,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1A"). +lisp_code_name(195099,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1B"). +lisp_code_name(195100,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1C"). +lisp_code_name(195101,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1D"). + +:- endif. + diff --git a/metta_vspace/pyswip-12-15/flybase_convert.pl b/metta_vspace/pyswip-12-15/flybase_convert.pl new file mode 100755 index 00000000..4ce70154 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_convert.pl @@ -0,0 +1,10 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +:- ensure_loaded(flybase_main). +:- ensure_loaded(flybase_json). +:- ensure_loaded(flybase_obo). +%:- ensure_loaded(swi_support). + + diff --git a/metta_vspace/pyswip-12-15/flybase_induced_types.pl b/metta_vspace/pyswip-12-15/flybase_induced_types.pl new file mode 100755 index 00000000..667de526 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_induced_types.pl @@ -0,0 +1,1659 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +/* +Finding Publications That Link Multiple Mutations +SQL Version: + +SELECT P1.title AS Publication1, M1.name AS Mutation1, P2.title AS Publication2, M2.name AS Mutation2 +FROM Mutation AS M1 +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS P1 ON MP1.publication_id = P1.id +INNER JOIN MutationPublication AS MP2 ON M1.id != MP2.mutation_id +INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id +INNER JOIN Publication AS P2 ON MP2.publication_id = P2.id AND P1.id = P2.id +WHERE M1.name != M2.name +*/ + + + +linked_mutations(Publication1, Mutation1, Publication2, Mutation2) :- + mutation(M1_id, Mutation1), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Publication1), + mutation_publication(M2_id, MP2_id), + mutation(M2_id, Mutation2), + publication(MP2_id, Publication2), + M1_id \= M2_id, + Mutation1 \= Mutation2, + MP1_id = MP2_id. + +/* + Publications Discussing Mutations in Related Genes +SQL Version: + +SELECT G1.name AS Gene1, M1.name AS Mutation1, G2.name AS Gene2, M2.name AS Mutation2, P.title +FROM Gene AS G1 +INNER JOIN Mutation AS M1 ON G1.id = M1.gene_id +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS P ON MP1.publication_id = P.id +INNER JOIN Mutation AS M2 ON P.id IN (SELECT publication_id FROM MutationPublication WHERE mutation_id = M2.id) +INNER JOIN Gene AS G2 ON M2.gene_id = G2.id AND G1.id != G2.id +WHERE G1.function = G2.function OR G1.pathway = G2.pathway +*/ + + + +related_genes_publication(Gene1, Mutation1, Gene2, Mutation2, Title) :- + gene(G1_id, Gene1, Function1, Pathway1), + mutation(M1_id, Mutation1), + mutation_gene(M1_id, G1_id), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Title), + gene(G2_id, Gene2, Function2, Pathway2), + mutation(M2_id, Mutation2), + mutation_gene(M2_id, G2_id), + mutation_publication(M2_id, MP2_id), + publication(MP2_id, Title), + G1_id \= G2_id, + (Function1 = Function2; Pathway1 = Pathway2). + +/* + + Publications Linking Phenotypic Effects of Different Mutations +SQL Version: + +SELECT M1.name AS Mutation1, P1.description AS Phenotype1, M2.name AS Mutation2, P2.description AS Phenotype2, Pub.title +FROM Mutation AS M1 +INNER JOIN Phenotype AS P1 ON M1.phenotype_id = P1.id +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS Pub ON MP1.publication_id = Pub.id +INNER JOIN MutationPublication AS MP2 ON Pub.id = MP2.publication_id AND MP1.mutation_id != MP2.mutation_id +INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id +INNER JOIN Phenotype AS P2 ON M2.phenotype_id = P2.id +*/ + + + +linked_phenotypes(Publication, Mutation1, Phenotype1, Mutation2, Phenotype2) :- + mutation(M1_id, Mutation1), + mutation_phenotype(M1_id, P1_id), + phenotype(P1_id, Phenotype1), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Publication), + mutation_publication(M2_id, MP2_id), + mutation(M2_id, Mutation2), + mutation_phenotype(M2_id, P2_id), + phenotype(P2_id, Phenotype2), + publication(MP2_id, Publication), + M1_id \= M2_id. + + + + +/* + + Gene Expression and Phenotypes +SQL Version: + + +SELECT Gene.name, Expression.tissue, Phenotype.description +FROM Gene +INNER JOIN Expression ON Gene.id = Expression.gene_id +INNER JOIN Phenotype ON Gene.id = Phenotype.gene_id +WHERE Expression.tissue = 'wing disc' AND Phenotype.description LIKE '%wing defects%' +*/ + + + +gene_expression_phenotype(GeneName, Tissue, PhenotypeDescription) :- + gene(GeneId, GeneName), + expression(GeneId, Tissue), + Tissue = 'wing disc', + phenotype(GeneId, PhenotypeDescription), + sub_string(PhenotypeDescription, _, _, _, 'wing defects'). + +/* + Protein-Protein Interactions +SQL Version: + +SELECT Protein1.name, Protein2.name +FROM Protein AS Protein1 +INNER JOIN Interaction ON Protein1.id = Interaction.protein1_id +INNER JOIN Protein AS Protein2 ON Interaction.protein2_id = Protein2.id +WHERE Protein1.name = 'protein_of_interest' +*/ + + + +protein_interaction(ProteinName1, ProteinName2) :- + protein(Protein1Id, ProteinName1), + ProteinName1 = 'protein_of_interest', + interaction(Protein1Id, Protein2Id), + protein(Protein2Id, ProteinName2). + +/* + Genetic Modifiers of a Mutation +SQL Version: + +SELECT ModifierGene.name, Mutation.name, ModifiedPhenotype.description +FROM Gene AS ModifierGene +INNER JOIN GeneticInteraction ON ModifierGene.id = GeneticInteraction.modifier_gene_id +INNER JOIN Mutation ON GeneticInteraction.mutation_id = Mutation.id +INNER JOIN Phenotype AS ModifiedPhenotype ON Mutation.phenotype_id = ModifiedPhenotype.id +WHERE Mutation.name = 'specific_mutation' +*/ + + + +genetic_modifier(ModifierGeneName, MutationName, PhenotypeDescription) :- + gene(ModifierGeneId, ModifierGeneName), + genetic_interaction(ModifierGeneId, MutationId), + mutation(MutationId, MutationName), + MutationName = 'specific_mutation', + phenotype(MutationId, PhenotypeDescription). + +/* +4. Gene Ontology (GO) Annotations +SQL Version: + +SELECT Gene.name, GOAnnotation.GO_term, GOAnnotation.description +FROM Gene +INNER JOIN GOAnnotation ON Gene.id = GOAnnotation.gene_id +WHERE Gene.name IN ('gene1', 'gene2', 'gene3') +*/ + + + +gene_go_annotation(GeneName, GOTerm, GODescription) :- + gene(GeneId, GeneName), + member(GeneName, ['gene1', 'gene2', 'gene3']), + go_annotation(GeneId, GOTerm, GODescription). + + +/* + +SELECT Strain.name, StockCenter.name, StockCenter.location +FROM Strain +INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id +WHERE Strain.name LIKE '%desired_trait%' +ChatGPT +Translating these SQL queries to Prolog predicates involves creating a set of Prolog facts and rules that mimic the structure and logic of the SQL database and queries. Here's how each of these queries can be represented in Prolog: + + Gene Alleles and Associated Diseases + +SELECT Gene.name, Allele.name, Disease.human_disease +FROM Gene +INNER JOIN Allele ON Gene.id = Allele.gene_id +LEFT JOIN Disease ON Allele.disease_id = Disease.id +WHERE Gene.name = 'target_gene_name' +*/ + + + +gene_allele_disease(GeneName, AlleleName, HumanDisease) :- + gene(GeneId, GeneName), + GeneName = 'target_gene_name', + allele(GeneId, AlleleId, AlleleName), + ( disease(AlleleId, HumanDisease) + ; HumanDisease = 'No associated disease'). + +/* + + Transcription Factors Regulating a Gene +SQL Version: +SELECT TranscriptionFactor.name, TargetGene.name, Regulation.type +FROM Gene AS TranscriptionFactor +INNER JOIN GeneRegulation AS Regulation ON TranscriptionFactor.id = Regulation.transcription_factor_id +INNER JOIN Gene AS TargetGene ON Regulation.target_gene_id = TargetGene.id +WHERE TargetGene.name = 'specific_target_gene' +*/ + + + +transcription_factor_regulation(TranscriptionFactorName, TargetGeneName, RegulationType) :- + gene(TranscriptionFactorId, TranscriptionFactorName), + gene_regulation(TranscriptionFactorId, TargetGeneId, RegulationType), + gene(TargetGeneId, TargetGeneName), + TargetGeneName = 'specific_target_gene'. + +/* + + Publications Related to a Gene Mutation +SQL Version: + +SELECT Mutation.name, Publication.title, Publication.authors +FROM Mutation +INNER JOIN MutationPublication ON Mutation.id = MutationPublication.mutation_id +INNER JOIN Publication ON MutationPublication.publication_id = Publication.id +WHERE Mutation.name = 'specific_mutation_name' +*/ + + + +mutation_publication_info(MutationName, Title, Authors) :- + mutation(MutationId, MutationName), + MutationName = 'specific_mutation_name', + mutation_publication(MutationId, PublicationId), + publication(PublicationId, Title, Authors). + +/* + +4. RNAi Knockdown Effects on Phenotype +SQL Version: + +SELECT Gene.name, RNAiExperiment.description, Phenotype.description +FROM Gene +INNER JOIN RNAiExperiment ON Gene.id = RNAiExperiment.gene_id +INNER JOIN Phenotype ON RNAiExperiment.phenotype_id = Phenotype.id +WHERE Gene.name = 'gene_of_interest' +*/ + + + +rnai_knockdown_phenotype(GeneName, RNAiDescription, PhenotypeDescription) :- + gene(GeneId, GeneName), + GeneName = 'gene_of_interest', + rnai_experiment(GeneId, RNAiId, RNAiDescription), + phenotype(RNAiId, PhenotypeDescription). + + + +/* +5. Stock Center Information for Specific Strains + +SELECT Strain.name, StockCenter.name, StockCenter.location +FROM Strain +INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id +WHERE Strain.name LIKE '%desired_trait%' +*/ +stock_center_info(StrainName, StockCenterName, Location) :- + strain(StrainId, StrainName), + sub_string(StrainName, _, _, _, 'desired_trait'), + stock_center(StrainId, StockCenterId, StockCenterName, Location). + + + + + + + +flybase_tables([ +analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, +cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, +cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, +loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, +expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, +feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, +feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, +feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, +feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, +featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, +genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, +grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, +grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, +humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, +humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, +humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, +interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, +interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, +library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, +library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, + libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, + organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, + phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, + sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, + stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, + strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, +strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). + +/* +table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). +table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). +table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). +table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). +table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). +*//* +table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(fbgn_uniprot, 2, gene_symbol, _). +table_n_type(fbgn_uniprot, 3, 'CG', _). +table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). +table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). +table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +*/ + + +ncRNA_genes_fb_scheme( +' +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "title": "RNAcentral ncRNA object", + "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", + "id": "ncrna.json#", + "type": "object", + "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], + "additionalProperties": false, + "properties": { + "primaryId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." + }, + "taxonId": { + "$ref" : "global-id.json#/properties/globalId", + "description" : "The NCBI taxonId for the species of the gene entity." + }, + "soTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." + }, + "ecoTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The ECO Term that represents the evidence for this sequence having the given SO term." + }, + "sequence": { + "$ref": "sequence.json#properties/sequence", + "description": "The DNA sequence of this entry." + }, + "name": { + "type": "string", + "description": "The name of this sequence." + }, + "description": { + "type": "string", + "description": "An informative human readable description. If not provided then it will be generated using the name and species information." + }, + "symbol": { + "type": "string", + "description": "The symbol for this ncRNA" + }, + "symbolSynonyms": { + "type": "array", + "items": { + "type": "string" + }, + "uniqueItems": true, + "description": "A list of other symbols for the ncRNA" + }, + "version": { + "description": "The version of this sequence, if any" + }, + "gene": { + "$ref": "gene.json#" + }, + "crossReferenceIds": { + "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", + "type": "array", + "items": { + "$ref" : "global-id.json#/properties/globalId" + }, + "uniqueItems": true + }, + "genomeLocations": { + "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", + "type": "array", + "items": { + "$ref" : "location.json#" + }, + "uniqueItems": true + }, + "url": { + "type": "string", + "format": "uri", + "description": "URL to the page for this entry in the database" + }, + "externalUrl": { + "type": "string", + "format": "uri", + "description": "URL to a synopsis outside the database, like wikipedia." + }, + "secondaryStructure": { + "description": "The secondary structure in dot-bracket notation for this sequence", + "$ref": "secondary-structure.json#/properties/dot_bracket" + }, + "publications": { + "description": "List of references to associate with this sequence.", + "type": "array", + "items": { + "anyOf": [ + { "$ref": "publications.json#/properties/pubMedId" }, + { "$ref": "publications.json#/properties/doi" } + ] + }, + "uniqueItems": true + }, + "localization": { + "description": "Name of the organelle or plasmid this sequence is found in", + "enum": [ + "mitochondria", + "plastid", + "chloroplast", + "plasmid" + ] + }, + "sequenceFeatures": { + "anticodon": { + "description": "Information about the anticodon", + "$ref": "anticodon.json#" + }, + "modifications": { + "description": "List of the modifications in this sequence", + "type": "array", + "items": { + "$ref": "modification.json#" + }, + "uniqueItems": true + } + }, + "sourceModel": { + "description": "Information about the model used to find this sequence", + "$ref" : "global-id.json#/properties/globalId" + }, + "product": { + "description": "The name of the product, this should be more specific than the name of the SO term that was provided", + "type": "string" + }, + "additionalAnnotations": { + "isoType": { + "description": "The isoType of this tRNA", + "enum": [ + "Ala", + "Cys", + "Asp", + "Glu", + "Phe", + "Gly", + "His", + "Ile", + "Lys", + "Leu", + "iMet", + "Met", + "Asn", + "Pro", + "Gln", + "Arg", + "Ser", + "Thr", + "Val", + "Trp", + "Tyr" + ] + } + }, + "relatedSequences": { + "description": "Information about related sequences, like precursors or targets", + "type": "array", + "items": { + "$ref": "related-sequence.json#" + }, + "uniqueItems": true + }, + "inferredPhylogeny": { + "description": "A phylogeny that has been inferred for this sequence", + "$ref": "inferred-phylogeny.json#" + } + } +}'). + +% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference +:- dynamic maybe_corisponds/2. +:- dynamic numeric_value_p_n/3. +:- module_transparent maybe_corisponds/2. +:- module_transparent numeric_value_p_n/3. +column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). +column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). +column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). +column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). +column_names(automated_gene_summaries, [primary_FBgn, summary_text]). +column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). +column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). +column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). +column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). +column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). +column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). +column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). +column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). +column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). +column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). +column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). +column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). +column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). +column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). +column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). +column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). +column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). +column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). +column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). +column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). +column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). +column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). +column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). +column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). +column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). +column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). +column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). +column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). +column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). +column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). +column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 3, synonym/6)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(description, 6, stocks/7)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(uniquename, 5, stocks/7)). +maybe_corisponds('ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4), 'ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Based_on_orthology_with_(symbol)', 10, disease_model_annotations/12), 'ConceptMapFn'('Human_gene_symbol', 5, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_name', 3, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_group/7), 'ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_symbol', 2, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBal', 1, fbal_to_fbgn/4), 'ConceptMapFn'('FBal', 7, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBal', 7, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, synonym/6)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 1, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBpp', 3, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBpp', 10, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBtr', 2, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBtr', 8, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(species, 2, organism_list/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(ortholog_gene_symbol, 3, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('Genetic_map_position', 2, 'cyto-genetic-seq'/4), 'ConceptMapFn'(recombination_loc, 4, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('HGNC', 3, dmel_human_orthologs_disease/8), 'ConceptMapFn'('HGNC', 9, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Summary', 4, best_gene_summary/4), 'ConceptMapFn'(gene_snapshot_text, 5, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'(allele_symbol, 1, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 7, genotype_phenotype/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 1, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 2, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PMID', 2, fbrf_pmid_pmcid_doi/7)). +maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PubMed', 4, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'(current_fullname, 4, synonym/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 1, fbgn_uniprot/4)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('EST_accession', 6, cDNA_clone/6)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(accession, 4, genomic_clone/4)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(clone_name, 3, cDNA_clone/6)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_uniprot/4), 'ConceptMapFn'(_, 6, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 5, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 4, fbgn_uniprot/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(description, 6, stocks/7)). +maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(uniquename, 5, stocks/7)). +maybe_corisponds('ConceptMapFn'(cytogenetic_loc, 5, gene_map_table/6), 'ConceptMapFn'(estimated_cytogenetic_location, 6, insertion_mapping/7)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(identical_protein, 4, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(representative_protein, 3, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). +numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). +numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). +numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). +numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). +numeric_value_p_n(dmel_paralogs, 5, 'Strand'). +numeric_value_p_n(entity_publication, 4, 'PubMed'). +numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). +numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). +numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). +numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). +numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). +numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). +numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). +numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). +numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). +numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). +numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). +numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). +numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). +numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). +numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). +numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). +numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). +numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). +numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). +numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). +numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). +numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). +numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). +numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). +numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). +numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). +numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). +numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). +numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). +numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). +numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). +numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). +numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). +numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). +numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). +numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). +numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). +numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). +numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). +numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). +numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). +numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). +numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). +numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). +numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). +numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). +numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). +numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). +numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). +numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). +numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). +numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). +numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). +numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). +numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). +numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). +numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). +numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). +numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). +numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). +numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). +numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). +numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). +numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). +numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). +numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). +numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). +numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). +numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). +numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). +numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). +numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). +numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). +numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). +numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). +numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). +numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). +numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). +numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). +numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). +numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). +numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). +numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). +numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). +numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). +numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). +numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). +numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). +numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). +numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). +numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). +numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). +numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). +numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). +numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). +numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). +numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). +numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). +numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). +numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). +numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). +numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). +numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). +numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). +numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). +numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). +numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). +numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). +numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). +numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). +numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). +numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). +numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). +numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). +numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). +numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). +numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). +numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). +numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). +numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). +numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). +numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). +numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). +numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). +numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). +numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). +numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). +numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). +numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). +numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). +numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). +numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). +numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). +numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). +numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). +numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). +numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). +numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). +numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). +numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). +numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). +numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). +numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). +numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). +numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). +numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). +numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). +numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). +numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). +numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). +numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). +numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). +numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). +numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). +numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). +numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). +numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). +numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). +numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). +numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). +numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). +numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). +numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). +numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). +numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). +numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). +numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). +numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). +numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). +numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). +numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). +numeric_value_p_n(gene_snapshots, 4, datestamp). +numeric_value_p_n(insertion_mapping, 5, orientation). +numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). +numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). +table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). +table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). +table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). +table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). +table_n_type('Dmel_enzyme', 1, gene_group_id, _). +table_n_type('Dmel_enzyme', 10, gene_EC_number, _). +table_n_type('Dmel_enzyme', 11, gene_EC_name, _). +table_n_type('Dmel_enzyme', 2, gene_group_name, _). +table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). +table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). +table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). +table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). +table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). +table_n_type('Dmel_enzyme', 8, gene_symbol, _). +table_n_type('Dmel_enzyme', 9, gene_name, _). +table_n_type(allele_genetic_interactions, 1, allele_symbol, _). +table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). +table_n_type(allele_genetic_interactions, 3, interaction, _). +table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). +table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). +table_n_type(automated_gene_summaries, 2, summary_text, _). +table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). +table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). +table_n_type(best_gene_summary, 3, 'Summary_Source', _). +table_n_type(best_gene_summary, 4, 'Summary', _). +table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). +table_n_type(cDNA_clone, 2, organism_abbreviation, _). +table_n_type(cDNA_clone, 3, clone_name, _). +table_n_type(cDNA_clone, 4, dataset_metadata_name, _). +table_n_type(cDNA_clone, 5, cDNA_accession, _). +table_n_type(cDNA_clone, 6, 'EST_accession', _). +table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). +table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). +table_n_type(dataset_metadata, 3, 'Item_ID', _). +table_n_type(dataset_metadata, 4, 'Item_Name', _). +table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). +table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). +table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). +table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). +table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). +table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). +table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). +table_n_type(disease_model_annotations, 5, 'DO', _). +table_n_type(disease_model_annotations, 6, 'DO_term', _). +table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). +table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). +table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). +table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). +table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). +table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). +table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). +table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). +table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). +table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). +table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). +table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). +table_n_type(dmel_paralogs, 4, 'Location', _). +table_n_type(dmel_paralogs, 5, 'Strand', _). +table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). +table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). +table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). +table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). +table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). +table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). +table_n_type(entity_publication, 1, entity_id, _). +table_n_type(entity_publication, 2, entity_name, _). +table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). +table_n_type(entity_publication, 4, 'PubMed', _). +table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). +table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). +table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). +table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). +table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). +table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). +table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). +table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). +table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). +table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). +table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). +table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). +table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). +table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). +table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). +table_n_type(fbgn_gleanr, 2, gene_symbol, _). +table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_gleanr, 4, 'GLEANR', _). +table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). +table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). +table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). +table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). +table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). +table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). +table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). +table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). +table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). +table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). +table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). +table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). +table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). +table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). +table_n_type(gene_group, 1, 'FB_group', 'FBgg'). +table_n_type(gene_group, 2, 'FB_group_symbol', _). +table_n_type(gene_group, 3, 'FB_group_name', _). +table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). +table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_map_table, 1, organism_abbreviation, _). +table_n_type(gene_map_table, 2, current_symbol, _). +table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). +table_n_type(gene_map_table, 4, recombination_loc, _). +table_n_type(gene_map_table, 5, cytogenetic_loc, _). +table_n_type(gene_map_table, 6, sequence_loc, _). +table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). +table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). +table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). +table_n_type(gene_rpkm_matrix, 4, gene_type, _). +table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). +table_n_type(gene_rpkm_report, 1, 'Release_ID', _). +table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). +table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). +table_n_type(gene_rpkm_report, 12, 'Count_used', _). +table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). +table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). +table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). +table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). +table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). +table_n_type(gene_rpkm_report, 9, 'Bin_value', _). +table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). +table_n_type(gene_snapshots, 2, 'GeneSymbol', _). +table_n_type(gene_snapshots, 3, 'GeneName', _). +table_n_type(gene_snapshots, 4, datestamp, _). +table_n_type(gene_snapshots, 5, gene_snapshot_text, _). +table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). +table_n_type(genomic_clone, 2, organism_abbreviation, _). +table_n_type(genomic_clone, 3, clone_name, _). +table_n_type(genomic_clone, 4, accession, _). +table_n_type(insertion_mapping, 1, insertion_symbol, _). +table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). +table_n_type(insertion_mapping, 3, genomic_location, _). +table_n_type(insertion_mapping, 4, range, _). +table_n_type(insertion_mapping, 5, orientation, _). +table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). +table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). +table_n_type(organism_list, 1, genus, _). +table_n_type(organism_list, 2, species, _). +table_n_type(organism_list, 3, abbreviation, _). +table_n_type(organism_list, 4, common_name, _). +table_n_type(organism_list, 5, 'NCBI_taxon', _). +table_n_type(organism_list, 6, 'drosophilid?', _). +table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). +table_n_type(pathway_group, 2, 'FB_group_symbol', _). +table_n_type(pathway_group, 3, 'FB_group_name', _). +table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). +table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). +table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). +table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). +table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). +table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). +table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). +table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). +table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). +table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). +table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). +table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). +table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). +table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). +table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). +table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). +table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). +table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). +table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). +table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). +table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). +table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). +table_n_type(physical_interactions_mitab, 36, 'Negative', _). +table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). +table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). +table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). +table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). +table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). +table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). +table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). +table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). +table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). +table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). +table_n_type(physical_interactions_mitab, 9, 'Publication', _). +table_n_type(stocks, 1, stock_id, 'FBst'). +table_n_type(stocks, 2, dbxref_id, _). +table_n_type(stocks, 3, organism_id, _). +table_n_type(stocks, 4, name, _). +table_n_type(stocks, 5, uniquename, _). +table_n_type(stocks, 6, description, _). +table_n_type(stocks, 7, type_id, _). +table_n_type(stocks, 8, is_obsolete, _). +table_n_type(synonym, 1, primary_FBid, 'FBgn'). +table_n_type(synonym, 2, organism_abbreviation, _). +table_n_type(synonym, 3, current_symbol, _). +table_n_type(synonym, 4, current_fullname, _). +table_n_type(synonym, 5, fullname_synonym, _). +table_n_type(synonym, 6, symbol_synonym, _). diff --git a/metta_vspace/pyswip-12-15/flybase_json.pl b/metta_vspace/pyswip-12-15/flybase_json.pl new file mode 100755 index 00000000..99f6762f --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_json.pl @@ -0,0 +1,640 @@ + +% ```prolog + +:- use_module(library(logicmoo_utils)). + + +% facts for creating predcatres +extracted_predicate(transposon, [primaryId, symbol, sequence, url, taxonId, soTermId]). +extracted_predicate(transposon_publications, [primaryId, publications]). +extracted_predicate(transposon_synonyms, [primaryId, symbolSynonyms]). +extracted_predicate(transposon_cross_references, [primaryId, crossReferenceIds]). + +extracted_predicate(gene, [primaryId, + gene_geneId, gene_symbol, gene_url, gene_locusTag, gene_name]). + + +extracted_predicate(N,[gene_geneId,N]):- + member(M,[symbol, url, locusTag, name, synonyms]), atom_concat('gene_',M,N). + + +extracted_predicate(exon_locations, + [primaryId, + genomeLocations_assembly, + genomeLocations_gca_accession, + exons_INSDC_accession, exons_chromosome, exons_strand, + exons_startPosition, + exons_endPosition]). + +extracted_predicate(relatedSequences,[primaryId,relatedSequences_sequenceId, + relatedSequences_relationship]). + +extracted_predicate(gene_synonyms, [gene_geneId, gene_synonyms]). +%extracted_predicate(exon, [primaryId, geneId, 'INSDC_accession', chromosome, strand, startPosition, endPosition]). +extracted_predicate(metadata, [dataProvider, schemaVersion, release, genomicCoordinateSystem, dateProduced]). +%extracted_predicate(exon_locations, [ assembly, chromosome, strand, startPosition, endPosition]). + +extracted_predicate(N,[fbid,M]):- + member(M,[transposons, common_terms, major_stages, major_tissues, name, + pubs, rex_gene, stocks, expression_desc_text, images]), atom_concat('allele_',M,N). +extracted_predicate(allele_image,[fbid,images,images_imageDescription, + images_publicationId, images_pubFigure, images_permission]). +extracted_predicate(allele_image2, + [fbid,images, + imageDescription, publicationId, + pubFigure, permission]). +extracted_predicate(allele_image3, + [fbid, images_imageDescription, + images_publicationId, + images_pubFigure, images_permission]). + +wdmsg_json(G):- nop(wdmsg(G)). +note_doing(P):- wdmsg_json(P),!,call(user:P). +assert_JSON(P):- note_doing(assert_OBO(P)). + +:- ensure_loaded(flybase_main). +:- ensure_loaded(flybase_obo). + +%:- listing(assert_OBO/1). + +:- dynamic json_kv/2. + +% Base case: an empty curly structure. +mapcurly_or_list(_, {}):-!. +mapcurly_or_list(_, []):-!. +mapcurly_or_list(Pred, [H|T]) :- !, call(Pred, H), mapcurly_or_list(Pred, T). +mapcurly_or_list(Pred, {H,T}):- !, call(Pred, H), mapcurly_or_list(Pred, T). +mapcurly_or_list(Pred, {H}) :- !, call(Pred, H). + + +simple_first(R,_=AA,_=BB):-!, simple_first(R,AA,BB). +simple_first('<',AA,BB):- BB=json(_),AA\=json(_),!. +simple_first('>',AA,BB):- AA=json(_),BB\=json(_),!. +simple_first(R,AA,BB):-!, compare(R,AA,BB). + +prefix_key([O|_],Kee,Key):- atom(O), !, + prefix_key(O,Kee,Key). +prefix_key(O,Kee,Key) :- atom(O), + O\==Kee, O\==data,atomic_list_concat([O,'_',Kee],Key),!. +prefix_key(_,Key,Key). + + + +:- use_module(library(http/json)). + +load_flybase_json(_Fn,File):- + process_json_file(File). + +process_json_file(File):- atom_concat(File,'.metta_x',MXFile),process_json_file(File,MXFile). +process_json_file(_File,MXFile):- fail, exists_file(MXFile),!,process_metta_x_file(MXFile). +process_json_file(File, MXFile):- fail, exists_file(File),!, + setup_call_cleanup( + open(MXFile,write,Strm,[]), + setup_call_cleanup( + set_stream(Strm,alias(metta_x_output)), + with_option(make_metta_x,'True',process_json_file_direct(File)), + set_stream(current_output,alias(metta_x_output))), + close(Strm)), + remove_duplicates(MXFile), + process_metta_x_file(MXFile). +process_json_file(File, _):- process_json_file_direct(File),!. +process_json_file(File, MXFile):- + throw(process_json_file(File, MXFile)). + + +process_json_file_direct(File):- + setup_call_cleanup( + open(File, read, Stream,[encoding(utf8)]), + json_read(Stream, JSONDict), + close(Stream)), + process_json([],JSONDict). + +process_json(JsonString):- process_json([],JsonString),!. + + + + +process_json(O,JsonString) :- atomic(JsonString), !, + atom_json_term(JsonString, Json, []), process_json(O,Json). +process_json(O,json(Values)) :- !, process_json(O,Values). +process_json(O,K=json(Values)) :- !, process_json([K|O],Values). +process_json(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). +process_json(O,Values) :- with_json1(O,Values),!. + +with_json1(O,K=Values) :- K==driver,!, with_json1(O,Values). +with_json1(O,K=Values) :-!, with_json1([K|O],Values). +with_json1(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). + +with_json1(O,json([driver=json(Values0)])) :- !,with_json2(O,Values0),!. +with_json1(O,json(Values0)) :- is_list(Values0),!,with_json2(O,Values0),!. +with_json1(O,Val):- wdmsg(error(O=Val)),!. + +with_json2([metaData],_Values0):-!. +with_json2(O,Values):- + retractall(seen_arg(_,_)), + with_json3(O,Values), + ignore((seen_arg(_,_), + wdmsg(Values), + listing(seen_arg/2))). + +with_json3(O,Values0):- + retractall(json_kv(_,_)), + with_json4(O,Values0), + retractall(json_kv(_,_)),!. + +with_json4(O,[json(Values)]):- !, with_json4(O,Values). +with_json4(O,json(Values)):- !, with_json4(O,Values). +with_json4(O,Values0):- + predsort(simple_first,Values0,Values), + wdmsg_json(O==Values), + ignore(maplist(with_entry(O,assert),Values)). + + +with_entry(O,AR, Key=Value):-!, with_kv([Key|O],AR,Key,Value). +%with_entry(O,assert,JSON) :- !, process_json(O,JSON). +with_entry(O,AR,JSON):- wdmsg(error_with_entry(O,AR,JSON)). + +uses_id_subprops(images). +key_can_nv(M):- +member(M,[major_stages, major_tissues, name, rex_gene, insertions,transposons, + %expression_desc_text, images, + pubs, stocks]). + +is_field(Field):- extracted_predicate(_,List), \+ \+ member(Field,List),!. + +with_kv_maybe_more(_O,_AR,_Key,json([])):-!. +with_kv_maybe_more(O,AR,Key,Do):- with_kv(O,AR,Key,Do),!. + + +assert_id_about(O,Key,ID,NVAboutID):- + with_json4([Key|O],[Key=ID|NVAboutID]). + + %images= json( [ 'FBal0040476_1.jpg'= json( [ imageDescription='GAL4[Bx-MS1096].jpg', + +with_kv(O,AR,Key,json([ID=json(NVAboutID)|More])):- uses_id_subprops(Key), + %wdmsg_json(cr1(Key)=ID), + atom(ID),!, + decl_type(ID,Key), + with_kv(O,AR,Key,ID), + assert_id_about(O,Key,ID,NVAboutID), + with_kv_maybe_more(O,AR,Key,json(More)). + +with_kv(O,AR,Key,json([ID=Value|More])):- key_can_nv(Key), + atom(Value), + % prefix_key(O,ID,Field), \+ is_field(Field),!, + %prefix_key(O,Value,VField), \+ is_field(VField),!, + decl_type(ID,Key), + with_kv(O,AR,Key,ID), + %atom_concat(Key,'_name',Pred), + %Pred = object_name, + assert_JSON([name,ID,Value]), + with_kv_maybe_more(O,AR,Key,json(More)). + +with_kv(O,AR,OK,Key=Values):- !, with_kv([OK|O],AR,Key,Values). +with_kv(O,AR,Key,json(Values)):- !, with_kv(O,AR,Key,Values). +with_kv(O,AR,Key,Value):- is_list(Value),Value\==[],!, + maplist(with_kv(O,AR,Key),Value). +with_kv(O,AR,Kee,Value):- + prefix_key(O,Kee,Key), + retractall(json_kv(Key,_)), + KV = json_kv(Key,Value), + decl_seen(Value,Key), + Do =.. [AR,KV], + call(Do), + ignore((AR==assert, + %wdmsg_json(cr(Key)=Value), + check_ready(Key))). + +check_ready(Key):- + forall((extracted_predicate(P,List),memberchk(Key,List)), + (length(List,Len), + ignore((findall(Arg,(member(K,List),json_kv(K,Arg)),ArgList), + length(ArgList,Len), + Fact = [P|ArgList], + assert_JSON(Fact), + maplist(decl_type,ArgList,List))))). +% Rows 937,381,148 +:- dynamic(arg_typed/2). +:- dynamic(seen_arg/2). + +decl_type(Arg,Type):- retractall(seen_arg(Arg,_)),arg_typed(Arg,Type),wdmsg_json(arg_typed(Arg,Type)),!. +decl_type(Arg,Type):- assert(arg_typed(Arg,Type)),!,assert_JSON([Type,Arg]). +decl_seen(Arg,_):- seen_arg(Arg,_),!. +decl_seen(Arg,_):- arg_typed(Arg,_),!. +decl_seen(Arg,Type):- assert(seen_arg(Arg,Type)),!. + + + + +err +:- process_json(json([metaData= json( [ dataProvider='FlyBase', + publications=['PMID:35266522'], schemaVersion='0.4.0',release=fb_2023_04, + genomicCoordinateSystem='1-start, fully-closed', + dateProduced='2023-07-25T03:20:14+00:00']), + data= [ json( [ primaryId='FBtr0070001', + symbol='tRNA:Pro-CGG-1-1-RA', + sequence='GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC', + url='http://flybase.org/reports/FBtr0070001.html', + symbolSynonyms=['CR32826-RA','tRNA:CR32826-RA'], taxonId='NCBITaxon:7227',soTermId='SO:0000253', + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=20025099,endPosition=20025170])]])], + gene= json( [ geneId='FBgn0052826', + symbol='tRNA:Pro-CGG-1-1', + url='http://flybase.org/reports/FBgn0052826.html', + locusTag='Dmel_CR32826', + synonyms=['tRNA:P:CGG:AE002611'], + name='transfer RNA:Proline-CGG 1-1']), + publications=['PMID:26673694']]), + json( [ primaryId='FBtr0070292', + symbol='snoRNA:M-RA', + sequence='AATTCAATGATTTCAACTTATTCTAATACACAC', + url='http://flybase.org/reports/FBtr0070292.html', taxonId='NCBITaxon:7227',soTermId='SO:0000275', + crossReferenceIds=['REFSEQ:NR_002093.1'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), + startPosition=1482492,endPosition=1482590])]])], + gene= json( [ geneId='FBgn0044508', + symbol='snoRNA:M', + url='http://flybase.org/reports/FBgn0044508.html', + locusTag='Dmel_CR32807', synonyms=['CR32807'],name='snoRNA:M'])]), + json( [ primaryId='FBtr0308931', + symbol='lncRNA:CR33218-RC', + sequence='ACGAAATCAATAAACATTTGTACCTTT', + url='http://flybase.org/reports/FBtr0308931.html', + symbolSynonyms=['CR33218-RC'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', + crossReferenceIds=['REFSEQ:NR_047742.1'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=2330159,endPosition=2330355]), + json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=2330413,endPosition=2330826])]])], + gene= json( [ geneId='FBgn0053218', + symbol='lncRNA:CR33218', + url='http://flybase.org/reports/FBgn0053218.html', + locusTag='Dmel_CR33218', + synonyms=['CG2854','CG33218','CR33218','CT9762'], + name='long non-coding RNA:CR33218'])]), + json( [ primaryId='FBtr0070634', symbol='lncRNA:roX1-RA',sequence='TTGTAGAACAATTACTATA', + url='http://flybase.org/reports/FBtr0070634.html', + symbolSynonyms=['roX1-RA','roX1-RA....'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', + crossReferenceIds=['REFSEQ:NR_002098.2'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), + startPosition=3858940,endPosition=3862697])]])], + gene= json( [ geneId='FBgn0019661', + symbol='lncRNA:roX1', + url='http://flybase.org/reports/FBgn0019661.html', + locusTag='Dmel_CR32777', + synonyms= [ 'BcDNA:GH10432', 'CR32777','EG:EG0002.2','RoX1', + 'chrX:3706836..3706970',rox1], + name='long non-coding RNA on the X 1']), + publications=['PMID:10445033','PMID:12446910','PMID:9038336','PMID:9038337']])] ])). + + + + +err +:- process_json([],' +{ + "metaData": { + "dataProvider": "FlyBase", + "publications": [ + "PMID:35266522" + ], + "schemaVersion": "0.4.0", + "release": "fb_2023_04", + "genomicCoordinateSystem": "1-start, fully-closed", + "dateProduced": "2023-07-25T03:20:14+00:00" + }, + "data": [ + { + "primaryId": "FBtr0070001", + "symbol": "tRNA:Pro-CGG-1-1-RA", + "sequence": "GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC", + "url": "http://flybase.org/reports/FBtr0070001.html", + "symbolSynonyms": [ + "CR32826-RA", + "tRNA:CR32826-RA" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0000253", + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 20025099, + "endPosition": 20025170 + } + ] + } + ], + "gene": { + "geneId": "FBgn0052826", + "symbol": "tRNA:Pro-CGG-1-1", + "url": "http://flybase.org/reports/FBgn0052826.html", + "locusTag": "Dmel_CR32826", + "synonyms": [ + + "tRNA:P:CGG:AE002611" + ], + "name": "transfer RNA:Proline-CGG 1-1" + }, + "publications": [ + "PMID:26673694" + ] + }, + { + "primaryId": "FBtr0070292", + "symbol": "snoRNA:M-RA", + "sequence": "AATTCAATGATTTCAACTTATTCTAATACACAC", + "url": "http://flybase.org/reports/FBtr0070292.html", + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0000275", + "crossReferenceIds": [ + "REFSEQ:NR_002093.1" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "-", + "startPosition": 1482492, + "endPosition": 1482590 + } + ] + } + ], + "gene": { + "geneId": "FBgn0044508", + "symbol": "snoRNA:M", + "url": "http://flybase.org/reports/FBgn0044508.html", + "locusTag": "Dmel_CR32807", + "synonyms": [ + "CR32807" + ], + "name": "snoRNA:M" + } + }, + { + "primaryId": "FBtr0308931", + "symbol": "lncRNA:CR33218-RC", + "sequence": "ACGAAATCAATAAACATTTGTACCTTT", + "url": "http://flybase.org/reports/FBtr0308931.html", + "symbolSynonyms": [ + "CR33218-RC" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0001877", + "crossReferenceIds": [ + "REFSEQ:NR_047742.1" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 2330159, + "endPosition": 2330355 + }, + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 2330413, + "endPosition": 2330826 + } + ] + } + ], + "gene": { + "geneId": "FBgn0053218", + "symbol": "lncRNA:CR33218", + "url": "http://flybase.org/reports/FBgn0053218.html", + "locusTag": "Dmel_CR33218", + "synonyms": [ + "CG2854", + "CG33218", + "CR33218", + "CT9762" + ], + "name": "long non-coding RNA:CR33218" + } + }, + { + "primaryId": "FBtr0070634", + "symbol": "lncRNA:roX1-RA", + "sequence": "TTGTAGAACAATTACTATA", + "url": "http://flybase.org/reports/FBtr0070634.html", + "symbolSynonyms": [ + "roX1-RA" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0001877", + "crossReferenceIds": [ + "REFSEQ:NR_002098.2" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "-", + "startPosition": 3858940, + "endPosition": 3862697 + } + ] + } + ], + "gene": { + "geneId": "FBgn0019661", + "symbol": "lncRNA:roX1", + "url": "http://flybase.org/reports/FBgn0019661.html", + "locusTag": "Dmel_CR32777", + "synonyms": [ + "BcDNA:GH10432", + "CR32777", + "EG:EG0002.2", + "RoX1", + "chrX:3706836..3706970", + "rox1" + ], + "name": "long non-coding RNA on the X 1" + }, + "publications": [ + "PMID:10445033", + "PMID:12446910", + "PMID:9038336", + "PMID:9038337" + ] + } + ] + } +}'). + +err +:- process_json([],' +{ + "metaData": { + "dataProvider": "FlyBase", + "title": "Frequently Used GAL4 Table", + "dateProduced": "2023-07-24T23:20:12-04:00", + "databaseRelease": "2023_04", + "annotationRelease": "R6.53" + }, + "data": [ + + {"driver": { + "name": "Scer\\GAL4dpp.blk1", + "fbid": "FBal0040480", + "images": { + "FBal0040480_1.png": { + "imageDescription": "GAL4[dpp.blk1].png", + "publicationId": "FBrf0218242", + "pubFigure": "Figure 5A", + "permission": "" + } + }, + "pubs": { + "FBrf0074522": "Staehling-Hampton et al., 1994, Cell Growth Diffn 5(6): 585--593", + "FBrf0076140": "Wilder and Perrimon, 1995, Development 121(2): 477--488", + "FBrf0084454": "Treisman and Rubin, 1995, Development 121(11): 3519--3527", + "FBrf0086426": "Grimm and Pflugfelder, 1996, Science 271(5255): 1601--1604", + "FBrf0087557": "Lecuit et al., 1996, Nature 381(6581): 387--393", + "FBrf0087626": "Nellen et al., 1996, Cell 85(3): 357--368", + "FBrf0087630": "Ng et al., 1996, Nature 381(6580): 316--318", + "FBrf0088035": "Burke and Basler, 1996, Development 122(7): 2261--2269", + "FBrf0088295": "Kim et al., 1996, Nature 382(6587): 133--138", + "FBrf0089604": "Brook and Cohen, 1996, Science 273(5280): 1373--1377", + "FBrf0089753": "Morimura et al., 1996, Dev. Biol. 177(1): 136--151", + "FBrf0091093": "Johnston and Schubiger, 1996, Development 122(11): 3519--3529", + "FBrf0091111": "Leevers et al., 1996, EMBO J. 15(23): 6584--6594", + "FBrf0091167": "Shen and Mardon, 1997, Development 124(1): 45--52", + "FBrf0091298": "Gonzalez-Crespo and Morata, 1996, Development 122(12): 3921--3928", + "FBrf0091412": "Theisen et al., 1996, Development 122(12): 3939--3948", + "FBrf0092493": "Chanut and Heberlein, 1997, Development 124(2): 559--567", + "FBrf0092641": "Neumann and Cohen, 1997, Development 124(4): 871--880", + "FBrf0093060": "Aplin and Kaufman, 1997, Mech. Dev. 62(1): 51--60", + "FBrf0251844": "Matsuda et al., 2021, Nat. Commun. 12(1): 6435", + "FBrf0252066": "Kinsey et al., 2021, G3 (Bethesda) 11(12): jkab350", + "FBrf0253453": "Lu et al., 2022, Int. J. Mol. Sci. 23(9): 4543", + "FBrf0253792": "Akiyama et al., 2022, Dev. Biol. 488: 91--103", + "FBrf0255082": "Inoshita et al., 2022, iScience 25(12): 105476", + "FBrf0255366": "Bharti et al., 2023, Proc. Natl. Acad. Sci. U.S.A. 120(2): e2211189119", + "FBrf0256654": "He et al., 2023, Development 150(11): dev201297" + }, + "rex_gene": { + "FBgn0000490": "dpp" + }, + "common_terms": "A/P boundary", + "major_stages": { + "FBdv00005336": "larval stage" + }, + "major_tissues": { + "FBbt00111520": "anterior-posterior compartment boundary of imaginal disc", + "FBbt00001769": "eye disc morphogenetic furrow" + }, + "transposons": { + "FBtp0000365": "P{GAL4-dpp.blk1}" + }, + "expression_desc_text": "Drives expression at the anterior/posterior compartment boundary of imaginal discs, and at the morphogenetic furrow of the eye disc.", + "stocks": { + "FBst0305049": "106380", + "FBst0001553": "1553", + "FBst0067066": "67066", + "FBst0084296": "84296", + "FBst0084316": "84316", + "FBst0084337": "84337", + "FBst0093385": "93385" + } + } + }, + { + "driver": { + "name": "Scer\\GAL4Ir25a.PA", + "fbid": "FBal0249373", + "images": null, + "pubs": { + "FBrf0212725": "Abuin et al., 2011, Neuron 69(1): 44--60", + "FBrf0215822": "Silbering et al., 2011, J. Neurosci. 31(38): 13357--13375", + "FBrf0221182": "Min et al., 2013, Proc. Natl. Acad. Sci. U.S.A. 110(14): E1321--E1329", + "FBrf0230271": "Chen et al., 2015, Nature 527(7579): 516--520", + "FBrf0232388": "Enjin et al., 2016, Curr. Biol. 26(10): 1352--1358", + "FBrf0236232": "Frank et al., 2017, Curr. Biol. 27(15): 2381--2388.e4", + "FBrf0236716": "Chen and Amrein, 2017, Curr. Biol. 27(18): 2741--2750.e4", + "FBrf0236934": "Rist and Thum, 2017, J. Comp. Neurol. 525(18): 3865--3889", + "FBrf0237619": "Lee et al., 2018, Neuron 97(1): 67--74.e4", + "FBrf0237676": "Ahn et al., 2017, eLife 6: e30115", + "FBrf0238151": "Steck et al., 2018, eLife 7: e31625", + "FBrf0240321": "SƔnchez-AlcaƱiz et al., 2018, Nat. Commun. 9(1): 4252", + "FBrf0240352": "Sun et al., 2018, eLife 7: e39249", + "FBrf0241429": "Chai et al., 2019, Nat. Commun. 10(1): 643", + "FBrf0242503": "Lei et al., 2019, Front. Physiol. 10: 556", + "FBrf0246007": "Alpert et al., 2020, Curr. Biol. 30(12): 2275--2288.e5", + "FBrf0247159": "Weaver et al., 2020, G3 (Bethesda) 10(11): 4147--4158", + "FBrf0251811": "Dhakal et al., 2021, Commun. Biol. 4(1): 1281", + "FBrf0253093": "Trisal et al., 2022, J. Neurosci. 42(14): 2930--2941", + "FBrf0253272": "Task et al., 2022, eLife 11: e72599", + "FBrf0255204": "Omelchenko et al., 2022, Front. Mol. Neurosci. 15: 1023492", + "FBrf0256676": "Shrestha et al., 2023, EMBO Rep. 24(6): e56319", + "unattributed": null + }, + "rex_gene": { + "FBgn0031634": "Ir25a" + }, + "common_terms": "anterior cold cell, ACc, bitter sensing GRN,", + "major_stages": { + "FBdv00005336": "larval stage", + "FBdv00005369": "adult stage" + }, + "major_tissues": { + "FBbt00049613": "bitter-sensing neuron", + "FBbt00005923": "hygrosensory neuron", + "FBbt00047485": "calcium-sensing neuron of labellar S-type taste bristle", + "FBbt00048209": "bitter-sensing neuron of the leg", + "FBbt00049720": "non-aristal sensory neuron VP3", + "FBbt00051293": "adult thermosensory neuron", + "FBbt00110990": "adult hygrosensory neuron Ir40a" + }, + "transposons": { + "FBtp0057158": "P{Ir25a-GAL4.A}" + }, + "expression_desc_text": "Drives expression in a subset of bitter-sensing, hygrosensory, and cold-sensing thermosensory neurons in the labellum, legs, arista, sacculus, antenna, labrum, and larval head sensory organs", + "stocks": { + "FBst0041728": "41728" + } + } + } + ] +}'). + + +json1:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/genes/ncRNA_genes_fb_2023_04.json'). +% 51,290,751 inferences, 8.285 CPU in 8.289 seconds (100% CPU, 6190948 Lips) + +json2:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/insertions/fu_gal4_table_fb_2023_04.json'). +% 27,108,104 inferences, 4.454 CPU in 4.456 seconds (100% CPU, 6085908 Lips) + + + + diff --git a/metta_vspace/pyswip-12-15/flybase_learn.pl b/metta_vspace/pyswip-12-15/flybase_learn.pl new file mode 100755 index 00000000..3154f947 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_learn.pl @@ -0,0 +1,2286 @@ + +:- + multifile(table_n_type/3), + multifile(load_state/2), + multifile(is_loaded_from_file_count/2), + multifile(fb_pred/2), + multifile(fb_arg_type/1), + multifile(fb_arg_table_n/3), + multifile(fb_arg/1), + multifile(done_reading/1). + +%./KBs/SUMO-OBO/gene-merged-SUMO.kif +% +%FBbt_00051628 + +concept_type(Arg,Type):- + fb_arg(Arg), + fb_arg_table_n(Arg,Fn,N), + table_n_type(Fn,N,Type). + +good_concept(E1):- var(E1),!,table_columns(F1,P1),nth1(N1,P1,E2),(E1=E2;E1=nth(N1,F1)). +good_concept(E1):- symbol(E1),!, is_good_symbol_name(E1). +good_concept(E1):- number(E1),!, E1>300. +good_concept(listOf(E1,_)):- good_concept(E1),symbol(E1). +good_concept(listOf(E1)):- good_concept(E1),symbol(E1). + +%:- abolish(maybe_corisponds/2). +:- dynamic(maybe_corisponds/2). + +is_good_symbol_name(E1):- symbol(E1), symbol_length(E1,L),L>=2, \+ symbol_number(E1,_). + +fb_pred_g(F,A):-fb_pred(F,A), \+ skipped_anotations(F), A>0, A<20. + +mine_corisponds(Concept1,Corispondance):- + fb_arg_table_n(Concept1,Fn1,Nth1),is_good_symbol_name(Concept1), + fb_arg_table_n(Concept1,Fn2,Nth2), + (Fn1+Nth1)@>(Fn2+Nth2), + tables_can_join(Fn1,Fn2), + once((table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), + table_colnum_type(Fn2,Nth2,Type2),nonvar(Type2))), + (maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)) + = Corispondance). + +mine_overlaps:- + retractall(maybe_corisponds(_,_)), + time(once(mine_overlaps1)), + skip(mine_overlaps2). + +fbel:- ensure_loaded('flybase.metta.qlf'). +mine_overlaps1:- + for_all(mine_corisponds(Concept1,How), assert_progress(mine_overlaps1(Concept1),How)). + +mine_overlaps2_slow:- + % for_all(mine_typelevel_overlaps,true), + for_all(mine_symbolspace_overlaps,true). + +mine_typelevel_overlaps:- + for_all(mine_typelevel_overlaps(Concept1,SC1,SC2), + assert_progress(mine_typelevel_overlaps(Concept1),maybe_corisponds(SC1,SC2))). + +tables_can_join(Fn1,Fn2):- Fn1@>Fn2, can_join_using(Fn1),can_join_using(Fn2). + +can_join_using(V):- var(V),!. +can_join_using(fbgn_exons2affy1_overlaps):- !, fail. +can_join_using(fbgn_exons2affy2_overlaps):- !, fail. +can_join_using(_). + +fb_data_template(T1,Data):- + fb_pred_g(T1,Arity), Arity>1,Arity<20,functor(Data,T1,Arity), + current_predicate(T1/Arity). +fb_data(T1,Data):- fb_data_template(T1,Data),call(Data). + +:- multifile(fb_arg_table_n/3). +fb_arg_table_n(Arg,Fn,N):- fb_data(Fn,Data),arg(N,Data,Arg). + +querymaker2(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + xref_class(CrossType), + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T2,CN2,CrossType), + T1\==T2, + fb_data_template(T1,Data1), + fb_data_template(T2,Data2), + arg(CN1,Data1,Inst),arg(CN2,Data2,Inst), + once((Data1,Data2,is_good_symbol_name(Inst), + + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + arg(Nth1,Data1,V1), + arg(Nth2,Data2,V2), CN1\==Nth1,CN2\==Nth2)), + sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), + reverse(Sorted,SortedR), + maplist(arg(1),SortedR,Sorted1), + maplist(arg(2),SortedR,Sorted2), + + atomic_list_concat(Sorted1,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP| Sorted2]], + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + \+ \+ ((once((Data1,Data2)),write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl. + + +querymaker:- + forall(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query), + write_src(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query))). +querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + xref_class(CrossType), + fb_data_template(T1,Data1), + fb_data_template(T2,Data2), + T1\==T2, + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T2,CN2,CrossType), + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + arg(Nth1,Data1,V1),arg(CN1,Data1,Inst), + arg(Nth2,Data2,V2),arg(CN2,Data2,Inst), + sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), + reverse(Sorted,SortedR), + maplist(arg(1),SortedR,Sorted1), + maplist(arg(2),SortedR,Sorted2), + atomic_list_concat(Sorted1,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP|Sorted2]], + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + \+ \+ ((once((Data1,Data2, Inst\=="")),write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl. + +querymaker3(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + + + call_nth(fb_data(T1,Data1),3), arg(CN1,Data1,Inst), is_good_symbol_name(Inst), + fb_data_template(T2,Data2),T1\==T2, + arg(CN2,Data2,Inst), + once(Data2), + arg(Nth1,Data1,V1), Nth1\==CN1, + arg(Nth2,Data2,V2), Nth2\==CN2, + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + sort([Type1,CrossType,Type2],Sorted), + reverse(Sorted,SortedR), + atomic_list_concat(SortedR,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP,Inst, V1, V2 ]], + + \+ \+ + ((user:once((Data1,Data2)), + + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + ((write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl)). + +interesting_inst(II):- \+ var(II), \+ number(II), II\=='',II\=="". + +same_values(Inst,T1,K1,CN1,T2,K2,CN2):- + fb_pred_g(T1,Arity1),Arity1>1,Arity1<10, + fb_pred_g(T2,Arity2),Arity2>1,Arity2<10, + functor(Data1,T1,Arity1), + functor(Data2,T2,Arity2), + arg(CN1,Data1,Inst), + arg(CN2,Data2,Inst), + ((T1,CN1)\==(T2,CN2)), + call_nth((Data1,Data2),Nth), + (Nth=2->!;true), + ignore(table_colnum_type(T1,CN1,K1)), + ignore(table_colnum_type(T2,CN2,K2)). + +xref_class(CrossType):- no_repeats(CrossType,rep_xref_class(CrossType)). +fb_class(T):- no_repeats(T,table_colnum_type(_,_,T)). + +fb_inst_class(I,IT):- no_repeats(IIT,(fb_data(T,Data),arg(Nth,Data,I),table_colnum_type(T,Nth,IT),(IIT=I+IT))). +rep_xref_class(CrossType):- table_colnum_type(T1,_,CrossType), table_colnum_type(T2,_,CrossType),T1\==T2. + +mine_typelevel_overlaps(Concept1,'ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)):- + + %fail, % Skip over simple type named things + + Type1=Concept1,Type2=Concept1, + table_columns(Fn1,Atom1), table_columns(Fn2,Atom2), + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), + Fn1@>Fn2, nth1(Nth1,Atom1,Concept1), + good_concept(Concept1), + once((nth1(Nth2,Atom2,Concept1),length(Atom1,Arity1),length(Atom2,Arity2))). + +mine_symbolspace_overlaps:- + fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), + once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), + tables_can_join(Fn1,Fn2), + call(Atom1), arg(Nth1,Atom1,Concept1),good_concept(Concept1), arg(Nth2,Atom2,Concept1),call(Atom2))), + once(( + table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), + table_colnum_type(Fn2,Nth2,Type2),nonvar(Type1))), + assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/))). + +mine_unif_overlap:- + forall((fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), + once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), + arg(Nth1,Atom1,Concept1), arg(Nth2,Atom2,Concept1), + call(Atom1),call(Atom2), + interesting_to_unify(Concept1)))), + + assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Nth2,Fn2/*Arity2*/)))). + +interesting_to_unify(Concept1):- string(Concept1),!,symbol_length(Concept1,L),L>3. +interesting_to_unify(Concept1):- good_concept(Concept1). +interesting_to_unify(Number):- number(Number),Number>1000. + + +fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- !, + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), + tables_can_join(Fn1,Fn2), + between(1,Arity1,Nth1),Nth1<20,between(1,Arity2,Nth2),Nth2<20, + (Fn1==Fn2-> (Nth1>Nth2); true). + +fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2),Fn1@>Fn2, + mine_typelevel_overlaps(_,'ConceptMapFn'(_Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(_Type2,Nth2,Fn2/*Arity2*/)). + +table_colnum_type(Fn,Nth,Type):- table_n_type(Fn,Nth,TypeC,TypeB),(nonvar(TypeB)->Type=TypeB;Type=TypeC). + +synth_conj(QV,(Atom1),(Atom2)):- + maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1),'ConceptMapFn'(Type2,Nth2,Fn2)), + make_symbol(Fn1,Nth1,Atom1,Arg1), + make_symbol(Fn2,Nth2,Atom2,Arg2), + Fn1\=@=Fn2, + skip(Type1),skip(Type2), + Arg1=Arg2,QV=Arg1. + +synth_query(Len,Query):- synth_query(_,Len,Query). + +synth_query(_,1,[Atom]):- !, make_symbol(Atom). +synth_query(QV,N,[Q1,Q2|Query]):- + M is N -1, + synth_conj(QV,Q1,Q2), + (M>1 -> dif(QV,QV2) ; true), + synth_query(QV2,M,[Q2|Query]), + all_dif_functors([Q1,Q2|Query]). + +all_dif_functors(List):- \+ (select(Q1,List,Rest),member(Q2,Rest),functor(Q1,F1,_),functor(Q2,F2,_), F1==F2, \+ (ok_if_dupped(F1))). + +make_symbol(Atom):- fb_pred_g(F,A),functor(Atom,F,A). +make_symbol(Fn,Nth,Atom,Arg):- fb_pred_g(Fn,Arity),functor(Atom,Fn,Arity),arg(Nth,Atom,Arg). + +ok_if_dupped(best_gene_summary). + +try_overlaps:- try_overlaps(5). + +try_overlaps(N):- + synth_query(N,Query), + \+ \+ (call_match(Query), + pp_fb(grounded=Query), + ignore(maybe_english(Query))),nl,nl, + AQ = [and|Query], + pp_fb('!'(match('&flybase',AQ,AQ))),nl,nl,nl. + +no_english(fbrf_pmid_pmcid_doi,_). +no_english(physical_interactions_mitab,8). + +maybe_english(Query):- + extract_concepts(Query,Concepts),!, + ignore((maybe_english(Query,Concepts))),!. + +maybe_english(_Query,Concepts):- select(C,Concepts,Rest),is_englishy(C),member(C2,Rest),is_englishy(C2),!, pp_fb(english=[C,C2]). +maybe_english(_Query,Concepts):- pp_fb(concepts=Concepts), maplist(some_english,Concepts). + +is_englishy(C):- \+ symbol(C), \+ string(C), !, fail. +is_englishy(C):- split_string(C, ". ", " ", [_,_,_|_]). +is_englishy(C):- symbol_contains(C,". "). + +some_english(Term):- + ignore((fb_arg_table_n(C,Fn1,Nth1), \+ no_english(Fn1,Nth1),is_englishy(C), + make_symbol(Fn1,Nth1,Atom,English), + arg(Nth2,Atom,Term),Nth2\==Nth1, + call(Atom),English\=='',!, + pp_fb(Term=English))). + +extract_concepts(Query,Concepts):- + findall(C,(sub_term(C,Query),symbolic(C),good_concept(C)),L), + predsort(longest_first,L,Concepts). + +longest_first(R,A,B):- into_len(A,L1),into_len(B,L2),compare(R,L2,L1). +into_len(A,0):- var(A),!. +into_len(A,L):- \+ string(A), !, sformat(S,"~w",[A]),into_len(S,L). +into_len(A,0+A):- symbol_contains(A," "). +into_len(A,L+A):- symbol_length(A,L1), (L1 == 11 -> L = 0 ; L is - L1). + +assert_progress(Concept,Atom):- Atom=..[OP,A1,A2], A1@>A2,!,AtomSwp=..[OP,A2,A1],!,assert_progress(Concept,AtomSwp). +assert_progress(Concept,Atom):- call(Atom),!,pp_fb(already(Concept)=Atom). +assert_progress(Concept,Atom):- pp_fb(assert_progress(Concept)=Atom),assert(Atom). + + + +loaded_from_file_count(X):- flag(loaded_from_file_count,X,X). +incr_file_count(X):- flag(loaded_from_file_count,X,X+1), flag(total_loaded_symbols,TA,TA+1). + +should_cache:- fail, loaded_from_file_count(X), option_else(max_disk_cache,Num,1000), X==Y. +should_fix_args :- fail, \+ should_sample. +should_sample :- !, fail. +should_sample :- should_show_data(_),!. +should_sample :- + once(option_value(samples_per_million,Fifty);Fifty=50), loaded_from_file_count(X), Y is X mod 1_000_000,!, Y >= 0, Y =< Fifty,!. +should_show_data(X):- loaded_from_file_count(X),!, + once((X=<13,X>=10); (X>0,(0 is X rem 1_000_000))), + format(user_error,'~N',[]), + format(user_output,'~N',[]),!, + heartbeat. +should_show_data(X):- nb_current(loading_file,F),F\==[],symbol_concat(_,'.obo',F), + loaded_from_file_count(X),Y is X mod 100_000, Y=<15,Y>=10. + + +pfb:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase_tiny). + +pfb1:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase(100_000)). + +pfb2:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase(1_000_000)). + +pfb3:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase_full). + + +% Convert a function and its arguments into a compound term +into_datum(Fn, [D|DataL], Data):- + (nb_current(pred_va, 'True') -> Data =.. [Fn,D,DataL]; Data =.. [Fn,D|DataL]). + +% Create a new assertion from old data +make_assertion4(Fn, Cols, NewData, OldData):- fail, + OldData=Cols, + NewData =..[Fn|Cols],!. +make_assertion4(Fn, Cols, NewData, OldData):- + into_datum(Fn, Cols, OldData), + OldData =.. [Fn|Args], + % skip(if_t(var(ArgTypes), must_det_ll_r((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), + maybe_fix_args(Fn, Args, NewArgs), + maybe_sample(Fn, NewArgs), + NewData =.. [Fn|NewArgs], !. + +maybe_fix_args( Fn,Args,NewArgs):- do_fix_fast_args( Fn,1,Args,NewArgs),!. +maybe_fix_args( Fn,Args,NewArgs):- should_fix_args, + nb_current(fb_argtypes,ArgTypes), fix_list_args(Fn,ArgTypes,Args,NewArgs),!. +maybe_fix_args(_Fn,Args,Args). + +do_fix_fast_args( Fn,Nth,[A|Args],[New|NewArgs]):- maybe_fix_columns_nth(Fn,Nth,A,New), + Nth2 is Nth+1, !, do_fix_fast_args( Fn,Nth2,Args,NewArgs). +do_fix_fast_args(_,_,A,A). + +maybe_fix_columns_nth(Fn,Nth,A,New):- fix_columns_nth(Fn,Nth), fix_concept(A,New),!. +maybe_fix_columns_nth(_,_,A,A). + + +cleanup_arities:- for_all((fb_pred(F,2),fb_pred(F,N),N>2),retract(fb_pred(F,2))). + + + + +:- discontiguous column_names_ext/2. +:- discontiguous primary_column/2. + +must_det_ll_r((G1,G2)):- !, once(G1),must_det_ll_r(G2). +must_det_ll_r(G):- call(G). + +% Safely executes the given Goal and prints any exception raised. +% Usage: safe(+Goal, +Info). +safe(Goal, Info) :- + % Try to call Goal. If an exception is raised, unify Exception with the exception. + catch(Goal, Exception, + % If an exception is raised, portray the clause (Info :- Goal) + % along with the exception, then rethrow the exception. + (catch_ignore(portray_clause(exception:Exception:(Info:- Goal))), throw(Exception)) + ). +% Safely executes the given Goal and prints any exception raised. +% Usage: safe(+Goal). +safe(Goal) :- safe(Goal,safe/1). + + +skipped_anotations(fbgn_exons2affy1_overlaps). +skipped_anotations(fbgn_exons2affy2_overlaps). +skipped_anotations(gene_rpkm_matrix). +skipped_anotations(dmel_gene_sequence_ontology_annotations). +%kipped_anotations(fbgn_annotation_ID). +skipped_anotations(transposon_sequence_set). + +gc_now:- set_option_value(gc,true), garbage_collect,garbage_collect_atoms,garbage_collect_clauses. + +extreme_debug(_). + +numbervars_w_singles(P):- term_singletons(P, Vars), + numbervars(Vars,260,_,[attvar(bind),singletons(false)]), + numbervars(P,14,_,[attvar(bind),singletons(true)]). + + + +pp_fb(P):- format("~N "), \+ \+ (numbervars_w_singles(P), pp_fb1(P)),flush_output. +pp_fb1(P):- write_src(P),!,nl. +:- if(current_predicate(pp_ilp/1)). +pp_fb1(P):- pp_as(P),!,format("~N"),pp_ilp(P),!. +:- endif. +pp_fb1(P):- pp_as(P),!. +pp_fb1(P):- print(P),!,nl. +pp_fb1(P):- fbdebug1(P),!,nl. + + +fbgn_exons2affy1_overlaps_each(Gene,At):- + fb_pred(fbgn_exons2affy1_overlaps, Arity), + functor(Pred,fbgn_exons2affy1_overlaps, Arity), + arg(1,Pred,Gene), + call(Pred), + arg(N,Pred,At),N>1. + +fbgn_exons2affy1_overlaps_start_end(Gene,Start,End):- + fbgn_exons2affy1_overlaps_each(Gene,At),into_start_end(At,Start,End). + + +into_start_end(s_e(S,E),S,E):- nonvar(S),!. +into_start_end('..'(S,E),S,E):- nonvar(S),!. +into_start_end(at(S,E),S,E):- nonvar(S),!. +into_start_end(At,S,E):- atomic_list_concat([SS,EE],'..',At), + into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). +into_start_end(At,S,E):- atomic_list_concat([SS,EE],'_at_',At), + into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). + + +%into_fb_term(Atom,Term):- compound(Atom),!,Term=Atom. +into_fb_term(Atom,Term):- \+ atom(Atom), \+ string(Atom),!,Term=Atom. +into_fb_term(Atom,'..'(S,E)):- into_start_end(Atom,S,E),!. +into_fb_term(Atom,Term):- into_number_or_symbol(Atom,Term),!. + +into_number_or_symbol(Atom,Term):- atomic_list_concat(List,'|',Atom),List\=[_],!,maplist(into_fb_term,List,Term). +%into_number_or_symbol(Atom,Term):- atom_number(Atom, Term),!,Term= Term. +into_number_or_symbol(Atom,Term):- catch(atom_to_term(Atom,Term,Vars),_,fail),maplist(a2t_assign_var,Vars). +into_number_or_symbol(Atom,Term):- Term=Atom. + +a2t_assign_var(N=V):- N=V. + +fbgn_exons2affy2_overlaps_each(Gene,At):- + fb_pred(fbgn_exons2affy2_overlaps, Arity), + functor(Pred,fbgn_exons2affy2_overlaps, Arity), + arg(1,Pred,Gene), + call(Pred), + arg(N,Pred,At),N>1. + +fbgn_exons2affy2_overlaps_start_end(Gene,Start,End):- + fbgn_exons2affy2_overlaps_each(Gene,At),into_start_end(At,Start,End). + +some_xref_ids(Id):- member(Id,['FBgn0001301']). + +findall_flat_set(Arg,Goal,FlatSet):- + findall(Arg,Goal,List),flatten(List,Flat),list_to_set(Flat,FlatSet),!. + +expand_xref(Id,N,SetOfArgs):- + expand_xref_excpt([[]],Id,N,SetOfArgs). + +expand_xref_excpt(_Xcept,Id,_N,SetOfArgs):- compound(Id),!,SetOfArgs=[]. +expand_xref_excpt(Except,Id,N,SetOfArgs):- var(N),!,between(0,5,N),expand_xref_excpt(Except,Id,N,SetOfArgs). +expand_xref_excpt(Except,Id,N,SetOfArgs):- N=<1,!, + findall_flat_set(SoFar,expand_xref_once_except(Except,Id,N,SoFar),SetOfArgs). +expand_xref_excpt(Except,Id,N,SetOfArgs):- Nm1 is N -1, + expand_xref_once_except(Except,Id,1,SetOfArgs1), + findall_flat_set(EArgs,(member(E,SetOfArgs1),expand_xref_excpt([Id|Except],E,Nm1,EArgs)),SetOfArgs). + +gather_args(Except,F,Pred,Args):- findall_flat_set(Arg,gather_args(Except,F,Pred,Arg),Args). +gather_each_args(Except,F,Pred,Ele):- arg(N,Pred,Arg), \+ member(Arg,Except), + (number(Arg)-> Ele = is_nthOf(Arg,F,N) ; Ele = Arg). + +% findall_flat_set([Pred|Args], +% (call(Pred), +% (N=0 -> Args = [] ; gather_args([Id|Except],F,Pred,Args))),SetOfArgs). + + +expand_xref_once_except(Except,Id,P1):- nonvar(P1), \+ is_list(P1), + forall(between(1,6,N), + expand_xref_once_except_each(Except,Id,N,P1)). + +expand_xref_once_except(Except,Id,Set):- + ((between(1,6,N),expand_xref_once_except_each(Except,Id,N,nop),fail) + ->true;Set=Except). + +expand_xref_once_except_each(Except,Id,N,P1):- + fb_pred(F, Arity), + xgc, + \+ member(argNOf(N,F/Arity),Except), \+ member(F/Arity,Except), + Arity>=N, + expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1). + + +expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1):- + functor(Pred,F, Arity), + arg(N,Pred,Id), + call(Pred), + add_to_except(argNOf(N,F/Arity),Except), + % \+ member(Pred,Except), + % add_to_except(Pred,Except), + call(P1,Pred), + xgc. + +xgc:- + garbage_collect, + garbage_collect_atoms, + garbage_collect_clauses, + sleep(0.033). + +add_to_except(Pred,Except):- arg(2,Except,T), nb_setarg(2,Except,[Pred|T]). + +sx1:- xinfo(_Id). + +xinfo(Id):- var(Id),!,some_xref_ids(Id), xinfo(Id). +xinfo(Id):- Id=='',!. +xinfo(Id):- number(Id),!. +xinfo(Id):- expand_xref_once_except([Id],Id,my_write_src_nl). + +my_write_src_nl(X):-!, write_src_nl(X). +my_write_src_nl(X):- + must_det_ll((X=..[F|L], maplist(fast_column,L,LL),!,write_src_nl([F|LL]))). + +/* + +xinfo(Id, N):- var(Id),!,some_xref_ids(Id), xinfo(Id,N). +xinfo(Id,N):- + expand_xref(Id,N,Args), + maplist(write_src_nl,Args). + + +xinfo(Id):- + expand_xref_once_except( + [argNOf(1,entity_publication/4), + 'obo-is-a'/2, + 'obo-synonym'/4, + 'obo-charge'/2, + fbal_to_fbgn/4, + gene_genetic_interactions/6, + fbgn_gleanr/4],Id,Set), + nop(maplist(write_src_nl,Set)),fail. +xinfo(Id):- + N=1, + forall(member(F/A, + [entity_publication/4, + 'obo-is-a'/2, + 'obo-charge'/2, + gene_genetic_interactions/6, + fbgn_gleanr/4]), + expand_xref_once_except_each_fa([[]],F,A,Id,N,_Pred)). +*/ +:- dynamic fb_tsv_pred_stats/3. + +fb_tsv_pred_stats('num-columns', allele_genetic_interactions, [4]). +fb_tsv_pred_stats('duplicated-rows', allele_genetic_interactions, [21]). +fb_tsv_pred_stats('total-rows', allele_genetic_interactions, [363452]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [1, 28688, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [2, 28685, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [3, 227000, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [4, 8034, object]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [2, '', 19]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [2, 19, [#, ''], [#, 19]]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [3, '', 19]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [3, 19, [#, ''], [#, 19]]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [4, '', 38]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [4, 38, [#, ''], [#, 38]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [1, [#, [#, 'Scer\\GAL4[hs.2sev]', 1793], [#, 'Scer\\GAL4[elav.PU]', 1893], [#, 'Scer\\GAL4[Bx-MS1096]', 1990], [#, 'Scer\\GAL4[ey.PH]', 2227], [#, 'Scer\\GAL4[elav-C155]', 2526], [#, 'Scer\\GAL4[GMR.PU]', 9205], [#, 'Scer\\GAL4[GMR.PF]', 14267]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [1, [#, [#, 'Su(mg)2-1[2-1]', 1], [#, 'dnt[ap.ME4]', 1], [#, 'Fas2[unspecified]', 1], [#, 'dock[R336Q.UAS]', 1], [#, 'dock[W151K.UAS]', 1], [#, 'dock[W225K.UAS]', 1], [#, 'dock[W48K.UAS]', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0042580', 1793], [#, 'FBal0241645', 1893], [#, 'FBal0040476', 1990], [#, 'FBal0093300', 2227], [#, 'FBal0047071', 2526], [#, 'FBal0240667', 9205], [#, 'FBal0244011', 14267]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0083171', 1], [#, 'FBal0094549', 1], [#, 'FBal0104139', 1], [#, 'FBal0089352', 1], [#, 'FBal0089350', 1], [#, 'FBal0089348', 1], [#, 'FBal0089346', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [3, [#, [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has wing phenotype', 8], [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has lethal phenotype', 8], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has neoplasia phenotype', 9], [#, 'rho[ve-1], vn[1] has wing vein phenotype', 10], [#, 'Dp[GMR.PD], E2f1[GMR.PD] has eye phenotype', 10], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has eye phenotype', 18]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [3, [#, [#, '1038[1038] is an enhancer of visible phenotype of vg[83b27]/vg[1]', 1], [#, 'bas[1] is an enhancer of paralytic phenotype of para[bss1]', 1], [#, 'baz[4] has abnormal cell polarity phenotype, enhanceable by Dhc64C[6-6]/Dhc64C[6-8]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-suppressible by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-suppressible by aPKC[Exc55]', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0179402', 1369], [#, 'FBrf0237532', 1506], [#, 'FBrf0147055', 1723], [#, 'FBrf0246190', 1852], [#, 'FBrf0190765', 1868], [#, 'FBrf0199094', 1940], [#, 'FBrf0187664', 2514]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0158937', 1], [#, 'FBrf0159209', 1], [#, 'FBrf0192307', 1], [#, 'FBrf0226217', 1], [#, 'FBrf0160985', 1], [#, 'FBrf0134563', 1], [#, 'FBrf0235180', 1]]]). +fb_tsv_pred_stats('num-columns', fbal_to_fbgn, [4]). +fb_tsv_pred_stats('duplicated-rows', fbal_to_fbgn, [0]). +fb_tsv_pred_stats('total-rows', fbal_to_fbgn, [288468]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [1, 288468, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [2, 288454, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [3, 33136, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [4, 33136, object]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [3, '', 58]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [3, 58, [#, ''], [#, 58]]). +fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [4, '', 58]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [4, 58, [#, ''], [#, 58]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [2, [#, [#, 'abd-A[HCJ32', 2], [#, 'Ecol\\lacZ[HCJ32', 2], [#, 'Ecol\\lacZ[Dora-PL29', 2], [#, 'abd-A[HC184B-HCJ32', 2], [#, 'Mhc[', 2], [#, 'y[2', 3], [#, 'y[1', 5]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [2, [#, [#, 'Xrp1[142]', 1], [#, 'Apc2[45]', 1], [#, 'Apc2[5-3]', 1], [#, 'Apc2[Delta20rep.Tag:HA]', 1], [#, 'TBC1d7[Apc2-79]', 1], [#, 'mRpS24[Apc2-79]', 1], [#, 'mRpS24[+t3.78]', 1]]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0004034', 989], [#, 'FBgn0003996', 1474], [#, 'FBgn0015250', 2466], [#, 'FBgn0262639', 3340], [#, 'FBgn0014446', 4731], [#, 'FBgn0014447', 12710], [#, 'FBgn0014445', 30381]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0267024', 1], [#, 'FBgn0044109', 1], [#, 'FBgn0018700', 1], [#, 'FBgn0014164', 1], [#, 'FBgn0003537', 1], [#, 'FBgn0002275', 1], [#, 'FBgn0001163', 1]]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [4, [#, [#, y, 989], [#, w, 1474], [#, 'Ecol\\lexA', 2466], [#, 'Hsap\\RELA', 3340], [#, 'Avic\\GFP', 4731], [#, 'Ecol\\lacZ', 12710], [#, 'Scer\\GAL4', 30381]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [4, [#, [#, 'asRNA:CR45468', 1], [#, 'E(rst)C383', 1], [#, 'Dpau\\v', 1], [#, fez, 1], [#, 'Stp-1', 1], [#, 'l(3)70Ac', 1], [#, 'GustR', 1]]]). +fb_tsv_pred_stats('num-columns', genotype_phenotype_data, [7]). +fb_tsv_pred_stats('duplicated-rows', genotype_phenotype_data, [1032]). +fb_tsv_pred_stats('total-rows', genotype_phenotype_data, [384206]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [1, 155953, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [2, 155919, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [3, 3603, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [4, 3608, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [5, 1340, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [6, 1348, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [7, 19007, object]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [2, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [2, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [3, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [3, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [4, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [4, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [5, '', 242201]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [5, 242201, [#, ''], [#, 242201]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [6, '', 242201]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [6, 242201, [#, ''], [#, 242201]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [7, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [7, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [1, [#, [#, 'hid[GMR.PG]', 177], [#, 'numb[1]', 190], [#, 'wg[l-17]', 198], [#, 'N[l1N-ts1]', 238], [#, 'y[1', 242], [#, 'N[55e11]', 261], [#, 'Pink1[B9]', 316]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [1, [#, [#, 'Scer\\GAL4[elav.PLu] y[GD1564] Dcr-2[UAS.cDa]', 1], [#, 'Scer\\GAL4[nub-AC-62] Slu7[HMC04054]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b6[HMS02566]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b5[HMS00097]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b1[HMS00055]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a2[HMC03799]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a1[HMS00157]', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0265023', 177], [#, 'FBal0013186', 190], [#, 'FBal0018509', 198], [#, 'FBal0012887', 238], [#, 'FBal0012701', 261], [#, 'FBal0193144', 316]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0244778', 1], [#, 'FBal0058766 FBal0150204', 1], [#, 'FBal0058766 FBal0150205', 1], [#, 'FBal0147425 FBal0241645 FBal0299692', 1], [#, 'FBal0058766 FBal0215661', 1], [#, 'FBal0147425 FBal0241645 FBal0290792', 1], [#, 'FBal0058766 FBal0277700', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [3, [#, [#, 'lethal - all die during embryonic stage', 5395], [#, eye, 8272], [#, 'abnormal neuroanatomy', 9153], [#, wing, 10701], [#, visible, 24435], [#, lethal, 35360], [#, viable, 47447]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [3, [#, [#, 'rough endoplasmic reticulum membrane', 1], [#, 'muscle cell of basalar muscle 49', 1], [#, 'gonadal sheath', 1], [#, 'visceral muscle cell', 1], [#, 'A1-7 ventral acute muscle cell', 1], [#, 'pupal s-LNv neuron', 1], [#, 'larval s-LNv neuron', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [4, [#, [#, 'FBcv0002033', 5395], [#, 'FBbt00004508', 8272], [#, 'FBcv0000435', 9153], [#, 'FBbt00004729', 10701], [#, 'FBcv0000354', 24435], [#, 'FBcv0000351', 35360], [#, 'FBcv0000349', 47447]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [4, [#, [#, 'FBbt00001314', 1], [#, 'FBbt00110023', 1], [#, 'FBbt00110022', 1], [#, 'FBbt00002511', 1], [#, 'FBbt00067044', 1], [#, 'FBbt00067062', 1], [#, 'FBbt00017021', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [5, [#, [#, 'embryonic stage', 4459], [#, 'somatic clone', 8931], [#, 'larval stage', 9821], [#, 'third instar larval stage', 9888], [#, 'adult stage', 16290], [#, recessive, 40476]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [5, [#, [#, 'germline clone|embryonic stage 13', 1], [#, 'somatic clone - tissue specific|decreased number', 1], [#, 'oogenesis|decreased number|germline clone', 1], [#, 'germline clone|decreased number', 1], [#, 'recessive|first instar larval stage|maternal effect', 1], [#, 'maternal effect|second instar larval stage|recessive', 1], [#, 'larval stage|somatic clone|cell autonomous|decreased number', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [6, [#, [#, 'FBdv00005289', 4459], [#, 'FBcv0000336', 8931], [#, 'FBdv00005336', 9821], [#, 'FBdv00005339', 9888], [#, 'FBdv00005369', 16290], [#, 'FBcv0000298', 40476]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [6, [#, [#, 'FBcv0000732', 1], [#, 'FBcv0000333|FBdv00005369|FBcv0000793', 1], [#, 'FBcv0000153|FBcv0000068', 1], [#, 'FBcv0000058|FBcv0000061', 1], [#, 'FBcv0000336|FBdv00005339|FBcv0000061', 1], [#, 'FBcv0007050|FBdv00007001|FBcv0000068', 1], [#, 'FBcv0007048|FBdv00005338', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0132177', 2452], [#, 'FBrf0179797', 2682], [#, 'FBrf0210524', 7345], [#, 'FBrf0212295', 11407], [#, 'FBrf0210226', 11838], [#, unattributed, 15059], [#, 'FBrf0214518', 19955]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0189827', 1], [#, 'FBrf0179942', 1], [#, 'FBrf0206908', 1], [#, 'FBrf0183397', 1], [#, 'FBrf0023153', 1], [#, 'FBrf0221688', 1], [#, 'FBrf0237982', 1]]]). +fb_tsv_pred_stats('num-columns', cDNA_clone_data, [6]). +fb_tsv_pred_stats('duplicated-rows', cDNA_clone_data, [0]). +fb_tsv_pred_stats('total-rows', cDNA_clone_data, [722570]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [1, 722570, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [2, 4, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [3, 722570, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [4, 50, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [5, 22711, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [6, 696400, object]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [3, unknown, 1]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [3, 1, [#, unknown], [#, 1]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [4, '', 354]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [4, 354, [#, ''], [#, 354]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [5, '', 696444]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [5, 696444, [#, ''], [#, 696444]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [6, '', 26168]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [6, 26168, [#, ''], [#, 26168]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [4, [#, [#, 'SD_cDNA', 18885], [#, 'GH_cDNA', 20768], [#, 'AT_cDNA', 22564], [#, 'RH_cDNA', 52475], [#, 'RE_cDNA', 58036], [#, 'EK_EP_cDNA', 161904], [#, 'RP_cDNA', 220083]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [4, [#, [#, 'TB_cDNA', 3], [#, 'TA_cDNA', 36], [#, 'DE-ORESTES_cDNA', 61], [#, 'CB_cDNA', 61], [#, 'AM_cDNA', 84], [#, 'ST_cDNA', 85], [#, 'RT_pCR8_cDNA', 156]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [5, [#, [#, 'AY069671', 2], [#, 'AY051957', 2], [#, 'AY061414', 2], [#, 'AY069707', 2], [#, 'AY051914', 2], [#, 'AY231748', 3]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [5, [#, [#, 'BT150453', 1], [#, 'BT050556', 1], [#, 'BT010219', 1], [#, 'BT125004', 1], [#, 'BT006005', 1], [#, 'BT099857', 1], [#, 'BT100119', 1]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [6, [#, [#, 'GH897620', 1], [#, 'GH934971', 1], [#, 'CA807794', 1], [#, 'AI256966', 2], [#, 'BI636404', 2], [#, 'BI633401', 2]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [6, [#, [#, 'CA807794', 1], [#, 'GH872553', 1], [#, 'GH881842', 1], [#, 'GH911192', 1], [#, 'GH817175', 1], [#, 'GH899993', 1], [#, 'GH918491', 1]]]). +fb_tsv_pred_stats('num-columns', genomic_clone_data, [4]). +fb_tsv_pred_stats('duplicated-rows', genomic_clone_data, [0]). +fb_tsv_pred_stats('total-rows', genomic_clone_data, [50400]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [1, 50400, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [2, 1, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [3, 50400, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [4, 970, object]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', genomic_clone_data, [4, '', 49428]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [4, 49428, [#, ''], [#, 49428]]). +fb_tsv_pred_stats('most-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). +fb_tsv_pred_stats('less-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). +fb_tsv_pred_stats('most-frequent', genomic_clone_data, [4, [#, [#, 'AC104703', 1], [#, 'AC010031', 1], [#, 'AC069405', 1], [#, 'AC011662', 2], [#, 'AC098575', 2], [#, 'AC009888', 2]]]). +fb_tsv_pred_stats('less-frequent', genomic_clone_data, [4, [#, [#, 'AC105774', 1], [#, 'AC091226', 1], [#, 'AC069405', 1], [#, 'AC154046', 1], [#, 'AC010031', 1], [#, 'AC104703', 1], [#, 'AC010573', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_uniprot, [4]). +fb_tsv_pred_stats('duplicated-rows', fbgn_uniprot, [0]). +fb_tsv_pred_stats('total-rows', fbgn_uniprot, [32529]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [1, 17130, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [2, 17130, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [3, 13964, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [4, 32341, object]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_uniprot, [3, '', 4918]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [3, 4918, [#, ''], [#, 4918]]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0265045', 40], [#, 'FBgn0013885', 49], [#, 'FBgn0002022', 50], [#, 'FBgn0285944', 56], [#, 'FBgn0033159', 79], [#, 'FBgn0082496', 101], [#, 'FBgn0003731', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0040211', 1], [#, 'FBgn0040235', 1], [#, 'FBgn0040239', 1], [#, 'FBgn0040250', 1], [#, 'FBgn0040251', 1], [#, 'FBgn0040252', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [2, [#, [#, 'Strn-Mlck', 40], [#, 'Dsub\\Acph-1', 49], [#, 'Catsup', 50], [#, para, 56], [#, 'Dscam1', 79], [#, 'Dpmo\\bi', 101], [#, 'Egfr', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [2, [#, [#, a, 1], [#, hgo, 1], [#, 'c12.1', 1], [#, bc10, 1], [#, 'Ugt304A1', 1], [#, 'Ugt302K1', 1], [#, 'Ugt303A1', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [3, [#, [#, 'CG33950', 32], [#, 'CG44162', 40], [#, 'CG10449', 50], [#, 'CG9907', 56], [#, 'CG17800', 79], [#, 'CG10079', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [3, [#, [#, 'CG6741', 1], [#, 'CG9913', 1], [#, 'CG3172', 1], [#, 'CG14356', 1], [#, 'CG14355', 1], [#, 'CG9722', 1], [#, 'CG9649', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [4, [#, [#, 'Q7KV12', 5], [#, 'Q5F4J7', 6], [#, 'P02255', 18], [#, 'P84051', 18], [#, 'P02299', 24], [#, 'P02283', 24], [#, 'P84040', 24]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [4, [#, [#, 'A0A0B4LG21', 1], [#, 'Q9GST6', 1], [#, 'Q9GST1', 1], [#, 'Q9GN59', 1], [#, 'Q9GNH0', 1], [#, 'Q9GPD9', 1], [#, 'Q9GNH4', 1]]]). +fb_tsv_pred_stats('num-columns', gp_informatio, [2]). +fb_tsv_pred_stats('duplicated-rows', gp_informatio, [8413]). +fb_tsv_pred_stats('total-rows', gp_informatio, [11695]). +fb_tsv_pred_stats('unique-values', gp_informatio, [1, 1885, object]). +fb_tsv_pred_stats('unique-values', gp_informatio, [2, 1851, object]). +fb_tsv_pred_stats('missing-values', gp_informatio, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gp_informatio, [2, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gp_informatio, [1, [#, [#, at, 24], [#, kinase, 35], [#, factor, 47], [#, of, 60], [#, 'P450', 82], [#, receptor, 203], [#, protein, 334]]]). +fb_tsv_pred_stats('less-frequent', gp_informatio, [1, [#, [#, '07/24/2023', 1], [#, 'receptor\\CG30106\\protein\\taxon:7227\\\\UniProtKB:A1ZAX0\\', 1], [#, '1b\\CG6446\\protein\\taxon:7227\\\\UniProtKB:O44253|UniProtKB:Q7KK54\\', 1], [#, '55B\\CG5765\\protein\\taxon:7227\\\\UniProtKB:Q8SXS5|UniProtKB:A1ZB24\\', 1], [#, 'K[+]', 1], [#, shock, 1], [#, 'MCU', 1]]]). +fb_tsv_pred_stats('most-frequent', gp_informatio, [2, [#, [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, 'regulator\\CG17680\\protein\\taxon:7227\\\\UniProtKB:Q7JX57\\', 1], [#, 'channel\\CG5076\\protein\\taxon:7227\\\\UniProtKB:Q23974|UniProtKB:A1ZB14|UniProtKB:A0A0B4LGW2\\', 1], [#, _, 1]]]). +fb_tsv_pred_stats('less-frequent', gp_informatio, [2, [#, [#, _, 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '2\\CG10924\\protein\\taxon:7227\\\\UniProtKB:Q7JXB5|UniProtKB:A8DYI3\\', 1], [#, '1\\CG5170\\protein\\taxon:7227\\\\UniProtKB:Q7KN84|UniProtKB:Q95T04|UniProtKB:Q9U982|UniProtKB:Q7KN75\\', 1]]]). +fb_tsv_pred_stats('num-columns', pmid_fbgn_uniprot, [5]). +fb_tsv_pred_stats('duplicated-rows', pmid_fbgn_uniprot, [0]). +fb_tsv_pred_stats('total-rows', pmid_fbgn_uniprot, [2262948]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [1, 57873, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [2, 57872, int64]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [3, 146121, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [4, 2, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [5, 184918, object]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0244508', 11253], [#, 'FBrf0229340', 12087], [#, 'FBrf0210524', 14897], [#, 'FBrf0212295', 20997], [#, 'FBrf0210226', 21057], [#, 'FBrf0219727', 27601], [#, 'FBrf0200326', 154679]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0207593', 1], [#, 'FBrf0073396', 1], [#, 'FBrf0216372', 1], [#, 'FBrf0050713', 1], [#, 'FBrf0215265', 1], [#, 'FBrf0228014', 1], [#, 'FBrf0084265', 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [2, [#, [#, 31722958, 11253], [#, 25312911, 12087], [#, 20371351, 14897], [#, 21074052, 20997], [#, 20220848, 21057], [#, 23071443, 27601], [#, 17994087, 154679]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [2, [#, [#, 19226322, 1], [#, 21035367, 1], [#, 3938362, 1], [#, 7641726, 1], [#, 31992709, 1], [#, 2504633, 1], [#, 7924995, 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0003371', 11920], [#, 'FBgn0001624', 12980], [#, 'FBgn0264255', 17080], [#, 'FBgn0004647', 18088], [#, 'FBgn0033159', 22357], [#, 'FBgn0285944', 22904], [#, 'FBgn0003731', 395427]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0182483', 1], [#, 'FBgn0152605', 1], [#, 'FBgn0102225', 1], [#, 'FBgn0191710', 1], [#, 'FBgn0186768', 1], [#, 'FBgn0138504', 1], [#, 'FBgn0147962', 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'Q7YSQ1', 2584], [#, 'Q7Z1J1', 2584], [#, 'Q7YSR5', 2584], [#, 'Q7YSU6', 2584], [#, 'M9NE67', 2584], [#, 'P10090', 3804], [#, 'P09615', 4838]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'B4QI97', 1], [#, 'B4IFF0', 1], [#, 'B3MJC2', 1], [#, 'B4NVB3', 1], [#, 'A0A0Q9WJA5', 1], [#, 'B4H241', 1], [#, 'B3NEU8', 1]]]). +fb_tsv_pred_stats('num-columns', automated_gene_summaries, [2]). +fb_tsv_pred_stats('duplicated-rows', automated_gene_summaries, [0]). +fb_tsv_pred_stats('total-rows', automated_gene_summaries, [237237]). +fb_tsv_pred_stats('unique-values', automated_gene_summaries, [1, 237237, object]). +fb_tsv_pred_stats('unique-values', automated_gene_summaries, [2, 237237, object]). +fb_tsv_pred_stats('missing-values', automated_gene_summaries, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', automated_gene_summaries, [2, 0, [], []]). +fb_tsv_pred_stats('num-columns', best_gene_summary, [4]). +fb_tsv_pred_stats('duplicated-rows', best_gene_summary, [0]). +fb_tsv_pred_stats('total-rows', best_gene_summary, [32142]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [1, 32142, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [2, 32142, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [3, 5, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [4, 29750, object]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', best_gene_summary, [4, '', 21]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [4, 21, [#, ''], [#, 21]]). +fb_tsv_pred_stats('most-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). +fb_tsv_pred_stats('less-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). +fb_tsv_pred_stats('most-frequent', best_gene_summary, [4, [#, [#, 'Predicted to enable chitin binding activity. Predicted to be located in extracellular region.', 48], [#, 'Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis.', 56], [#, 'Is expressed in spermatozoon.', 63], [#, 'Predicted to be involved in RNA processing. Predicted to be located in nucleolus.', 72], [#, 'Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome.', 96], [#, 'Is expressed in organism.', 107], [#, 'Is expressed in adult head.', 114]]]). +fb_tsv_pred_stats('less-frequent', best_gene_summary, [4, [#, [#, 'The gene lethal (1) 291-68 is referred to in FlyBase by the symbol Dmel\\l(1)291-68 (FBgn0011177). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: lethal.', 1], [#, 'The gene E(csw)3B is referred to in FlyBase by the symbol Dmel\\E(csw)3B (FBgn0041256). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is described by: . The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene E3 is referred to in FlyBase by the symbol Dmel\\E3 (FBgn0041255). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene H23-14 is referred to in FlyBase by the symbol Dmel\\H23-14 (FBgn0041211). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: auxotroph.', 1], [#, 'The gene Lipocalin is referred to in FlyBase by the symbol Dmel\\Lipocalin (FBgn0041202). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene prolyl-4-hydroxylase-a related protein is referred to in FlyBase by the symbol Dmel\\PH4\\03b1-RP (FBgn0041197). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene SSP6107 is referred to in FlyBase by the symbol Dmel\\SSP6107 (FBgn0041189). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1]]]). +fb_tsv_pred_stats('num-columns', 'Dmel_enzyme_data', [11]). +fb_tsv_pred_stats('duplicated-rows', 'Dmel_enzyme_data', [0]). +fb_tsv_pred_stats('total-rows', 'Dmel_enzyme_data', [3969]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [1, 572, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [2, 572, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [3, 441, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [4, 441, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [5, 281, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [6, 182, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [7, 3736, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [8, 3736, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [9, 2454, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [10, 860, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [11, 860, object]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [5, '', 1642]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [5, 1642, [#, ''], [#, 1642]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [6, '', 2724]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [6, 2724, [#, ''], [#, 2724]]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [8, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [9, '', 1328]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [9, 1328, [#, ''], [#, 1328]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [10, '', 1609]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [10, 1609, [#, ''], [#, 1609]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [11, '', 1609]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [11, 1609, [#, ''], [#, 1609]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001478', 36], [#, 'FBgg0001695', 36], [#, 'FBgg0001207', 45], [#, 'FBgg0001618', 51], [#, 'FBgg0001079', 61], [#, 'FBgg0000128', 98], [#, 'FBgg0001078', 114]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001510', 1], [#, 'FBgg0001617', 1], [#, 'FBgg0001419', 1], [#, 'FBgg0001420', 1], [#, 'FBgg0001622', 1], [#, 'FBgg0001246', 1], [#, 'FBgg0000869', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'UNCLASSIFIED RNA ENDONUCLEASES', 36], [#, 'CYTOCHROME P450 - CYP3 CLAN', 36], [#, 'UNCLASSIFIED NON-AMINOACYL ACYLTRANSFERASES', 45], [#, 'ECDYSTEROID KINASE-LIKE', 51], [#, 'S1A SERINE PROTEASES - CHYMOTRYPSIN-LIKE', 61], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'TRANSGLUTAMINASES', 1], [#, 'BETA-ALANYL-DOPAMINE/HISTAMINE HYDROLASES', 1], [#, 'SITE 2 PEPTIDASES', 1], [#, 'M76 METALLOENDOPEPTIDASES', 1], [#, 'EYA FAMILY PROTEIN TYROSINE PHOSPHATASES', 1], [#, 'DEOXYCYTIDYLTRANSFERASES', 1], [#, 'OXO-ACID-LYASES', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0004806', 55], [#, 'GO:0003724', 59], [#, 'GO:0004674', 90], [#, 'GO:0004497', 93], [#, 'GO:0003924', 146], [#, 'GO:0061630', 150], [#, 'GO:0004252', 205]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0071566', 1], [#, 'GO:0003810', 1], [#, 'GO:0003923', 1], [#, 'GO:0016642', 1], [#, 'GO:0061863', 1], [#, 'GO:0008970', 1], [#, 'GO:0016872', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'triglyceride lipase activity', 55], [#, 'RNA helicase activity', 59], [#, 'protein serine/threonine kinase activity', 90], [#, 'monooxygenase activity', 93], [#, 'GTPase activity', 146], [#, 'ubiquitin protein ligase activity', 150], [#, 'serine-type endopeptidase activity', 205]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'UFM1 activating enzyme activity', 1], [#, 'protein-glutamine gamma-glutamyltransferase activity', 1], [#, 'GPI-anchor transamidase activity', 1], [#, 'oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor', 1], [#, 'microtubule plus end polymerase', 1], [#, 'phospholipase A1 activity', 1], [#, 'intramolecular lyase activity', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [5, [#, [#, '3.1.3.16', 47], [#, '3.4.24.-', 47], [#, '3.1.1.3', 55], [#, '3.6.4.13', 59], [#, '2.7.11.1', 90], [#, '3.4.21.-', 209]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [5, [#, [#, '1.16.1.-', 1], [#, '3.4.19.5', 1], [#, '3.2.1.130', 1], [#, '3.5.1.89', 1], [#, '4.3.1.-|4.3.-.-', 1], [#, '7.2.2.9', 1], [#, '4.1.99.22', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ubiquitinyl hydrolase 1', 36], [#, 'glutathione transferase', 38], [#, 'protein-serine/threonine phosphatase', 47], [#, 'triacylglycerol lipase', 55], [#, 'RNA helicase', 59], [#, 'non-specific serine/threonine protein kinase', 90]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ribonuclease T2', 1], [#, 'tripeptidyl-peptidase I|tripeptidyl-peptidase II', 1], [#, 'phospholipase A1', 1], [#, 'deoxyribonuclease II', 1], [#, 'N-acetylglucosamine-6-phosphate deacetylase', 1], [#, 'molybdopterin molybdotransferase', 1], [#, 'protoporphyrin ferrochelatase', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0028916', 3], [#, 'FBgn0002905', 3], [#, 'FBgn0030731', 3], [#, 'FBgn0011768', 3], [#, 'FBgn0034246', 3], [#, 'FBgn0263831', 4], [#, 'FBgn0010355', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0043576', 1], [#, 'FBgn0043577', 1], [#, 'FBgn0043578', 1], [#, 'FBgn0029689', 1], [#, 'FBgn0037759', 1], [#, 'FBgn0027538', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'CG33090', 3], [#, 'PolQ', 3], [#, 'Mfe2', 3], [#, 'Fdh', 3], [#, 'Dcr-2', 3], [#, 'Gen', 4], [#, 'Taf1', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'ari-2', 1], [#, 'PGRP-SC1a', 1], [#, 'PGRP-SB2', 1], [#, 'PGRP-SB1', 1], [#, 'CG6428', 1], [#, 'CG8526', 1], [#, beta4GalNAcTA, 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [9, [#, [#, rudimentary, 3], [#, 'Trehalose-6-phosphate synthase 1', 3], [#, 'peroxisomal Multifunctional enzyme type 2', 3], [#, sepia, 3], [#, 'XPG-like endonuclease', 4], [#, 'TBP-associated factor 1', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [9, [#, [#, 'ariadne 2', 1], [#, 'Cardiolipin synthase', 1], [#, 'Sphingomyelin synthase related', 1], [#, 'Phosphatidylserine synthase', 1], [#, 'Pyruvate kinase', 1], [#, 'easily shocked', 1], [#, fumble, 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [10, [#, [#, '5.2.1.8', 33], [#, '3.4.19.12', 36], [#, '3.1.3.16', 38], [#, '3.1.1.3', 51], [#, '3.6.4.13', 54], [#, '2.7.11.1', 104]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [10, [#, [#, '2.5.1.16', 1], [#, '2.1.1.62', 1], [#, '2.1.1.56', 1], [#, '2.1.1.386', 1], [#, '2.3.3.10', 1], [#, '2.3.3.8', 1], [#, '2.3.1.168', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'peptidylprolyl isomerase', 33], [#, 'ubiquitinyl hydrolase 1', 36], [#, 'protein-serine/threonine phosphatase', 38], [#, 'triacylglycerol lipase', 51], [#, 'RNA helicase', 54], [#, 'non-specific serine/threonine protein kinase', 104]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'spermidine synthase', 1], [#, 'mRNA (2\'-O-methyladenosine-N(6)-)-methyltransferase', 1], [#, 'mRNA (guanine-N(7))-methyltransferase', 1], [#, 'small RNA 2\'-O-methyltransferase', 1], [#, 'hydroxymethylglutaryl-CoA synthase', 1], [#, 'ATP citrate synthase', 1], [#, 'dihydrolipoyllysine-residue (2-methylpropanoyl)transferase', 1]]]). +fb_tsv_pred_stats('num-columns', dmel_gene_sequence_ontology_annotations, [4]). +fb_tsv_pred_stats('duplicated-rows', dmel_gene_sequence_ontology_annotations, [0]). +fb_tsv_pred_stats('total-rows', dmel_gene_sequence_ontology_annotations, [38590]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [1, 17902, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [2, 17902, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [3, 44, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [4, 44, object]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0263102', 5], [#, 'FBgn0264308', 5], [#, 'FBgn0285944', 5], [#, 'FBgn0000448', 5], [#, 'FBgn0266019', 5], [#, 'FBgn0260866', 5], [#, 'FBgn0283521', 5]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0000003', 1], [#, 'FBgn0085282', 1], [#, 'FBgn0085280', 1], [#, 'FBgn0085279', 1], [#, 'FBgn0085277', 1], [#, 'FBgn0085276', 1], [#, 'FBgn0085274', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, psq, 5], [#, hbt, 5], [#, para, 5], [#, 'Hr3', 5], [#, rudhira, 5], [#, dnr1, 5], [#, lola, 5]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, '7SLRNA:CR32864', 1], [#, 'CG34253', 1], [#, 'CG34251', 1], [#, 'CG34250', 1], [#, 'CG34248', 1], [#, 'CG34247', 1], [#, 'CG34245', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, gene_with_stop_codon_read_through, 402], [#, antisense_lncRNA_gene, 507], [#, gene, 767], [#, gene_with_edited_transcript, 810], [#, lncRNA_gene, 1996], [#, protein_coding_gene, 13986], [#, nuclear_gene, 17707]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, 'RNase_MRP_RNA_gene', 1], [#, 'RNase_P_RNA_gene', 1], [#, mt_SSU_rRNA_gene, 1], [#, mt_LSU_rRNA_gene, 1], [#, gene_with_recoded_mRNA, 2]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0000697', 402], [#, 'SO:0002182', 507], [#, 'SO:0000704', 767], [#, 'SO:0000548', 810], [#, 'SO:0002127', 1996], [#, 'SO:0001217', 13986], [#, 'SO:0000087', 17707]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0002353', 1], [#, 'SO:0001269', 1], [#, 'SO:0001640', 1], [#, 'SO:0001639', 1], [#, 'SO:0002365', 1], [#, 'SO:0002364', 1], [#, 'SO:0000693', 2]]]). +fb_tsv_pred_stats('num-columns', dmel_unique_protein_isoforms, [4]). +fb_tsv_pred_stats('duplicated-rows', dmel_unique_protein_isoforms, [0]). +fb_tsv_pred_stats('total-rows', dmel_unique_protein_isoforms, [22452]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [1, 13986, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [2, 13986, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [3, 22452, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [4, 5633, object]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', dmel_unique_protein_isoforms, [4, '', 16820]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [4, 16820, [#, ''], [#, 16820]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0003429', 23], [#, 'FBgn0033504', 25], [#, 'FBgn0266696', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 57], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0038579', 1], [#, 'FBgn0038581', 1], [#, 'FBgn0038582', 1], [#, 'FBgn0038583', 1], [#, 'FBgn0038584', 1], [#, 'FBgn0038585', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [2, [#, [#, slo, 23], [#, 'CAP', 25], [#, 'Svil', 25], [#, trol, 25], [#, 'mod(mdg4)', 31], [#, para, 57], [#, 'Dscam1', 75]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [2, [#, [#, a, 1], [#, 'CG14313', 1], [#, 'CG14314', 1], [#, 'CG7988', 1], [#, 'CG7183', 1], [#, mTerf5, 1], [#, 'Non3', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'Saf-B-PF', 1], [#, 'sosie-PC', 1], [#, 'Nct-PC', 1], [#, 'CG3744-PG', 1], [#, 'CG3744-PF', 1], [#, 'Not11-PC', 1]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'MAN1-PB,MAN1-PC', 1], [#, 'Nct-PC', 1], [#, 'sosie-PC', 1], [#, 'Saf-B-PF', 1], [#, 'Ude-PC,Ude-PD', 1], [#, 'CG5805-PB', 1], [#, 'atl-PB,atl-PC', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_annotation_ID, [6]). +fb_tsv_pred_stats('duplicated-rows', fbgn_annotation_ID, [0]). +fb_tsv_pred_stats('total-rows', fbgn_annotation_ID, [17901]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [1, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [2, 1, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [3, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [4, 6498, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [5, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [6, 2214, object]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [4, '', 11059]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [4, 11059, [#, ''], [#, 11059]]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [5, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [6, '', 15268]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [6, 15268, [#, ''], [#, 15268]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0031342', 4], [#, 'FBgn0034648', 4], [#, 'FBgn0037173', 6], [#, 'FBgn0003932', 6], [#, 'FBgn0052605', 12], [#, 'FBgn0002867', 32]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0034701,FBgn0034702', 1], [#, 'FBgn0036269,FBgn0036270', 1], [#, 'FBgn0062499', 1], [#, 'FBgn0045834,FBgn0046807', 1], [#, 'FBgn0060100', 1], [#, 'FBgn0036185,FBgn0040818', 1], [#, 'FBgn0036175', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG14398', 4], [#, 'CG15675', 4], [#, 'CG10450', 4], [#, 'CG14458', 6], [#, 'CG2149', 6], [#, 'CG32605', 12]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG13505', 1], [#, 'CG15275,CG15276,CG15277,CG33515', 1], [#, 'CG31537,CG2534', 1], [#, 'CG30111,CG5058', 1], [#, 'CG30164,CG30165,CG30166,CG4556', 1], [#, 'CG30179,CG30174,CG33149,CG3220', 1], [#, 'CG14428', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_exons2affy1_overlaps, [30]). +fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy1_overlaps, [0]). +fb_tsv_pred_stats('total-rows', fbgn_exons2affy1_overlaps, [12082]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [1, 12082, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [2, 11598, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [3, 11576, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [4, 11569, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [5, 11538, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [6, 11509, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [7, 11474, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [8, 11449, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [9, 11414, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [10, 11387, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [11, 11345, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [12, 11314, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [13, 11244, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [14, 11171, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [15, 10830, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [16, 1808, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [17, 1555, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [18, 1450, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [19, 1358, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [20, 1308, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [21, 1258, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [22, 1213, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [23, 1183, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [24, 1139, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [25, 1102, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [26, 1058, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [27, 994, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [28, 922, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [29, 743, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [30, 34, object]). 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fbgn_exons2affy1_overlaps, [7, 232, [#, ''], [#, 232]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [8, '', 265]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [8, 265, [#, ''], [#, 265]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [9, '', 305]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [9, 305, [#, ''], [#, 305]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [10, '', 341]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [10, 341, [#, ''], [#, 341]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [11, '', 392]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [11, 392, [#, ''], [#, 392]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [12, '', 425]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [12, 425, [#, ''], [#, 425]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [13, '', 506]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [13, 506, [#, ''], [#, 506]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [14, '', 587]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [14, 587, [#, ''], [#, 587]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [15, '', 947]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [15, 947, [#, ''], [#, 947]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [16, '', 10174]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [16, 10174, [#, ''], [#, 10174]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [17, '', 10457]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [17, 10457, [#, ''], [#, 10457]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [18, '', 10572]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [18, 10572, [#, ''], [#, 10572]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [19, '', 10667]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [19, 10667, [#, ''], [#, 10667]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [20, '', 10722]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [20, 10722, [#, ''], [#, 10722]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [21, '', 10774]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [21, 10774, [#, ''], [#, 10774]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [22, '', 10821]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [22, 10821, [#, ''], [#, 10821]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [23, '', 10853]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [23, 10853, [#, ''], [#, 10853]]). 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'150311_at_124', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [3, [#, [#, '143052_at_1816', 1], [#, '149464_at_1100', 1], [#, '142785_at_1174', 1], [#, '142029_at_45', 1], [#, '149466_at_2832', 1], [#, '149467_at_1882', 1], [#, '149468_at_757', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '147260_at_80', 3], [#, '147730_at_550', 3], [#, '155060_at_1472', 3], [#, '151873_at_2043', 4], [#, '152093_at_2053', 4], [#, '150311_at_247', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '143052_at_1742', 1], [#, '152622_at_824', 1], [#, '149458_at_1158', 1], [#, '149459_at_906', 1], [#, '154507_at_1873', 1], [#, '149463_at_2017', 1], [#, '149464_at_1134', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [5, [#, [#, '147260_at_76', 3], [#, '155060_at_1504', 3], [#, '148466_at_864', 3], [#, '151873_at_2023', 4], [#, '152093_at_2081', 4], [#, '150311_at_271', 7]]]). 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fbgn_exons2affy1_overlaps, [7, [#, [#, '143052_at_1703', 1], [#, '154319_at_927', 1], [#, '154993_at_1959', 1], [#, '149402_at_2878', 1], [#, '149403_at_625', 1], [#, '149408_at_1010', 1], [#, '149409_at_619', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '151429_at_270', 3], [#, '155060_at_1574', 3], [#, '142689_at_2342', 3], [#, '151873_at_1804', 4], [#, '152093_at_2177', 4], [#, '150311_at_350', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '150941_f_at_115', 1], [#, '142317_at_420', 1], [#, '141883_at_323', 1], [#, '149397_at_943', 1], [#, '149398_at_568', 1], [#, '152411_at_1798', 1], [#, '149399_at_1928', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '155060_at_1631', 3], [#, '151429_at_293', 3], [#, '147260_at_36', 3], [#, '152093_at_2220', 4], [#, '151873_at_1786', 4], [#, '150311_at_358', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '150941_f_at_113', 1], [#, '149380_at_1052', 1], [#, '149381_at_595', 1], [#, '149382_at_343', 1], [#, '149384_at_626', 1], [#, '149385_at_909', 1], [#, '149386_at_153', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '142689_at_2195', 3], [#, '147260_at_34', 3], [#, '141538_at_2111', 3], [#, '152093_at_2221', 4], [#, '151873_at_1747', 4], [#, '150311_at_405', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '150941_f_at_111', 1], [#, '149364_at_1814', 1], [#, '149365_at_276', 1], [#, '149368_at_173', 1], [#, '149371_at_1969', 1], [#, '149372_at_632', 1], [#, '149374_at_1908', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151429_at_351', 3], [#, '142689_at_2154', 3], [#, '141538_at_2086', 3], [#, '152093_at_2253', 4], [#, '151873_at_1723', 4], [#, '150311_at_406', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151224_f_at_40', 1], [#, '149352_at_2845', 1], [#, '155039_at_1822', 1], [#, '149354_at_228', 1], [#, '153107_at_1501', 1], [#, '149355_at_446', 1], [#, '152216_at_1907', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '141538_at_2050', 3], [#, '147260_at_29', 3], [#, '151429_at_444', 3], [#, '151873_at_1696', 4], [#, '152093_at_2286', 4], [#, '150311_at_428', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '143052_at_1570', 1], [#, '153297_at_1146', 1], [#, '141292_at_956', 1], [#, '155136_at_3280', 1], [#, '151994_at_924', 1], [#, '154820_at_469', 1], [#, '152906_at_2090', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '155060_at_1834', 3], [#, '147260_at_27', 3], [#, '142689_at_2057', 3], [#, '151873_at_1681', 4], [#, '152093_at_2365', 4], [#, '150311_at_513', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '143052_at_1561', 1], [#, '149339_at_461', 1], [#, '142566_at_6907', 1], [#, '149340_at_389', 1], [#, '149341_at_1305', 1], [#, '149343_at_547', 1], [#, '153316_at_970', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '141538_at_1972', 3], [#, '155060_at_1844', 3], [#, '147260_at_21', 3], [#, '152093_at_2369', 4], [#, '151873_at_1656', 4], [#, '150311_at_569', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '143052_at_1547', 1], [#, '153677_at_593', 1], [#, '142725_at_3484', 1], [#, '154418_at_2357', 1], [#, '149337_at_1771', 1], [#, '149338_at_114', 1], [#, '153664_at_1123', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '155060_at_1866', 3], [#, '147260_at_19', 3], [#, '141538_at_1905', 3], [#, '151873_at_1630', 4], [#, '152093_at_2425', 4], [#, '150311_at_588', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '143052_at_1488', 1], [#, '142725_at_3437', 1], [#, '154418_at_2421', 1], [#, '149337_at_1722', 1], [#, '149338_at_101', 1], [#, '153664_at_1167', 1], [#, '149339_at_383', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '151193_f_at_66', 3], [#, '151241_f_at_31', 5], [#, '151193_f_at_70', 6], [#, '151224_f_at_40', 7], [#, '150941_f_at_119', 7], [#, '150941_f_at_115', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '143052_at_1399', 1], [#, '154464_at_2230', 1], [#, '152047_at_1146', 1], [#, '150835_at_1439', 1], [#, '154168_at_1052', 1], [#, '153210_at_1520', 1], [#, '150817_at_565', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '142169_at_450', 2], [#, '146155_at_129', 2], [#, '152590_at_972', 2], [#, '142115_at_370', 2], [#, '143730_at_1670', 2], [#, '150941_f_at_115', 9]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '143052_at_1395', 1], [#, '151270_r_at_25', 1], [#, '151257_at_31', 1], [#, '151250_at_222', 1], [#, '151229_at_145', 1], [#, '151212_i_at_63', 1], [#, '151207_r_at_79', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '142667_at_1666', 2], [#, '142844_at_1801', 2], [#, '143730_at_1655', 2], [#, '146200_at_740', 2], [#, '145665_at_260', 2], [#, '150941_f_at_113', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '143052_at_1376', 1], [#, '146970_at_795', 1], [#, '142323_at_349', 1], [#, '152548_at_1257', 1], [#, '142085_at_360', 1], [#, '151839_at_572', 1], [#, '147900_at_1316', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '141971_at_425', 2], [#, '152590_at_890', 2], [#, '150643_at_593', 2], [#, '150117_at_272', 2], [#, '146155_at_95', 2], [#, '141331_at_764', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '143052_at_1311', 1], [#, '146844_at_45', 1], [#, '152619_at_980', 1], [#, '147717_at_296', 1], [#, '141654_at_949', 1], [#, '147704_at_309', 1], [#, '151140_at_34', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '152322_at_1081', 2], [#, '150574_at_674', 2], [#, '142012_at_515', 2], [#, '150611_at_681', 2], [#, '146094_at_3507', 2], [#, '143040_at_1502', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '141890_at_423', 1], [#, '146741_at_332', 1], [#, '146978_s_at_613', 1], [#, '142001_r_at_17', 1], [#, '152057_at_746', 1], [#, '153061_at_3626', 1], [#, '147846_at_517', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '143730_at_1571', 2], [#, '143071_at_199', 2], [#, '153690_at_1496', 2], [#, '146572_at_1248', 2], [#, '151196_r_at_69', 2], [#, '142734_at_582', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '154290_at_1576', 1], [#, '150536_at_1846', 1], [#, '142057_at_306', 1], [#, '149536_at_287', 1], [#, '142647_at_483', 1], [#, '152342_at_1443', 1], [#, '150858_at_1203', 1]]]). 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fbgn_exons2affy1_overlaps, [24, [#, [#, '152828_at_1322', 2], [#, '145513_at_1132', 2], [#, '145665_at_155', 2], [#, '145804_at_94', 2], [#, '146094_at_3402', 2], [#, '151831_at_920', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [24, [#, [#, '152253_at_1253', 1], [#, '151549_i_at_495', 1], [#, '142287_at_5287', 1], [#, '150858_at_1274', 1], [#, '152342_at_1587', 1], [#, '142647_at_365', 1], [#, '149536_at_82', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '145121_at_1044', 2], [#, '152828_at_1374', 2], [#, '145513_at_1115', 2], [#, '145665_at_112', 2], [#, '145804_at_88', 2], [#, '143367_at_1268', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '152253_at_1277', 1], [#, '152342_at_1612', 1], [#, '142647_at_311', 1], [#, '149536_at_79', 1], [#, '142057_at_440', 1], [#, '150536_at_1708', 1], [#, '150142_at_1308', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '142968_at_1016', 2], [#, '147307_at_1054', 2], [#, '152828_at_1410', 2], [#, '145513_at_1081', 2], [#, '145804_at_83', 2], [#, '152030_at_2454', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '151555_at_452', 1], [#, '150321_at_786', 1], [#, '149984_at_574', 1], [#, '150288_at_440', 1], [#, '154729_at_1256', 1], [#, '150235_at_482', 1], [#, '153559_at_1188', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '142051_at_710', 2], [#, '143071_at_395', 2], [#, '153690_at_1701', 2], [#, '152030_at_2472', 2], [#, '148950_at_1101', 2], [#, '146572_at_1489', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '151555_at_477', 1], [#, '143703_at_549', 1], [#, '150198_at_145', 1], [#, '153568_at_2595', 1], [#, '153408_at_895', 1], [#, '154631_at_2296', 1], [#, '149802_at_35', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '151831_at_1098', 2], [#, '143071_at_435', 2], [#, '142051_at_734', 2], [#, '153690_at_1718', 2], [#, '142946_at_186', 2], [#, '148950_at_1027', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '154840_at_235', 1], [#, '149689_at_838', 1], [#, '152285_at_955', 1], [#, '151626_at_139', 1], [#, '151157_at_129', 1], [#, '151986_at_1676', 1], [#, '149373_at_477', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '143040_at_1070', 2], [#, '148950_at_1005', 2], [#, '152322_at_1333', 2], [#, '142209_at_639', 2], [#, '143367_at_1495', 2], [#, '153005_at_1202', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '154840_at_217', 1], [#, '151546_i_at_74', 1], [#, '145929_at_1640', 1], [#, '151417_at_35', 1], [#, '145917_at_142', 1], [#, '154703_at_1319', 1], [#, '145904_at_869', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '151241_f_at_37', 1], [#, '145456_at_322', 1], [#, '142630_at_415', 1], [#, '148015_at_1581', 1], [#, '153230_at_2930', 2], [#, '154681_at_1547', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '153483_at_641', 1], [#, '150941_f_at_90', 1], [#, '144004_at_5787', 1], [#, '144775_at_57', 1], [#, '144816_at_1278', 1], [#, '143155_at_2478', 1], [#, '148015_at_1581', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_exons2affy2_overlaps, [14]). +fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy2_overlaps, [4149]). +fb_tsv_pred_stats('total-rows', fbgn_exons2affy2_overlaps, [12905]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [1, 8719, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [2, 1595, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [3, 1248, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [4, 1045, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [5, 922, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [6, 830, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [7, 752, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [8, 699, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [9, 639, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [10, 573, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [11, 508, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [12, 442, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [13, 358, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [14, 207, object]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [1, '', 3969]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [1, 3969, [#, ''], [#, 3969]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [2, '', 11248]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [2, 11248, [#, ''], [#, 11248]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [3, '', 11607]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [3, 11607, [#, ''], [#, 11607]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [4, '', 11816]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [4, 11816, [#, ''], [#, 11816]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [5, '', 11943]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [5, 11943, [#, ''], [#, 11943]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [6, '', 12036]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [6, 12036, [#, ''], [#, 12036]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [7, '', 12116]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [7, 12116, [#, ''], [#, 12116]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [8, '', 12171]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [8, 12171, [#, ''], [#, 12171]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [9, '', 12231]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [9, 12231, [#, ''], [#, 12231]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [10, '', 12300]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [10, 12300, [#, ''], [#, 12300]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [11, '', 12366]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [11, 12366, [#, ''], [#, 12366]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [12, '', 12437]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [12, 12437, [#, ''], [#, 12437]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [13, '', 12525]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [13, 12525, [#, ''], [#, 12525]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [14, '', 12686]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [14, 12686, [#, ''], [#, 12686]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1630536_at_1664', 3], [#, '1633941_a_at_2332', 3], [#, '1632394_s_at_2089', 3], [#, '1625692_s_at_1888', 4], [#, '1627164_at_3410', 4], [#, '1625897_s_at_1066', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1637813_at_4186', 1], [#, '1638283_at_2407', 1], [#, '1639086_s_at_1819', 1], [#, '1631434_at_334', 1], [#, '1634855_s_at_1654', 1], [#, '1636657_at_473', 1], [#, '1641712_at_1957', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1635578_at_1116', 2], [#, '1633941_a_at_2295', 3], [#, '1631833_at_1721', 3], [#, '1625692_s_at_1832', 4], [#, '1635572_at_641', 4], [#, '1625897_s_at_1127', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1636558_a_at_1881', 1], [#, '1628490_at_857', 1], [#, '1641656_at_713', 1], [#, '1630618_at_2197', 1], [#, '1625101_at_335', 1], [#, '1635901_at_939', 1], [#, '1631798_s_at_1021', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1631351_s_at_1022', 2], [#, '1626491_at_1540', 2], [#, '1635572_at_608', 3], [#, '1633941_a_at_2232', 3], [#, '1631833_at_1705', 3], [#, '1625897_s_at_1142', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1636558_a_at_1850', 1], [#, '1631522_x_at_66', 1], [#, '1632440_at_286', 1], [#, '1625460_s_at_89', 1], [#, '1625783_at_502', 1], [#, '1626735_at_200', 1], [#, '1628502_at_164', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1632950_at_1094', 2], [#, '1629590_at_807', 2], [#, '1635578_at_1046', 2], [#, '1635572_at_529', 3], [#, '1631833_at_1657', 3], [#, '1625897_s_at_1160', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1636558_a_at_1823', 1], [#, '1629951_at_775', 1], [#, '1627721_at_1681', 1], [#, '1632946_at_1358', 1], [#, '1630788_at_1473', 1], [#, '1629262_at_502', 1], [#, '1628625_at_1245', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636445_at_196', 2], [#, '1635578_at_1031', 2], [#, '1634667_at_2047', 2], [#, '1631833_at_1617', 3], [#, '1635572_at_481', 3], [#, '1625897_s_at_1229', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636558_a_at_1742', 1], [#, '1636314_at_387', 1], [#, '1625214_at_592', 1], [#, '1633462_at_1757', 1], [#, '1638793_at_441', 1], [#, '1630993_at_814', 1], [#, '1637693_at_840', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636445_at_205', 2], [#, '1628766_at_1592', 2], [#, '1627958_at_364', 2], [#, '1631833_at_1553', 3], [#, '1635572_at_448', 3], [#, '1625897_s_at_1282', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636558_a_at_1725', 1], [#, '1629127_at_687', 1], [#, '1632948_x_at_741', 1], [#, '1631596_at_2406', 1], [#, '1623590_s_at_2676', 1], [#, '1638445_a_at_4372', 1], [#, '1632739_at_505', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1627427_s_at_1090', 2], [#, '1626491_at_1395', 2], [#, '1634933_s_at_300', 2], [#, '1635572_at_432', 3], [#, '1631833_at_1528', 3], [#, '1625897_s_at_1292', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1636558_a_at_1709', 1], [#, '1625051_at_611', 1], [#, '1634488_s_at_341', 1], [#, '1630421_at_597', 1], [#, '1628563_at_1739', 1], [#, '1636412_at_2651', 1], [#, '1634418_at_1457', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1627958_at_416', 2], [#, '1626732_at_695', 2], [#, '1626038_at_1253', 2], [#, '1635572_at_393', 3], [#, '1631833_at_1513', 3], [#, '1625897_s_at_1337', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1636558_a_at_1571', 1], [#, '1632338_a_at_1205', 1], [#, '1641119_at_364', 1], [#, '1627824_at_101', 1], [#, '1632926_at_75', 1], [#, '1631364_at_518', 1], [#, '1639058_at_120', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1630406_at_385', 2], [#, '1631351_s_at_947', 2], [#, '1628766_at_1690', 2], [#, '1631833_at_1487', 3], [#, '1635572_at_378', 3], [#, '1625897_s_at_1362', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1636558_a_at_1561', 1], [#, '1632926_at_17', 1], [#, '1631364_at_547', 1], [#, '1639058_at_103', 1], [#, '1628447_at_492', 1], [#, '1626455_s_at_399', 1], [#, '1638766_at_109', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1630406_at_337', 2], [#, '1629590_at_1045', 2], [#, '1633270_at_394', 2], [#, '1631833_at_1469', 3], [#, '1635572_at_297', 3], [#, '1625897_s_at_1444', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1636558_a_at_1482', 1], [#, '1635345_at_50', 1], [#, '1634677_at_643', 1], [#, '1635112_at_279', 1], [#, '1641708_at_3032', 1], [#, '1629586_at_1283', 1], [#, '1640473_at_4678', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1632147_at_448', 2], [#, '1629590_at_1085', 2], [#, '1634176_a_at_438', 2], [#, '1635572_at_234', 3], [#, '1631833_at_1450', 3], [#, '1625897_s_at_1488', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1636558_a_at_1425', 1], [#, '1638214_at_467', 1], [#, '1637070_at_754', 1], [#, '1636893_at_55', 1], [#, '1639804_at_1221', 1], [#, '1628992_at_20', 1], [#, '1627697_at_763', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1634933_s_at_139', 2], [#, '1627958_at_512', 2], [#, '1627427_s_at_891', 2], [#, '1627339_at_219', 2], [#, '1631833_at_1435', 3], [#, '1635572_at_209', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1636558_a_at_1397', 1], [#, '1638214_at_453', 1], [#, '1637070_at_778', 1], [#, '1636893_at_43', 1], [#, '1639804_at_1258', 1], [#, '1628992_at_17', 1], [#, '1627697_at_738', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1634933_s_at_106', 2], [#, '1632147_at_514', 2], [#, '1633837_at_546', 2], [#, '1627339_at_124', 2], [#, '1631833_at_1404', 3], [#, '1635572_at_157', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1636558_a_at_1379', 1], [#, '1638214_at_432', 1], [#, '1636893_at_32', 1], [#, '1639804_at_1271', 1], [#, '1628992_at_15', 1], [#, '1627697_at_714', 1], [#, '1635345_at_43', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1627339_at_73', 2], [#, '1626491_at_1063', 2], [#, '1634159_s_at_35', 2], [#, '1626732_at_641', 2], [#, '1631833_at_1383', 3], [#, '1635572_at_129', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1636558_a_at_1365', 1], [#, '1628563_at_1922', 1], [#, '1636412_at_2551', 1], [#, '1634418_at_1571', 1], [#, '1632338_a_at_1456', 1], [#, '1641119_at_581', 1], [#, '1626455_s_at_584', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp_expanded, [11]). +fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp_expanded, [0]). +fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp_expanded, [35732]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [1, 1, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [2, 27, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [3, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [4, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [5, 11358, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [6, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [7, 9, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [8, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [9, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [10, 30803, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [11, 30803, object]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [5, '', 11174]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [5, 11174, [#, ''], [#, 11174]]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [9, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [10, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [10, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [11, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [11, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, 'C_D_box_snoRNA_gene', 145], [#, tRNA_gene, 312], [#, pseudogene, 365], [#, antisense_lncRNA_gene, 621], [#, miRNA_gene, 747], [#, lncRNA_gene, 2374], [#, protein_coding_gene, 30802]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, mt_LSU_rRNA_gene, 1], [#, mt_SSU_rRNA_gene, 1], [#, 'RNase_MRP_RNA_gene', 1], [#, cytosolic_rRNA_28S_gene, 2], [#, 'RNA_7SK_gene', 2]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, heph, 25], [#, trol, 25], [#, 'CAP', 28], [#, 'Svil', 31], [#, 'mod(mdg4)', 31], [#, para, 60], [#, 'Dscam1', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, 'CG16953', 1], [#, 'Tsen2', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, hephaestus, 25], [#, 'CAP', 28], [#, 'modifier of mdg4', 31], [#, 'Supervillin', 31], [#, paralytic, 60], [#, 'Down syndrome cell adhesion molecule 1', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, 'long non-coding RNA:CR46535', 1], [#, 'Gustatory receptor 22e', 1], [#, 'long non-coding RNA:CR45471', 1], [#, 'Gustatory receptor 36a', 1], [#, 'Gustatory receptor 36b', 1], [#, 'Gustatory receptor 36c', 1], [#, 'Gustatory receptor 59a', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG31000', 25], [#, 'CG33950', 25], [#, 'CG18408', 28], [#, 'CG45186', 31], [#, 'CG32491', 31], [#, 'CG9907', 60], [#, 'CG17800', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG16953', 1], [#, 'CG31812', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485], [#, ncRNA, 3059], [#, mRNA, 30802]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, snRNA, 32], [#, rRNA, 115], [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'p115-PB', 1], [#, 'meso18E-PA', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PC', 1], [#, 'rept-PB', 1], [#, 'a-PA', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'a-PA', 1], [#, 'meso18E-PC', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PA', 1], [#, 'p115-PB', 1], [#, 'p115-PA', 1], [#, 'pins-PA', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp, [3]). +fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp, [0]). +fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp, [35732]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [1, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [2, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [3, 30803, object]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp, [3, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [3, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_gleanr, [4]). +fb_tsv_pred_stats('duplicated-rows', fbgn_gleanr, [535]). +fb_tsv_pred_stats('total-rows', fbgn_gleanr, [174893]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [1, 11, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [2, 174055, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [3, 174055, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [4, 174322, object]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [1, [#, [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038], [#, 'Dpse', 16475], [#, 'Dyak', 16483], [#, 'Dsec', 16945], [#, 'Dper', 17373]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [1, [#, [#, 'Dvir', 14755], [#, 'Dmoj', 14922], [#, 'Dgri', 15319], [#, 'Dana', 15329], [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [2, [#, [#, 'Dpse\\GA30155', 4], [#, 'Dpse\\GA30065', 4], [#, 'Dpse\\GA30499', 4], [#, 'Dpse\\GA30462', 4], [#, 'Dpse\\GA30119', 5], [#, 'Dpse\\GA30479', 5], [#, 'Dpse\\GA30442', 11]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [2, [#, [#, 'Dper\\GL22947', 1], [#, 'Dwil\\GK16453', 1], [#, 'Dwil\\GK11213', 1], [#, 'Dwil\\GK16551', 1], [#, 'Dwil\\GK11264', 1], [#, 'Dwil\\GK11214', 1], [#, 'Dwil\\GK11265', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0263057', 4], [#, 'FBgn0263238', 4], [#, 'FBgn0265036', 4], [#, 'FBgn0264756', 4], [#, 'FBgn0262499', 5], [#, 'FBgn0264773', 5], [#, 'FBgn0264579', 11]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0160537', 1], [#, 'FBgn0218455', 1], [#, 'FBgn0213224', 1], [#, 'FBgn0218553', 1], [#, 'FBgn0213275', 1], [#, 'FBgn0213225', 1], [#, 'FBgn0213276', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [4, [#, [#, dgri_GLEANR_4274, 2], [#, dana_GLEANR_19894, 2], [#, dgri_GLEANR_7321, 2], [#, dgri_GLEANR_14174, 2], [#, dpse_GLEANR_5123, 3], [#, dpse_GLEANR_4701, 4], [#, dpse_GLEANR_8878, 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [4, [#, [#, dsim_GLEANR_6342, 1], [#, dwil_GLEANR_16628, 1], [#, dwil_GLEANR_11555, 1], [#, dwil_GLEANR_11556, 1], [#, dwil_GLEANR_11460, 1], [#, dwil_GLEANR_11461, 1], [#, dwil_GLEANR_11557, 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_NAseq_Uniprot, [9]). +fb_tsv_pred_stats('duplicated-rows', fbgn_NAseq_Uniprot, [0]). +fb_tsv_pred_stats('total-rows', fbgn_NAseq_Uniprot, [1316132]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [1, 214968, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [2, 557, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [3, 214968, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [4, 762485, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [5, 69341, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [6, 193395, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [7, 208900, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [8, 34349, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [9, 30241, object]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [4, '', 438122]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [4, 438122, [#, ''], [#, 438122]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [5, '', 1246520]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [5, 1246520, [#, ''], [#, 1246520]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [6, '', 1121258]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [6, 1121258, [#, ''], [#, 1121258]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [7, '', 1107233]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [7, 1107233, [#, ''], [#, 1107233]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [8, '', 1281783]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [8, 1281783, [#, ''], [#, 1281783]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [9, '', 1285892]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [9, 1285892, [#, ''], [#, 1285892]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, sta, 1332], [#, 'RpL5', 1362], [#, alphaTub84B, 1442], [#, 'Hsc70-4', 1611], [#, ninaE, 1699], [#, eEF2, 2370], [#, eEF1alpha1, 2383]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, 'Hsap\\FSBP', 1], [#, 'Dyak\\GE14653', 1], [#, 'Dyak\\GE14652', 1], [#, 'Dere\\GG16178', 1], [#, 'Dyak\\GE14651', 1], [#, 'Dyak\\GE14650', 1], [#, 'Dyak\\GE14649', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Dper', 34397], [#, 'Dmoj', 34929], [#, 'Dvir', 35196], [#, 'Dsim', 37463], [#, 'Dana', 38929], [#, 'Dyak', 39546], [#, 'Dmel', 938032]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Cpac', 1], [#, 'Hvul', 1], [#, 'Zghe', 1], [#, 'Dhye', 1], [#, 'Dabu', 1], [#, 'Xlae', 1], [#, 'Cfum', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0003517', 1332], [#, 'FBgn0064225', 1362], [#, 'FBgn0003884', 1442], [#, 'FBgn0266599', 1611], [#, 'FBgn0002940', 1699], [#, 'FBgn0000559', 2370], [#, 'FBgn0284245', 2383]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0289485', 1], [#, 'FBgn0232248', 1], [#, 'FBgn0232247', 1], [#, 'FBgn0108413', 1], [#, 'FBgn0232246', 1], [#, 'FBgn0232245', 1], [#, 'FBgn0232244', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'CH379071', 439], [#, 'AE014298', 5350], [#, 'AE014134', 5651], [#, 'AE014296', 5875], [#, 'AE013599', 6054], [#, 'AE014297', 7206]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'J01122', 1], [#, 'GH739917', 1], [#, 'GH740238', 1], [#, 'GH740504', 1], [#, 'GH740582', 1], [#, 'GH740722', 1], [#, 'GH741128', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AAA28968', 9], [#, 'CAA38960', 9], [#, 'AAA28969', 9], [#, 'AAA28966', 9], [#, 'AAC47002', 9], [#, 'AAA28425', 10]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AFH08132', 1], [#, 'AAG22409', 1], [#, 'AAL28803', 1], [#, 'AAL57756', 1], [#, 'AAF46261', 1], [#, 'AAF46262', 1], [#, 'AAM29624', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'P02283', 24], [#, 'P84052', 31], [#, 'Q76FD7', 40], [#, 'Q76FE2', 47], [#, 'Q76N00', 50], [#, 'Q76FD9', 65]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'A1ZAK1', 1], [#, 'B4R037', 1], [#, 'B4R038', 1], [#, 'B4R040', 1], [#, 'B4R043', 1], [#, 'B4R044', 1], [#, 'B4R047', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6632090.0, 1], [#, 6627682.0, 1], [#, 6631334.0, 1], [#, 6631316.0, 1], [#, 6634144.0, 1], [#, 6624472.0, 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6611558.0, 1], [#, 6634144.0, 1], [#, 6631316.0, 1], [#, 6631334.0, 1], [#, 6627682.0, 1], [#, 6632090.0, 1], [#, 6632175.0, 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_168111', 1], [#, 'NM_168136', 1], [#, 'NM_168145', 1], [#, 'NM_168144', 1], [#, 'NM_001169879', 1], [#, 'NM_134950', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_141332', 1], [#, 'NM_001274510', 1], [#, 'NM_001274509', 1], [#, 'NM_001259707', 1], [#, 'NM_001169879', 1], [#, 'NM_168112', 1], [#, 'NM_168113', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_001137539', 1], [#, 'NP_001287647', 1], [#, 'NP_001287648', 1], [#, 'NP_001104474', 1], [#, 'NP_001188370', 1], [#, 'NP_001287646', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_648102', 1], [#, 'NP_001287648', 1], [#, 'NP_001287647', 1], [#, 'NP_001137539', 1], [#, 'NP_001104473', 1], [#, 'NP_001104472', 1], [#, 'NP_001104471', 1]]]). +fb_tsv_pred_stats('num-columns', gene_functional_complementation, [5]). +fb_tsv_pred_stats('duplicated-rows', gene_functional_complementation, [0]). +fb_tsv_pred_stats('total-rows', gene_functional_complementation, [463]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [1, 319, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [2, 319, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [3, 376, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [4, 376, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [5, 392, object]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [1, [#, [#, 'Lrrk', 5], [#, 'Marf', 5], [#, 'Pink1', 5], [#, oc, 7], [#, 'Nrg', 7], [#, cpx, 8], [#, 'TBPH', 8]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [1, [#, [#, 'ATP6AP2', 1], [#, ci, 1], [#, cindr, 1], [#, clu, 1], [#, cn, 1], [#, cpa, 1], [#, csw, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0038816', 5], [#, 'FBgn0029870', 5], [#, 'FBgn0029891', 5], [#, 'FBgn0004102', 7], [#, 'FBgn0264975', 7], [#, 'FBgn0041605', 8], [#, 'FBgn0025790', 8]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0037671', 1], [#, 'FBgn0004859', 1], [#, 'FBgn0027598', 1], [#, 'FBgn0034087', 1], [#, 'FBgn0000337', 1], [#, 'FBgn0034577', 1], [#, 'FBgn0000382', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\MFN2', 4], [#, 'Hsap\\SOD1', 4], [#, 'Hsap\\L1CAM', 4], [#, 'Hsap\\PARK7', 4], [#, 'Hsap\\PINK1', 5], [#, 'Hsap\\LRRK2', 5], [#, 'Hsap\\TARDBP', 7]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\ATP6AP2', 1], [#, 'Hsap\\EIF4A2', 1], [#, 'Hsap\\DROSHA', 1], [#, 'Hsap\\GRAP', 1], [#, 'Hsap\\SUPT16H', 1], [#, 'Hsap\\SRCAP', 1], [#, 'Hsap\\PIN1', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0265221', 4], [#, 'FBgn0024960', 4], [#, 'FBgn0026071', 4], [#, 'FBgn0086735', 4], [#, 'FBgn0086479', 5], [#, 'FBgn0262113', 5], [#, 'FBgn0261084', 7]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0262153', 1], [#, 'FBgn0289163', 1], [#, 'FBgn0289120', 1], [#, 'FBgn0286886', 1], [#, 'FBgn0289345', 1], [#, 'FBgn0283711', 1], [#, 'FBgn0288530', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0216943', 3], [#, 'FBrf0210782', 3], [#, 'FBrf0146918', 3], [#, 'FBrf0242427', 3], [#, 'FBrf0184161', 4], [#, 'FBrf0252066', 4], [#, 'FBrf0212111', 4]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0211368', 1], [#, 'FBrf0101988', 1], [#, 'FBrf0193931', 1], [#, 'FBrf0227402', 1], [#, 'FBrf0230449', 1], [#, 'FBrf0188025', 1], [#, 'FBrf0174932', 1]]]). +fb_tsv_pred_stats('num-columns', gene_genetic_interactions, [6]). +fb_tsv_pred_stats('duplicated-rows', gene_genetic_interactions, [0]). +fb_tsv_pred_stats('total-rows', gene_genetic_interactions, [20321]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [1, 2958, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [2, 2958, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [3, 4615, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [4, 4615, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [5, 2, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [6, 5428, object]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [6, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [1, [#, [#, 'Egfr', 168], [#, pbl, 173], [#, 'H', 173], [#, pnr, 174], [#, w, 181], [#, 'Ras85D', 365], [#, 'N', 384]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [1, [#, [#, 'Fit1', 1], [#, 'Gtpx', 1], [#, 'kat-60L1', 1], [#, 'Abl|fax', 1], [#, 'rpr|hid', 1], [#, 'Gfrl', 1], [#, 'mod(mdg4)|sc', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0003731', 168], [#, 'FBgn0003041', 173], [#, 'FBgn0001169', 173], [#, 'FBgn0003117', 174], [#, 'FBgn0003996', 181], [#, 'FBgn0003205', 365], [#, 'FBgn0004647', 384]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0035498', 1], [#, 'FBgn0035438', 1], [#, 'FBgn0037375', 1], [#, 'FBgn0000017|FBgn0014163', 1], [#, 'FBgn0011706|FBgn0003997', 1], [#, 'FBgn0262869', 1], [#, 'FBgn0002781|FBgn0004170', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [3, [#, [#, wg, 110], [#, puc, 117], [#, 'Ras85D', 141], [#, 'Egfr', 158], [#, 'Diap1', 163], [#, 'N', 174], [#, bsk, 181]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [3, [#, [#, 'Su(tor)278-22', 1], [#, 'CG32982', 1], [#, 'CG15599', 1], [#, 'Su(E1)-A', 1], [#, 'mir-13b-2', 1], [#, 'EP1095', 1], [#, 'S(Sev-CycE)D28', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0284084', 110], [#, 'FBgn0243512', 117], [#, 'FBgn0003205', 141], [#, 'FBgn0003731', 158], [#, 'FBgn0260635', 163], [#, 'FBgn0004647', 174], [#, 'FBgn0000229', 181]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0026335', 1], [#, 'FBgn0052982', 1], [#, 'FBgn0030667', 1], [#, 'FBgn0262767', 1], [#, 'FBgn0262421', 1], [#, 'FBgn0062701', 1], [#, 'FBgn0041783', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0190765', 83], [#, 'FBrf0188528', 88], [#, 'FBrf0190751', 89], [#, 'FBrf0187664', 105], [#, 'FBrf0147055', 149], [#, 'FBrf0199094', 151], [#, 'FBrf0241270', 160]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0221584', 1], [#, 'FBrf0231072', 1], [#, 'FBrf0102734', 1], [#, 'FBrf0190193', 1], [#, 'FBrf0229219', 1], [#, 'FBrf0226148', 1], [#, 'FBrf0208690', 1]]]). +fb_tsv_pred_stats('num-columns', gene_groups_HGNC, [4]). +fb_tsv_pred_stats('duplicated-rows', gene_groups_HGNC, [0]). +fb_tsv_pred_stats('total-rows', gene_groups_HGNC, [1711]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [1, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [2, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [3, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [4, 506, object]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_groups_HGNC, [4, '', 1192]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [4, 1192, [#, ''], [#, 1192]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000526', 2], [#, 'FBgg0000112', 2], [#, 'FBgg0000738', 2], [#, 'FBgg0000588', 2], [#, 'FBgg0000792', 2], [#, 'FBgg0000083', 3], [#, 'FBgg0000279', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000451', 1], [#, 'FBgg0000651', 1], [#, 'FBgg0001307', 1], [#, 'FBgg0000697', 1], [#, 'FBgg0000072', 1], [#, 'FBgg0000437', 1], [#, 'FBgg0001352', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [2, [#, [#, 'SM', 2], [#, 'INX', 2], [#, 'PRDTF', 2], [#, 'CAC-U', 2], [#, 'E2FTF', 2], [#, 'SYT', 3], [#, 'RPD3-HDA1', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [2, [#, [#, 'TRNA-C-THR-CGT', 1], [#, 'NAT', 1], [#, 'APAS', 1], [#, 'SLC33', 1], [#, 'ADAM', 1], [#, 'TRNA-C-LEU-TAA', 1], [#, 'N-GH', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [3, [#, [#, 'SPLICEOSOMAL SM PROTEINS', 2], [#, 'INNEXINS', 2], [#, 'PAIRED TRANSCRIPTION FACTORS', 2], [#, 'UNCLASSIFIED CALCIUM CHANNEL-FORMING SUBUNITS', 2], [#, 'E2F TRANSCRIPTION FACTORS', 2], [#, 'SYNAPTOTAGMINS & SYNAPTOTAGMIN-LIKE PROTEINS', 3], [#, 'RPD3/HDA1 LYSINE DEACETYLASES', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [3, [#, [#, 'CYTOSOLIC THREONINE-CGT TRANSFER RNAS', 1], [#, 'N-TERMINAL ACETYLTRANSFERASE CATALYTIC SUBUNITS', 1], [#, 'ASPARAGINASES', 1], [#, 'SLC33 ACETYL-COA TRANSPORTERS', 1], [#, 'ADAM METALLOPROTEASES', 1], [#, 'CYTOSOLIC LEUCINE-TAA TRANSFER RNAS', 1], [#, 'N-GLYCOSYL HYDROLASES', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [4, [#, [#, 1281.0, 2], [#, 363.0, 2], [#, 434.0, 2], [#, 816.0, 2], [#, 1254.0, 2], [#, 669.0, 2]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [4, [#, [#, 346.0, 1], [#, 1654.0, 1], [#, 1585.0, 1], [#, 1419.0, 1], [#, 2154.0, 1], [#, 262.0, 1], [#, 1027.0, 1]]]). +fb_tsv_pred_stats('num-columns', gene_group_data, [7]). +fb_tsv_pred_stats('duplicated-rows', gene_group_data, [0]). +fb_tsv_pred_stats('total-rows', gene_group_data, [10957]). +fb_tsv_pred_stats('unique-values', gene_group_data, [1, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [2, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [3, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [4, 389, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [5, 389, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [6, 8251, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [7, 8251, object]). +fb_tsv_pred_stats('missing-values', gene_group_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_group_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_group_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [4, '', 1106]). +fb_tsv_pred_stats('missing-values', gene_group_data, [4, 1106, [#, ''], [#, 1106]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [5, '', 1106]). +fb_tsv_pred_stats('missing-values', gene_group_data, [5, 1106, [#, ''], [#, 1106]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [6, '', 405]). +fb_tsv_pred_stats('missing-values', gene_group_data, [6, 405, [#, ''], [#, 405]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [7, '', 405]). +fb_tsv_pred_stats('missing-values', gene_group_data, [7, 405, [#, ''], [#, 405]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [1, [#, [#, 'FBgg0000128', 98], [#, 'FBgg0001176', 105], [#, 'FBgg0001186', 106], [#, 'FBgg0001078', 114], [#, 'FBgg0000097', 120], [#, 'FBgg0001077', 136], [#, 'FBgg0000732', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [1, [#, [#, 'FBgg0001756', 1], [#, 'FBgg0000834', 1], [#, 'FBgg0001677', 1], [#, 'FBgg0000396', 1], [#, 'FBgg0000921', 1], [#, 'FBgg0000512', 1], [#, 'FBgg0000662', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [2, [#, [#, 'E3-RING-U', 98], [#, 'CPR', 105], [#, 'CBD', 106], [#, 'SP-T', 114], [#, 'OR', 120], [#, 'S1A-NPH', 136], [#, 'ZF-C2H2', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [2, [#, [#, 'UFM1', 1], [#, 'GH47', 1], [#, 'GH99', 1], [#, 'TRNA-C-ASP', 1], [#, 'MDH', 1], [#, 'KCN', 1], [#, 'SLC7', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [3, [#, [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'CPR CUTICLE PROTEIN FAMILY', 105], [#, 'CHITIN BINDING DOMAIN-CONTAINING PROTEINS', 106], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114], [#, 'ODORANT RECEPTORS', 120], [#, 'S1A NON-PEPTIDASE HOMOLOGS', 136], [#, 'C2H2 ZINC FINGER TRANSCRIPTION FACTORS', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [3, [#, [#, 'UFM1 PROTEINS', 1], [#, 'CLASS I ALPHA-MANNOSIDASES', 1], [#, 'ENDO-ALPHA MANNOSIDASES', 1], [#, 'CYTOSOLIC ASPARTIC ACID TRANSFER RNAS', 1], [#, 'MALATE DEHYDROGENASES', 1], [#, 'POTASSIUM CHANNEL SUBUNITS', 1], [#, 'SLC7 FAMILY OF AMINO ACID TRANSPORTERS', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [4, [#, [#, 'FBgg0001178', 162], [#, 'FBgg0001841', 178], [#, 'FBgg0001076', 190], [#, 'FBgg0000729', 277], [#, 'FBgg0000537', 318], [#, 'FBgg0000686', 392]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [4, [#, [#, 'FBgg0001357', 1], [#, 'FBgg0000408', 1], [#, 'FBgg0001039', 1], [#, 'FBgg0001844', 2], [#, 'FBgg0001637', 2], [#, 'FBgg0000582', 2], [#, 'FBgg0000130', 2]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [5, [#, [#, 'CP', 162], [#, 'OXPHOS-V', 178], [#, 'S1AP', 190], [#, 'ZN-TF', 277], [#, 'SPL-INT', 318], [#, 'SLC', 392]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [5, [#, [#, 'ETH', 1], [#, 'TRNA-C-SEC', 1], [#, 'OXRPX', 1], [#, 'PSM-G', 2], [#, 'LADAC', 2], [#, 'IC', 2], [#, 'RP', 2]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [6, [#, [#, 'FBgn0261933', 10], [#, 'FBgn0000426', 13], [#, 'FBgn0261790', 13], [#, 'FBgn0261791', 13], [#, 'FBgn0023167', 13], [#, 'FBgn0262601', 13]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [6, [#, [#, 'FBgn0002565', 1], [#, 'FBgn0052671', 1], [#, 'FBgn0262518', 1], [#, 'FBgn0037364', 1], [#, 'FBgn0005586', 1], [#, 'FBgn0015791', 1], [#, 'FBgn0015795', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [7, [#, [#, 'SmD1', 10], [#, 'SmF', 13], [#, 'SmE', 13], [#, 'SNRPG', 13], [#, 'SmD3', 13], [#, 'SmB', 13]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [7, [#, [#, 'Lsp2', 1], [#, 'Rab9Fa', 1], [#, 'Rab8', 1], [#, 'Rab23', 1], [#, 'Rab3', 1], [#, 'Rab14', 1], [#, 'Rab7', 1]]]). +fb_tsv_pred_stats('num-columns', gene_map_table, [6]). +fb_tsv_pred_stats('duplicated-rows', gene_map_table, [0]). +fb_tsv_pred_stats('total-rows', gene_map_table, [245829]). +fb_tsv_pred_stats('unique-values', gene_map_table, [1, 542, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [2, 245829, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [3, 245829, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [4, 1716, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [5, 8138, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [6, 17721, object]). +fb_tsv_pred_stats('missing-values', gene_map_table, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_map_table, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_map_table, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [4, '', 208914]). +fb_tsv_pred_stats('missing-values', gene_map_table, [4, 208914, [#, ''], [#, 208914]]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [5, '', 222613]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [5, -, 105]). +fb_tsv_pred_stats('missing-values', gene_map_table, [5, 222718, [#, '', -], [#, 222613, 105]]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [6, '', 227926]). +fb_tsv_pred_stats('missing-values', gene_map_table, [6, 227926, [#, ''], [#, 227926]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [1, [#, [#, 'Dper', 18137], [#, 'Dana', 18521], [#, 'Dwil', 18542], [#, 'Dyak', 19506], [#, 'Dsim', 20501], [#, 'Dpse', 22460], [#, 'Dmel', 31755]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [1, [#, [#, 'Dmos', 1], [#, 'Dsch', 1], [#, 'Dprg', 1], [#, 'Dpme', 1], [#, 'Dmds', 1], [#, 'Dbis', 1], [#, 'Dsut', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [4, [#, [#, '1-', 1161], [#, 'XL-', 1883], [#, '4-', 2182], [#, 'XR-', 2261], [#, '3-', 3567], [#, '2-', 4139]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [4, [#, [#, '2-[90]', 1], [#, '3-50-62', 1], [#, '1-38.4', 1], [#, '3-[76]', 1], [#, '3-[25]', 1], [#, '1-[61]', 1], [#, '2-[24]', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [5, [#, [#, '61-100', 47], [#, '39D5-39D5', 47], [#, '21E2-21E2', 73], [#, '56E2-56E2', 123], [#, '21-60', 132]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [5, [#, [#, '92A2-92A3', 1], [#, '18E5-18F1', 1], [#, '78A2-78B1', 1], [#, '95C5-95C8', 1], [#, '18B8-18B8', 1], [#, '61F2-61F3', 1], [#, '53A2-53A3', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [6, [#, [#, '2R:10351533..10352161(-1)', 3], [#, '2R:13209809..13212237(-1)', 3], [#, '3R:21365609..21368279(1)', 3], [#, '2R:21667541..21669916(-1)', 4], [#, '3R:13813109..13814648(1)', 4], [#, '3R:21355692..21359768(-1)', 5]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [6, [#, [#, '3R:19373757..19374789(-1)', 1], [#, '3L:11574764..11577044(-1)', 1], [#, '3L:11572797..11574663(-1)', 1], [#, 'X:20178755..20179729(-1)', 1], [#, '3L:10692530..10693167(-1)', 1], [#, '3R:25493481..25495161(-1)', 1], [#, 'X:20186630..20187604(-1)', 1]]]). +fb_tsv_pred_stats('num-columns', gene_rpkm_matrix, [170]). +fb_tsv_pred_stats('duplicated-rows', gene_rpkm_matrix, [0]). +fb_tsv_pred_stats('total-rows', gene_rpkm_matrix, [17747]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [1, 17747, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [2, 17747, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [3, 11214, object]). +fb_tsv_pred_stats('num-columns', gene_rpkm_report, [12]). +fb_tsv_pred_stats('duplicated-rows', gene_rpkm_report, [0]). +fb_tsv_pred_stats('total-rows', gene_rpkm_report, [2928711]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [1, 1, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [2, 17748, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [3, 17748, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [4, 7, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [5, 7, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [6, 166, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [7, 166, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [8, 5113, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [9, 8, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [10, 6776, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [11, 5412, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [12, 2, object]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [9, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_rpkm_report, [10, '', 60536]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [10, 60536, [#, ''], [#, 60536]]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [12, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0053410', 166], [#, 'FBgn0053411', 166], [#, 'FBgn0053412', 166], [#, 'FBgn0053413', 166], [#, 'FBgn0053414', 166], [#, 'FBgn0053408', 166], [#, 'FBgn0038694', 166]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0267595', 40], [#, 'FBgn0013691', 42], [#, 'FBgn0013673', 42], [#, 'FBgn0013701', 42], [#, 'FBgn0013700', 42], [#, 'FBgn0013674', 42], [#, 'FBgn0013675', 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [3, [#, [#, '5SrRNA:CR33410', 166], [#, '5SrRNA:CR33411', 166], [#, '5SrRNA:CR33412', 166], [#, '5SrRNA:CR33413', 166], [#, '5SrRNA:CR33414', 166], [#, '5SrRNA:CR33408', 166], [#, 'CG5217', 166]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [3, [#, [#, 'CR45933', 40], [#, 'mt:tRNA:Asp-GTC', 42], [#, 'mt:ATPase8', 42], [#, 'mt:tRNA:Asn-GTT', 42], [#, 'mt:tRNA:Met-CAT', 42], [#, 'mt:CoI', 42], [#, 'mt:CoII', 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0000235', 17711], [#, 'FBlc0000234', 17711], [#, 'FBlc0000233', 17711], [#, 'FBlc0000229', 17711], [#, 'FBlc0000217', 17711], [#, 'FBlc0000251', 17711], [#, 'FBlc0000250', 17711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0003639', 17545], [#, 'FBlc0003637', 17545], [#, 'FBlc0003636', 17545], [#, 'FBlc0003635', 17545], [#, 'FBlc0003634', 17545], [#, 'FBlc0003633', 17545], [#, 'FBlc0003632', 17545]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [7, [#, [#, mE_mRNA_P8_fat, 17711], [#, mE_mRNA_WPP_saliv, 17711], [#, mE_mRNA_WPP_fat, 17711], [#, mE_mRNA_L3_Wand_imag_disc, 17711], [#, mE_mRNA_A_MateM_4d_testis, 17711], [#, mE_mRNA_A_4d_Paraquat_10mM, 17711], [#, mE_mRNA_A_4d_Paraquat_5mM, 17711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [7, [#, [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum', 17545]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [8, [#, [#, 6, 67267], [#, 5, 76452], [#, 4, 89006], [#, 3, 106255], [#, 2, 139559], [#, 1, 256023], [#, 0, 1229976]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [8, [#, [#, 4755, 1], [#, 3974, 1], [#, 2566, 1], [#, 3991, 1], [#, 10214, 1], [#, 15694, 1], [#, 3308, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [9, [#, [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837], [#, 0, 1229976]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [9, [#, [#, 7, 12019], [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [10, [#, [#, 45.0, 5314], [#, 72, 7512], [#, 44.0, 8878], [#, 72.0, 11038], [#, 73, 11536], [#, 135.0, 17264]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [10, [#, [#, 2235, 15], [#, 939, 42], [#, 667, 42], [#, 155, 42], [#, 1536, 42], [#, 354, 42], [#, 290, 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [11, [#, [#, 595, 4980], [#, 74, 5098], [#, 45, 5872], [#, 44, 9390], [#, 135, 17014], [#, 73, 17014], [#, 72, 18668]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [11, [#, [#, 62, 42], [#, 63, 42], [#, 16924, 82], [#, 230, 82], [#, 3528, 82], [#, 193, 82], [#, 16779, 84]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). +fb_tsv_pred_stats('num-columns', gene_snapshots, [5]). +fb_tsv_pred_stats('duplicated-rows', gene_snapshots, [0]). +fb_tsv_pred_stats('total-rows', gene_snapshots, [13985]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [1, 13985, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [2, 13985, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [3, 7833, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [4, 61, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [5, 3652, object]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_snapshots, [3, -, 6153]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [3, 6153, [#, -], [#, 6153]]). +fb_tsv_pred_stats('null-value-count', gene_snapshots, [4, -, 10334]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [4, 10334, [#, -], [#, 10334]]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [3, [#, [#, 'Carbonic anhydrase 2', 1], [#, 'PRL-1 phosphatase', 1], [#, tricornered, 1], [#, kurz, 1], [#, 'beaten path IV', 1], [#, 'male sterile (2) 35Ci', 1]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [3, [#, [#, 'Receptor expression enhancing protein A', 1], [#, tricornered, 1], [#, 'PRL-1 phosphatase', 1], [#, 'Carbonic anhydrase 2', 1], [#, 'sugar transporter 3', 1], [#, spt4, 1], [#, 'Imitation SWI', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [4, [#, [#, 20190919.0, 144], [#, 20190926.0, 198], [#, 20190912.0, 206], [#, 20190321.0, 222], [#, 20190307.0, 862], [#, 20190314.0, 1067]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [4, [#, [#, 20220901.0, 1], [#, 20200924.0, 1], [#, 20200730.0, 1], [#, 20200709.0, 1], [#, 20190725.0, 1], [#, 20210204.0, 1], [#, 20160630.0, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [5, [#, [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'dachshund (dac) encodes a transcriptional cofactor that physically interacts with several other retinal determination proteins, including those encoded by eya and so, and regulates eye, leg, gonad, and brain development.', 1], [#, 'Contributions welcome.', 10334]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [5, [#, [#, 'Down syndrome cell adhesion molecule 2 (Dscam2) encodes a transmembrane protein. Its alternative splicing produces two biochemically distinct homophilic binding proteins expressed in different cells. It can mediate both repulsion and adhesion between neurons and contributes to boundary formation, neurite targeting and synapse formation in the brain.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'expanded (ex) encodes a FERM-domain containing protein that localizes to apical cell-cell junctions, where it promotes Hippo signaling by physically interacting with multiple Hippo pathway components. Through its regulation of Hippo signaling, the product of ex functions as an inhibitor of growth.', 1]]]). +fb_tsv_pred_stats('num-columns', ncRNA_genes_, [2]). +fb_tsv_pred_stats('duplicated-rows', ncRNA_genes_, [145327]). +fb_tsv_pred_stats('total-rows', ncRNA_genes_, [212303]). +fb_tsv_pred_stats('unique-values', ncRNA_genes_, [1, 66975, object]). +fb_tsv_pred_stats('unique-values', ncRNA_genes_, [2, 3, object]). +fb_tsv_pred_stats('missing-values', ncRNA_genes_, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', ncRNA_genes_, [2, '', 21161]). +fb_tsv_pred_stats('missing-values', ncRNA_genes_, [2, 21161, [#, ''], [#, 21161]]). +fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [1, [#, [#, ' \\gca_accession\\: \\GCA_000001215.4\\, ', 4566], [#, ' \\exons\\: [', 4566], [#, ' ', 4566], [#, ' }', 5311], [#, ' ', 5534], [#, ' ', 6494], [#, ' ], ', 13710]]]). +fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\endPosition\\: 23114377', 1], [#, ' \\startPosition\\: 23113577, ', 1], [#, ' \\endPosition\\: 23114049', 1], [#, ' \\geneId\\: \\FLYBASE:FBgn0266009\\, ', 1], [#, ' \\symbol\\: \\lncRNA:CR44782\\, ', 1], [#, ' \\url\\: \\http://flybase.org/reports/FBgn0266009.html\\, ', 1]]]). +fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [2, [#, [#, '}RR42320\\', 1], [#, '}RR42263\\', 1]]]). +fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [2, [#, [#, '}RR42263\\', 1], [#, '}RR42320\\', 1]]]). +fb_tsv_pred_stats('num-columns', pathway_group_data, [7]). +fb_tsv_pred_stats('duplicated-rows', pathway_group_data, [0]). +fb_tsv_pred_stats('total-rows', pathway_group_data, [992]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [1, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [2, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [3, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [4, 18, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [5, 18, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [6, 658, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [7, 658, object]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [4, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [4, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [5, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [5, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [6, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [6, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [7, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [7, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [1, [#, [#, 'FBgg0001196', 38], [#, 'FBgg0001069', 42], [#, 'FBgg0000891', 42], [#, 'FBgg0000981', 43], [#, 'FBgg0000916', 44], [#, 'FBgg0000892', 45], [#, 'FBgg0000980', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [1, [#, [#, 'FBgg0000941', 1], [#, 'FBgg0001093', 1], [#, 'FBgg0000917', 1], [#, 'FBgg0000910', 1], [#, 'FBgg0000975', 1], [#, 'FBgg0000958', 1], [#, 'FBgg0000889', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [2, [#, [#, 'IMD-N', 38], [#, 'NTCH-P', 42], [#, 'WNT-TCFN', 42], [#, 'HH-SMOP', 43], [#, 'SWH-N', 44], [#, 'WNT-TCFP', 45], [#, 'HH-SMON', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [2, [#, [#, 'SEVL', 1], [#, 'ACT-SMAD2', 1], [#, 'SWH', 1], [#, 'INS', 1], [#, 'PVR-P', 1], [#, 'EGFR-RTK', 1], [#, 'WNT-TCF', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [3, [#, [#, 'Negative Regulators of Imd Signaling Pathway', 38], [#, 'Positive Regulators of Notch Signaling Pathway', 42], [#, 'Negative Regulators of Wnt-TCF Signaling Pathway', 42], [#, 'Positive Regulators of Hedgehog Signaling Pathway', 43], [#, 'Negative Regulators of Hippo Signaling Pathway', 44], [#, 'Positive Regulators of Wnt-TCF Signaling Pathway', 45], [#, 'Negative Regulators of Hedgehog Signaling Pathway', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [3, [#, [#, 'Sevenless Signaling Pathway', 1], [#, 'Activin Signaling Pathway', 1], [#, 'Hippo Signaling Pathway', 1], [#, 'Insulin-like Receptor Signaling Pathway', 1], [#, 'Positive Regulators of Pvr Signaling Pathway', 1], [#, 'EGFR Signaling Pathway', 1], [#, 'Wnt-TCF Signaling Pathway', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [4, [#, [#, 'FBgg0000910', 77], [#, 'FBgg0001059', 79], [#, 'FBgg0000958', 83], [#, 'FBgg0000917', 87], [#, 'FBgg0001068', 89], [#, 'FBgg0000889', 100], [#, 'FBgg0000978', 108]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [4, [#, [#, 'FBgg0001792', 6], [#, 'FBgg0001093', 14], [#, 'FBgg0001560', 23], [#, 'FBgg0000941', 30], [#, 'FBgg0000934', 31], [#, 'FBgg0000967', 35]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [5, [#, [#, 'INS', 77], [#, 'TL-CAN', 79], [#, 'EGFR-RTK', 83], [#, 'SWH', 87], [#, 'NTCH', 89], [#, 'WNT-TCF', 100], [#, 'HH-SMO', 108]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [5, [#, [#, 'CGAS-STING', 6], [#, 'ACT-SMAD2', 14], [#, 'TNF', 23], [#, 'SEVL', 30], [#, 'TORS', 31], [#, 'FGFR', 35]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [6, [#, [#, 'FBgn0010269', 6], [#, 'FBgn0004177', 6], [#, 'FBgn0262432', 6], [#, 'FBgn0283468', 6], [#, 'FBgn0003256', 6], [#, 'FBgn0004638', 6]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [6, [#, [#, 'FBgn0262408', 1], [#, 'FBgn0027539', 1], [#, 'FBgn0001987', 1], [#, 'FBgn0005632', 1], [#, 'FBgn0043364', 1], [#, 'FBgn0000395', 1], [#, 'FBgn0261952', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [7, [#, [#, 'Dsor1', 6], [#, mts, 6], [#, 'mir-8', 6], [#, slmb, 6], [#, rl, 6], [#, drk, 6]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [7, [#, [#, 'mir-5', 1], [#, lili, 1], [#, 'Gli', 1], [#, faf, 1], [#, cbt, 1], [#, 'cv-2', 1], [#, srw, 1]]]). +fb_tsv_pred_stats('num-columns', physical_interactions_mitab, [42]). +fb_tsv_pred_stats('duplicated-rows', physical_interactions_mitab, [0]). +fb_tsv_pred_stats('total-rows', physical_interactions_mitab, [51247]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [1, 4623, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [2, 5257, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [3, 4611, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [4, 5242, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [5, 4623, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [6, 5257, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [7, 111, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [8, 4823, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [9, 4941, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [10, 5, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [11, 4, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [12, 3, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [13, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [14, 51247, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [15, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [16, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [17, 7, object]). 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object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [30, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [31, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [32, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [33, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [34, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [35, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [36, 3, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [37, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [38, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [39, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [40, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [41, 2, 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physical_interactions_mitab, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [12, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [13, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [14, 0, [], []]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [15, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [15, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [16, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [16, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [17, -, 50635]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [17, 50635, [#, -], [#, 50635]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [18, -, 50634]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [18, 50634, [#, -], [#, 50634]]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [19, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [20, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [21, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [22, 0, [], []]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [23, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [23, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [24, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [24, 51247, [#, -], [#, 51247]]). 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1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [34, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [35, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [36, '', 1]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [36, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [37, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [38, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [39, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [40, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, -, 51246]). 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'FBgn0037555', 168], [#, 'FBgn0263979', 175], [#, 'FBgn0262866', 178], [#, 'FBgn0262739', 185], [#, 'FBgn0266411', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [2, [#, [#, 'FBgn0036437', 1], [#, 'FBgn0066365', 1], [#, 'FBgn0040773', 1], [#, 'FBgn0019929', 1], [#, 'FBgn0033192', 1], [#, 'FBgn0000147', 1], [#, 'FBgn0052450', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [3, [#, [#, 'entrez gene/locuslink:318847', 188], [#, 'CG5942|entrez gene/locuslink:39744', 204], [#, 'CG7199|entrez gene/locuslink:40378', 209], [#, 'CG10388|entrez gene/locuslink:42034', 220], [#, 'CG10325|entrez gene/locuslink:42037', 237], [#, 'CG6384|entrez gene/locuslink:41848', 259], [#, 'CG8409|entrez gene/locuslink:34119', 275]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [3, [#, [#, 'CG6541|entrez gene/locuslink:34578', 1], [#, 'CG8611|entrez gene/locuslink:32725', 1], [#, 'CG11490|entrez gene/locuslink:33184', 1], [#, 'CG42341|entrez gene/locuslink:40305', 1], [#, 'CG32213|entrez gene/locuslink:317918', 1], [#, 'CG1976|entrez gene/locuslink:43758', 1], [#, 'CG2943|entrez gene/locuslink:40933', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [4, [#, [#, 'CG4494|entrez gene/locuslink:33981', 155], [#, 'CG4005|entrez gene/locuslink:37851', 159], [#, 'CG9638|entrez gene/locuslink:40966', 168], [#, 'CG4236|entrez gene/locuslink:41836', 175], [#, 'CG17596|entrez gene/locuslink:33139', 178], [#, 'CG6671|entrez gene/locuslink:36544', 185], [#, 'CG45051|entrez gene/locuslink:43580', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [4, [#, [#, 'CG5048|entrez gene/locuslink:39598', 1], [#, 'CG4705|entrez gene/locuslink:34540', 1], [#, 'CG11659|entrez gene/locuslink:42352', 1], [#, 'CR43012|entrez gene/locuslink:12798490', 1], [#, 'CG44086|entrez gene/locuslink:34032', 1], [#, 'entrez gene/locuslink:3772715', 1], [#, 'CG12090|entrez gene/locuslink:38176', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [5, [#, [#, 'His3(gene name)', 188], [#, 'brm(gene name)', 204], [#, 'Hr78(gene name)', 209], [#, 'Ubx(gene name)', 220], [#, 'abd-A(gene name)', 237], [#, 'Cp190(gene name)', 259], [#, 'flybase:\\Su(var)205\\(gene name)', 275]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [5, [#, [#, 'Mst33A(gene name)', 1], [#, 'sad(gene name)', 1], [#, 'NetA(gene name)', 1], [#, 'CG5131(gene name)', 1], [#, 'OSCP1(gene name)', 1], [#, 'CG9014(gene name)', 1], [#, 'SIFaR(gene name)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [6, [#, [#, 'Sumo(gene name)', 155], [#, 'yki(gene name)', 159], [#, 'Ada2b(gene name)', 168], [#, 'Caf1-55(gene name)', 175], [#, 'S6kII(gene name)', 178], [#, 'AGO1(gene name)', 185], [#, 'sima(gene name)', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [6, [#, [#, 'Dnaaf6(gene name)', 1], [#, 'dyl(gene name)', 1], [#, 'COX7C(gene name)', 1], [#, 'Ser7(gene name)', 1], [#, 'Corin(gene name)', 1], [#, 'aurA(gene name)', 1], [#, 'CG32450(gene name)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0397\\(two hybrid array)', 2067], [#, 'psi-mi:\\MI:0027\\(cosedimentation)', 4090], [#, 'psi-mi:\\MI:0096\\(pull down)', 4202], [#, 'psi-mi:\\MI:0006\\(anti bait coimmunoprecipitation)', 5251], [#, 'psi-mi:\\MI:0018\\(two hybrid)', 5958], [#, 'psi-mi:\\MI:0046\\(experimental knowledge based)', 10942], [#, 'psi-mi:\\MI:0007\\(anti tag coimmunoprecipitation)', 12395]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0042\\(electron paramagnetic resonance)', 1], [#, 'psi-mi:\\MI:0928\\(filter trap assay)', 1], [#, 'psi-mi:\\MI:1183\\(nuclease footprinting)', 1], [#, 'psi-mi:\\MI:1238\\(mass spectrometry studies of subunit exchange)', 1], [#, 'psi-mi:\\MI:0370\\(tox-r dimerization assay)', 1], [#, 'psi-mi:\\MI:0048\\(filamentous phage display)', 1], [#, 'psi-mi:\\MI:0605\\(enzymatic footprinting)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [8, [#, [#, 'Friedman A.A. (2011)', 400], [#, 'Rhee D.Y. (2014)', 618], [#, 'Vinayagam A. (2016)', 1808], [#, 'Shokri L. (2019)', 2109], [#, 'Hu Y. (2017.6.13)', 3634], [#, 'Anger A.M. (2013)', 3828], [#, 'Guruharsha K.G. (2011)', 10947]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [8, [#, [#, 'Geng J. (2023)', 1], [#, 'Mellone B.G. (2011)', 1], [#, 'Lim Y.M. (2013)', 1], [#, 'Tran T.A. (2013)', 1], [#, 'Ooe N. (2007)', 1], [#, 'Jiang L. (2007)', 1], [#, 'Nagai H. (2021)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0224702|pubmed:22028469', 386], [#, 'FBrf0227292|pubmed:25242320', 618], [#, 'FBrf0233454|pubmed:27626673', 1808], [#, 'FBrf0241977|pubmed:30995488', 2109], [#, 'FBrf0235788', 3634], [#, 'FBrf0221476|pubmed:23636399', 3828], [#, 'FBrf0218395|pubmed:22036573', 10947]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0057159|pubmed:1372522', 1], [#, 'FBrf0208241|pubmed:19348939', 1], [#, 'FBrf0204148|pubmed:17900877', 1], [#, 'FBrf0192396|pubmed:17224403', 1], [#, 'FBrf0192282|pubmed:17166919', 1], [#, 'FBrf0130030|pubmed:10801879', 1], [#, 'FBrf0134475|pubmed:11267682', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [15, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [15, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [16, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [16, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0919\\(acceptor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291], [#, 'psi-mi:\\MI:0498\\(prey)', 15993], [#, 'psi-mi:\\MI:0496\\(bait)', 16786]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 11], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290], [#, 'psi-mi:\\MI:0498\\(prey)', 15747], [#, 'psi-mi:\\MI:0496\\(bait)', 17033]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 15], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [23, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [23, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [24, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [24, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000071265', 36], [#, 'FBig0000095560', 38], [#, 'FBig0000097702', 38], [#, 'FBig0000095735', 38], [#, 'FBig0000086228', 40], [#, 'FBig0000067005', 44], [#, 'FBig0000017021', 46]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000000059', 1], [#, 'FBig0000108279', 1], [#, 'FBig0000108278', 1], [#, 'FBig0000108277', 1], [#, 'FBig0000108275', 1], [#, 'FBig0000108274', 1], [#, 'FBig0000108273', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\HA tag\\', 1318], [#, 'comment:\\GFP tag\\', 1380], [#, 'comment:\\GST tag\\', 1618], [#, 'comment:\\FLAG tag\\', 1993], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3270], [#, 'comment:\\fused to GAL4 activation domain\\', 3379]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\45 unique peptides identified\\', 1], [#, 'comment:\\mRFP tag\\', 1], [#, 'comment:\\MBP tag, [3]H label\\', 1], [#, 'comment:\\AU5 tag\\', 1], [#, 'comment:\\fused to biotin\\', 1], [#, 'comment:\\isoform RA/D specific\\|comment:\\biotin label\\', 1], [#, 'comment:\\FLAG\\|comment:\\myc\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\TAP tag\\', 1285], [#, 'comment:\\HA tag\\', 1378], [#, 'comment:\\GST tag\\', 1497], [#, 'comment:\\FLAG tag\\', 2115], [#, 'comment:\\fused to GAL4 activation domain\\', 3309], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3313]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\XL isoform specific\\', 1], [#, 'comment:\\His,SUMO tag\\', 1], [#, 'comment:\\SAINT score = 0.9673\\', 1], [#, 'comment:\\fused to &bgr;-gal\\', 1], [#, 'comment:\\Myc tag\\|comment:\\RFP tag\\', 1], [#, 'comment:\\38, 33 peptide counts\\', 1], [#, 'comment:\\99 peptide counts\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.\\', 984], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.\\', 1083], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.\\', 1723], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pooled)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pairwise.)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 2713], [#, 'comment:\\Source was embryos of wild-type fly line; proteins produced from endogenous genes.\\|comment:\\The structure of the Drosophila 80S ribosome with accessory proteins solved by cryo-EM. Complex captured as 3828 pairwise interactions which do not necessarily reflect direct contact.\\', 3403]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\HGScore = 131.41663\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.\\|comment:\\@BicD@ binds to GTP-bound @Rab6@, not GDP-bound @Rab6@.\\|comment:\\Purified recombinant proteins were tested for interaction.\\|comment:\\There is overlap of @egl@ and @Rab6@ binding sites in @BicD@.\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from S2 cell extract (endogenous gene).\\|comment:\\Constitutively active (GTP-locked) form of Rab was used for pull down. Parallel pull downs performed for several Rabs proteins in this study. Yield was measured using spectral counts. A specificity score (S score) was calculated, where greater weight was given to interactions seen with fewer baits.\\|comment:\\Specificity S-score=11.86.\\', 1], [#, 'comment:\\HGScore = 81.66328\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in HEK293F cells; prey produced as a recombinant fusion protein in S2 cells.\\|comment:\\Kd = 4.66uM\\', 1], [#, 'comment:\\Source was intact S2 cells; proteins produced from transfected constructs.\\|comment:\\Unlabeled S2 cells expressing @Nrg@ were mixed with dye labeled S2 cells expressing @ed@, and the formation of cell clusters containing both @Nrg@ and @ed@ expressing cells was assayed by immunofluorescence.\\', 1], [#, 'comment:\\HGScore = 61.53800\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [29, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [29, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [30, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [30, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [31, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [31, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [32, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [32, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [33, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [33, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [34, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [34, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [35, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [35, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [37, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [37, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [38, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [38, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [39, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [39, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [40, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [40, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [41, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [41, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [42, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [42, []]). +fb_tsv_pred_stats('num-columns', 'scRNA-Seq_gene_expression', [15]). +fb_tsv_pred_stats('duplicated-rows', 'scRNA-Seq_gene_expression', [0]). +fb_tsv_pred_stats('total-rows', 'scRNA-Seq_gene_expression', [14319160]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [1, 13, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [2, 13, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [3, 89, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [4, 89, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [5, 4, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [6, 2, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [7, 29, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [8, 1690, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [9, 1690, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [10, 271, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [11, 271, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [12, 14295, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [13, 14295, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [14, 8174166, float64]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [15, 370225, float64]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'scRNA-Seq_gene_expression', [5, '', 5898802]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [5, 5898802, [#, ''], [#, 5898802]]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [12, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [13, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [14, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [15, 0, [], []]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0244302', 177088], [#, 'FBrf0245499', 181659], [#, 'FBrf0246655', 191489], [#, 'FBrf0247762', 424264], [#, 'FBrf0251482', 602328], [#, 'FBrf0249767', 664303], [#, 'FBrf0252876', 11562417]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0248210', 24480], [#, 'FBrf0245988', 38144], [#, 'FBrf0245616', 100103], [#, 'FBrf0248439', 114659], [#, 'FBrf0247435', 116094], [#, 'FBrf0247148', 122132], [#, 'FBrf0244302', 177088]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088], [#, 'Allen et al., 2020, eLife 9: e54074', 181659], [#, 'Cho et al., 2020, Nat. Commun. 11(1): 4483', 191489], [#, '\\00d6zel et al., 2021, Nature 589(7840): 88--95', 424264], [#, 'Baker et al., 2021, Genome Res. 31(10): 1927--1937', 602328], [#, 'Mokashi et al., 2021, Front. Psychiatry 12: 699033', 664303], [#, 'Li et al., 2022, Science 375(6584): eabk2432', 11562417]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Shi et al., 2021, Curr. Biol. 31(4): 840--852.e5', 24480], [#, 'Cattenoz et al., 2020, EMBO J. 39(12): e104486', 38144], [#, 'Jevitt et al., 2020, PLoS Biol. 18(4): e3000538', 100103], [#, 'Tauc et al., 2021, eLife 10: e62250', 114659], [#, 'Zappia et al., 2020, EMBO Rep. 21(10): e49555', 116094], [#, 'Rust et al., 2020, Nat. Commun. 11(1): 5628', 122132], [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0005662', 424264], [#, 'FBlc0004310', 462839], [#, 'FBlc0003849', 485904], [#, 'FBlc0004788', 587089], [#, 'FBlc0004142', 1324076], [#, 'FBlc0004624', 1374828], [#, 'FBlc0005151', 1787268]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0004140', 11271], [#, 'FBlc0004136', 11650], [#, 'FBlc0004622', 12336], [#, 'FBlc0004618', 12504], [#, 'FBlc0005149', 13127], [#, 'FBlc0005145', 13237], [#, 'FBlc0003731', 16857]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2021_Ozel_ADM1_seq_clustering, 424264], [#, scRNAseq_2022_FCA_MALE_HEAD_seq_clustering, 462839], [#, scRNAseq_2022_FCA_FEMALE_HEAD_seq_clustering, 485904], [#, scRNAseq_2022_FCA_MIXED_HEAD_seq_clustering, 587089], [#, scRNAseq_2022_FCA_FEMALE_FULL_seq_clustering, 1324076], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering, 1374828], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering, 1787268]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2022_FCA_FEMALE_IPC_seq_clustering, 11271], [#, scRNAseq_2022_FCA_FEMALE_CC_seq_clustering, 11650], [#, scRNAseq_2022_FCA_MALE_IPC_seq_clustering, 12336], [#, scRNAseq_2022_FCA_MALE_CC_seq_clustering, 12504], [#, scRNAseq_2022_FCA_MIXED_IPC_seq_clustering, 13127], [#, scRNAseq_2022_FCA_MIXED_CC_seq_clustering, 13237], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering, 16857]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, antenna, 537963], [#, ovary, 556379], [#, 'adult brain', 602328], [#, brain, 664303], [#, adult, 1157530], [#, 'adult head', 1535832], [#, mixed, 4486172]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, 'adult pars intercerebralis', 36734], [#, 'adult corpus cardiacum', 37391], [#, 'embryonic/larval hemolymph', 101153], [#, 'adult midgut', 114659], [#, 'wing disc', 116094], [#, 'adult abdomen', 120557], [#, 'primary lobe of embryonic/larval lymph gland', 128480]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0004677', 13868], [#, 'FBlc0005192', 13876], [#, 'FBlc0004567', 13941], [#, 'FBlc0005094', 13941], [#, 'FBlc0004713', 13953], [#, 'FBlc0005247', 13956], [#, 'FBlc0005205', 13958]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0003842', 762], [#, 'FBlc0003779', 765], [#, 'FBlc0003749', 872], [#, 'FBlc0003748', 1065], [#, 'FBlc0003833', 1100], [#, 'FBlc0003843', 2232], [#, 'FBlc0003733', 2255]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_fat_cells, 13868], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_neurons, 13876], [#, scRNAseq_2022_FCA_MALE_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MIXED_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_spermatocytes, 13953], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_spermatocytes, 13956], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_fat_cells, 13958]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_imaginal_tracheoblasts, 762], [#, scRNAseq_2020_Cho_NI96HL_seq_clustering_lamellocytes, 765], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_lamellocytes, 872], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_adipohemocytes, 1065], [#, scRNAseq_2020_Zappia_mCherryRNAi_seq_clustering_imaginal_tracheoblasts, 1100], [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_SOP_cells, 2232], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering_lamellocytes, 2255]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003185', 202803], [#, 'FBbt00005040', 281977], [#, 'FBbt00047095', 365976], [#, 'FBbt00058143', 371275], [#, 'FBbt00058238', 373508], [#, 'FBbt00049949', 395912], [#, 'FBbt00058230', 396390]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003844', 3363], [#, 'FBbt00004868', 4017], [#, 'FBbt00003874', 4103], [#, 'FBbt00111746', 4323], [#, 'FBbt00004873', 4476], [#, 'FBbt00004905', 4559], [#, 'FBbt00003876', 4893]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'adult oenocyte', 202803], [#, 'adult tracheocyte', 281977], [#, 'adult neuron', 365976], [#, 'adult hemocyte', 371275], [#, 'adult epithelial cell', 373508], [#, 'adult fat cell', 395912], [#, 'adult muscle cell', 396390]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'medullary tangential neuron Mt8', 3363], [#, 'germarium cap cell', 4017], [#, 'lobula columnar neuron LC4', 4103], [#, 'lobula columnar neuron LC10c', 4323], [#, 'female germline stem cell', 4476], [#, 'border follicle cell', 4559], [#, 'lobula columnar neuron LC6', 4893]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0267521', 1690], [#, 'FBgn0086472', 1690], [#, 'FBgn0002626', 1690], [#, 'FBgn0285947', 1690], [#, 'FBgn0003279', 1690], [#, 'FBgn0017579', 1690], [#, 'FBgn0016726', 1690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0284232', 2], [#, 'FBgn0267889', 4], [#, 'FBgn0045478', 4], [#, 'FBgn0039374', 4], [#, 'FBgn0028537', 4], [#, 'FBgn0267886', 4], [#, 'FBgn0085252', 4]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, '18SrRNA-Psi:CR45861', 1690], [#, 'RpS25', 1690], [#, 'RpL32', 1690], [#, 'RpS10b', 1690], [#, 'RpL4', 1690], [#, 'RpL14', 1690], [#, 'RpL29', 1690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, 'CG46316', 2], [#, 'CR46177', 4], [#, 'Gr64b', 4], [#, 'CG17770', 4], [#, 'CG31775', 4], [#, 'CR46174', 4], [#, 'CG34223', 4]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 1272.2646, 2315], [#, 1218.0267, 2325], [#, 1287.0013, 2439], [#, 1298.7013, 2444], [#, 1095.2902, 2445], [#, 24.43136, 2546], [#, 1191.8951, 2690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 269.05170000000004, 1], [#, 480.440107, 1], [#, 990.35309, 1], [#, 370.235704, 1], [#, 272.274411, 1], [#, 234.056368, 1], [#, 320.438443, 1]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.076923, 41235], [#, 0.0625, 43249], [#, 0.1, 44120], [#, 0.025, 44512], [#, 0.04, 47158], [#, 0.083333, 47452], [#, 0.05, 59787]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.366282, 1], [#, 0.774026, 1], [#, 0.318802, 1], [#, 0.173431, 1], [#, 0.334605, 1], [#, 0.770109, 1], [#, 0.517905, 1]]]). +fb_tsv_pred_stats('num-columns', sed5C, [11]). +fb_tsv_pred_stats('duplicated-rows', sed5C, [0]). +fb_tsv_pred_stats('total-rows', sed5C, [120]). +fb_tsv_pred_stats('unique-values', sed5C, [1, 10, object]). +fb_tsv_pred_stats('unique-values', sed5C, [2, 10, object]). +fb_tsv_pred_stats('unique-values', sed5C, [3, 5, object]). +fb_tsv_pred_stats('unique-values', sed5C, [4, 6, object]). +fb_tsv_pred_stats('unique-values', sed5C, [5, 3, object]). +fb_tsv_pred_stats('unique-values', sed5C, [6, 2, object]). +fb_tsv_pred_stats('unique-values', sed5C, [7, 119, object]). +fb_tsv_pred_stats('unique-values', sed5C, [8, 119, object]). +fb_tsv_pred_stats('unique-values', sed5C, [9, 79, object]). +fb_tsv_pred_stats('unique-values', sed5C, [10, 2, object]). +fb_tsv_pred_stats('unique-values', sed5C, [11, 2, object]). +fb_tsv_pred_stats('missing-values', sed5C, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', sed5C, [5, '', 114]). +fb_tsv_pred_stats('missing-values', sed5C, [5, 114, [#, ''], [#, 114]]). +fb_tsv_pred_stats('null-value-count', sed5C, [6, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [6, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('missing-values', sed5C, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [8, 0, [], []]). +fb_tsv_pred_stats('null-value-count', sed5C, [9, '', 41]). +fb_tsv_pred_stats('missing-values', sed5C, [9, 41, [#, ''], [#, 41]]). +fb_tsv_pred_stats('null-value-count', sed5C, [10, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [10, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('null-value-count', sed5C, [11, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [11, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('most-frequent', sed5C, [1, [#, [#, 'FBgg0000062', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6], [#, 'FBgg0000100', 7], [#, 'FBgg0000118', 14], [#, 'FBgg0000128', 75]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [1, [#, [#, 'FBgg0000117', 1], [#, 'FBgg0000104', 2], [#, 'FBgg0000062', 3], [#, 'FBgg0000114', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [2, [#, [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6], [#, 'CASPASES', 7], [#, 'HECT UBIQUITIN LIGASES', 14], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 75]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [2, [#, [#, 'JOSEPHIN DEUBIQUITINASES', 1], [#, 'GOLIATH UBIQUITIN LIGASES', 2], [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'N-ETHYLMALEIMIDE-SENSITIVE FACTORS', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [4, [#, [#, ubiquit, 1], [#, 'cysteine-type deubiquitinase activity', 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [4, [#, [#, 'cysteine-type deubiquitinase activity', 1], [#, ubiquit, 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [7, [#, [#, 'FBgn0034546', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035233', 1], [#, 'FBgn0032635', 1], [#, 'FBgn0025186', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0034546', 1], [#, 'FBgn0034314', 1], [#, 'FBgn0034312', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [8, [#, [#, 'CG13442', 1], [#, 'Sou', 1], [#, 'CG11414', 1], [#, 'CG12099', 1], [#, 'Pex10', 1], [#, 'CG15141', 1], [#, 'ari-2', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [8, [#, [#, 'ari-2', 1], [#, 'CG12099', 1], [#, 'CG11414', 1], [#, 'Sou', 1], [#, 'CG13442', 1], [#, nopo, 1], [#, 'CG10916', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [9, [#, [#, 'Ubr1 ubiquitin ligase', 1], [#, 'Peroxin 12', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Non-SMC element 1', 1], [#, 'Protein interacting with Ttk69 and Sin3A', 1], [#, 'ariadne 2', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [9, [#, [#, 'ariadne 2', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Peroxin 12', 1], [#, 'Ubr1 ubiquitin ligase', 1], [#, 'suppression of retinal degeneration disease 1 upon overexpression 1', 1], [#, highwire, 1], [#, 'Mahogunin ring finger 1', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('num-columns', sednJ, [2]). +fb_tsv_pred_stats('duplicated-rows', sednJ, [0]). +fb_tsv_pred_stats('total-rows', sednJ, [76447]). +fb_tsv_pred_stats('unique-values', sednJ, [1, 76447, object]). +fb_tsv_pred_stats('unique-values', sednJ, [2, 76447, object]). +fb_tsv_pred_stats('missing-values', sednJ, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', sednJ, [2, 0, [], []]). +fb_tsv_pred_stats('num-columns', gene_associatio, [2]). +fb_tsv_pred_stats('duplicated-rows', gene_associatio, [69]). +fb_tsv_pred_stats('total-rows', gene_associatio, [48039]). +fb_tsv_pred_stats('unique-values', gene_associatio, [1, 47970, object]). +fb_tsv_pred_stats('unique-values', gene_associatio, [2, 4664, object]). +fb_tsv_pred_stats('missing-values', gene_associatio, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_associatio, [2, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_associatio, [1, [#, [#, 'FB\\FBgn0053817\\His2A:CG33817\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053817\\His2A:CG33817\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\enables\\GO:0003677\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\F\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053846\\His1:CG33846\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33846\\CG33846\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053843\\His1:CG33843\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33843\\CG33843\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2]]]). +fb_tsv_pred_stats('less-frequent', gene_associatio, [1, [#, [#, '!generated-by:', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:1904355\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0070198\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\enables\\GO:0003950\\FB:FBrf0241717|PMID:30593492\\IMP\\\\F\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0090263\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0032436\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0046330\\FB:FBrf0254888|PMID:36222503\\IDA\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20230307\\FlyBase\\\\', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_associatio, [2, [#, [#, 'sex|dsxF|dsxM|intersex-62c|ix-62c\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 19], [#, 'lipase\\protein\\taxon:7227\\20230703\\InterPro\\\\', 19], [#, 'factor|A7.1|ABF|Abf|CG3992|DmGATAb|GATA|GATAb|SERPENT|SRP|Serpent|Srp|abf|dGATAb|l(3)01549|l(3)89B2|l(3)neo45|serpentD|spt|srpD\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 21], [#, 'protein\\protein\\taxon:7227\\20151015\\FlyBase\\\\', 21], [#, 'sterile(2)ltoRJ36|fs(2)ltoRJ36|no-relish\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 23], [#, '1|Rhomboid-1|Rhomboid-I|Ve|Veinlet|iks|rho-1|rho1|rhom|rhomboid-1|rhomboid/veinlet|rhomboid1|ve|veinlet\\protein\\taxon:7227\\20200406\\FlyBase\\\\', 26], [#, '1.12|co|dNotch|fa|facet|l(1)3Cb|l(1)Ax|l(1)N|n[fah]|nd|notch|notchoid|shd|spl|split|strawberry|swb\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 44]]]). +fb_tsv_pred_stats('less-frequent', gene_associatio, [2, [#, [#, 'FlyBase', 1], [#, 'B2-3|Sox21|SoxB2.3|sox21a\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200725\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200311\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20190311\\FlyBase\\\\', 1]]]). +fb_tsv_pred_stats('num-columns', disease_model_annotations, [12]). +fb_tsv_pred_stats('duplicated-rows', disease_model_annotations, [0]). +fb_tsv_pred_stats('total-rows', disease_model_annotations, [26750]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [1, 5165, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [2, 5165, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [3, 317, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [4, 6, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [5, 3554, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [6, 3554, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [7, 8303, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [8, 8303, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [9, 2657, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [10, 2657, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [11, 6770, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [12, 2675, object]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [3, '', 21466]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [3, 21466, [#, ''], [#, 21466]]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [6, 0, [], []]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [7, '', 6240]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [7, 6240, [#, ''], [#, 6240]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [8, '', 6240]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [8, 6240, [#, ''], [#, 6240]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [9, '', 20510]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [9, 20510, [#, ''], [#, 20510]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [10, '', 20510]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [10, 20510, [#, ''], [#, 20510]]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [12, 0, [], []]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0026420', 300], [#, 'FBgn0029891', 301], [#, 'FBgn0261084', 371], [#, 'FBgn0024961', 448], [#, 'FBgn0025823', 630], [#, 'FBgn0025587', 680], [#, 'FBgn0015394', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0033093', 1], [#, 'FBgn0031951', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0031973', 1], [#, 'FBgn0266724', 1], [#, 'FBgn0050273', 1], [#, 'FBgn0031981', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [2, [#, [#, 'Hsap\\SNCA', 300], [#, 'Pink1', 301], [#, 'Hsap\\TARDBP', 371], [#, 'Hsap\\ATXN3', 448], [#, 'Hsap\\APP', 630], [#, 'Hsap\\HTT', 680], [#, 'Hsap\\MAPT', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [2, [#, [#, 'CG3270', 1], [#, r2d2, 1], [#, 'Sirup', 1], [#, 'Spn28Dc', 1], [#, 'Trs20', 1], [#, 'CG30273', 1], [#, 'Megf8', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:11138', 300], [#, 'HGNC:11571', 371], [#, 'HGNC:7106', 448], [#, 'HGNC:620', 630], [#, 'HGNC:4851', 680], [#, 'HGNC:6893', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:6239', 1], [#, 'HGNC:16854', 1], [#, 'HGNC:11118', 1], [#, 'HGNC:12013', 1], [#, 'HGNC:18222', 1], [#, 'HGNC:14973', 1], [#, 'HGNC:19245', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [5, [#, [#, 'DOID:10652', 652], [#, 'DOID:0060213', 692], [#, 'DOID:14330', 992], [#, 'DOID:1289', 1045], [#, 'DOID:12858', 1091], [#, 'DOID:162', 1305], [#, 'DOID:680', 1474]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [5, [#, [#, 'DOID:0111040', 1], [#, 'DOID:0080232', 1], [#, 'DOID:0110441', 1], [#, 'DOID:0111706', 1], [#, 'DOID:0080698', 1], [#, 'DOID:0080465', 1], [#, 'DOID:0060730', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [6, [#, [#, 'Alzheimer\'s disease', 652], [#, 'frontotemporal dementia and/or amyotrophic lateral sclerosis-1', 692], [#, 'Parkinson\'s disease', 992], [#, 'neurodegenerative disease', 1045], [#, 'Huntington\'s disease', 1091], [#, cancer, 1305], [#, tauopathy, 1474]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [6, [#, [#, 'glycogen storage disease IXd', 1], [#, 'autosomal dominant intellectual developmental disorder 51', 1], [#, 'dilated cardiomyopathy 2B', 1], [#, 'oblique facial clefting 1', 1], [#, 'Teebi hypertelorism syndrome 1', 1], [#, 'developmental and epileptic encephalopathy 30', 1], [#, 'torsion dystonia 1', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [7, [#, [#, 'FBal0060587', 153], [#, 'FBal0127292', 173], [#, 'FBal0193144', 193], [#, 'FBal0126526', 233], [#, 'FBal0126527', 239], [#, 'FBal0090630', 296]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [7, [#, [#, 'FBal0341584', 1], [#, 'FBal0265787', 1], [#, 'FBal0324663', 1], [#, 'FBal0262510', 1], [#, 'FBal0257944', 1], [#, 'FBal0235732', 1], [#, 'FBal0206026', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [8, [#, [#, 'Ras85D[V12.UAS]', 153], [#, 'Hsap\\HTT[Q93.ex1.UAS]', 173], [#, 'Pink1[B9]', 193], [#, 'Hsap\\MAPT[UAS.cWa]', 233], [#, 'Hsap\\MAPT[R406W.UAS]', 239], [#, 'Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]', 296]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [8, [#, [#, 'Tom7[HMC06597]', 1], [#, 'Lkb1[UAS.cWa]', 1], [#, 'Lkb1[VSH330167]', 1], [#, 'Lkb1[GL00019]', 1], [#, 'Lkb1[HMS01351]', 1], [#, 'Lkb1[KK108675]', 1], [#, 'Droj2[GD14050]', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:6677', 34], [#, 'HGNC:2638', 35], [#, 'HGNC:9475', 36], [#, 'HGNC:59', 44], [#, 'HGNC:10024', 45], [#, 'HGNC:12530', 48]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:26013', 1], [#, 'HGNC:7703', 1], [#, 'HGNC:24846', 1], [#, 'HGNC:5201', 1], [#, 'HGNC:8966', 1], [#, 'HGNC:12756', 1], [#, 'HGNC:12974', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [10, [#, [#, 'LPL', 34], [#, 'CYP3A5', 35], [#, 'PRSS1', 36], [#, 'ABCC8', 44], [#, 'RLBP1', 45], [#, 'UGT1A1', 48]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [10, [#, [#, 'DNAAF5', 1], [#, 'NDUFB8', 1], [#, 'GAS2L2', 1], [#, 'HS6ST1', 1], [#, 'PIGL', 1], [#, 'WDR4', 1], [#, 'RNF113A', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [11, [#, [#, 'modeled by FLYBASE:Hsap\\HTT[128Q.1-336.UAS]; FB:FBal0294194', 129], [#, 'modeled by FLYBASE:Hsap\\MAPT[UAS.cWa]; FB:FBal0126526', 181], [#, 'modeled by FLYBASE:Hsap\\MAPT[R406W.UAS]; FB:FBal0126527', 189], [#, 'modeled by FLYBASE:Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]; FB:FBal0090630', 241], [#, 'CEC', 361], [#, 'CEA', 4981], [#, 'IEA', 6240]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [11, [#, [#, 'is exacerbated by FLYBASE:Pka-C1[GD1276]; FB:FBal0208081', 1], [#, 'is ameliorated by FLYBASE:wg[l-12]; FB:FBal0018504', 1], [#, 'is ameliorated by FLYBASE:nej[Q7]; FB:FBal0094386', 1], [#, 'is ameliorated by FLYBASE:mam[8]; FB:FBal0012016', 1], [#, 'is ameliorated by FLYBASE:gro[1]; FB:FBal0005217', 1], [#, 'is ameliorated by FLYBASE:fz[EY13696]; FB:FBal0159195', 1], [#, 'is ameliorated by FLYBASE:fng[52]; FB:FBal0034614', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0228684', 158], [#, 'FBrf0241270', 174], [#, 'FBrf0248245', 176], [#, 'FBrf0244983', 239], [#, 'FBrf0227999', 245], [#, 'FBrf0218446', 303], [#, 'FBrf0241599', 6240]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0217529', 1], [#, 'FBrf0230073', 1], [#, 'FBrf0205420', 1], [#, 'FBrf0190823', 1], [#, 'FBrf0221444', 1], [#, 'FBrf0211611', 1], [#, 'FBrf0194165', 1]]]). +fb_tsv_pred_stats('num-columns', fu_gal4_table_, [2]). +fb_tsv_pred_stats('duplicated-rows', fu_gal4_table_, [25810]). +fb_tsv_pred_stats('total-rows', fu_gal4_table_, [43801]). +fb_tsv_pred_stats('unique-values', fu_gal4_table_, [1, 17987, object]). +fb_tsv_pred_stats('unique-values', fu_gal4_table_, [2, 343, object]). +fb_tsv_pred_stats('missing-values', fu_gal4_table_, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fu_gal4_table_, [2, '', 2614]). +fb_tsv_pred_stats('missing-values', fu_gal4_table_, [2, 2614, [#, ''], [#, 2614]]). +fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [1, [#, [#, ' \\driver\\: ', 319], [#, ' ', 319], [#, ' }', 319], [#, ' \\major_stages\\: ', 319], [#, ' \\transposons\\: ', 319], [#, ' \\major_tissues\\: ', 319], [#, ' },', 1580]]]). +fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\FBst0067166\\: \\67166\\,', 1], [#, ' \\FBst0067167\\: \\67167\\,', 1], [#, ' \\FBst0067168\\: \\67168\\,', 1], [#, ' \\FBst0067175\\: \\67175\\,', 1], [#, ' \\FBst0067177\\: \\67177\\,', 1], [#, ' \\FBst0067178\\: \\67178\\,', 1]]]). +fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}fruNP0021\\', 1], [#, 'Or47b-GAL4.7.467}\\', 1], [#, 'ato-GAL4.3.6}\\', 1], [#, 'GAL4}pnt14-94\\', 1], [#, 'en2.4-GAL4}\\', 3], [#, '},', 154]]]). +fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}C587\\', 1], [#, 'GawB}fruNP0021\\', 1], [#, 'GMR9D11-GAL4}\\', 1], [#, 'alrm-GAL4.D}\\', 1], [#, 'GAL4-lacZ-Ubx(-FRT).dC}@; see @Scer\\\\GAL4[Ubx.PdC]@ elsewhere in this table.\\,', 1], [#, 'GAL4-lacZ-Ubx(FRT.f+).dC}\\', 1], [#, 'GAL4-\\03b1Tub84B(-FRT).P}@; see @Scer\\\\GAL4[\\03b1Tub84B.PP]@ elsewhere in this table.\\', 1]]]). +fb_tsv_pred_stats('num-columns', insertion_mapping, [7]). +fb_tsv_pred_stats('duplicated-rows', insertion_mapping, [92]). +fb_tsv_pred_stats('total-rows', insertion_mapping, [212010]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [1, 211918, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [2, 211884, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [3, 64780, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [4, 3, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [5, 4, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [6, 7609, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [7, 3716, object]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [2, '', 127]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [2, 127, [#, ''], [#, 127]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [3, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [3, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [4, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [4, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [5, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [5, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [6, '', 129488]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [6, 129488, [#, ''], [#, 129488]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, '', 203698]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, ?, 70]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [7, 203768, [#, '', ?], [#, 203698, 70]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [1, [#, [#, 'P{Roc1b.+t1.17}', 4], [#, 'P{Mcp-wy', 4], [#, 'P{Fab7-w', 6], [#, 'P{SUPor-P.PRE', 9], [#, 'P{ush-lacZ.-2190.-1421}', 9], [#, 'P{Mcp-ff', 13], [#, 'P{Mcp-w', 44]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [1, [#, [#, 'P{UASp-GAP43.mEos}1', 1], [#, 'P{KK106851}VIE-260B', 1], [#, 'P{KK106853}VIE-260B', 1], [#, 'P{KK106855}VIE-260B', 1], [#, 'P{KK106857}VIE-260B', 1], [#, 'P{KK106859}VIE-260B', 1], [#, 'P{KK106861}VIE-260B', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [2, [#, [#, 'FBti0120120', 1], [#, 'FBti0120119', 1], [#, 'FBti0120118', 1], [#, 'FBti0120117', 1], [#, 'FBti0120126', 1], [#, 'FBti0129988', 1]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [2, [#, [#, 'FBti0129988', 1], [#, 'FBti0120115', 1], [#, 'FBti0120116', 1], [#, 'FBti0120117', 1], [#, 'FBti0120118', 1], [#, 'FBti0120119', 1], [#, 'FBti0120120', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [3, [#, [#, '3L:4692761..4692761', 19], [#, '3L:3250542..3250542', 20], [#, 'X:246305..246305', 21], [#, '3R:31883471..31883471', 21], [#, '2L:22237519..22237519', 37], [#, 'X:6861890..6861890', 53]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [3, [#, [#, '3R:5508394..5508394', 1], [#, '3R:9353290..9353290', 1], [#, '3R:8033496..8033496', 1], [#, '2L:17260772..17260772', 1], [#, '3L:540584..540584', 1], [#, '3L:8360935..8360935', 1], [#, '3L:11819914..11819914', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [7, [#, [#, 75, 'B', 30], [#, '12C1-12C2', 41], [#, '35D1-35D2', 44], [#, '21B4-21B6', 48], [#, '47A11-47A14', 55]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [7, [#, [#, '59B4-59B5', 1], [#, '79D1-79D4', 1], [#, '50C4-50C5', 1], [#, '60D5-60D6', 1], [#, '47E4-47E5', 1], [#, '47A1-47B14', 1], [#, '46B13--46E4', 1]]]). +fb_tsv_pred_stats('num-columns', 'cyto-genetic-seq', [4]). +fb_tsv_pred_stats('duplicated-rows', 'cyto-genetic-seq', [0]). +fb_tsv_pred_stats('total-rows', 'cyto-genetic-seq', [600]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [1, 600, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [2, 292, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [3, 593, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [4, 8, object]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [3, '', 8]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [3, 8, [#, ''], [#, 8]]). +fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [4, '', 577]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [4, 577, [#, ''], [#, 577]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[43]', 7], [#, '3-[47.5]', 7], [#, '3-[48]', 10], [#, '2-[55]', 13], [#, '3-[45]', 17], [#, '2-[54]', 24], [#, '3-[47]', 24]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[85]', 1], [#, '3-[84]', 1], [#, '3-[97]', 1], [#, '3-[96]', 1], [#, '3-[95]', 1], [#, '2-[69]', 1], [#, '2-[70]', 1]]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [3, [#, [#, '3L:10316396..10769950', 1], [#, '3L:9865311..10316395', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9333838..9547269', 1], [#, '3L:11174026..11254920', 1], [#, 'X:408583..660483', 1]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [3, [#, [#, 'X:408583..660483', 1], [#, '3L:8981731..9125749', 1], [#, '3L:9125750..9333837', 1], [#, '3L:9333838..9547269', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9865311..10316395', 1], [#, '3L:10316396..10769950', 1]]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 24 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, inversion, 6], [#, 'includes 1 area of non-identity', 6]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 24 area(s) of non-identity', 1], [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 6 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, 'includes 1 area of non-identity', 6], [#, inversion, 6]]]). +fb_tsv_pred_stats('num-columns', 'genome-cyto-seq', [3]). +fb_tsv_pred_stats('duplicated-rows', 'genome-cyto-seq', [0]). +fb_tsv_pred_stats('total-rows', 'genome-cyto-seq', [5033]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [1, 5033, object]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [2, 5033, int64]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [3, 5033, int64]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [3, 0, [], []]). +fb_tsv_pred_stats('num-columns', dataset_metadata, [4]). +fb_tsv_pred_stats('duplicated-rows', dataset_metadata, [0]). +fb_tsv_pred_stats('total-rows', dataset_metadata, [22220266]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [1, 3493, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [2, 3493, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [3, 1885456, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [4, 1885453, object]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', dataset_metadata, [4, unknown, 1]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [4, 1, [#, unknown], [#, 1]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [1, [#, [#, 'FBlc0000146', 67302], [#, 'FBlc0000142', 67302], [#, 'FBlc0000143', 67302], [#, 'FBlc0000137', 67302], [#, 'FBlc0000005', 161905], [#, 'FBlc0000049', 220083], [#, 'FBlc0000029', 241818]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [1, [#, [#, 'FBlc0002175', 1], [#, 'FBlc0001943', 1], [#, 'FBlc0002094', 1], [#, 'FBlc0002095', 1], [#, 'FBlc0002096', 1], [#, 'FBlc0002097', 1], [#, 'FBlc0002098', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [2, [#, [#, mE_mRNA_P15_junctions, 67302], [#, mE_mRNA_P5_junctions, 67302], [#, mE_mRNA_P6_junctions, 67302], [#, mE_mRNA_L3_12hr_junctions, 67302], [#, 'EK_EP_cDNA', 161905], [#, 'RP_cDNA', 220083], [#, 'Affymetrix_GeneChip_v2', 241818]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [2, [#, [#, 'ChIP-Seq_mE5125_HDAC1_E16', 1], [#, 'ChIP-chip_mE3893_Su(var)205_RNAi_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE2667_Su(var)205_CME-W1-Cl.8+', 1], [#, 'ChIP-chip_mE2666_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE4126_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE6074_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE3707_Su(var)205_S2-DRSC', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [3, [#, [#, 'FBgn0011217', 1890], [#, 'FBgn0015790', 1890], [#, 'FBgn0040372', 1891], [#, 'FBgn0002781', 1892], [#, 'FBgn0013263', 1896], [#, 'FBgn0020412', 1909], [#, 'FBgn0261617', 1911]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [3, [#, [#, '1616608_a_at_1350', 1], [#, 'FBsf0000240631', 1], [#, 'FBsf0000240630', 1], [#, 'FBsf0000240629', 1], [#, 'FBsf0000240628', 1], [#, 'FBsf0000240627', 1], [#, 'FBsf0000240626', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [4, [#, [#, 'Rab11', 1890], [#, eff, 1890], [#, 'G9a', 1891], [#, 'mod(mdg4)', 1892], [#, 'Trl', 1896], [#, 'JIL-1', 1909], [#, nej, 1911]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [4, [#, [#, '1616608_a_at_1350', 1], [#, 'TFBS_D_002907', 1], [#, 'TFBS_D_002906', 1], [#, 'TFBS_D_002905', 1], [#, 'TFBS_D_002904', 1], [#, 'TFBS_D_002903', 1], [#, 'TFBS_D_002902', 1]]]). +fb_tsv_pred_stats('num-columns', dmel_paralogs, [11]). +fb_tsv_pred_stats('duplicated-rows', dmel_paralogs, [0]). +fb_tsv_pred_stats('total-rows', dmel_paralogs, [223055]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [1, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [2, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [3, 12, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [4, 10693, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [5, 2, int64]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [6, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [7, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [8, 12, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [9, 10693, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [10, 2, int64]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [11, 13, int64]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [11, 0, [], []]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0040606', 1], [#, 'FBgn0030608', 1], [#, 'FBgn0263086', 1], [#, 'FBgn0263094', 1], [#, 'FBgn0030613', 1], [#, 'FBgn0037719', 1], [#, 'FBgn0013949', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [2, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [2, [#, [#, 'CG6503', 1], [#, 'Lsd-2', 1], [#, 'CG43354', 1], [#, 'CG43362', 1], [#, 'Rab3-GEF', 1], [#, bocks, 1], [#, 'Elal', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [3, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [3, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [4, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '21799330..21800904', 249], [#, '25071126..25072712', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [4, [#, [#, '7918517..7920131', 1], [#, '770363..770462', 1], [#, '11993989..11995432', 1], [#, '11997900..11999340', 1], [#, '22608670..22613656', 1], [#, '9839776..9841163', 1], [#, '5563977..5564815', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0004867', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0046247', 1], [#, 'FBgn0026702', 1], [#, 'FBgn0032699', 1], [#, 'FBgn0039454', 1], [#, 'FBgn0031077', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [7, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [7, [#, [#, 'RpS2', 1], [#, 'Sirup', 1], [#, 'CG5938', 1], [#, 'Pop1', 1], [#, 'CG10383', 1], [#, 'CG14247', 1], [#, 'THADA', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [8, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [8, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [9, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '25071126..25072712', 249], [#, '21799330..21800904', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [9, [#, [#, '9896265..9897552', 1], [#, '11126877..11129087', 1], [#, '2079919..2081286', 1], [#, '22080382..22083473', 1], [#, '17849727..17852453', 1], [#, '17830828..17841705', 1], [#, '5093976..5095910', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [11, [#, [#, 7, 4614], [#, 6, 6222], [#, 5, 8946], [#, 4, 14762], [#, 3, 27362], [#, 2, 39938], [#, 1, 105517]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [11, [#, [#, 13, 230], [#, 12, 1190], [#, 11, 2910], [#, 9, 3614], [#, 8, 3650], [#, 10, 4100], [#, 7, 4614]]]). +fb_tsv_pred_stats('num-columns', entity_publication, [4]). +fb_tsv_pred_stats('duplicated-rows', entity_publication, [344]). +fb_tsv_pred_stats('total-rows', entity_publication, [5580889]). +fb_tsv_pred_stats('unique-values', entity_publication, [1, 1952735, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [2, 1952521, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [3, 105916, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [4, 63490, object]). +fb_tsv_pred_stats('missing-values', entity_publication, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', entity_publication, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', entity_publication, [3, '', 644]). +fb_tsv_pred_stats('missing-values', entity_publication, [3, 644, [#, ''], [#, 644]]). +fb_tsv_pred_stats('null-value-count', entity_publication, [4, '', 3444472]). +fb_tsv_pred_stats('missing-values', entity_publication, [4, 3444472, [#, ''], [#, 3444472]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [1, [#, [#, 'FBgn0003996', 4465], [#, 'FBgn0014446', 4694], [#, 'FBto0000342', 4872], [#, 'FBgn0014447', 5750], [#, 'FBto0000180', 5793], [#, 'FBte0000037', 11131], [#, 'FBgn0014445', 17375]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [1, [#, [#, 'FBtr0334316', 1], [#, 'FBig0000117350', 1], [#, 'FBig0000117351', 1], [#, 'FBig0000117352', 1], [#, 'FBig0000117353', 1], [#, 'FBig0000117354', 1], [#, 'FBig0000117355', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [2, [#, [#, w, 4465], [#, 'Avic\\GFP', 4694], [#, 'UASt', 4872], [#, 'Ecol\\lacZ', 5750], [#, 'UAS', 5793], [#, 'P-element', 11131], [#, 'Scer\\GAL4', 17375]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [2, [#, [#, 'lncRNA:Hsromega-RG', 1], [#, 'FBgn0037913-FBgn0286818', 1], [#, 'FBgn0025885-FBgn0286818', 1], [#, pA_site_034101, 1], [#, 'FBgn0003944-FBgn0013263', 1], [#, 'FBgn0003545-FBgn0260639', 1], [#, 'FBgn0014189-FBgn0035110', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [3, [#, [#, 'FBrf0104946', 130692], [#, 'FBrf0213603', 147340], [#, 'FBrf0239962', 162644], [#, 'FBrf0241309', 162865], [#, 'FBrf0200326', 176400], [#, 'FBrf0202436', 182332], [#, 'FBrf0105495', 545468]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [3, [#, [#, 'FBrf0201074', 1], [#, 'FBrf0126212', 1], [#, 'FBrf0134967', 1], [#, 'FBrf0144507', 1], [#, 'FBrf0125535', 1], [#, 'FBrf0155006', 1], [#, 'FBrf0086185', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [4, [#, [#, 15238527.0, 40234], [#, 22936248.0, 43755], [#, 19465919.0, 49687], [#, 28851752.0, 57661], [#, 29191225.0, 75081], [#, 17994087.0, 176400]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [4, [#, [#, 17435764.0, 1], [#, 9345112.0, 1], [#, 29709602.0, 1], [#, 9013669.0, 1], [#, 12921737.0, 1], [#, 27591190.0, 1], [#, 25713358.0, 1]]]). +fb_tsv_pred_stats('num-columns', fbrf_pmid_pmcid_doi, [7]). +fb_tsv_pred_stats('duplicated-rows', fbrf_pmid_pmcid_doi, [0]). +fb_tsv_pred_stats('total-rows', fbrf_pmid_pmcid_doi, [99294]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [1, 99294, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [2, 99294, int64]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [3, 43548, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [4, 91433, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [5, 27, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [6, 99240, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [7, 71, object]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [3, '', 55747]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [3, 55747, [#, ''], [#, 55747]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [4, '', 7862]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [4, 7862, [#, ''], [#, 7862]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [5, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [5, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [6, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [6, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [7, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [7, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC365244', 1], [#, 'PMC365050', 1], [#, 'PMC365176', 1], [#, 'PMC254114', 1], [#, 'PMC6569114', 1], [#, 'PMC365333', 1]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC5728115', 1], [#, 'PMC6569114', 1], [#, 'PMC254114', 1], [#, 'PMC365176', 1], [#, 'PMC365050', 1], [#, 'PMC365244', 1], [#, 'PMC365271', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1016/s0169-4758(97)01058-2', 1], [#, '10.1007/pl00006177', 1], [#, '10.1111/j.1440-169X.1977.00345.x', 1]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1111/j.1440-169X.1977.00345.x', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1002/(SICI)1520-6327(1997)36:1<51::AID-ARCH5>3.0.CO;2-Z', 1], [#, '10.1021/bi970460d', 1], [#, '10.1002/dvg.1020150103', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, 'conference report', 178], [#, abstract, 191], [#, erratum, 306], [#, letter, 308], [#, note, 2322], [#, review, 13466], [#, paper, 81917]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, book, 1], [#, 'bibliographic list', 1], [#, poster, 1], [#, website, 1], [#, lecture, 1], [#, preprint, 1], [#, thesis, 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Dernburg, 2011, Cold Spring Harb. Protoc. 2011(12): ', 3], [#, 'Shen, 2012, Cold Spring Harb. Protoc. 2012(5): ', 3], [#, 'Marley and Baines, 2011, Cold Spring Harb. Protoc. 2011(9): ', 3], [#, 'Sweeney et al., 2012, Cold Spring Harb. Protoc. 2012(2): ', 3], [#, 'Andlauer and Sigrist, 2012, Cold Spring Harb. Protoc. 2012(4): ', 4], [#, 'Macleod, 2012, Cold Spring Harb. Protoc. 2012(7): ', 5]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Rizki et al., 1977, Dev. Growth Differ. 19(4): 345--356', 1], [#, 'Kutskova and Mamon, 1996, Genetika, Moscow 32(10): 1406--1416', 1], [#, 'Kuromi et al., 1997, Neurosci. Res. 27(2): 101--113', 1], [#, 'Kuhl and Wedlich, 1997, BioEssays 19(2): 101--104', 1], [#, 'Kosuda, 1996, Zool. Sci., Tokyo 13(6): 821--824', 1], [#, 'Kosman and Small, 1997, Development 124(7): 1343--1354', 1], [#, 'Kidd and Raff, 1997, J. Cell Sci. 110(2): 209--219', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2019_01, 667], [#, fb_2015_01, 799], [#, fb_2017_04, 959], [#, fb_2016_05, 1908], [#, fb_2021_05, 2210], [#, fb_2018_03, 6651], [#, fb_2011_10, 53869]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2018_02, 363], [#, fb_2012_06, 375], [#, fb_2019_02, 394], [#, fb_2018_06, 402], [#, fb_2012_01, 407], [#, fb_2013_03, 410]]]). +fb_tsv_pred_stats('num-columns', organism_list, [6]). +fb_tsv_pred_stats('duplicated-rows', organism_list, [0]). +fb_tsv_pred_stats('total-rows', organism_list, [57986]). +fb_tsv_pred_stats('unique-values', organism_list, [1, 19142, object]). +fb_tsv_pred_stats('unique-values', organism_list, [2, 31712, object]). +fb_tsv_pred_stats('unique-values', organism_list, [3, 1044, object]). +fb_tsv_pred_stats('unique-values', organism_list, [4, 103, object]). +fb_tsv_pred_stats('unique-values', organism_list, [5, 960, object]). +fb_tsv_pred_stats('unique-values', organism_list, [6, 2, object]). +fb_tsv_pred_stats('null-value-count', organism_list, [1, unknown, 9]). +fb_tsv_pred_stats('missing-values', organism_list, [1, 9, [#, unknown], [#, 9]]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, '', 1]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, unknown, 7]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, '.', 13]). +fb_tsv_pred_stats('missing-values', organism_list, [2, 21, [#, '', unknown, '.'], [#, 1, 7, 13]]). +fb_tsv_pred_stats('null-value-count', organism_list, [3, '', 56943]). +fb_tsv_pred_stats('missing-values', organism_list, [3, 56943, [#, ''], [#, 56943]]). +fb_tsv_pred_stats('null-value-count', organism_list, [4, '', 57883]). +fb_tsv_pred_stats('missing-values', organism_list, [4, 57883, [#, ''], [#, 57883]]). +fb_tsv_pred_stats('null-value-count', organism_list, [5, '', 57027]). +fb_tsv_pred_stats('missing-values', organism_list, [5, 57027, [#, ''], [#, 57027]]). +fb_tsv_pred_stats('null-value-count', organism_list, [6, '', 57353]). +fb_tsv_pred_stats('missing-values', organism_list, [6, 57353, [#, ''], [#, 57353]]). +fb_tsv_pred_stats('most-frequent', organism_list, [1, [#, [#, 'Anopheles', 200], [#, 'Bombus', 206], [#, 'Bactrocera', 208], [#, 'Trigonopterus', 269], [#, 'Carabus', 364], [#, 'Bembidion', 399], [#, 'Drosophila', 801]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [1, [#, [#, 'Aaages', 1], [#, 'Mononeuron', 1], [#, 'Mononychus', 1], [#, 'Monophadnus', 1], [#, 'Monophlebulus', 1], [#, 'Monoplistes', 1], [#, 'Monosiga', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [2, [#, [#, orientalis, 59], [#, 'n. sp.', 63], [#, affinis, 63], [#, japonica, 71], [#, bicolor, 73], [#, 'gen. sp.', 94], [#, 'sp.', 6204]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [2, [#, [#, prior, 1], [#, 'nr. argyropleura AHD-2011', 1], [#, argyropleura, 1], [#, ericae, 1], [#, pictellus, 1], [#, triplex, 1], [#, caudex, 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [3, [#, [#, 'Dvar', 1], [#, 'Dval', 1], [#, 'Dust', 1], [#, 'Duni', 1], [#, 'Duns', 1], [#, 'Dunm', 1]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [3, [#, [#, 'Dpac', 1], [#, 'Duns', 1], [#, 'Duni', 1], [#, 'Dust', 1], [#, 'Dval', 1], [#, 'Dvar', 1], [#, 'Dvnz', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [4, [#, [#, 'eastern newt', 1], [#, rice, 1], [#, 'Japanese medaka', 1], [#, 'red mason bee', 1], [#, 'laboratory mouse', 1], [#, 'fruit fly', 2]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [4, [#, [#, 'Chilean rose tarantula', 1], [#, 'Japanese medaka', 1], [#, rice, 1], [#, 'eastern newt', 1], [#, 'brown planthopper', 1], [#, 'common tobacco', 1], [#, 'starlet sea anemone', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [5, [#, [#, 132243.0, 1], [#, 7244.0, 1], [#, 306030.0, 1], [#, 95458.0, 1], [#, 30050.0, 1], [#, 62873.0, 1]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [5, [#, [#, 103846.0, 1], [#, 30050.0, 1], [#, 95458.0, 1], [#, 306030.0, 1], [#, 7244.0, 1], [#, 132243.0, 1], [#, 252922.0, 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [6, [#, [#, y, 633]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [6, [#, [#, y, 633]]]). +fb_tsv_pred_stats('num-columns', stocks_FB2023_04, [7]). +fb_tsv_pred_stats('duplicated-rows', stocks_FB2023_04, [0]). +fb_tsv_pred_stats('total-rows', stocks_FB2023_04, [147006]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [1, 147006, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [2, 6, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [3, 3, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [4, 276, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [5, 142808, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [6, 143601, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [7, 146977, object]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [2, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [2, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [3, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [3, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [4, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [4, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, '', 21]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, ?, 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [5, 22, [#, '', ?], [#, 21, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [6, '', 28]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [6, 28, [#, ''], [#, 28]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [7, '', 30]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [7, 30, [#, ''], [#, 30]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [4, [#, [#, 'Dwil', 40], [#, 'Dmer', 46], [#, 'Dmau', 52], [#, 'Dvir', 77], [#, 'Dpse', 188], [#, 'Dsim', 225], [#, 'Dmel', 145074]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [4, [#, [#, 'Dora', 1], [#, 'Dgrs', 1], [#, 'Dgun', 1], [#, 'Dnec', 1], [#, 'Dprc', 1], [#, 'Dcai', 1]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [5, [#, [#, 'st[1]', 6], [#, 'w[1118]', 7], [#, 'y[1]', 10], [#, 'v[1]', 11], [#, 'w[1]', 21], [#, 'wild-type', 1649]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [5, [#, [#, 'y[1]; M{v[+t1.8]=WKO.1-B11}ZH-86Fb', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23035/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23034/TM3, Sb[1] Ser[1]', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23027/SM1', 1], [#, 'y[1] w[*]; P{w[+mC]=GSV7}GS23024', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23023/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23022/TM3, Sb[1] Ser[1]', 1]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [6, [#, [#, 'Dana\\wild-type', 29], [#, 'Dari\\wild-type', 31], [#, 'Dwil\\wild-type', 32], [#, 'Dsim\\wild-type', 71], [#, 'Dpse\\wild-type', 95], [#, 'Dmel\\wild-type', 96], [#, 'wild-type', 235]]]). 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+fb_tsv_pred_stats('unique-values', fb_synonym, [1, 1001254, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [2, 906, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [3, 1001062, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [4, 37453, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [5, 13823, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [6, 604083, object]). +fb_tsv_pred_stats('missing-values', fb_synonym, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fb_synonym, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fb_synonym, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [4, '', 947217]). +fb_tsv_pred_stats('missing-values', fb_synonym, [4, 947217, [#, ''], [#, 947217]]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [5, '', 985999]). +fb_tsv_pred_stats('missing-values', fb_synonym, [5, 985999, [#, ''], [#, 985999]]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [6, '', 370940]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [6, none, 1]). +fb_tsv_pred_stats('missing-values', fb_synonym, [6, 370941, [#, '', none], [#, 370940, 1]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [2, [#, [#, 'Dana', 19302], [#, 'Dyak', 19532], [#, 'Dsim', 21050], [#, 'Dpse', 22860], [#, 'Scer', 30891], [#, 'Ssss', 158119], [#, 'Dmel', 551458]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [2, [#, [#, 'Ppla', 1], [#, 'Dsch', 1], [#, 'Dmar', 1], [#, 'Dlev', 1], [#, 'Dalo', 1], [#, 'Abelson', 1], [#, 'Amag', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [3, [#, [#, 'P{eve-lacZ', 8], [#, 'P{ush-lacZ.-2190.-1421}', 10], [#, 'T(2;3)ul10', 11], [#, 'P{SUPor-P.PRE', 11], [#, 'P{Fab7-w', 17], [#, 'P{Mcp-ff', 18], [#, 'P{Mcp-w', 55]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [3, [#, [#, '\\03b1-Spec[2]', 1], [#, 'Dmoj\\GI20484', 1], [#, 'Dmoj\\GI20485', 1], [#, 'Dmoj\\GI20486', 1], [#, 'Dmoj\\GI20487', 1], [#, 'Dmoj\\GI20488', 1], [#, 'Dmoj\\GI20489', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [4, [#, [#, 'Amyrel', 174], [#, 'Saccharomyces cerevisiae UAS construct a of Schertel', 180], [#, 'mt:CoII', 208], [#, 'Saccharomyces cerevisiae UAS construct a of Unknown', 215], [#, 'UAS construct a of Unknown', 235], [#, 'Deficiency (1) yellow Terminal', 251]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [4, [#, [#, 'lethal (3) rI327', 1], [#, 'Secretory Pathway Calcium atpase', 1], [#, 'transfer RNA:Cysteine-GCA 4-1', 1], [#, 'Antioxidant 1 copper chaperone', 1], [#, 'ACAT-related protein required for viability 1', 1], [#, 'ER membrane protein complex subunit 10', 1], [#, 'Structural maintenance of chromosomes 5', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [5, [#, [#, 'cytochrome oxidase II', 33], [#, microsatellite, 39], [#, 'yolk protein 1', 43], [#, 'faint little ball', 43], [#, '28S ribosomal RNA', 75], [#, 'alcohol dehydrogenase', 89]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [5, [#, [#, 'Golgin-84 ortholog|Golgin84', 1], [#, 'INACTIVE|Inactive|inactive', 1], [#, 'lethal (3) 01640', 1], [#, 'female sterile(3)272-9|humpty dumpty|lethal (3) 82Ff|lethal (3) 82Fk', 1], [#, fritz, 1], [#, 'Or46a', 1], [#, 'Gr36a', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [6, [#, [#, 'mt:CoII', 159], [#, 'Amyrel', 164], [#, 1360.0, 208], [#, 'Adh', 232], [#, unspecified, 259], [#, 'INE-1', 2235]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [6, [#, [#, 'GA15920|dpse_GLEANR_14759', 1], [#, 'GM24315|dsec_GLEANR_7324', 1], [#, 'GM24316|dsec_GLEANR_7325', 1], [#, 'GM24317|dsec_GLEANR_7326', 1], [#, 'GM24318|dsec_GLEANR_7327', 1], [#, 'GM24319|dsec_GLEANR_7328', 1], [#, 'GM24320|dsec_GLEANR_7329', 1]]]). +fb_tsv_pred_stats('num-columns', transposon_sequence_se, [6]). +fb_tsv_pred_stats('duplicated-rows', transposon_sequence_se, [13]). +fb_tsv_pred_stats('total-rows', transposon_sequence_se, [13564]). +fb_tsv_pred_stats('unique-values', transposon_sequence_se, [1, 13382, object]). 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7.0, 2], [#, 8.0, 2], [#, 3.0, 3], [#, 6.0, 3], [#, 1.0, 3]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [5, [#, [#, 958.0, 1], [#, 158.0, 1], [#, 536.0, 1], [#, 19.0, 1], [#, 284.0, 1], [#, 588.0, 1], [#, 647.0, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [6, [#, [#, 23.0, 1], [#, 88.0, 1], [#, 8.0, 2], [#, 2.0, 2], [#, 3.0, 2], [#, 9.0, 2]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [6, [#, [#, 7.0, 1], [#, 39.0, 1], [#, 4.0, 1], [#, 6.0, 1], [#, 17.0, 1], [#, 44.0, 1], [#, 5.0, 1]]]). +fb_tsv_pred_stats('num-columns', transposon_sequence_set, [9]). +fb_tsv_pred_stats('duplicated-rows', transposon_sequence_set, [1]). +fb_tsv_pred_stats('total-rows', transposon_sequence_set, [749]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [1, 173, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [2, 1, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [3, 32, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [4, 389, int64]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [5, 600, int64]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [6, 1, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [7, 3, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [8, 2, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [9, 344, object]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [2, '.', 749]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [2, 749, [#, '.'], [#, 749]]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [5, 0, [], []]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [6, '.', 749]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [6, 749, [#, '.'], [#, 749]]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, -, 2]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, +, 576]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, '.', 171]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [7, 749, [#, -, +, '.'], [#, 2, 576, 171]]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [8, '.', 171]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [8, 171, [#, '.'], [#, 171]]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [9, 0, [], []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000176', 11], [#, 'FBte0001207', 12], [#, 'FBte0000021', 12], [#, 'FBte0000109', 12], [#, 'FBte0000037', 13], [#, 'FBte0000675', 14], [#, 'FBte0000322', 17]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000948', 1], [#, 'FBte0001188', 1], [#, 'FBte0000890', 1], [#, 'FBte0000599', 1], [#, 'FBte0000793', 1], [#, 'FBte0000139', 1], [#, 'FBte0000407', 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [2, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [2, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [3, [#, [#, start_codon, 50], [#, non_LTR_retrotransposon, 53], [#, terminal_inverted_repeat, 56], [#, three_prime_LTR, 66], [#, 'LTR_retrotransposon', 67], [#, five_prime_LTR, 67], [#, 'CDS', 227]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [3, [#, [#, region, 1], [#, dinucleotide_repeat_microsatellite_feature, 1], [#, retrotransposon, 1], [#, pseudogene, 1], [#, tetranucleotide_repeat_microsatellite_feature, 1], [#, transposable_element, 1], [#, 'SINE-like elements', 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [4, [#, [#, 1074, 3], [#, 8236, 3], [#, 172, 3], [#, 2, 3], [#, 5145, 4], [#, 331, 4], [#, 1, 285]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [4, [#, [#, 1919, 1], [#, 282, 1], [#, 946, 1], [#, 7248, 1], [#, 6957, 1], [#, 5953, 1], [#, 3811, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [5, [#, [#, 1286, 3], [#, 1728, 3], [#, 452, 3], [#, 12, 3], [#, 5034, 3], [#, 9092, 3], [#, 5519, 3]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [5, [#, [#, 600, 1], [#, 119, 1], [#, 424, 1], [#, 1593, 1], [#, 5642, 1], [#, 2624, 1], [#, 2562, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [6, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [6, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [7, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [7, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [9, [#, [#, 'Ontology_term=SO:0000205', 12], [#, 'Ontology_term=SO:0000551', 24], [#, 'Ontology_term=SO:0000318', 50], [#, 'Ontology_term=SO:0000481', 56], [#, 'Ontology_term=SO:0000316', 62], [#, 'Ontology_term=SO:0000426', 67], [#, 'Ontology_term=SO:0000425', 68]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [9, [#, [#, 'ID=FBte0001033;name=Dmel\\mariner2;source=?;type=DNA;subtype=Tc1-Mariner', 1], [#, 'ID=FBte0000773;name=Dana\\Tom;source=Z24451;type=?;subtype=?', 1], [#, 'ID=FBte0000591;name=Dmel\\invader6;source=NT_033778;type=LTR;subtype=Gypsy', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\pol;translation=KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATADGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVDQHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRLGVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQVPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESHLNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGLCGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSGVGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLMSNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVKLVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKTLERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNIGIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLTAVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGSTYSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVSKPVTTPSLDRRS', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\gag;translation=MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATERVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLAMERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASSDLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHKFDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRVLRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYEAENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAARNQSTMTDQ', 1], [#, 'ID=FBte0001136;name=Dmel\\gypsy12;source=AE003789;type=LTR;subtype=Gypsy', 1], [#, 'ID=FBte0001041;name=Dmel\\gypsy11;source=?;type=LTR;subtype=Gypsy', 1]]]). + +:- forall(fb_tsv_pred_stats(P,A1,Rest), (G=..[P,A1|Rest],assert(G))). diff --git a/metta_vspace/pyswip-12-15/flybase_main.pl b/metta_vspace/pyswip-12-15/flybase_main.pl new file mode 100755 index 00000000..072668f0 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_main.pl @@ -0,0 +1,2597 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + + +:- ensure_loaded(swi_support). + + +fb_stats:- metta_stats,!. + +'&flybase':for_metta('&flybase',P):- fb_pred(F,A),length(L,A),P=[F|L],apply(F,L). + +% ============== +% OBO LOADER +% ============== +:- set_option_value(encoding,utf8). +:- ensure_loaded(flybase_obo). + + +:- ensure_loaded(metta_interp). + +create_flybase_qlf:- + all_data_once, + % all_metta_once, + load_flybase_full, + all_data_done, + % all_metta_done, + shell('swipl -g "qcompile(whole_flybase)" -t halt'). + +save_to_pl:- tell('flybase_metta.pl'), + forall(fb_pred(F,A),listing(F/A)),told. + +% ============== +% VSPACE LOADER +% ============== +%:- set_option_value(max_per_file,10_000_000). +%:- set_option_value(max_per_file,1_000). +%:- set_option_value(max_per_file,300). +:- set_option_value(max_per_file,inf+1). +:- set_option_value(max_per_file,inf). +:- set_option_value(max_per_file,20_000). + +:- set_option_value(max_disk_cache,1000). +:- set_option_value(samples_per_million,30). +:- set_option_value(full_canon,true). + + +flybase_identifier('FBab', 'Aberration'). +flybase_identifier('FBal', 'Allele'). +flybase_identifier('FBba', 'Balancer'). +flybase_identifier('FBbt', 'AnatomyTerm'). +flybase_identifier('FBch', 'ChromosomeArm'). +flybase_identifier('FBcl', 'Clone'). +flybase_identifier('FBcv', 'ControlledVocabulary'). +flybase_identifier('FBdv', 'DevelopmentalStageTerm'). +flybase_identifier('FBgg', 'GeneGroup'). +flybase_identifier('FBgn', 'Gene'). +flybase_identifier('FBhh', 'HumanDisease'). +flybase_identifier('FBig', 'GeneInteraction'). +flybase_identifier('FBim', 'Image'). +flybase_identifier('FBlc', 'LargeDatasetMetadata'). +flybase_identifier('FBmc', 'MolecularConstruct'). +flybase_identifier('FBms', 'MolecularSegment'). +flybase_identifier('FBpl', 'Probe'). +flybase_identifier('FBpp', 'Polypeptide'). +flybase_identifier('FBrf', 'Reference'). +flybase_identifier('FBsf', 'SequenceFeature'). +flybase_identifier('FBsn', 'GeneStrain'). +flybase_identifier('FBst', 'GeneStock'). +flybase_identifier('FBtc', 'CellLine'). +flybase_identifier('FBti', 'TransposableIlementInsertion'). +flybase_identifier('FBto', 'ExperimentalTool'). +flybase_identifier('FBte', 'TransgenicElement'). +flybase_identifier('FBtp', 'Transposon'). %flybase_identifier('FBtp', 'transgenic construct or natural transposon'). +flybase_identifier('FBtr', 'Transcript'). + +% FlyBase prefixes +symbol_prefix(Prefix, flybase, Desc):- flybase_identifier(Prefix, Desc). +% Some common OBO prefixes (Note: these are more generalized and not specific to FlyBase) +symbol_prefix('GO', obo, 'Gene Ontology'). +symbol_prefix('PO', obo, 'Plant Ontology'). +symbol_prefix('DOID', obo, 'Disease Ontology'). +symbol_prefix('UBERON', obo, 'Uber-anatomy ontology'). +symbol_prefix('CHEBI', obo, 'Chemical Entities of Biological Interest'). + + +%:- abolish(gp_information/0). +:- forall(retract(fb_pred(F,0)),abolish(F/0)). +:- include(flybase_learn). + +%fbd(X,P):- fb_pred(F,A),functor(P,F,A),arg(_,P,X), no_repeats(P,call(P)). +fbdead:- fb_pred(F,A),functor(P,F,A),arg(_,P,xxxxxxxxxxxxxxxxx),no_repeats(P,call(P)), + writeln(fbdead=P),fail. +fbdead. + +:- use_module(library(csv)). + +%:- current_prolog_flag(libswipl,_)->use_module(library(logicmoo_utils)); true. + + + + + +/* mined +; Total Atoms (Atomspace size): .................................................. 56,354,849 +; ConceptNodes: ............................................................. 9,472,616 +; Bytes Per Atom (Average): ....................................................... 140 +; Bytes Per ConceptNode (Average): ................................................ 120 +; Relational Memory: ............................................................ 7.39G +; ConceptNode Memory: ........................................................... 1.07G +; Atoms per minute: ......................................................... 3,491,880 +; Total Physical Memory Used: ................................................... 9.08G +; Runtime (days:hh:mm:ss): ................................................. 0:00:16:08 + + +; Total Atoms (Atomspace size): .................................................. 38,812,356 +; ConceptNodes: ............................................................. 9,380,821 +; Total Memory Used: ............................................................ 8.26G +; Runtime (days:hh:mm:ss): ................................................. 0:00:19:15 + + +; Total Atoms (Atomspace size): .................................................. 38,822,366 +; ConceptNodes: ............................................................. 9,824,355 +; Random samples: ................................................................. 805 +; Total Memory Used: ............................................................ 8.18G +; Runtime (days:hh:mm:ss): ................................................. 0:00:08:28 + +*/ + +recount_total_loaded_symbols:- flag(total_loaded_symbols,_,0),full_symbol_count(Was),flag(total_loaded_symbols,_,Was). + +% Convert flybase data from CSV to Prolog format. +load_flybase:- is_scryer,!,load_flybase_files. +load_flybase:- + with_option(mettafiles,false, + (make,recount_total_loaded_symbols,!,load_flybase_files,!,cleanup_arities,!,fb_stats)). +load_flybase_dirs:- + load_flybase('./data/ftp.flybase.net/releases/current/das_precomputed/*'), + load_flybase('./precomputed_files/*'), + load_flybase('./data/ftp.flybase.net/releases/current/./*sv'),!. + + + +/* + +declare -a StringArray=(\ +"fbgn_fbtr_fbpp_expanded_*.tsv.gz" \ +"physical_interactions_mitab*.tsv.gz" \ +"dmel_gene_sequence_ontology_annotations*.tsv.gz" \ +"gene_map_table_*.tsv.gz" \ +"ncRNA_genes_fb_*.json.gz" \ +"gene_association.fb.gz" \ +"gene_genetic_interactions_*.tsv.gz" \ +"allele_genetic_interactions_*.tsv.gz" \ +"allele_phenotypic_data_*.tsv.gz" \ +"disease_model_annotations*.tsv.gz" \ +"dmel_human_orthologs_disease*.tsv.gz" \ +"fbrf_pmid_pmcid_doi*.tsv.gz") +*/ + +load_flybase_files:- + ftp_data(Dir), + with_cwd(Dir,load_flybase_files_ftp). + + + +load_flybase_das_11:- + % DAS''s 11 tsv and 1 json file + load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), + load_flybase('./precomputed_files/*/fbgn_fbtr_fbpp_expanded*.tsv'), + load_flybase('./precomputed_files/*/physical_interactions_mitab*.tsv'), + load_flybase('./precomputed_files/*/dmel_gene_sequence_ontology_annotations*.tsv'), + load_flybase('./precomputed_files/*/gene_map_table*.tsv'), + load_flybase('./precomputed_files/*/gene_association_*.fb',tsv), + load_flybase('./precomputed_files/*/gene_genetic_interactions*.tsv'), + load_flybase('./precomputed_files/*/allele_genetic_interactions*.tsv'), + % Note: this file replaces 'allele_phenotypic_data_*.tsv' from FB2023_01 onward. + load_flybase('./precomputed_files/alleles/genotype_phenotype_data*.tsv'), + load_flybase('./precomputed_files/*/allele_phenotypic_data*.tsv'), + + + load_flybase('./precomputed_files/*/disease_model_annotations*.tsv'), + load_flybase('./precomputed_files/*/dmel_human_orthologs_disease*.tsv'), + load_flybase('./precomputed_files/*/fbrf_pmid_pmcid_doi*.tsv'), + format("~n================================================================================================="), + format("~n=====================================Das Checkpoint=============================================="), + format("~n================================================================================================="), + fb_stats, + format("~n================================================================================================="), + format("~n================================================================================================="), + format("~n=================================================================================================~n"), + !. + +load_flybase_files_ftp:- + maplist(must_det_ll,[ + load_flybase('./precomputed_files/collaborators/pmid_fbgn_uniprot*.tsv'), + + %% load_flybase_obo_files, + load_flybase_das_11, + % 36 more that DAS doesnt load + + + load_flybase('./precomputed_files/alleles/fbal_to_fbgn*.tsv'), + + load_flybase('./precomputed_files/clones/cDNA_clone_data*.tsv'), + load_flybase('./precomputed_files/clones/genomic_clone_data*.tsv'), + load_flybase('./precomputed_files/collaborators/fbgn_uniprot*.tsv'), + load_flybase('./precomputed_files/collaborators/gp_information*.fb'), + load_flybase('./precomputed_files/genes/automated_gene_summaries*.tsv'), + load_flybase('./precomputed_files/genes/best_gene_summary*.tsv'), + load_flybase('./precomputed_files/genes/Dmel_enzyme_data*.tsv'), + load_flybase('./precomputed_files/genes/dmel_unique_protein_isoforms*.tsv'), + load_flybase('./precomputed_files/genes/fbgn_annotation_ID*.tsv'), + with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy1_overlaps*.tsv')), + with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy2_overlaps*.tsv')), + with_option([pred_va=false],load_flybase('./precomputed_files/genes/fbgn_fbtr_fbpp*.tsv')), + load_flybase('./precomputed_files/genes/fbgn_gleanr*.tsv'), + load_flybase('./precomputed_files/genes/fbgn_NAseq_Uniprot*.tsv'), + load_flybase('./precomputed_files/genes/gene_functional_complementation*.tsv'), + load_flybase('./precomputed_files/genes/gene_group_data*.tsv'), + load_flybase('./precomputed_files/genes/gene_groups_HGNC*.tsv'), + load_flybase('./precomputed_files/genes/gene_rpkm_matrix*.tsv'), + load_flybase('./precomputed_files/genes/gene_rpkm_report*.tsv'), + load_flybase('./precomputed_files/genes/gene_snapshots*.tsv'), + load_flybase('./precomputed_files/genes/pathway_group_data*.tsv'), + %load_flybase('./precomputed_files/insertions/construct_maps.zip'), + load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'), + load_flybase('./precomputed_files/insertions/insertion_mapping*.tsv'), + load_flybase('./precomputed_files/map_conversion/cyto-genetic-seq*.tsv'), + load_flybase('./precomputed_files/metadata/dataset_metadata*.tsv'), + load_flybase('./precomputed_files/orthologs/dmel_paralogs*.tsv'), + load_flybase('./precomputed_files/references/entity_publication*.tsv'), + load_flybase('./precomputed_files/species/organism_list*.tsv'), + load_flybase('./precomputed_files/stocks/stocks_FB*.tsv'), + load_flybase('./precomputed_files/synonyms/fb_synonym*.tsv'), + format("~n================================================================================================="), + format("~n==========================Should be 18 minute Checkpoint========================================="), + format("~n================================================================================================="), + fb_stats, + format("~n================================================================================================="), + format("~n================================================================================================="), + format("~n=================================================================================================~n"), + load_flybase('./precomputed_files/map_conversion/cytotable.txt',tsv), + load_flybase('./precomputed_files/map_conversion/genome-cyto-seq.txt',tsv), + load_fbase_after_17]), + !. + +load_fbase_after_17:- + %load_flybase('./precomputed_files/genes/scRNA-Seq_gene_expression*.tsv'), + must_det_ll(load_flybase('./precomputed_files/transposons/transposon_sequence_set.gff',tsv)), + load_flybase('./precomputed_files/transposons/transposon_sequence_set.fa'), + load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), + load_obo_files, + %% load_flybase_chado, + !. + +load_flybase_obo_files:- + load_flybase('./precomputed_files/ontologies/doid.obo'), + load_flybase('./precomputed_files/ontologies/fly_anatomy.obo'), + load_flybase('./precomputed_files/ontologies/fly_development.obo'), + load_flybase('./precomputed_files/ontologies/flybase_controlled_vocabulary.obo'), + load_flybase('./precomputed_files/ontologies/flybase_stock_vocabulary.obo'), + load_flybase('./precomputed_files/ontologies/gene_group_FB*.obo'), + load_flybase('./precomputed_files/ontologies/go-basic.obo'), + load_flybase('./precomputed_files/ontologies/image.obo'), + load_flybase('./precomputed_files/ontologies/psi-mi.obo'), + load_flybase('./precomputed_files/ontologies/slice.chebi.obo'), + load_flybase('./precomputed_files/ontologies/so-simple.obo'), + load_flybase('./precomputed_files/ontologies/chebi_fb_*.obo'), + !. + + + +/* +:- ensure_loaded('./reqs/obo_core/prolog/obo_core/goslim.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/iao_metadata.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/oio.pl'). +:- ensure_loaded('./reqs/obo_ro/prolog/obo_ro/ro.pl'). + +:- attach_packs('./reqs',[]). +:- ensure_loaded(library(obo_metadata)). +:- goslim:ensure_loaded(library(obo_core/goslim)). +:- ensure_loaded(library(obo_ro/ro)). + +937_381_148 +*/ + + +/* +(load_fb_obo "data/ontologies/so.obo") + +; Total Atoms (Atomspace size): ...................................................... 19,967 +; ConceptNodes: ................................................................. 4,258 +; Random samples: ................................................................. 158 +; Total Memory Used: ........................................................ 1,089,408 +; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + + +(load_fb_obo "./precomputed_files/ontologies/so-simple.obo" ) + +; Total Atoms (Atomspace size): ...................................................... 19,484 +; ConceptNodes: ................................................................. 4,194 +; Random samples: ................................................................. 160 +; Total Memory Used: ........................................................ 1,089,408 +; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + +*/ + +/* +?- xinfo('SO:0000797'). +ontology_info(id_type,'SO:0000797','Term'). +def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). +has_quality('SO:0000797','SO:0000782',' natural'). +intersection_of('SO:0000797','SO:0000101',' transposable_element'). +intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). +ontology_info(is_a,'SO:0000797','SO:0000101'). +ontology_info(is_a,'SO:0000797','SO:0001038'). +ontology_info(name,'SO:0000797',"natural_transposable_element"). +synonym('SO:0000797',"natural transposable element",'EXACT',[]). + + + +xinfo('SO:0000797'). +ontology_info(id_type,'SO:0000797','Term'). +def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). +has_quality('SO:0000797','SO:0000782',' natural'). +intersection_of('SO:0000797','SO:0000101',' transposable_element'). +intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). +ontology_info(is_a,'SO:0000797','SO:0000101'). +ontology_info(is_a,'SO:0000797','SO:0001038'). +ontology_info(name,'SO:0000797',"natural_transposable_element"). +synonym('SO:0000797',"natural transposable element",'EXACT',[]). + +*/ + +load_obo_files:- + %load_obo('./reqs/obonet/tests/data/?*.obo'), + + load_flybase('./precomputed_files/*/so*.obo'), + fb_stats, + load_flybase('./data/SO-Ontologies/Ontology_Files/*.obo'), + % Total Atoms (Atomspace size): ...................................................... 20,069 + % ConceptNodes: ................................................................. 4,200 + % Random samples: ................................................................. 159 + % Total Memory Used: ........................................................ 1,089,408 + % Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + load_flybase('./data/SO-Ontologies/Ontology_Files/subsets/*.obo'), + % Total Atoms (Atomspace size): ...................................................... 20,551 + % ConceptNodes: ................................................................. 4,270 + % Random samples: ............................................................... 2,928 + % Total Memory Used: ........................................................ 1,154,944 + % Runtime (days:hh:mm:ss): ................................................. 0:00:00:40 + + load_flybase('./data/Legacy/Cross_Products/*.obo'), + % Total Atoms (Atomspace size): ...................................................... 20,968 + % ConceptNodes: ................................................................. 4,306 + % Random samples: .............................................................. 14,418 + % Total Memory Used: ........................................................ 9,828,592 + % Runtime (days:hh:mm:ss): ................................................. 0:00:01:14 + %print_loaded_from_files, + %loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). + % only reflects new entries ... thus full OBO adds 481 entries to the simple one + %loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). + + %loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). + %loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). + %loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). + %loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). + %loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). + %loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). + %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). + %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). + + load_flybase('./precomputed_files/*/*.obo'), + % Total Atoms (Atomspace size): ................................................... 3,489,211 + % ConceptNodes: ............................................................... 688,541 + % Random samples: .............................................................. 26,006 + % Total Memory Used: ............................................................ 1.19G + % Runtime (days:hh:mm:ss): ................................................. 0:00:34:35 +print_loaded_from_files, +%loaded_from_file(2_637_502, './precomputed_files/ontologies/chebi_fb_2023_04.obo'). +%loaded_from_file( 451_168, './precomputed_files/ontologies/go-basic.obo'). +%loaded_from_file( 221_705, './precomputed_files/ontologies/fly_anatomy.obo'). +%loaded_from_file( 128_798, './precomputed_files/ontologies/doid.obo'). +%loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). +%loaded_from_file( 9_852, './precomputed_files/ontologies/psi-mi.obo'). +%loaded_from_file( 8_644, './precomputed_files/ontologies/gene_group_FB2023_04.obo'). +%loaded_from_file( 7_605, './precomputed_files/ontologies/flybase_controlled_vocabulary.obo'). +%loaded_from_file( 1_598, './precomputed_files/ontologies/fly_development.obo'). +%loaded_from_file( 834, './precomputed_files/ontologies/image.obo'). +%loaded_from_file( 491, './precomputed_files/ontologies/flybase_stock_vocabulary.obo'). +%loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). +%loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). +%loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). +%loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). +%loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). +%loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). +%loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). +%loaded_from_file( 25, './precomputed_files/ontologies/so-simple.obo'). +%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). +%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). +%loaded_from_file( 21, './precomputed_files/ontologies/slice.chebi.obo'). + !. + + + + + + +load_flybase_chado:- % 359 tables with 937,381,148 rows + + with_option([row_1_is_header=true,max_per_file=100_000],load_flybase('./data/tsv_exports/public/*.tsv')). + + +est_size( 22_220_267, dataset_metadata). +est_size( 5_580_889, entity_publication). +est_size( 2_928_712, gene_rpkm_report). +est_size( 2_262_949, pmid_fbgn_uniprot). +est_size( 1_611_349, ontology_info). +est_size( 1_316_132, fbgn_NAseq_Uniprot). +est_size( 1_045_549, property_value). +est_size( 1_001_254, synonym). +est_size( 722_570, cDNA_clone). +est_size( 384_206, genotype_phenotype). +est_size( 363_453, allele_genetic_interactions). +est_size( 288_469, fbal_to_fbgn). +est_size( 245_829, gene_map_table). +est_size( 223_056, dmel_paralogs). +est_size( 212_010, insertion_mapping). +est_size( 174_894, fbgn_gleanr). +est_size( 147_155, stocks). +est_size( 99_294, fbrf_pmid_pmcid_doi). +est_size( 57_986, organism_list). +est_size( 51_248, physical_interactions_mitab). +est_size( 50_401, genomic_clone). +est_size( 38_591, dmel_gene_sequence_ontology_annotations). +est_size( 35_732, fbgn_fbtr_fbpp_expanded). +est_size( 35_732, fbgn_fbtr_fbpp). +est_size( 35_107, dmel_human_orthologs_disease). +est_size( 32_530, fbgn_uniprot). +est_size( 32_143, best_gene_summary). +est_size( 27_827, receives_synaptic_input_in_region). +est_size( 27_370, automated_gene_summaries). +est_size( 26_750, disease_model_annotations). +est_size( 22_453, dmel_unique_protein_isoforms). +est_size( 20_392, sends_synaptic_output_to_region). +est_size( 20_322, gene_genetic_interactions). +est_size( 17_901, fbgn_annotation_ID). +est_size( 17_748, gene_rpkm_matrix). +est_size( 14_139, part_of). +est_size( 13_986, gene_snapshots). +est_size( 13_394, seq). +est_size( 12_497, fbgn_exons2affy1_overlaps). +est_size( 13_746, fbgn_exons2affy2_overlaps). +est_size( 10_958, gene_group). +est_size( 5_680, has_synaptic_IO_in). +est_size( 3_969, 'Dmel_enzyme'). +est_size( 3_120, regulates). +est_size( 2_704, negatively_regulates). +est_size( 2_692, positively_regulates). +est_size( 2_126, has_soma_location). +est_size( 1_941, overlaps). +est_size( 1_744, develops_from). +est_size( 1_711, gene_groups_HGNC). +est_size( 1_149, sends_synaptic_output_to_cell). +est_size( 993, pathway_group). +est_size( 738, receives_synaptic_input_from_neuron). +est_size( 706, fasciculates_with). +est_size( 601, 'cyto-genetic-seq'). +est_size( 572, has_sensory_dendrite_in). +est_size( 526, continuous_with). +est_size( 464, gene_functional_complementation). +est_size( 311, synapsed_via_type_Ib_bouton_to). +est_size( 287, innervates). +est_size( 239, immediately_preceded_by). +est_size( 229, has_fasciculating_neuron_projection). +est_size( 200, synapsed_via_type_II_bouton_to). +est_size( 186, receives_synaptic_input_throughout). +est_size( 185, substage_of). +est_size( 165, has_quality). +est_size( 156, has_part). +est_size( 151, def). +est_size( 148, synapsed_via_type_Is_bouton_to). +est_size( 126, attached_to). +est_size( 100, subsetdef). +est_size( 89, receives_input_from). +est_size( 88, disjoint_from). +est_size( 74, sends_synaptic_output_throughout). +est_size( 68, develops_into). +est_size( 64, derives_from). +est_size( 30, has_origin). +est_size( 30, electrically_synapsed_to). +est_size( 23, develops_directly_from). +est_size( 20, attached_to_part_of). +est_size( 18, synonymtypedef). +est_size( 17, innervated_by). +est_size( 14, synapsed_via_type_III_bouton_to). +est_size( 11, has_synaptic_IO_throughout). +est_size( 9, transitive_over). +est_size( 8, composed_primarily_of). +est_size( 7, transcribed_to). +est_size( 7, inverse_of). +est_size( 6, conditionality). +est_size( 6, adjacent_to). +est_size( 4, non_functional_homolog_of). +est_size( 3, xref). +est_size( 3, variant_of). +est_size( 3, member_of). +est_size( 3, develops_from_part_of). +est_size( 3, contains). +est_size( 3, 'RO'). +est_size( 2, connected_to). +est_size( 1, transcribed_from). +est_size( 1, guided_by). +% SQL +sql_est_size( 248_392_753,feature_relationship). +sql_est_size( 141_933_326,dbxrefprop). +sql_est_size( 98_464_501,featureloc). +sql_est_size( 92_616_769,feature). +sql_est_size( 78_909_674,analysisfeature). +sql_est_size( 61_025_741,feature_dbxref). +sql_est_size( 53_031_862,library_featureprop). +sql_est_size( 39_950_319,dbxref). +sql_est_size( 27_923_221,library_feature). +sql_est_size( 23_805_221,feature_relationshipprop). +sql_est_size( 21_279_999,featureprop). +sql_est_size( 7_474_185,feature_synonym). +sql_est_size( 6_554_427,synonym). +sql_est_size( 5_578_280,feature_pub). +sql_est_size( 5_341_100,featureprop_pub). +sql_est_size( 4_865_118,feature_relationship_pub). +sql_est_size( 2_813_405,feature_interactionprop). +sql_est_size( 2_464_355,feature_cvterm). +sql_est_size( 1_950_807,feature_cvtermprop). +sql_est_size( 1_377_258,feature_interaction). +sql_est_size( 1_116_490,feature_genotype). +sql_est_size( 888_210,pubprop). +sql_est_size( 734_870,featureloc_pub). +sql_est_size( 688_734,pubauthor). +sql_est_size( 518_569,genotype_synonym). +sql_est_size( 495_848,genotype). +sql_est_size( 491_538,feature_pubprop). +sql_est_size( 466_209,phenstatement). +sql_est_size( 413_338,pub_dbxref). +sql_est_size( 382_054,genotype_dbxref). +sql_est_size( 351_942,phendesc). +sql_est_size( 277_992,phenotype_comparison_cvterm). +sql_est_size( 254_298,feature_expressionprop). +sql_est_size( 252_544,phenotype_comparison). +sql_est_size( 251_928,pub). +sql_est_size( 242_344,pub_relationship). +sql_est_size( 227_406,feature_expression). +sql_est_size( 213_360,cvterm_relationship). +sql_est_size( 212_142,cvterm_dbxref). +sql_est_size( 209_164,interaction_cvterm). +sql_est_size( 195_000,cvtermsynonym). +sql_est_size( 180_311,expression_cvterm). +sql_est_size( 167_582,update_track). +sql_est_size( 150_401,feature_relationshipprop_pub). +sql_est_size( 149_855,stockcollection_stock). +sql_est_size( 149_855,stock). +sql_est_size( 149_835,stock_genotype). +sql_est_size( 146_846,interactionprop). +sql_est_size( 122_004,interaction_group). +sql_est_size( 119_611,feature_interaction_pub). +sql_est_size( 112_784,interaction_pub). +sql_est_size( 112_781,interaction). +sql_est_size( 101_687,interaction_group_feature_interaction). +sql_est_size( 96_405,feature_grpmember_pub). +sql_est_size( 94_765,cvterm). +sql_est_size( 79_466,expression_cvtermprop). +sql_est_size( 74_873,interactionprop_pub). +sql_est_size( 73_828,library_interaction). +sql_est_size( 57_144,organism). +sql_est_size( 48_730,humanhealthprop). +sql_est_size( 41_075,feature_grpmember). +sql_est_size( 36_960,expression). +sql_est_size( 23_565,library_cvterm). +sql_est_size( 23_483,library_cvtermprop). +sql_est_size( 21_251,cvtermprop). +sql_est_size( 19_797,libraryprop). +sql_est_size( 18_396,phenotype). +sql_est_size( 17_871,phenotype_cvterm). +sql_est_size( 16_617,humanhealth_dbxrefprop). +sql_est_size( 16_529,interaction_expressionprop). +sql_est_size( 16_318,humanhealth_pub). +sql_est_size( 15_400,library_synonym). +sql_est_size( 15_355,humanhealth_dbxref). +sql_est_size( 15_142,cell_line_feature). +sql_est_size( 14_972,libraryprop_pub). +sql_est_size( 13_694,interaction_expression). +sql_est_size( 13_218,interaction_cell_line). +sql_est_size( 10_720,library_pub). +sql_est_size( 9_870,library_relationship). +sql_est_size( 9_851,humanhealthprop_pub). +sql_est_size( 9_558,library_dbxref). +sql_est_size( 8_339,library_relationship_pub). +sql_est_size( 7_095,grp_pub). +sql_est_size( 6_719,cell_line_pub). +sql_est_size( 6_657,grp_relationship). +sql_est_size( 6_605,strain_synonym). +sql_est_size( 5_990,grp_synonym). +sql_est_size( 5_947,humanhealth_synonym). +sql_est_size( 5_785,strainprop). +sql_est_size( 5_783,strainprop_pub). +sql_est_size( 5_769,library). +sql_est_size( 5_543,grp_cvterm). +sql_est_size( 5_444,cell_line_synonym). +sql_est_size( 5_277,library_expression). +sql_est_size( 5_187,grpprop). +sql_est_size( 5_159,grpmember). +sql_est_size( 4_469,humanhealth_dbxrefprop_pub). +sql_est_size( 4_450,library_expressionprop). +sql_est_size( 4_415,grpprop_pub). +sql_est_size( 4_319,stock_cvterm). +sql_est_size( 3_832,library_dbxrefprop). +sql_est_size( 3_829,grpmemberprop). +sql_est_size( 3_777,genotype_cvterm). +sql_est_size( 3_744,humanhealth_featureprop). +sql_est_size( 3_721,library_strainprop). +sql_est_size( 3_721,library_strain). +sql_est_size( 3_625,humanhealth_feature). +sql_est_size( 2_641,grp_dbxref). +sql_est_size( 2_263,humanhealth_relationship). +sql_est_size( 2_220,humanhealth_relationship_pub). +sql_est_size( 2_093,strain_pub). +sql_est_size( 2_010,grp_relationship_pub). +sql_est_size( 1_939,strain_cvtermprop). +sql_est_size( 1_939,strain_cvterm). +sql_est_size( 1_814,grp). +sql_est_size( 1_777,strain_dbxref). +sql_est_size( 1_776,strain). +sql_est_size( 1_739,organism_dbxref). +sql_est_size( 1_643,feature_humanhealth_dbxref). +sql_est_size( 1_540,humanhealth_cvtermprop). +sql_est_size( 1_540,humanhealth_cvterm). +sql_est_size( 1_515,humanhealth). +sql_est_size( 1_300,cell_lineprop_pub). +sql_est_size( 1_291,cell_lineprop). +sql_est_size( 1_215,cell_line_dbxref). +sql_est_size( 1_198,cell_line_libraryprop). +sql_est_size( 1_081,cell_line_library). +sql_est_size( 1_013,organism_pub). +sql_est_size( 821,organismprop). +sql_est_size( 731,organismprop_pub). +sql_est_size( 714,cell_line_cvterm). +sql_est_size( 518,db). +sql_est_size( 435,strain_relationship_pub). +sql_est_size( 435,strain_relationship). +sql_est_size( 320,cell_line). +sql_est_size( 308,analysis). +sql_est_size( 238,stockprop). +sql_est_size( 171,cell_line_relationship). +sql_est_size( 139,strain_featureprop). +sql_est_size( 139,strain_feature). +sql_est_size( 107,strain_phenotypeprop). +sql_est_size( 96,humanhealth_pubprop). +sql_est_size( 73,cell_line_cvtermprop). +sql_est_size( 71,cv). +sql_est_size( 54,strain_phenotype). +sql_est_size( 40,environment). +sql_est_size( 27,stockcollectionprop). +sql_est_size( 26,contact). +sql_est_size( 18,environment_cvterm). +sql_est_size( 11,organism_library). +sql_est_size( 7,stockcollection). +sql_est_size( 1,lock). +sql_est_size( 0,analysisgrp). +sql_est_size( 0,analysisgrpmember). +sql_est_size( 0,analysisprop). +sql_est_size( 0,audit_chado). +sql_est_size( 0,cell_line_strain). +sql_est_size( 0,cell_line_strainprop). +sql_est_size( 0,cvtermpath). +sql_est_size( 0,eimage). +sql_est_size( 0,expression_image). +sql_est_size( 0,expression_pub). +sql_est_size( 0,expressionprop). +sql_est_size( 0,feature_cvterm_dbxref). +sql_est_size( 0,feature_phenotype). +sql_est_size( 0,featuremap). +sql_est_size( 0,featuremap_pub). +sql_est_size( 0,featurepos). +sql_est_size( 0,featurerange). +sql_est_size( 0,genotype_cvtermprop). +sql_est_size( 0,genotype_pub). +sql_est_size( 0,genotypeprop). +sql_est_size( 0,genotypeprop_pub). +sql_est_size( 0,grp_pubprop). +sql_est_size( 0,grp_relationshipprop). +sql_est_size( 0,grpmember_cvterm). +sql_est_size( 0,grpmember_pub). +sql_est_size( 0,grpmemberprop_pub). +sql_est_size( 0,humanhealth_phenotype). +sql_est_size( 0,humanhealth_phenotypeprop). +sql_est_size( 0,interaction_cvtermprop). +sql_est_size( 0,library_grpmember). +sql_est_size( 0,library_humanhealth). +sql_est_size( 0,library_humanhealthprop). +sql_est_size( 0,organism_cvterm). +sql_est_size( 0,organism_cvtermprop). +sql_est_size( 0,organism_grpmember). +sql_est_size( 0,project). +sql_est_size( 0,stock_dbxref). +sql_est_size( 0,stock_pub). +sql_est_size( 0,stock_relationship). +sql_est_size( 0,stock_relationship_pub). +sql_est_size( 0,stockprop_pub). +sql_est_size( 0,tableinfo). + +est_size_loaded(N,F/A):- fb_pred_major(F,A),metta_stats(F,A,N). + +fb_pred_major(F,A):- fb_pred_m(F,A). +fb_pred_major(F,A):- fb_pred(F,A), + \+ fb_pred_m(F,A), \+ (fb_pred(F,A2),A2>A). + +fb_pred_m(fbgn_exons2affy1_overlaps,2). +fb_pred_m(fbgn_exons2affy2_overlaps,2). + +print_loaded_from_files:- + findall(print_est_size(loaded_from_file,N,F), + is_loaded_from_file_count(F,N),L), + sort(L,S),reverse(S,R),maplist(call,R), + print_est_sizes. + +fb_info:- print_loaded_from_files,fb_stats. + +fb_show:- print_loaded_from_files,fb_stats. + +print_est_sizes:- + findall(print_est_size(est_size_loaded,N,F), + est_size_loaded(N,F),L), + sort(L,S),reverse(S,R),maplist(call,R). + +print_est_size(F,N1,S):- number(S), \+ number(N1),!,print_est_size(F,S,N1). +print_est_size(F,N1,S):- format('~N (~q ~@ ~q) ',[F,pad_number(N1,15),S]),!. + +% pad_number(Number, N) pads Number with spaces to occupy N spaces in total +% and includes underscores as the thousand separator. +pad_number(Number, N) :- + sformat(S,"~t~D~*|", [Number,N]),symbolic_list_concat(L,',',S), + symbolic_list_concat(L,'_',SS),write(SS). + + +% Process a file or directory path with a given predicate. +with_wild_path(Fnicate, Dir) :- extreme_debug(fbug(with_wild_path(Fnicate, Dir))),fail. +with_wild_path(_Fnicate, []) :- !. +with_wild_path(Fnicate, Dir) :- is_scryer, symbol(Dir), !, must_det_ll_r((path_chars(Dir,Chars), with_wild_path(Fnicate, Chars))). +with_wild_path(Fnicate, Chars) :- \+ is_scryer, \+ symbol(Chars), !, must_det_ll_r((name(Atom,Chars), with_wild_path(Fnicate, Atom))). +with_wild_path(Fnicate, File) :- exists_file(File), !, must_det_ll_r(( call(Fnicate, File))). +with_wild_path(Fnicate, File) :- !, with_wild_path_swi(Fnicate, File). +with_wild_path(Fnicate, Dir) :- exists_directory(Dir), !, + must_det_ll_r((directory_files(Dir, Files), + maplist(directory_file_path(Dir,Files),Paths), + maplist(path_chars,Paths,CharPaths), + maplist(with_wild_path(Fnicate), CharPaths))), !. +with_wild_path(Fnicate, File) :- is_list(File), !, must_det_ll_r((maplist(with_wild_path(Fnicate), File))). +with_wild_path(Fnicate, File) :- must_det_ll_r((call(Fnicate, File))). + +path_chars(A,C):- symbol_chars(A,C). + +with_wild_path_swi(Fnicate, File) :- + compound(File), + absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(directory)]), + '\\=@='(Dir, File), !, + with_wild_path(Fnicate, Dir). +with_wild_path_swi(Fnicate, File) :- + compound(File), !, + absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(['csv', 'tsv', ''])]), + '\\=@='(Dir, File), !, + with_wild_path(Fnicate, Dir). +with_wild_path_swi(Fnicate, File) :- + symbol_contains(File, '*'), + expand_file_name(File, List), !, + maplist(with_wild_path(Fnicate), List). +with_wild_path_swi(Fnicate, File) :- + exists_directory(File), + directory_file_path(File, '*.*sv', Wildcard), + expand_file_name(Wildcard, List), !, + maplist(Fnicate, List). + + +:- dynamic(fix_columns_nth/2). +needs_fixed(X,Y):- (var(X)->fb_arg(X);true),fix_concept(X,L),(L\=@=[X],L\=@=X),(L=[Y]->true;Y=L). +mine_args_that_need_reduced:- + writeln('\n\n\n=====\n\n\n'), + forall(needs_fixed(X,Y),(pp_as(needs_fixed(X->Y)),fix_columns_with_arg(X))), + listing(fix_columns_nth). + +fix_columns_with_arg(Arg):- + forall(fb_arg_table_n(Arg,Fn,N), + fix_columns_n(Fn,N)). +fix_columns_n(Fn,N):- + assert_new(fix_columns_nth(Fn,N)). + + +load_fb_mask(Filename):- is_scryer,symbol(Filename),name(Filename,Chars),!,load_fb_mask(Chars). +load_fb_mask(Filename):- expand_file_name(Filename,Files1),maplist(load_fb_cache,Files1). +load_fb_cache(File):- with_wild_path(load_fb_cache0,File). +load_fb_cache0(File):- file_name_extension(Name,_E,File), + symbolic_list_concat([Pub,Table],'.',Name), + symbolic_list_concat([Pub,Table,qlf],'.',OutputFile),!, + load_fb_cache(File,OutputFile,Table). +load_fb_cache0(File):- file_name_extension(Name,_E,File), + symbolic_list_concat([Table],'.',Name), + symbolic_list_concat([Table,qlf],'.',OutputFile), + load_fb_cache(File,OutputFile,Table). + +% ============================================================================ +% LOAD FB Files +% ============================================================================ +track_load_into_file(RelFilename,Goal):- + absolute_file_name(RelFilename,Filename), + must_det_ll(( + start_html_of(Filename), + fbug(track_load_into_file(Filename)), + flag(loaded_from_file_count,Was,0), + with_option(loading_file,Filename,time(Goal)),!, + flag(loaded_from_file_count,New,Was), + ((New>0 ; \+ is_loaded_from_file_count(Filename,_))->assert(is_loaded_from_file_count(Filename,New));true), + fbug(Filename=New), + save_html_of(Filename))). + +:- dynamic(is_loaded_from_file_count/2). + +:- use_module(library(http/json)). +:- ensure_loaded(flybase_json). +load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), + current_predicate(load_flybase_json/2),load_flybase_json(Fn,File). +load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), + setup_call_cleanup(open(File,read,In,[encoding(utf8)]), json:json_read(In,Term,[]), close(In)), + time(assert(saved_fb_json(File,Term,Fn))). + + +load_fb_fa(Fn,Filename):- + track_load_into_file(Filename, + must_det_ll(( + fbug(load_fb_fa(Fn,Filename)), + directory_file_path(Directory, BaseName, Filename), + file_name_extension(Id, _, BaseName), + Type = 'SequenceFile', + assert_MeTTa(id_type(Id,Type)), + assert_MeTTa(pathname(Id,Filename)),!, + assert_MeTTa(basename(Id,BaseName)),!, + assert_MeTTa(directory(Id,Directory)),!, + setup_call_cleanup(open(Filename,read,In), load_fb_fa_read(Id,In,_), close(In))))). +load_fb_fa_read(_Fn,In, _):- (at_end_of_stream(In);reached_file_max),!. +load_fb_fa_read(Fn,In,FBTe):- read_line_to_chars(In,Chars), load_fb_fa_read_n(Fn,In,FBTe,Chars). +load_fb_fa_read_n(Fn,In,_,['>'|Chars]):- !, must_det_ll((path_chars(FBTe,Chars), load_fb_fa_read(Fn,In,seq(FBTe,1)))). +load_fb_fa_read_n(Fn,In,seq(FBTe,N),Chars):- + Data =..[Fn,FBTe,N|Chars], + assert_MeTTa(Data),!, + N2 is N+1,load_fb_fa_read(Fn,In,seq(FBTe,N2)). + +maybe_sample(_Fn,_Args):- \+ should_sample,!. +maybe_sample( Fn, Args):- assert_arg_samples(Fn,1,Args). + +:- dynamic(fb_arg/1). +:- dynamic(fb_arg_table_n/3). +assert_arg_table_n(A,Fn,N):- assert_new(fb_arg(A)), assert_new(fb_arg_table_n(A,Fn,N)). + +assert_arg_samples(Fn,N,[A|Args]):- + (dont_sample(A)->true;assert_arg_table_n(A,Fn,N)), + N2 is N+1, assert_arg_samples(Fn,N2,Args). +assert_arg_samples(_,_,_). + +dont_sample(N):- \+ symbol(N). dont_sample(''). dont_sample('-'). + +data_pred0(X,Y):- symbolic_list_concat(List,'/',X),List\==[],List\=[_],!,last(List,L),data_pred0(L,Y). +data_pred0(X,Y):- symbol_concat(YY,'.tsv',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'.fb',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'_',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'_fb',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat('public.',YY,X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'.',X),L=[_,_|_],symbolic_list_concat(L,'_',XL),!,data_pred0(XL,Y). +%data_pred0(X,Y):- symbolic_list_concat([L,_|_],'_fb_2',X),!,data_pred0(L,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_0',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_1',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_2',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_3',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_4',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_5',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_6',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_7',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_8',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_9',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb__',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +%data_pred0(X,Y):- symbolic_list_concat(List,'_',X),once(not_trimmed_path(List,NewList)), +% NewList\==[],NewList\==List,symbolic_list_concat(NewList,'_',Y),!. +data_pred0(X,X). + +data_pred(X,Y):- data_pred0(X,Y), Y\=='',!. +data_pred(X,X). + + +%file_to_sep(_File,9). +file_to_sep(csv,','). +file_to_sep(tsv,'\t'). +file_to_sep(metta_x,'\t'). +file_to_sep(File,Sep):- file_name_extension(_,Ext,File),clause(file_to_sep(Ext,Sep),true),!. +file_to_sep(_,'\t'). + +is_swipl:- \+ is_scryer. + +:- if(is_scryer). +read_line_to_chars(S,L):- is_scryer,!,get_line_to_chars(S,L,[]). +:- endif. +read_line_to_chars(S,L):- read_line_to_string(S,Str),string_chars(Str,L). + + +% Assert a given term if no variant of it already exists in the database. +% Usage: fb_assert(+Term). +fb_assert(Term) :- + % Check if Term is a rule (Head :- Body) or a fact (just Head). + ( Term = (Head :- Body) + -> copy_term(Body, CopiedBody) + ; (Head = Term, CopiedBody = true) + ), + % Copy the Head to generate a new term with fresh variables. + copy_term(Head, CopiedHead), + % If no variant of CopiedHead exists in the database with the same body, + % assert Term; otherwise, succeed without asserting Term. + ( \+ (clause(CopiedHead, CopiedBody), variant(CopiedHead, Head)) + -> assertz(Term) + ; true + ). + +:- dynamic(done_reading/1). + +use_metta_x:- fail. + +load_fb_cache(_File,OutputFile,_Fn):- exists_file(OutputFile),!,ensure_loaded(OutputFile),!. +load_fb_cache(File,_OutputFile,_Fn):- load_files([File],[qcompile(large)]). + + +'load_flybase_tiny':- load_flybase(20_000). +'load_flybase_full':- load_flybase(1_000_000_000_000_000_000_000_000_000_000_000_000_000_000_000). +'save_flybase_full':- load_flybase_full,qsave_program. + +load_flybase(N):- (number(N)->true;N==inf),!, + with_option([max_per_file=N], + (option_value(max_per_file,Max),write(max_per_file=Max),load_flybase)). +load_flybase(File):- file_name_extension(_,Ext,File),!, load_flybase(File,Ext). + +:- export(load_flybase/1). +:- system:import(load_flybase/1). + +load_flybase(File,Ext):- + with_wild_path(load_flybase0(Ext),File),!. + +load_flybase0(Ext,_File):- Ext=='pl',!. +load_flybase0(Ext,File):- + must_det_ll((file_name_extension(Name,_,File), + data_pred(Name,Fn),load_flybase(Ext,File,Fn))). + +:- dynamic(load_state/2). +%load_flybase(_Ext,_File,OutputFile,_Fn):- exists_file(OutputFile),size_file(OutputFile,N),N>100,!. +load_flybase(_Ext,File,_Fn):- load_state(File,_),!. +load_flybase(Ext,File,Fn):- + must_det_ll(( + assert(load_state(File,loading)), + fbug(load_flybase(Ext,File,Fn)), + load_flybase_ext(Ext,File,Fn), + ignore(retract(load_state(File,loading))), + assert(load_state(File,loaded)),fb_stats)). + +load_flybase_ext(_Ext,File,_Fn):- use_metta_x, atom_concat(File,'.metta_x',MFile), + exists_file(MFile), \+ is_converting, % Ext \== 'obo', + \+ option_value(metta_x_files,false),!, + process_metta_x_file(MFile). +load_flybase_ext(_Ext,File,_Fn):- fail, atom_concat(File,'.metta',MFile), + exists_file(MFile), \+ is_converting, % Ext \== 'obo', + \+ option_value(mettafiles,false),!, + load_flybase_metta(MFile). +load_flybase_ext(Ext,File,_Fn):- Ext==obo,current_predicate(load_obo/1),!,load_obo(File). +load_flybase_ext(Ext,File, Fn):- Ext==json,!,load_fb_json(Fn,File),!. +load_flybase_ext(Ext,File, Fn):- Ext==fa,!,load_fb_fa(Fn,File),!. +load_flybase_ext(Ext,File,_Fn):- Ext==metta,current_predicate(load_metta/2),!,load_flybase_metta(File). +load_flybase_ext(Ext,File, Fn):- file_to_sep(Ext,Sep),!, + track_load_into_file(File, +setup_call_cleanup(open(File,read,Stream), load_flybase_sv(Sep,File,Stream,Fn), close(Stream))),!. +load_flybase_ext(Ext,File, Fn):- fbug(missed_loading_flybase(Ext,File,Fn)),!. + +%load_flybase_metta(File):- !, load_metta('&flybase',File). +load_flybase_metta(File):- + with_option('trace-on-load',false, + load_metta('&flybase',File)). + + +fix_list_args(_,_,Y,Y):- option_value(early_canon,[]), \+ should_sample,!. +%fix_list_args(_Fn,_ArgTypes,[X],[X]):- !. +fix_list_args(Fn,ArgTypes,Args,NewArgs):- + must_det_ll_r(( + primary_term(Fn,ArgTypes,Args,Term,NewArgTypes), + fix_elist_args(Term,Fn,1,NewArgTypes,Args,NewArgs), + extreme_debug(ignore(((Args \== NewArgs,fbug(NewArgs))))))). +fix_list_args(_Fn,_ArgTypes,Args,Args):-!. + +primary_term(_Fn,[N|ArgTypes],_Args,_Term,ArgTypes):- number(N),!. +primary_term(_Fn,[N|ArgTypes],Args,Term,ArgTypes):- number(N),!,nth1(N,Args,Term). +primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes):-!. +primary_term(_Fn,ArgTypes,Args,Term,NewArgTypes):- + append(L,[primary(Name)|R],ArgTypes), + append(L,[Name|R],NewArgTypes), + length(L,N),nth0(N,Args,Term). +primary_term( Fn,ArgTypes,Args,Term,ArgTypes):- + primary_column(Fn,Name), + nth1(N,ArgTypes,Name),!, + nth1(N,Args,Term),!. +primary_term(_Fn,ArgTypes,[Term|_],Term,ArgTypes):-!. +primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes). + +fix_elist_args(Term,Fn,N,[Nth|ArgTypes],Args,NewArgs):- number(Nth),!,fix_elist_args(Term,Fn,N,ArgTypes,Args,NewArgs). +fix_elist_args(Term,Fn,N,[Type|ArgTypes],[Concept|Args],[Arg|NewArgs]):- !, + must_det_ll((adjust_type(Term,Fn,N,Type,Concept,Arg), N2 is N +1, fix_elist_args(Term,Fn,N2,ArgTypes,Args,NewArgs))). +fix_elist_args(_Term,_Fn,_N,_,X,X). + +adjust_type(Term,Fn,N,listOf(Type),Arg,NewL):- must_det_ll((nonvar(Type),as_list([],Arg,New),is_list(New), + maplist(adjust_type(Term,Fn,N,Type),New,NewL))). +adjust_type(Term,Fn,N,listOf(Type,Seps),Arg,NewL):- must_det_ll((nonvar(Type),as_list(Seps,Arg,New),is_list(New), + maplist(adjust_type(Term,Fn,N,Type),New,NewL))). +adjust_type(Term,Fn,N,Type,Concept,Arg):- numeric_value_p_n(Fn,N,_),!, + must_det_ll(((into_number(Concept,Arg)->true;(Concept=Arg)),assert_type_of(Term,Fn,N,Type,Arg))). +adjust_type(Term,Fn,N,Type,Concept,Arg):- must_det_ll((fix_concept(Concept,Arg), assert_type_of(Term,Fn,N,Type,Arg))). +adjust_type(_Term,_Fn,_N,_,X,X). + +into_number(Concept,Arg):- number(Concept),!,Arg = Concept. +into_number(Concept,Arg):- symbol_number(Concept,Arg),!. +into_number(Concept,Arg):- Concept=Arg,!. + +:- dynamic(fb_arg/1). +:- dynamic(fb_arg_table_n/3). +assert_type_of(_Term,_Fn,_N,_Type,_Arg):- \+ should_sample,!. +assert_type_of(Term,Fn,N,Type,Arg):- is_list(Arg),!,maplist(assert_type_of(Term,Fn,N,Type),Arg). +assert_type_of(_Term,Fn,N,_Type,Arg):- + must_det_ll_r(( + assert_new(fb_arg(Arg)), + assert_new(fb_arg_table_n(Arg,Fn,N)))). + +:- dynamic(fb_arg_type/1). +:- dynamic(table_n_type/3). +add_table_n_types(_Fn,_,ArgTypes):- \+ is_list(ArgTypes),!. +add_table_n_types(Fn,1,[N|ArgTypes]):- number(N),!, + add_table_n_types(Fn,1,ArgTypes). +add_table_n_types(Fn,N,[Type|ArgTypes]):-!, + sub_term(Sub,Type),symbol(Sub),!, + assert_new(fb_arg_type(Sub)), + assert_new(table_n_type(Fn,N,Sub)), + N2 is N+1, add_table_n_types(Fn,N2,ArgTypes),!. +add_table_n_types(_Fn,_,[]). + +is_concept(Arg):- fb_arg(Arg). +is_concept_type(Type):- fb_arg_type(Type). + +arg_table_n_type(Arg,Fn,N,Type):- table_n_type(Fn,N,Type),once((fb_pred(Fn,A),functor(G,Fn,A), arg(N,G,Arg),call(G), + \+ is_list(Arg), \+ as_list(Arg,[]))). + +is_valuesymbol(Fn,N,Type):- arg_table_n_type(Arg,Fn,N,Type),symbol_number(Arg,_). + +:- dynamic(numeric_value_p_n/3). +fis_valuesymbol(PNList,Len):- findall(P-N,is_valuesymbol(P,N,_Type),PNList),length(PNList,Len). + +save_value_symbol_cols:- for_all(is_valuesymbol(Fn,N,Type),assert_new(numeric_value_p_n(Fn,N,Type))), + listing(numeric_value_p_n/3). + + +/* +load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn):- + flag(loaded_from_file_count,_,0), + ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), + fix_header_names(Fn,Header,ArgTypes), + for_all((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), + for_all((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), + if_t(is_list(ArgTypes),set_option_value(fb_argtypes,ArgTypes)), + time((repeat, + read_line_to_chars(Stream, Chars), + once(load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn)), + once(done_reading(File);reached_file_max;at_end_of_stream(Stream)),!, + once(end_fb_file_data(File,Stream,Fn,OutputStream)), + loaded_from_file_count(X),!, + fb_stats(Fn), + pl_stats(File,X))). + +write_flybase_data(_OutputStream,_Fn,[]):-!. +write_flybase_data(_OutputStream,_Fn,['']):-!. +write_flybase_data(_OutputStream,Fn,DataL):- assert_MeTTa(Fn,DataL). + +FBgn: FlyBase gene number - Represents a gene. +FBal: FlyBase allele number - Represents an allele. +FBst: FlyBase stock number - Represents a stock. +FBtp: FlyBase transposon number - Represents a transposon. +FBab: FlyBase aberration number - Represents a chromosomal aberration. +FBba: FlyBase balancer number - Represents a balancer. +FBcl: FlyBase clone number - Represents a DNA or RNA clone. +FBim: FlyBase image number - Represents an image. +FBpp: FlyBase polypeptide number - Represents a protein. +FBtr: FlyBase transcript number - Represents a transcript. +FBte: FlyBase transgenic element number - Represents a transgenic element. +*/ + +write_flybase_data(_ArgTypes,_Fn,[]):-!. +write_flybase_data(_ArgTypes,_Fn,['']):-!. +write_flybase_data(_ArgTypes,_Fn,[_]):-!. +write_flybase_data(_ArgTypes,Fn,DataL0):- + maplist(fast_column,DataL0,DataL), !, Data=..[Fn|DataL], assert_MeTTa(Data). +%write_flybase_data(_ArgTypes,Fn,DataL):- into_datum(Fn,DataL,Data), assert_MeTTa(Data). + + +/* + +assert_MeTTa(Data):- Data=..[Fn|DataL],assert_MeTTa(Fn,DataL),!. + +assert_MeTTa(Fn,DataL0):- + make_assertion(Fn,DataL0,Data,OldData), + ignore(( + heartbeat, + functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + flag(loaded_from_file_count,X,X+1), + flag(total_loaded_symbols,TA,TA+1), + assert(Data), + ignore((((has_list(_ArgTypes)->(X<23,X>20); (X<13,X>10)); (X>0,(0 is X rem 1_000_000),fb_stats)),nl,nl,fbug(X=Data),ignore((OldData\==DataL0,fbug(oldData=OldData))))), + ignore((fail,catch_ignore(ignore((X<1000,must_det_ll_r((write_canonical(OutputStream,Data),writeln(OutputStream,'.')))))))))),!. + */ + +make_assertion(Fn, Cols, NewData, OldData):- !, make_assertion4(Fn, Cols, NewData, OldData). + +make_assertion(Fn,DataL0,Data,DataL0):- + must_det_ll_r(( + into_datum(Fn,DataL0,Data0), + Data0=..[F|Args], + Args=DataL, + Data=..[F|DataL])). + +make_assertion(ArgTypes,Fn,DataL0,Data,DataL0):- + must_det_ll_r(( + into_datum(Fn,DataL0,Data0), + Data0=..[F|Args], + skip(if_t(var(ArgTypes),must_det_ll_r((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), + fix_list_args(Fn,ArgTypes,Args,DataL), + Data=..[F|DataL])). + + +% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 +%reprefix(['GO_','GO--','FBgn','BiologicalProcess:GO:'],'GO:'). +reprefix(['GO_','GO--','BiologicalProcess:GO:'],'GO:'). +reprefix(['flybase:','FLYBASE:','comment:'],''). +reprefix(['FBpp:'],'FBpp'). +reprefix(['FBgn:'],'FBgn'). +reprefix(['FB:FB'],'FB'). +%./KBs/SUMO-OBO/gene-merged-SUMO.kif +%# +%FBbt_00051628= + +as_list(A,New):- is_list(A),!,A=New. +as_list(N,[N]):- \+ symbol(N), \+ string(N),!. +%as_list(A,New):- var(A),!,New = [A]. +as_list('-',[]). as_list("-",[]). as_list('',[]). +as_list("",[]). as_list(' ',[]). as_list(" ",[]). +%as_list(N,[N]):- !. +as_list(_,S,O):- as_list(S,O),!. +as_list(SepL,A,List):- member(Sep,SepL),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!. +%as_list(_,A,ListO):- member(Sep,['|',',',';']),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!,maplist(fix_concept,List,ListO). +as_list(_Sep,A,[A]). +has_list(Header):- is_list(Header),member(listOf(_),Header). + +% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 + +% ======================================= +% Fix Concept1 +% ======================================= + +fix_concept1(A,L):- as_list(['|'],A,L),(L\=@=[A],A\=@=L). +fix_concept1(A,N):- symbol_number(A,N),!. +%fix_concept1(A,AO):- reprefix(List,To),member(E,List),symbol_concat(E,AM,A),symbol_concat(To,AM,AO). +%fix_concept1(A,AO):- symbol_concat('FB',_,A),symbolic_list_concat([Type,Number],':',A),!,symbol_concat(Type,Number,AO). +fix_concept1(A,AO):- symbol_concat('"',Mid,A),symbol_concat(AS,'"',Mid),symbol_string(AS,AO). +fix_concept1(A,AO):- symbol_concat(AO,'(gene name)',A),AO\==''. + +fix_concept1(A,N):- symbol(A),!,N=A. +%fix_concept(S,A):- number_string(A,S),!. + + +% ======================================= +% Fix Concept +% ======================================= + +fix_concept(A,New):- is_list(A),!,maplist(fix_concept,A,L),!,New=L. +fix_concept(A,New):- \+ symbol(A), !,New=A. +fix_concept(S,O):- once(fix_concept1(S,M)),S\=@=M,!,fix_concept(M,O). +fix_concept(A,New):- =(A,New),!. + + +fix_columns_nth('genome-cyto-seq', 1). +fix_columns_nth('genome-cyto-seq', 2). +fix_columns_nth('genome-cyto-seq', 3). +fix_columns_nth(allele_genetic_interactions, 3). +fix_columns_nth(dmel_human_orthologs_disease, 6). +fix_columns_nth(dmel_human_orthologs_disease, 7). +fix_columns_nth(dmel_paralogs, 10). +fix_columns_nth(dmel_paralogs, 11). +fix_columns_nth(dmel_paralogs, 5). +fix_columns_nth(dmel_paralogs, 8). +fix_columns_nth(entity_publication, 4). +fix_columns_nth(fbgn_NAseq_Uniprot, 7). +fix_columns_nth(fbrf_pmid_pmcid_doi, 2). +fix_columns_nth(gene_genetic_interactions, 1). +fix_columns_nth(gene_genetic_interactions, 2). +fix_columns_nth(gene_genetic_interactions, 3). +fix_columns_nth(gene_genetic_interactions, 4). +fix_columns_nth(gene_groups_HGNC, 4). +fix_columns_nth(gene_rpkm_matrix, _). +fix_columns_nth(gene_rpkm_report, 10). +fix_columns_nth(gene_rpkm_report, 11). +fix_columns_nth(gene_rpkm_report, 8). +fix_columns_nth(gene_rpkm_report, 9). +fix_columns_nth(gene_snapshots, 4). +fix_columns_nth(genotype_phenotype, 5). +fix_columns_nth(genotype_phenotype, 6). +fix_columns_nth(gp_information, 9). +fix_columns_nth(insertion_mapping, 5). +fix_columns_nth(insertion_mapping, 6). +fix_columns_nth(physical_interactions_mitab, _). +fix_columns_nth(pmid_fbgn_uniprot, 2). +fix_columns_nth(stocks, 7). +fix_columns_nth(synonym, 5). +fix_columns_nth(synonym, 6). +fix_columns_nth(transposon_sequence_set, 4). +fix_columns_nth(transposon_sequence_set, 5). +fix_columns_nth(transposon_sequence_set, 8). + + + +:- discontiguous column_description/4. +:- discontiguous primary_column/2. +:- discontiguous column_names/2. +:- discontiguous file_location/2. + + + +% 466_896_429 +% Descriptions for allele_genetic_interactions columns +% Descriptions for genotype_phenotype_data columns +% For the file allele_genetic_interactions_*.tsv +% For the file genotype_phenotype_data_*.tsv + + + +load_flybase(Sep,File,Stream,Fn):- + must_det_ll_r(( + %ignore(swi_only(format(":- ~q.\n",[encoding(utf8)]))), + symbolic_list_concat([data,Fn],'_',Fn0), + data_pred(Fn0,Fn), + load_flybase_sv(Sep,File,Stream,Fn))). + +% Sep,File,Stream,OutputStream,Fn +load_flybase_sv(Sep,File,Stream,Fn):- at_end_of_stream(Stream),!, + once(load_fb_data(_ArgTypes,File,Stream,Fn,Sep,end_of_file)). + +load_flybase_sv(Sep,File,Stream,Fn):- + must_det_ll_r(( + flag(loaded_from_file_count,_,0), + ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), + fix_header_names(Fn,Header,ArgTypes), + forall((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), + forall((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), + ((primary_column(Fn,Name),nth1(N,ArgTypes,Name))->NArgTypes=[N|ArgTypes];NArgTypes=[1|ArgTypes]), + if_t(is_list(ArgTypes),add_table_n_types(Fn,1,ArgTypes)), + ground(NArgTypes), + if_t(is_list(ArgTypes),ignore((length(ArgTypes,A),decl_fb_pred(Fn,A)))), + time((repeat, + read_line_to_chars(Stream, Chars), + once(load_flybase_chars(NArgTypes,File,Stream,Fn,Sep,Chars)), + once(reached_file_max;done_reading(File);at_end_of_stream(Stream)),!, + once(load_fb_data(NArgTypes,File,Stream,Fn,Sep,end_of_file)))), + loaded_from_file_count(X),!, + metta_stats(Fn), + pl_stats(File,X))). + + +%save_conversion_data(ArgTypes,Fn,OutputStream,Data):- maplist(write_flybase_data(ArgTypes,ArgTypes,Fn,OutputStream),Data). + +is_really_header_row([H|_],_Names):- symbol_concat('',_,H),!. + +process_metta_x_file(MXFile):- + data_pred(MXFile,Fn), + setup_call_cleanup(open(MXFile,read,In,[encoding(utf8)]), + ((repeat, + read_line_to_string(In,Chars), + (In == end_of_file -> ! ; + once((atomic_list_concat(Row0,'\t', Chars), + maplist(fast_column,Row0,Row), + assert_MeTTa([Fn|Row])))))), + close(In)). + +fast_column(X,X):- !. +fast_column(X,Y):- into_fb_term(X,Y),!. +fast_column(X,X). + +%read_csv_stream(Sep,CharsStream,Header):- read_string(CharsStream, "\n", "\r\t ",_,) +read_csv_stream(Sep,CharsStream,Header):- % \+ option_value(full_canon,[]),!, + read_line_to_string(CharsStream,Chars), + (Chars == end_of_file -> Header= Chars ; symbolic_list_concat(Header, Sep, Chars)). +read_csv_stream(Sep,CharsStream,Header):- \+ option_value(full_canon,[]),!, read_line_to_string(CharsStream,Chars), + (Chars == end_of_file -> Header= Chars ; split_string(Chars, Sep, "\s\t\n", Header)). +read_csv_stream(Sep,CharsStream,Header):- + name(Sep,[SepCode]), + csv_options(CompiledHeaderOptions,[separator(SepCode)]), + csv_read_row(CharsStream, HeaderRow, CompiledHeaderOptions), + HeaderRow=..[_|Header],!. + +read_csv(Sep,Chars,Header):- \+ option_value(full_canon,[]),!, split_string(Chars, Sep, "\s\t\n", Header). +read_csv(Sep,Chars,Header):- + open_string(Chars,CharsStream),read_csv_stream(Sep,CharsStream,Header). + + +attempt_header_row(Sep,Chars,Fn,Header,ArgTypes):- + read_csv(Sep,Chars,Header), + fix_header_names(Fn,Header,ArgTypes),!. + +:- dynamic(t_h_n/3). + +load_flybase_chars(ArgTypes,File,_Stream,_Fn,Sep,Chars):- + ( \+ member(Sep,Chars); (['#','#',' '|_]=Chars) ; (ground(ArgTypes),['#'|_]=Chars)), + %writeln(comment(Sep)=Chars),!, + (format("~n ; ~s",[Chars])), + ignore((loaded_from_file_count(X),X>2000,!,assert(done_reading(File)))). + +load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- + var(ArgTypes),member(Sep,Chars),['#'|_]=Chars, + (format("~n ; Maybe Header: ~s",[Chars])), + attempt_header_row(Sep,Chars,Fn,Header,ArgTypes), + is_really_header_row(Header,ArgTypes), + (fbug(t_h_n(Fn,Header,ArgTypes)),fb_assert(t_h_n(Fn,Header,ArgTypes))),!, + load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). + +load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- is_swipl, + attempt_header_row(Sep,Chars,Fn,Header,_), + write_flybase_data([N|ArgTypes],Fn,Header),!, + load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). + + +load_fb_data(_ArgTypes,File,_Stream,_Fn,_Sep,Data):- + (Data == end_of_file;done_reading(File)),!. + +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- % \+ option_value(full_canon,[]), !, + (option_value(max_per_file,Max)->true;Max=inf), + fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), + add_table_n_types(Fn,1,ArgTypes),!,% trace, + repeat, + once(read_csv_stream(Sep,Stream,Data)), + loaded_from_file_count(X), + (((Data== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; + (once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. + +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- !, + name(Sep,[SepCode]), + csv_options(CompiledOptions,[separator(SepCode)]), + (option_value(max_per_file,Max)->true;Max=inf), + fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), + add_table_n_types(Fn,1,ArgTypes),!, + repeat, + once((csv_read_row(Stream, RData, CompiledOptions))), + loaded_from_file_count(X), + (((RData== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; + (RData =..[_|Data], + once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. + +% recursion depth 16 million rows +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- + name(Sep,[SepCode]), + csv_options(CompiledOptions,[strip(true),convert(true),separator(SepCode)]), + (option_value(max_per_file,Max)->true;Max=inf), + once((csv_read_row(Stream, RData, CompiledOptions))), + loaded_from_file_count(X), + (((RData== end_of_file);(X>Max)) -> assert(done_reading(File)) ; + (RData =..[_|Data], once(write_flybase_data(ArgTypes,Fn,Data)), + load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl))),!. + + + +column_description('allele_FBal#', "Current FlyBase identifier (FBal#) of allele.", identifier, 'Allele Identifier'). +column_description('allele_symbol', "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). +column_description('Bin_value', "The expression bin classification of this gene in this RNA-Seq experiment, based on RPKM value.", numeric, 'Expression Bin'). +column_description('Cluster_Cell_Type_ID', "The FlyBase FBbt ID for the cell type represented by the cell cluster.", identifier, 'Cell Type'). +column_description('Cluster_Cell_Type_Name', "The FlyBase name for the cell type represented by the cell cluster.", name, 'Cell Type Name'). +column_description('Cluster_ID', "The FlyBase FBlc ID for the dataset representing the cell cluster.", identifier, 'Cell Cluster'). +column_description('Cluster_Name', "The FlyBase name for the dataset representing the cell cluster.", name, 'Cell Cluster Name'). +column_description('Clustering_Analysis_ID', "The FlyBase FBlc ID for the dataset representing the clustering analysis.", identifier, 'Dataset'). +column_description('Clustering_Analysis_Name', "The FlyBase name for the dataset representing the clustering analysis.", name, 'Dataset Name'). +column_description('Count_used', "Indicates if the RPKM expression value was calculated using only the exonic regions unique to the gene and not overlapping exons of other genes (Unique), or, if the RPKM expression value was calculated based on all exons of the gene regardless of overlap with other genes (Total).", category, 'Count Type'). +column_description('DATASAMPLE_NAME_(DATASET_ID)', "Each subsequent column reports the gene RPKM values for the sample listed in the header.", matrix, 'Expression Matrix'). +column_description('FBgn', "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). +column_description('FBgn_id', "Unique FlyBase gene ID.", identifier, 'Gene'). +column_description('FBrf#', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('FBrf', "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('FBrf_id', "FlyBase reference ID for the publication.", identifier, 'Reference'). +column_description('Gene_ID', "The FlyBase FBgn ID for the expressed gene.", identifier, 'Gene'). +column_description('Gene_Symbol', "The FlyBase symbol for the expressed gene.", symbol, 'Gene Symbol'). +column_description('GeneSymbol', "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). +column_description('interaction', "Interaction information associated with allele.", text, 'Interaction Info'). +column_description('Interaction_type', "Type of interaction observed, either 'suppressible' or 'enhanceable'.", category, 'Interaction Type'). +column_description('Mean_Expression', "The average level of expression of the gene across all cells of the cluster.", numeric, 'Expression Level'). +column_description('Parent_library_FBlc', "The unique FlyBase ID for the dataset project to which the RNA-Seq experiment belongs.", identifier, 'Dataset Project'). +column_description('Parent_library_name', "The official FlyBase symbol for the dataset project to which the RNA-Seq experiment belongs.", name, 'Dataset Project Name'). +column_description('phenotype_id', "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). +column_description('phenotype_name', "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). +column_description('PMID', "PubMed ID for the publication.", identifier, 'Publication'). +column_description('Pub_ID', "The FlyBase FBrf ID for the reference in which the expression was reported.", identifier, 'Publication'). +column_description('Pub_miniref', "The FlyBase citation for the publication in which the expression was reported.", citation, 'Publication Citation'). +column_description('Publication_FBrf', "Current FlyBase identifier (FBrf) of publication from which the data came.", identifier, 'Publication Reference'). +column_description('reference', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('Release_ID', "The D. melanogaster annotation set version from which the gene model used in the analysis derives.", version, 'Annotation Version'). +column_description('RNASource_FBlc', "The unique FlyBase ID for the RNA-Seq experiment used for RPKM expression calculation.", identifier, 'RNA-Seq Experiment'). +column_description('RNASource_name', "The official FlyBase symbol for the RNA-Seq experiment used for RPKM expression calculation.", name, 'RNA-Seq Experiment Name'). +column_description('RPKM_value', "The RPKM expression value for the gene in the specified RNA-Seq experiment.", numeric, 'Expression Value'). +column_description('Source_Tissue_Anatomy', "The ansymbolical region of the source tissue used for the experiment.", category, 'Tissue Anatomy'). +column_description('Source_Tissue_Sex', "The sex of the source tissue used for the experiment.", category, 'Tissue Sex'). +column_description('Source_Tissue_Stage', "The life stage of the source tissue used for the experiment.", category, 'Tissue Stage'). +column_description('Spread', "The proportion of cells in the cluster in which the gene is detected.", proportion, 'Expression Spread'). +column_description('Total_exon_base_count', "The number of bases in all exons of this gene.", numeric, 'Total Exonic Base Count'). +column_description('UniProt_database', "Database in UniProt where the protein is listed (either UniProt/TrEMBL or UniProt/Swiss-Prot).", category, 'Protein Database'). +column_description('UniProt_id', "Unique identifier for the protein in UniProt.", identifier, 'Protein'). +column_description('Unique_exon_base_count', "The number of exonic bases unique to the gene (not overlapping exons of other genes).", numeric, 'Exonic Base Count'). +column_description(allele_FBal, "Current FlyBase identifier (FBal) of allele.", identifier, 'Allele Identifier'). +column_description(allele_symbol, "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). +column_description(current_fullname, "Current full name used in FlyBase for the object.", name, 'Name'). +column_description(current_symbol, "Current symbol used in FlyBase for the object.", symbol, 'Symbol'). +column_description(gene_fullname, "The official full name for this gene.", name, 'Gene Name'). +column_description(gene_primary_id, "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). +column_description(gene_symbol, "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). +column_description(gene_type, "The type of gene.", category, 'Gene Type'). +column_description(interaction, "Interaction information associated with allele.", text, 'Interaction Info'). +column_description(listOf('genotype_FBids', ['/', ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). +column_description(listOf('genotype_symbols', ['/', ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). +column_description(listOf('Interacting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the interacting genotype.", list, 'Gene Identifier'). +column_description(listOf('Interacting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the interacting genotype.", list, 'Gene Symbol'). +column_description(listOf('qualifier_ids', ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). +column_description(listOf('qualifier_names', ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). +column_description(listOf('Starting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the starting genotype.", list, 'Gene Identifier'). +column_description(listOf('Starting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the starting genotype.", list, 'Gene Symbol'). +column_description(listOf(fullname_synonym, ['|']), "Non-current full name(s) associated with the object.", list, 'Name Synonyms'). +column_description(listOf(genotype_FBids, [/, ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). +column_description(listOf(genotype_symbols, [/, ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). +column_description(listOf(qualifier_ids, ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). +column_description(listOf(qualifier_names, ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). +column_description(listOf(symbol_synonym, ['|']), "Non-current symbol(s) associated with the object.", list, 'Symbol Synonyms'). +column_description(organism_abbreviation, "Abbreviation indicating the species of origin.", abbreviation, 'Organism'). +column_description(phenotype_id, "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). +column_description(phenotype_name, "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). +column_description(primary_FBid, "Primary FlyBase identifier for the object.", identifier, 'Object'). +column_description(reference, "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). + +column_names('allele_genetic_interactions', ['allele_symbol', 'allele_FBal#', 'interaction', 'FBrf#']). +column_names('fb_synonym', ['primary_FBid', 'organism_abbreviation', 'current_symbol', 'current_fullname', listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names('gene_genetic_interactions', [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names('gene_rpkm_matrix', ['gene_primary_id', 'gene_symbol', 'gene_fullname', 'gene_type', 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names('gene_rpkm_report', ['Release_ID', 'FBgn#', 'GeneSymbol', 'Parent_library_FBlc#', 'Parent_library_name', 'RNASource_FBlc#', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names('genotype_phenotype_data', [listOf('genotype_symbols', ['/', ' ']), listOf('genotype_FBids', ['/', ' ']), 'phenotype_name', 'phenotype_id', listOf('qualifier_names', ['|']), listOf('qualifier_ids', ['|']), 'reference']). +column_names('pmid_fbgn_uniprot', ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). + +file_location('allele_genetic_interactions', "path_to_file/allele_genetic_interactions_*.tsv"). +file_location('genotype_phenotype_data', "path_to_file/genotype_phenotype_data_*.tsv"). + +primary_column('allele_genetic_interactions', 'allele_FBal#'). +primary_column('fb_synonym', 'primary_FBid'). +primary_column('gene_genetic_interactions', 'Starting_gene_FBgn'). +primary_column('gene_rpkm_matrix', 'gene_primary_id'). +primary_column('gene_rpkm_report', 'FBgn#'). +primary_column('genotype_phenotype_data', 'genotype_FBids'). +primary_column('pmid_fbgn_uniprot', 'FBgn_id'). +primary_column('scRNA-Seq_gene_expression', 'Gene_ID'). +primary_column(allele_genetic_interactions, allele_FBal). +primary_column(dataset_metadata, 'Item_ID'). +primary_column(dmel_paralogs, 'Paralog_FBgn'). +primary_column(fb_synonym, primary_FBid). +primary_column(fbgn_exons2affy1_overlaps, 'FBgn'). +primary_column(fbgn_exons2affy2_overlaps, 'FBgn'). +primary_column(gene_genetic_interactions, 'Starting_gene_FBgn'). +primary_column(gene_rpkm_matrix, gene_primary_id). +primary_column(gene_rpkm_report, 'FBgn'). +primary_column(genotype_phenotype_data, genotype_FBids). +primary_column(pmid_fbgn_uniprot, 'FBgn_id'). + +too_generic(Var):- var(Var),!,fail. +too_generic(pub_id). +too_generic(X):- \+ symbolic_list_concat([_,_,_|_],'_',X). + + +fix_header_names(Fn,Header,GNames):- + maplist(fix_header_names(Header,Fn),Header,ArgTypes), + include( \=(''),ArgTypes,GNames). + + +%fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_','_id','_ID']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(_FL,_Fn,ID,Out):- number(ID),!,Out=ID. +fix_header_names(FL,Fn,listOf(ID),listOf(Out)):- fix_header_names(FL,Fn,ID,Out),!. +fix_header_names(FL,Fn,listOf(ID,Sep),listOf(Out,Sep)):- fix_header_names(FL,Fn,ID,Out),!. +fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(RF,MID,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,Out):- member(RF,['__',' ']),symbolic_list_concat(MIDL,RF,ID),MIDL\=[_],symbolic_list_concat(MIDL,'_',MID),!, + fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RF,['(es)','(s)','ids']),symbolic_list_concat([Left,Right],RF,ID),symbolic_list_concat([Left,Right],'_',MID),!, + fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. +fix_header_names(FL,Fn,TT,listOf(AOut)):- + member(IDs=ID,['IDs'='ID']), + symbol_concat(Type,IDs,TT), + symbol_concat(Type,ID,MID), + fix_header_names(FL,Fn,MID,AOut),!. +fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RFS=RF,['_IDs'='_ID','IDs'='ID']), + symbolic_list_concat([Left,Right],RFS,ID), + symbolic_list_concat([Left,Right],RF,MID),!, + fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. + + +fix_header_names(_,_,Name,Name):- \+ too_generic(Name),!. +fix_header_names(_,_,Name,Name):- symbolic_list_concat([_,_|_],'_',Name),!. +%fix_header_names(_,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_column_',Out). +%fix_header_names(FieldList,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_',Out), \+ member(Out,FieldList). +fix_header_names(_,_,Name,Name). + + +pmt :-flybase_tables(FBT),for_all(member(T,FBT), ( '\\+'(flybase_cols(T,_)) -> format('~N~q.~n',[get_fbt(T)]);true)). +use_flybase_cols(Table,Columns):- + must_det_ll(( + maplist(fix_header_names(Columns,Table),Columns,ArgTypes), + assert(flybase_col_names(Table,Columns,ArgTypes)), + do_arity_2_names(Table,ArgTypes))). + +do_arity_2_names(Table,[ID|ArgTypes]):- + must_det_ll_r(( + symbol_concat('data_',Table,F), + length([ID|ArgTypes],Arity), + length(Args,Arity), + DataCall=..[F|Args], + do_arity_2_names_dc(Table,DataCall,2,ArgTypes))). + +do_arity_2_names_dc(Table,DataCall,N,[Nth|ArgTypes]):- + do_arity_2_names_dc1(Table,DataCall,N,Nth),!, + N2 is N+1, do_arity_2_names_dc(Table,DataCall,N2,ArgTypes). +do_arity_2_names_dc(_Table,_DataCall,_N,[]). + +do_arity_2_names_dc1(Table,DataCall,N,Nth):- + must_det_ll(( + arg(1,DataCall,Arg1Data), + arg(N,DataCall,Arg2Data), + make_arity_2_name(Table,Nth,Arity2), + Arg1=..[Table,Arg1Data], + clip_id(Nth,NthNoID), + (Nth==NthNoID -> Arg2=Arg2Data ; Arg2 =..[NthNoID,Arg2Data]), + Arity2Call=..[Arity2,Arg1,Arg2], + fbug((Arity2Call:-DataCall)), + fb_assert((Arity2Call:-DataCall)))). + +make_arity_2_name(Table,Nth,Arity2):- + clip_id(Nth,NthNoID), + (symbol_concat(Table,_,Nth) + -> Arity2 = Nth + ; symbolic_list_concat([Table,NthNoID],'_',Arity2)). + + +clip_id(Nth,ID):- (symbol_concat(ID,'_id',Nth)->true;Nth=ID),!. + + + + +setup_flybase_cols:- + for_all(flybase_cols(Table,Columns), + use_flybase_cols(Table,Columns)). + +%:- load_flybase("das_precomputed/allele_genetic_interactions_fb_2022_06.tsv"). + + + + +flybase_cols(allele_genetic_interactions,['##allele_symbol','allele_FBal#',interaction,'FBrf#']). + +flybase_cols(analysis,[ analysis_id,name,description,program,programversion,algorithm,sourcename,sourceversion,sourceuri,timeexecuted]). +flybase_cols(analysisfeature,[ analysisfeature_id,feature_id,analysis_id,rawscore,normscore,significance,identity]). +flybase_cols(analysisgrp,[ analysisgrp_id,rawscore,normscore,significance,identity,analysis_id,grp_id]). +flybase_cols(analysisgrpmember,[ analysisgrpmember_id,rawscore,normscore,significance,identity,analysis_id,grpmember_id]). +flybase_cols(analysisprop,[ analysisprop_id,analysis_id,type_id,value]). +flybase_cols(audit_chado,[ audit_transaction,transaction_timestamp,userid,audited_table,record_pkey,record_ukey_cols,record_ukey_vals,audited_cols,audited_vals]). + +flybase_cols(cell_line,[ cell_line_id,name,uniquename,organism_id,timeaccessioned,timelastmodified]). +flybase_cols(cell_line_loaderm,[ cell_line_loaderm_id,cell_line_id,loaderm_id,pub_id,rank]). +flybase_cols(cell_line_loadermprop,[ cell_line_loadermprop_id,cell_line_loaderm_id,type_id,value,rank]). +flybase_cols(cell_line_dbxref,[ cell_line_dbxref_id,cell_line_id,dbxref_id,is_current]). +flybase_cols(cell_line_feature,[ cell_line_feature_id,cell_line_id,feature_id,pub_id]). +flybase_cols(cell_line_library,[ cell_line_library_id,cell_line_id,library_id,pub_id]). +flybase_cols(cell_line_libraryprop,[ cell_line_libraryprop_id,cell_line_library_id,type_id,value,rank]). +flybase_cols(cell_line_relationship,[ cell_line_relationship_id,subject_id,object_id,type_id]). +flybase_cols(cell_line_strain,[ cell_line_strain_id,strain_id,cell_line_id,pub_id]). +flybase_cols(cell_line_strainprop,[ cell_line_strainprop_id,cell_line_strain_id,type_id,value,rank]). +flybase_cols(cell_line_synonym,[ cell_line_synonym_id,cell_line_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(cell_lineprop,[ cell_lineprop_id,cell_line_id,type_id,value,rank]). +flybase_cols(cell_lineprop_pub,[ cell_lineprop_pub_id,cell_lineprop_id,pub_id]). +flybase_cols(cell_line_pub,[ cell_line_pub_id,cell_line_id,pub_id]). +flybase_cols(contact,[ contact_id,description,name]). +flybase_cols(cv,[ cv_id,name,definition]). +flybase_cols(loaderm,[ loaderm_id,cv_id,definition,dbxref_id,is_obsolete,is_relationshiptype,name]). +flybase_cols(loaderm_dbxref,[ loaderm_dbxref_id,loaderm_id,dbxref_id,is_for_definition]). +flybase_cols(loaderm_relationship,[ loaderm_relationship_id,type_id,subject_id,object_id]). +flybase_cols(loadermpath,[ loadermpath_id,type_id,subject_id,object_id,cv_id,pathdistance]). +flybase_cols(loadermprop,[ loadermprop_id,loaderm_id,type_id,value,rank]). +flybase_cols(loadermsynonym,[ loadermsynonym_id,loaderm_id,name,type_id]). +flybase_cols(db,[ db_id,name,contact_id,description,urlprefix,url]). +flybase_cols(dbxref,[ dbxref_id,db_id,accession,version,description,url]). +flybase_cols(dbxrefprop,[ dbxrefprop_id,dbxref_id,type_id,value,rank]). +flybase_cols(eimage,[ eimage_id,eimage_data,eimage_type,image_uri]). +flybase_cols(environment,[ environment_id,uniquename,description]). +flybase_cols(environment_loaderm,[ environment_loaderm_id,environment_id,loaderm_id]). +flybase_cols(expression,[ expression_id,uniquename,md5checksum,description]). +flybase_cols(expression_loaderm,[ expression_loaderm_id,expression_id,loaderm_id,rank,loaderm_type_id]). +flybase_cols(expression_loadermprop,[ expression_loadermprop_id,expression_loaderm_id,type_id,value,rank]). +flybase_cols(expression_image,[ expression_image_id,expression_id,eimage_id]). +flybase_cols(expressionprop,[ expressionprop_id,expression_id,type_id,value,rank]). +flybase_cols(expression_pub,[ expression_pub_id,expression_id,pub_id]). +flybase_cols(feature,[ feature_id,dbxref_id,organism_id,name,uniquename,residues,seqlen,md5checksum,type_id,is_analysis,timeaccessioned,timelastmodified,is_obsolete]). +flybase_cols(feature_loaderm,[ feature_loaderm_id,feature_id,loaderm_id,pub_id,is_not]). +flybase_cols(feature_loaderm_dbxref,[ feature_loaderm_dbxref_id,feature_loaderm_id,dbxref_id]). +flybase_cols(feature_loadermprop,[ feature_loadermprop_id,feature_loaderm_id,type_id,value,rank]). +flybase_cols(feature_dbxref,[ feature_dbxref_id,feature_id,dbxref_id,is_current]). +flybase_cols(feature_expression,[ feature_expression_id,expression_id,feature_id,pub_id]). +flybase_cols(feature_expressionprop,[ feature_expressionprop_id,feature_expression_id,type_id,value,rank]). +flybase_cols(feature_genotype,[ feature_genotype_id,feature_id,genotype_id,chromosome_id,rank,cgroup,loaderm_id]). +flybase_cols(feature_grpmember,[ feature_grpmember_id,grpmember_id,feature_id]). +flybase_cols(feature_grpmember_pub,[ feature_grpmember_pub_id,pub_id,feature_grpmember_id]). +flybase_cols(feature_humanhealth_dbxref,[ feature_humanhealth_dbxref_id,humanhealth_dbxref_id,feature_id,pub_id]). +flybase_cols(feature_interaction,[ feature_interaction_id,feature_id,interaction_id,role_id,rank]). +flybase_cols(feature_interactionprop,[ feature_interactionprop_id,feature_interaction_id,type_id,value,rank]). +flybase_cols(feature_interaction_pub,[ feature_interaction_pub_id,feature_interaction_id,pub_id]). +flybase_cols(feature_phenotype,[ feature_phenotype_id,feature_id,phenotype_id]). +flybase_cols(feature_pubprop,[ feature_pubprop_id,feature_pub_id,type_id,value,rank]). +flybase_cols(feature_relationship,[ feature_relationship_id,subject_id,object_id,type_id,rank,value]). +flybase_cols(feature_relationshipprop,[ feature_relationshipprop_id,feature_relationship_id,type_id,value,rank]). +flybase_cols(feature_relationshipprop_pub,[ feature_relationshipprop_pub_id,feature_relationshipprop_id,pub_id]). +flybase_cols(feature_relationship_pub,[ feature_relationship_pub_id,feature_relationship_id,pub_id]). +flybase_cols(feature_synonym,[ feature_synonym_id,synonym_id,feature_id,pub_id,is_current,is_internal]). +flybase_cols(featureloc,[ featureloc_id,feature_id,srcfeature_id,fmin,is_fmin_partial,fmax,is_fmax_partial,strand,phase,residue_info,locgroup,rank]). +flybase_cols(featureloc_pub,[ featureloc_pub_id,featureloc_id,pub_id]). +flybase_cols(featuremap,[ featuremap_id,name,description,unittype_id]). +flybase_cols(featuremap_pub,[ featuremap_pub_id,featuremap_id,pub_id]). +flybase_cols(featurepos,[ featurepos_id,featuremap_id,feature_id,map_feature_id,mappos]). +flybase_cols(featureprop,[ featureprop_id,feature_id,type_id,value,rank]). +flybase_cols(featureprop_pub,[ featureprop_pub_id,featureprop_id,pub_id]). +flybase_cols(feature_pub,[ feature_pub_id,feature_id,pub_id]). +flybase_cols(featurerange,[ featurerange_id,featuremap_id,feature_id,leftstartf_id,leftendf_id,rightstartf_id,rightendf_id,rangestr]). +flybase_cols(genotype,[ genotype_id,uniquename,description,name,is_obsolete]). +flybase_cols(genotype_loaderm,[ genotype_loaderm_id,genotype_id,loaderm_id,pub_id,is_not,rank]). +flybase_cols(genotype_loadermprop,[ genotype_loadermprop_id,genotype_loaderm_id,type_id,value,rank]). +flybase_cols(genotype_dbxref,[ genotype_dbxref_id,genotype_id,dbxref_id,is_current]). +flybase_cols(genotype_synonym,[ genotype_synonym_id,genotype_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(genotypeprop,[ genotypeprop_id,genotype_id,type_id,value,rank,cvalue_id]). +flybase_cols(genotypeprop_pub,[ genotypeprop_pub_id,genotypeprop_id,pub_id]). +flybase_cols(genotype_pub,[ genotype_pub_id,genotype_id,pub_id]). +flybase_cols(grp,[ grp_id,name,uniquename,type_id,is_analysis,is_obsolete]). +flybase_cols(grp_loaderm,[ grp_loaderm_id,is_not,loaderm_id,grp_id,pub_id]). +flybase_cols(grp_dbxref,[ grp_dbxref_id,is_current,dbxref_id,grp_id]). +flybase_cols(grp_pubprop,[ grp_pubprop_id,value,rank,type_id,grp_pub_id]). +flybase_cols(grp_relationship,[ grp_relationship_id,value,rank,type_id,subject_id,object_id]). +flybase_cols(grp_relationshipprop,[ grp_relationshipprop_id,value,rank,type_id,grp_relationship_id]). +flybase_cols(grp_relationship_pub,[ grp_relationship_pub_id,pub_id,grp_relationship_id]). +flybase_cols(grp_synonym,[ grp_synonym_id,synonym_id,grp_id,pub_id,is_current,is_internal]). +flybase_cols(grpmember,[ grpmember_id,rank,type_id,grp_id]). +flybase_cols(grpmember_loaderm,[ grpmember_loaderm_id,is_not,loaderm_id,grpmember_id,pub_id]). +flybase_cols(grpmemberprop,[ grpmemberprop_id,value,rank,type_id,grpmember_id]). +flybase_cols(grpmemberprop_pub,[ grpmemberprop_pub_id,pub_id,grpmemberprop_id]). +flybase_cols(grpmember_pub,[ grpmember_pub_id,pub_id,grpmember_id]). +flybase_cols(grpprop,[ grpprop_id,value,rank,type_id,grp_id]). +flybase_cols(grpprop_pub,[ grpprop_pub_id,pub_id,grpprop_id]). +flybase_cols(grp_pub,[ grp_pub_id,pub_id,grp_id]). +flybase_cols(humanhealth,[ humanhealth_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). +flybase_cols(humanhealth_loaderm,[ humanhealth_loaderm_id,humanhealth_id,loaderm_id,pub_id]). +flybase_cols(humanhealth_loadermprop,[ humanhealth_loadermprop_id,humanhealth_loaderm_id,type_id,value,rank]). +flybase_cols(humanhealth_dbxref,[ humanhealth_dbxref_id,humanhealth_id,dbxref_id,is_current]). +flybase_cols(humanhealth_dbxrefprop,[ humanhealth_dbxrefprop_id,humanhealth_dbxref_id,type_id,value,rank]). +flybase_cols(humanhealth_dbxrefprop_pub,[ humanhealth_dbxrefprop_pub_id,humanhealth_dbxrefprop_id,pub_id]). +flybase_cols(humanhealth_feature,[ humanhealth_feature_id,humanhealth_id,feature_id,pub_id]). +flybase_cols(humanhealth_featureprop,[ humanhealth_featureprop_id,humanhealth_feature_id,type_id,value,rank]). +flybase_cols(humanhealth_phenotype,[ humanhealth_phenotype_id,humanhealth_id,phenotype_id,pub_id]). +flybase_cols(humanhealth_phenotypeprop,[ humanhealth_phenotypeprop_id,humanhealth_phenotype_id,type_id,value,rank]). +flybase_cols(humanhealth_pubprop,[ humanhealth_pubprop_id,value,rank,type_id,humanhealth_pub_id]). +flybase_cols(humanhealth_relationship,[ humanhealth_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(humanhealth_relationship_pub,[ humanhealth_relationship_pub_id,humanhealth_relationship_id,pub_id]). +flybase_cols(humanhealth_synonym,[ humanhealth_synonym_id,humanhealth_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(humanhealthprop,[ humanhealthprop_id,humanhealth_id,type_id,value,rank]). +flybase_cols(humanhealthprop_pub,[ humanhealthprop_pub_id,humanhealthprop_id,pub_id]). +flybase_cols(humanhealth_pub,[ humanhealth_pub_id,humanhealth_id,pub_id]). +flybase_cols(interaction,[ interaction_id,uniquename,type_id,description,is_obsolete]). +flybase_cols(interaction_cell_line,[ interaction_cell_line_id,cell_line_id,interaction_id,pub_id]). +flybase_cols(interaction_loaderm,[ interaction_loaderm_id,interaction_id,loaderm_id]). +flybase_cols(interaction_loadermprop,[ interaction_loadermprop_id,interaction_loaderm_id,type_id,value,rank]). +flybase_cols(interaction_expression,[ interaction_expression_id,expression_id,interaction_id,pub_id]). +flybase_cols(interaction_expressionprop,[ interaction_expressionprop_id,interaction_expression_id,type_id,value,rank]). +flybase_cols(interaction_group,[ interaction_group_id,uniquename,is_obsolete,description]). +flybase_cols(interaction_group_feature_interaction,[ interaction_group_feature_interaction_id,interaction_group_id,feature_interaction_id,rank,ftype]). +flybase_cols(interactionprop,[ interactionprop_id,interaction_id,type_id,value,rank]). +flybase_cols(interactionprop_pub,[ interactionprop_pub_id,interactionprop_id,pub_id]). +flybase_cols(interaction_pub,[ interaction_pub_id,interaction_id,pub_id]). +flybase_cols(library,[ library_id,organism_id,name,uniquename,type_id,is_obsolete,timeaccessioned,timelastmodified]). +flybase_cols(library_loaderm,[ library_loaderm_id,library_id,loaderm_id,pub_id]). +flybase_cols(library_loadermprop,[ library_loadermprop_id,library_loaderm_id,type_id,value,rank]). +flybase_cols(library_dbxref,[ library_dbxref_id,library_id,dbxref_id,is_current]). +flybase_cols(library_dbxrefprop,[ library_dbxrefprop_id,library_dbxref_id,type_id,value,rank]). +flybase_cols(library_expression,[ library_expression_id,expression_id,library_id,pub_id]). +flybase_cols(library_expressionprop,[ library_expressionprop_id,library_expression_id,type_id,value,rank]). +flybase_cols(library_feature,[ library_feature_id,library_id,feature_id]). +flybase_cols(library_featureprop,[ library_featureprop_id,library_feature_id,type_id,value,rank]). +flybase_cols(library_grpmember,[ library_grpmember_id,grpmember_id,library_id]). +flybase_cols(library_humanhealth,[ library_humanhealth_id,humanhealth_id,library_id,pub_id]). +flybase_cols(library_humanhealthprop,[ library_humanhealthprop_id,library_humanhealth_id,type_id,value,rank]). +flybase_cols(library_interaction,[ library_interaction_id,interaction_id,library_id,pub_id]). +flybase_cols(library_relationship,[ library_relationship_id,subject_id,object_id,type_id]). +flybase_cols(library_relationship_pub,[ library_relationship_pub_id,library_relationship_id,pub_id]). +flybase_cols(library_strain,[ library_strain_id,strain_id,library_id,pub_id]). +flybase_cols(library_strainprop,[ library_strainprop_id,library_strain_id,type_id,value,rank]). +flybase_cols(library_synonym,[ library_synonym_id,synonym_id,library_id,pub_id,is_current,is_internal]). +flybase_cols(libraryprop,[ libraryprop_id,library_id,type_id,value,rank]). +flybase_cols(libraryprop_pub,[ libraryprop_pub_id,libraryprop_id,pub_id]). +flybase_cols(library_pub,[ library_pub_id,library_id,pub_id]). +flybase_cols(lock,[ lock_id,username,locktype,lockname,lockrank,lockstatus,timeaccessioend,timelastmodified,chadoxmlfile,comment,task]). +flybase_cols(organism,[ organism_id,abbreviation,genus,species,common_name,comment]). +flybase_cols(organism_loaderm,[ organism_loaderm_id,organism_id,loaderm_id,rank,pub_id]). +flybase_cols(organism_loadermprop,[ organism_loadermprop_id,organism_loaderm_id,type_id,value,rank]). +flybase_cols(organism_dbxref,[ organism_dbxref_id,organism_id,dbxref_id,is_current]). +flybase_cols(organism_grpmember,[ organism_grpmember_id,grpmember_id,organism_id]). +flybase_cols(organism_library,[ organism_library_id,organism_id,library_id]). +flybase_cols(organismprop,[ organismprop_id,organism_id,type_id,value,rank]). +flybase_cols(organismprop_pub,[ organismprop_pub_id,organismprop_id,pub_id]). +flybase_cols(organism_pub,[ organism_pub_id,organism_id,pub_id]). +flybase_cols(phendesc,[ phendesc_id,genotype_id,environment_id,description,type_id,pub_id]). +flybase_cols(phenotype,[ phenotype_id,uniquename,observable_id,attr_id,value,cvalue_id,assay_id]). +flybase_cols(phenotype_comparison,[ phenotype_comparison_id,genotype1_id,environment1_id,genotype2_id,environment2_id,phenotype1_id,phenotype2_id,pub_id,organism_id]). +flybase_cols(phenotype_comparison_loaderm,[ phenotype_comparison_loaderm_id,phenotype_comparison_id,loaderm_id,rank]). +flybase_cols(phenotype_loaderm,[ phenotype_loaderm_id,phenotype_id,loaderm_id,rank]). +flybase_cols(phenstatement,[ phenstatement_id,genotype_id,environment_id,phenotype_id,type_id,pub_id]). +flybase_cols(project,[ project_id,name,description]). +flybase_cols(pub,[ pub_id,title,volumetitle,volume,series_name,issue,pyear,pages,miniref,type_id,is_obsolete,publisher,pubplace,uniquename]). +flybase_cols(pub_dbxref,[ pub_dbxref_id,pub_id,dbxref_id,is_current]). +flybase_cols(pub_relationship,[ pub_relationship_id,type_id,subject_id,object_id]). +flybase_cols(pubauthor,[ pubauthor_id,pub_id,rank,editor,surname,givennames,suffix]). +flybase_cols(pubprop,[ pubprop_id,pub_id,type_id,value,rank]). +flybase_cols(stock,[ stock_id,dbxref_id,organism_id,name,uniquename,description,type_id,is_obsolete]). +flybase_cols(stock_loaderm,[ stock_loaderm_id,stock_id,loaderm_id,pub_id]). +flybase_cols(stock_dbxref,[ stock_dbxref_id,stock_id,dbxref_id,is_current]). +flybase_cols(stock_genotype,[ stock_genotype_id,stock_id,genotype_id]). +flybase_cols(stock_relationship,[ stock_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(stock_relationship_pub,[ stock_relationship_pub_id,stock_relationship_id,pub_id]). +flybase_cols(stockcollection,[ stockcollection_id,type_id,contact_id,name,uniquename]). +flybase_cols(stockcollection_stock,[ stockcollection_stock_id,stockcollection_id,stock_id]). +flybase_cols(stockcollectionprop,[ stockcollectionprop_id,stockcollection_id,type_id,value,rank]). +flybase_cols(stockprop,[ stockprop_id,stock_id,type_id,value,rank]). +flybase_cols(stockprop_pub,[ stockprop_pub_id,stockprop_id,pub_id]). +flybase_cols(stock_pub,[ stock_pub_id,stock_id,pub_id]). +flybase_cols(strain,[ strain_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). +flybase_cols(strain_loaderm,[ strain_loaderm_id,strain_id,loaderm_id,pub_id]). +flybase_cols(strain_loadermprop,[ strain_loadermprop_id,strain_loaderm_id,type_id,value,rank]). +flybase_cols(strain_dbxref,[ strain_dbxref_id,strain_id,dbxref_id,is_current]). +flybase_cols(strain_feature,[ strain_feature_id,strain_id,feature_id,pub_id]). +flybase_cols(strain_featureprop,[ strain_featureprop_id,strain_feature_id,type_id,value,rank]). +flybase_cols(strain_phenotype,[ strain_phenotype_id,strain_id,phenotype_id,pub_id]). +flybase_cols(strain_phenotypeprop,[ strain_phenotypeprop_id,strain_phenotype_id,type_id,value,rank]). +flybase_cols(strain_relationship,[ strain_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(strain_relationship_pub,[ strain_relationship_pub_id,strain_relationship_id,pub_id]). +flybase_cols(strain_synonym,[ strain_synonym_id,strain_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(strainprop,[ strainprop_id,strain_id,type_id,value,rank]). +flybase_cols(strainprop_pub,[ strainprop_pub_id,strainprop_id,pub_id]). +flybase_cols(strain_pub,[ strain_pub_id,strain_id,pub_id]). +flybase_cols(synonym,[ synonym_id,name,type_id,synonym_sgml]). +flybase_cols(tableinfo,[ tableinfo_id,name,primary_key_column,is_view,view_on_table_id,superclass_table_id,is_updateable,modification_date]). +flybase_cols(update_track,[ update_track_id,release,fbid,time_update,author,statement,comment,annotation_id]). + + +table_columns(T,List):- table_columns_tt(TT,List), eigther_contains(T,TT),!. + +table_columns_tt(TT,List):- column_names(TT,List). +table_columns_tt(TT,List):- flybase_cols(TT,List). +table_columns_tt(TT,List):- t_h_n(TT,_,List). + +eigther_contains(TT,T):- TT=T,!. +eigther_contains(T,TT):- symbol_contains(T,TT),!. +eigther_contains(TT,T):- symbol_contains(T,TT),!. + + + + + +column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). +column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). +column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). +column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). +column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). +column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). +% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference +column_names(automated_gene_summaries, [primary_FBgn, summary_text]). +column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). +column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). +column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). +column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). +column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). +column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). +column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). +column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). +column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). +column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). +column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). +column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). +column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). +column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). +column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). +column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). +column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). +column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). +column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). +column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). +column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). +column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). + +column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). +column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). +column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). +column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). +column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). + +column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). + +flybase_tables([ +analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, +cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, +cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, +loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, +expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, +feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, +feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, +feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, +feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, +featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, +genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, +grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, +grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, +humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, +humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, +humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, +interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, +interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, +library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, +library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, + libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, + organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, + phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, + sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, + stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, + strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, +strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). + + + +table_n_type(allele_genetic_interactions, 1, allele_symbol, _). +table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). +table_n_type(allele_genetic_interactions, 3, interaction, _). +table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). +table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). +table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). +table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). +table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). +table_n_type(disease_model_annotations, 5, 'DO', _). +table_n_type(disease_model_annotations, 6, 'DO_term', _). +table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). +table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). +table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). +table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). +table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). +table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). +table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). +table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). +table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). +table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). +table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). +table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). +table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). +table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). +table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). +table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). +table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). +table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). +table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). +table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). +table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). +table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). +table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). +table_n_type(gene_map_table, 1, organism_abbreviation, _). +table_n_type(gene_map_table, 2, current_symbol, _). +table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). +table_n_type(gene_map_table, 4, recombination_loc, _). +table_n_type(gene_map_table, 5, cytogenetic_loc, _). +table_n_type(gene_map_table, 6, sequence_loc, _). +table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). +table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). +table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). +table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). +table_n_type(physical_interactions_mitab, 9, 'Publication', _). +table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). +table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). +table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). +table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). +table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). +table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). +table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). +table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). +table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). +table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). +table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). +table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). +table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). +table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). +table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). +table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). +table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). +table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). +table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). +table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). +table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). +table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). +table_n_type(physical_interactions_mitab, 36, 'Negative', _). +table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). +table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). +table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). +table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). +table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). +table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). +table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). +table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). +table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). +table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). +table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). +table_n_type(cDNA_clone, 2, organism_abbreviation, _). +table_n_type(cDNA_clone, 3, clone_name, _). +table_n_type(cDNA_clone, 4, dataset_metadata_name, _). +table_n_type(cDNA_clone, 5, cDNA_accession, _). +table_n_type(cDNA_clone, 6, 'EST_accession', _). +table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). +table_n_type(genomic_clone, 2, organism_abbreviation, _). +table_n_type(genomic_clone, 3, clone_name, _). +table_n_type(genomic_clone, 4, accession, _). +/* +table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(fbgn_uniprot, 2, gene_symbol, _). +table_n_type(fbgn_uniprot, 3, 'CG', _). +table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). +table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). +table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +*/ +table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). +table_n_type(automated_gene_summaries, 2, summary_text, _). + +table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). +table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). +table_n_type(best_gene_summary, 3, 'Summary_Source', _). +table_n_type(best_gene_summary, 4, 'Summary', _). +table_n_type('Dmel_enzyme', 1, gene_group_id, _). +table_n_type('Dmel_enzyme', 2, gene_group_name, _). +table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). +table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). +table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). +table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). +table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). +table_n_type('Dmel_enzyme', 8, gene_symbol, _). +table_n_type('Dmel_enzyme', 9, gene_name, _). +table_n_type('Dmel_enzyme', 10, gene_EC_number, _). +table_n_type('Dmel_enzyme', 11, gene_EC_name, _). +table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). +table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). +table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). +table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). +table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). +table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). +table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). +table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). +table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). +table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). +table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). +table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). +table_n_type(fbgn_gleanr, 2, gene_symbol, _). +table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_gleanr, 4, 'GLEANR', _). +/* +table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). +table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). +table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). +table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). +table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). +*/ +table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). +table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). +table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). +table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). +table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). +table_n_type(gene_group, 1, 'FB_group', 'FBgg'). +table_n_type(gene_group, 2, 'FB_group_symbol', _). +table_n_type(gene_group, 3, 'FB_group_name', _). +table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). +table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). +table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). +table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). +table_n_type(gene_rpkm_matrix, 4, gene_type, _). +table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). +table_n_type(gene_rpkm_report, 1, 'Release_ID', _). +table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). +table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). +table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). +table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). +table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). +table_n_type(gene_rpkm_report, 9, 'Bin_value', _). +table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). +table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). +table_n_type(gene_rpkm_report, 12, 'Count_used', _). +table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). +table_n_type(gene_snapshots, 2, 'GeneSymbol', _). +table_n_type(gene_snapshots, 3, 'GeneName', _). +table_n_type(gene_snapshots, 4, datestamp, _). +table_n_type(gene_snapshots, 5, gene_snapshot_text, _). +table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). +table_n_type(pathway_group, 2, 'FB_group_symbol', _). +table_n_type(pathway_group, 3, 'FB_group_name', _). +table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(insertion_mapping, 1, insertion_symbol, _). +table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). +table_n_type(insertion_mapping, 3, genomic_location, _). +table_n_type(insertion_mapping, 4, range, _). +table_n_type(insertion_mapping, 5, orientation, _). +table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). +table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). +table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). +table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). +table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). +table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). +table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). +table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). +table_n_type(dataset_metadata, 3, 'Item_ID', _). +table_n_type(dataset_metadata, 4, 'Item_Name', _). +table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). +table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). +table_n_type(dmel_paralogs, 4, 'Location', _). +table_n_type(dmel_paralogs, 5, 'Strand', _). +table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). +table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). +table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). +table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). +table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). +table_n_type(entity_publication, 1, entity_id, _). +table_n_type(entity_publication, 2, entity_name, _). +table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). +table_n_type(entity_publication, 4, 'PubMed', _). +table_n_type(organism_list, 1, genus, _). +table_n_type(organism_list, 2, species, _). +table_n_type(organism_list, 3, abbreviation, _). +table_n_type(organism_list, 4, common_name, _). +table_n_type(organism_list, 5, 'NCBI_taxon', _). +table_n_type(organism_list, 6, 'drosophilid?', _). +table_n_type(stocks, 1, stock_id, 'FBst'). +table_n_type(stocks, 2, dbxref_id, _). +table_n_type(stocks, 3, organism_id, _). +table_n_type(stocks, 4, name, _). +table_n_type(stocks, 5, uniquename, _). +table_n_type(stocks, 6, description, _). +table_n_type(stocks, 7, type_id, _). +table_n_type(stocks, 8, is_obsolete, _). +table_n_type(synonym, 1, primary_FBid, 'FBgn'). +table_n_type(synonym, 2, organism_abbreviation, _). +table_n_type(synonym, 3, current_symbol, _). +table_n_type(synonym, 4, current_fullname, _). +table_n_type(synonym, 5, fullname_synonym, _). +table_n_type(synonym, 6, symbol_synonym, _). + + +guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). + +:- dynamic numeric_value_p_n/3. +:- module_transparent numeric_value_p_n/3. + +numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). +numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). +numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). +numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). +numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). +numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). +numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). +numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). +numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). +numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). +numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). +numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). +numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). +numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). +numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). +numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). +numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). +numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). +numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). +numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). +numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). +numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). +numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). +numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). +numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). +numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). +numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). +numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). +numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). +numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). +numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). +numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). +numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). +numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). +numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). +numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). +numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). +numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). +numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). +numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). +numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). +numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). +numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). +numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). +numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). +numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). +numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). +numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). +numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). +numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). +numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). +numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). +numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). +numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). +numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). +numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). +numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). +numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). +numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). +numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). +numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). +numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). +numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). +numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). +numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). +numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). +numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). +numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). +numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). +numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). +numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). +numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). +numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). +numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). +numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). +numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). +numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). +numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). +numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). +numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). +numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). +numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). +numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). +numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). +numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). +numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). +numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). +numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). +numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). +numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). +numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). +numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). +numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). +numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). +numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). +numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). +numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). +numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). +numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). +numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). +numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). +numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). +numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). +numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). +numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). +numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). +numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). +numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). +numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). +numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). +numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). +numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). +numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). +numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). +numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). +numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). +numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). +numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). +numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). +numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). +numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). +numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). +numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). +numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). +numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). +numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). +numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). +numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). +numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). +numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). +numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). +numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). +numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). +numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). +numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). +numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). +numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). +numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). +numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). +numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). +numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). +numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). +numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). +numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). +numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). +numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). +numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). +numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). +numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). +numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). +numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). +numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). +numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). +numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). +numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). +numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). +numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). +numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). +numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). +numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). +numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). +numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). +numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). +numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). +numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). +numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). +numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). +numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). +numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). +numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). +numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). +numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). +numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). +numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). +numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). +numeric_value_p_n(gene_snapshots, 4, datestamp). +numeric_value_p_n(insertion_mapping, 5, orientation). +numeric_value_p_n(dmel_paralogs, 5, 'Strand'). +numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). +numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). +numeric_value_p_n(entity_publication, 4, 'PubMed'). +numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). + + +ncRNA_genes_fb_scheme( +' +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "title": "RNAcentral ncRNA object", + "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", + "id": "ncrna.json#", + "type": "object", + "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], + "additionalProperties": false, + "properties": { + "primaryId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." + }, + "taxonId": { + "$ref" : "global-id.json#/properties/globalId", + "description" : "The NCBI taxonId for the species of the gene entity." + }, + "soTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." + }, + "ecoTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The ECO Term that represents the evidence for this sequence having the given SO term." + }, + "sequence": { + "$ref": "sequence.json#properties/sequence", + "description": "The DNA sequence of this entry." + }, + "name": { + "type": "string", + "description": "The name of this sequence." + }, + "description": { + "type": "string", + "description": "An informative human readable description. If not provided then it will be generated using the name and species information." + }, + "symbol": { + "type": "string", + "description": "The symbol for this ncRNA" + }, + "symbolSynonyms": { + "type": "array", + "items": { + "type": "string" + }, + "uniqueItems": true, + "description": "A list of other symbols for the ncRNA" + }, + "version": { + "description": "The version of this sequence, if any" + }, + "gene": { + "$ref": "gene.json#" + }, + "crossReferenceIds": { + "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", + "type": "array", + "items": { + "$ref" : "global-id.json#/properties/globalId" + }, + "uniqueItems": true + }, + "genomeLocations": { + "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", + "type": "array", + "items": { + "$ref" : "location.json#" + }, + "uniqueItems": true + }, + "url": { + "type": "string", + "format": "uri", + "description": "URL to the page for this entry in the database" + }, + "externalUrl": { + "type": "string", + "format": "uri", + "description": "URL to a synopsis outside the database, like wikipedia." + }, + "secondaryStructure": { + "description": "The secondary structure in dot-bracket notation for this sequence", + "$ref": "secondary-structure.json#/properties/dot_bracket" + }, + "publications": { + "description": "List of references to associate with this sequence.", + "type": "array", + "items": { + "anyOf": [ + { "$ref": "publications.json#/properties/pubMedId" }, + { "$ref": "publications.json#/properties/doi" } + ] + }, + "uniqueItems": true + }, + "localization": { + "description": "Name of the organelle or plasmid this sequence is found in", + "enum": [ + "mitochondria", + "plastid", + "chloroplast", + "plasmid" + ] + }, + "sequenceFeatures": { + "anticodon": { + "description": "Information about the anticodon", + "$ref": "anticodon.json#" + }, + "modifications": { + "description": "List of the modifications in this sequence", + "type": "array", + "items": { + "$ref": "modification.json#" + }, + "uniqueItems": true + } + }, + "sourceModel": { + "description": "Information about the model used to find this sequence", + "$ref" : "global-id.json#/properties/globalId" + }, + "product": { + "description": "The name of the product, this should be more specific than the name of the SO term that was provided", + "type": "string" + }, + "additionalAnnotations": { + "isoType": { + "description": "The isoType of this tRNA", + "enum": [ + "Ala", + "Cys", + "Asp", + "Glu", + "Phe", + "Gly", + "His", + "Ile", + "Lys", + "Leu", + "iMet", + "Met", + "Asn", + "Pro", + "Gln", + "Arg", + "Ser", + "Thr", + "Val", + "Trp", + "Tyr" + ] + } + }, + "relatedSequences": { + "description": "Information about related sequences, like precursors or targets", + "type": "array", + "items": { + "$ref": "related-sequence.json#" + }, + "uniqueItems": true + }, + "inferredPhylogeny": { + "description": "A phylogeny that has been inferred for this sequence", + "$ref": "inferred-phylogeny.json#" + } + } +}'). + + + +ucn(allele_genetic_interactions,[]). +ucn(dataset_metadata,[]). +ucn(disease_model_annotations,[]). +ucn('Dmel_enzyme',[]). +ucn(dmel_gene_sequence_ontology_annotations,[]). +ucn(dmel_human_orthologs_disease,[]). +ucn(dmel_paralogs,[]). +ucn(entity_publication,[]). +ucn(fbgn_gleanr,[]). +ucn(fbgn_NAseq_Uniprot,[]). +ucn(fbgn_uniprot,[]). +ucn(gene_functional_complementation,[]). +ucn(gene_genetic_interactions,[]). +ucn(gene_group,[]). +ucn(gene_groups_HGNC,[]). +ucn(genotype_phenotype,[]). +ucn(insertion_mapping,[]). +ucn(organism_list,[]). +ucn(pathway_group,[]). +ucn(pmid_fbgn_uniprot,[]). +ucn('scRNA-Seq_gene_expression',[]). + +ucn(dmel_unique_protein_isoforms, 3). % ,a-PA,)) +ucn(best_gene_summary, 1). % ,FBgn0031081,) (2 ,Nep3,)) +ucn(cDNA_clone, 1). % ,FBcl0000001,) (3 ,UUGC0315,)) +ucn(fb_synonym, 1). % ,FBal0000001,)) +ucn(fbal_to_fbgn, 1). % ,FBal0137236,)) +ucn(fbgn_annotation_ID.tsv, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) +ucn(fbgn_annotation_ID, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) +ucn(fbgn_fbtr_fbpp_expanded, 8). % ,FBtr0081624,) (9 ,7SLRNA:CR32864-RA,)) +ucn(fbgn_fbtr_fbpp, 2). % ,FBtr0081624,)) +ucn(fbrf_pmid_pmcid_doi, 1). % ,FBrf0026179,) (2 ,37280885,)) +ucn(gene_map_table, 2). % ,snRNA:4.5S,) (3 ,FBgn0000001,)) +ucn(gene_rpkm_matrix, 1). % ,FBgn0031081,) (2 ,Nep3,)) +ucn(gene_rpkm_report,[]). +ucn(gene_snapshots, 1). % ,FBgn0052532,) (2 ,CG32532,)) +ucn('genome-cyto-seq', 1). % ,21B2,) (2 ,98620,) (3 ,134010,)) +ucn('cyto-genetic-seq', 1). % ,1A,)) +ucn(genomic_clone, 1). % ,FBcl0297251,) (3 ,BACR13J02,)) +ucn(stocks ,1). % ,FBst,)) +ucn(physical_interactions_mitab, 14). %,flybase:FBrf0218395-7641.DPiM,)) + + +list_column_names:- + for_all((column_names(T,CNs),once((length(CNs,Len),Len>=2,fb_pred(T,Len)))), + (print(column_names(T,CNs)),nl)). + + +%:- ensure_loaded(read_obo). + +show_cmds:- prolog_load_context(source,This),for_all((source_file(P0,This),functor(P0,F,0)),writeln(add_history1(F))). +%add_history1(setup_flybase_cols) +%add_history1(pmt) +ah:- add_history1(fb_stats), + add_history1(mine_overlaps), + add_history1(load_flybase), + add_history(fb_stats), + add_history(mine_overlaps), + add_history(try_overlaps), + add_history(load_flybase). +%:- ah,ah,ah. + +%:- initialization(load_flybase). + + + + +% ============== +% METTA COMPILER +% ============== +%:- ensure_loaded(metta_compiler). +:- ensure_loaded(metta_interp). +%:- ensure_loaded(metta_python). + + diff --git a/metta_vspace/pyswip-12-15/flybase_obo.pl b/metta_vspace/pyswip-12-15/flybase_obo.pl new file mode 100755 index 00000000..ea8133d8 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_obo.pl @@ -0,0 +1,294 @@ +% =========================================== +% BEGIN OBO Loader +% - Douglas R. Miles 2023 +% =========================================== + +% requires: assert_MeTTa/1, track_load_into_file/2 + +:- use_module(library(logicmoo_utils)). +:- ensure_loaded(flybase_main). + +assert_OBO(P,X,Y):- assert_OBO(ontology_info(P,X,Y)). + +% Main entry point +load_obo(Filename) :- \+ atomic(Filename), + absolute_file_name(Filename,X,[read(exists),extension(['']),file_type(directory), + file_errors(fail),solutions(first)]), !, load_obo(X). +load_obo(Filename) :- \+ atomic(Filename), !, + absolute_file_name(Filename,X,[read(exists),extension(['']), file_errors(fail),solutions(first)]), !, load_obo(X). +load_obo(Filename) :- + atomic(Filename), \+ exists_file(Filename), expand_file_name(Filename,List), + List\==[], List\==[Filename], + maplist(load_obo,List). +load_obo(Directory) :- + atomic(Directory), exists_directory(Directory), + directory_file_path(Directory, "*.obo", Filename), + expand_file_name(Filename,List),!,maplist(load_obo,List). +load_obo(Filename) :- fail, + process_obo_file(Filename),!. +load_obo(Filename) :- + process_obo_direct(Filename),!. + + +process_obo_file(File):- atom_concat(File,'.metta_x',MXFile),process_obo_file(File,MXFile). +process_obo_file(_File,MXFile):- exists_file(MXFile),!,process_metta_x_file(MXFile). +process_obo_file(File, MXFile):- exists_file(File),!, + setup_call_cleanup( + open(MXFile,write,Strm,[]), + setup_call_cleanup( + set_stream(Strm,alias(metta_x_output)), + with_option(make_metta_x,'True', + process_obo_direct(File)), + set_stream(current_output,alias(metta_x_output))), + close(Strm)), + remove_duplicates(MXFile), + process_metta_x_file(MXFile). +process_obo_file(File, MXFile):- throw(process_obo_file(File, MXFile)). + + + +% remove_duplicates(+InputFile) - removes duplicate lines from a file in place. +remove_duplicates(InputFile) :- + % Create a temporary output file + format(atom(OutputFile), '~w.tmp', [InputFile]), + % Build the command to remove duplicates and output to the temporary file + format(atom(Command), 'sort ~w | uniq > ~w', [InputFile, OutputFile]), + % Execute the command + shell(Command, ExitStatus), + % Check the exit status + ExitStatus =:= 0, + % Move the temporary output file to the original input file + format(atom(Command2), 'mv ~w ~w', [OutputFile, InputFile]), + shell(Command2, ExitStatus2), + ExitStatus2 =:= 0,!. + +% rename_file(+Source, +Destination) - renames or moves a file. +rename_file(Source, Destination) :- + rename(Source, Destination). + +process_obo_direct(Filename):- + directory_file_path(Directory, BaseName, Filename), + file_name_extension(Id, _, BaseName), + symbol_concat(Id,'.metta',OutputFile), + nop(tell(OutputFile)), + track_load_into_file(Filename, + must_det_ll(( + Type = 'OntologyFile', + assert_OBO(id_type,Id,Type), + nb_setval(obo_id,Id),nb_setval(obo_type,Type), + assert_OBO('pathname',Id,Filename),!, + assert_OBO('basename',Id,BaseName),!, + assert_OBO('directory',Id,Directory),!, + setup_call_cleanup(open(Filename, read, Stream, [encoding(utf8)]), + process_obo_stream_repeat(Stream), + close(Stream))))), + nop(told). + + +process_obo_stream_repeat(Stream):- + repeat, + nb_current(obo_type,Type), + nb_current(obo_id, Id), + once((read_line_to_string(Stream, Line), + ((should_show_data(_),fail) -> writeln(Line); true), + normalize_space(chars(Chars),Line))), + Chars\==[], + once(process_obo_chars( Type, Chars, Id)), + ((at_end_of_stream(Stream);reached_file_max) -> ! ; fail). + + +process_obo_stream(Stream,_Type,_Id) :- (at_end_of_stream(Stream);reached_file_max),!. +process_obo_stream(Stream, Type, Id) :- + must_det_ll(( + read_line_to_string(Stream, Line), %writeln(Line), + normalize_space(chars(Chars),Line), + process_obo_chars( Type, Chars, Id))). + + +into_rest(Rest,RestChars,RestStr):- + obo_string(Str,Rest), + normalize_space(chars(RestChars),Str), + obo_string(RestStr,RestChars). + +obo_string(String,[C|Chars]):- var(String), C==' ',!, obo_string(String,Chars). +obo_string(String,Chars):- string_chars(String,Chars). + +process_obo_chars( _, [e,n,d,'_',o,f,'_',f,i,l,e], _):-!. +process_obo_chars( _, [], _) :- !. + +process_obo_chars( _, ['['|Chars], _):- append(Left,[']'],Chars),!, + must_det_ll(( symbol_chars(Type,Left),!, nb_setval(obo_type,Type))). + +process_obo_chars( Type, Chars, _):- + get_key(Key,Chars,Rest),Key == id, + into_rest(Rest,RestChars,_RestStr), + symbol_chars(Id,RestChars), assert_OBO(id_type,Id,Type), + nb_setval(obo_id,Id),nb_setval(obo_type,Type). + +process_obo_chars( Type, Chars, Id):- + must_det_ll(( + get_key(Key,Chars,Rest), + into_rest(Rest,RestChars,RestStr), + process_obo_rest_line(Type,Id,Key,RestChars,RestStr))),!. + +process_obo_rest_line(Type,Id,Reln,Rest,_):- Reln = id, + get_some_items([item(Id)],Rest,[]),!, assert_OBO(id_type,Id,Type),!. +process_obo_rest_line(_Type,Id,Ref,_Chars,S):- + member(Ref,[name,comment]), + assert_OBO(Ref,Id,S),!. + +process_obo_rest_line(Type,Id,Reln,Chars,_):- Reln = relationship,!, + must_det_ll(( + key_like_string(KeyLike,Chars,Rest), + symbol_chars(Key,KeyLike), + into_rest(Rest,RestChars,RestStr), + process_obo_rest_line(Type,Id,Key,RestChars,RestStr))). + +process_obo_rest_line(_Type,Id,Ref,Chars,_):- + \+ (member(C,Chars),member(C,['!','[','"'])), + ( \+ member(' ',Chars)-> symbol_chars(S,Chars);obo_string(S,Chars)), + assert_OBO(Ref,Id,S),!. + +process_obo_rest_line(_Type,Id,is_a,Chars,Str):- + member('!',Chars), atomic_list_concat([L,R],' ! ',Str), + normalize_space(atom(T),L),normalize_space(string(N),R), + assert_OBO(is_a,Id,T), assert_OBO(name,T,N),!. + +process_obo_rest_line(_Type,Id,Reln,Chars,_):- + % member(Reln,[synonym]), + get_some_items(List,Chars,[]), + maplist(fix_obo_arg,List,Args), + Assert=..[Reln,Id|Args], + assert_OBO(Assert),!. + +%process_obo_rest_line(_Type,Id,Reln,Chars,_):- get_some_items(List,Chars,[]), maplist(arg(1),List,Args), assert_OBO(Reln,Id,Args). +process_obo_rest_line(Type,Id,Miss,Rest,Str):- + pp_fb('ERROR'(process_obo_rest_line(Type,Id,Miss,Rest,Str))),!. + +fix_obo_arg(Var,Var):- var(Var),!. +fix_obo_arg("[]",[]):- !. +fix_obo_arg('[]',[]):- !. +fix_obo_arg(X,Y):- string(X),!,normalize_space(string(Y),X). +fix_obo_arg(X,Y):- atom(X),!,normalize_space(atom(Y),X). +fix_obo_arg(X,Y):- compound(X),arg(1,X,XX),!,fix_obo_arg(XX,Y). + +fix_obo_arg(X,X). + +/* +Given the DCG rules we've defined, the input + +``` OBO + +[Term] +id: FBcv:0000391 +name: bang sensitive +namespace: phenotypic_class +def: "A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis." [FlyBase:FBrf0022877] +synonym: "easily shocked" RELATED [FlyBase:FBrf0022877] +is_a: FBcv:0000389 ! paralytic + +``` +Would be parsed into the following Prolog terms: +``` +[ + bracketed(['Term']), + key('id'), item('FBcv:0000391'), + key('name'), item('bang sensitive'), + key('namespace'), item('phenotypic_class'), + key('def'), quoted("A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis."), bracketed(['FlyBase:FBrf0022877']), + key('synonym'), quoted("easily shocked"), keyword('RELATED'), bracketed(['FlyBase:FBrf0022877']), + key('is_a'), item('FBcv:0000389'), named('paralytic') +] +``` + +*/ + + +get_key(Key)-->key_like_string(Chars),[':'],{symbol_chars(Key,Chars)},!. +get_some_items(I)--> [' '],!,get_some_items(I). +get_some_items(_,[],[]):-!. +get_some_items([H|T])-->get_one_item(H),get_some_items(T). get_some_items([])-->[]. +get_one_item(I)--> [' '],!,get_one_item(I). +get_one_item(quoted(Item))-->[x,s,d,':'],symbol_or_url(Chars),{symbol_chars(Item,[x,s,d,':'|Chars])}. +get_one_item(quoted(Item))-->[h,t,t,p],symbol_or_url(Chars),{obo_string(Item,[h,t,t,p|Chars])}. +get_one_item(quoted(Item))-->[f,t,p],symbol_or_url(Chars),{obo_string(Item,[f,t,p|Chars])}. +get_one_item(quoted(Item))-->['"'],string_until_end_quote(Chars),{obo_string(Item,Chars)}. +get_one_item(named(Item))-->['!'],whs,named_like_string(Chars),{symbol_chars(Item,Chars)}. +get_one_item(bracketed(Items))-->['['],whs,items(Items),whs,[']']. +get_one_item(bracketed(Items))-->['{'],whs,items(Items),whs,['}']. +%get_one_item(item(Item))--> whs,key_like_string(Chars),whs,{Chars \==[], symbol_chars(Item,Chars)}. +get_one_item(keyword(Keyword))-->whs,id_like_string(Chars),{Chars\==[]},whs,{symbol_chars(Keyword,Chars)}. +get_one_item(text(Text))-->named_like_string(Chars),{obo_string(Text,Chars)}. +get_one_item(text(Text),[H|T],[]):- ground([H|T]),obo_string(Text,[H|T]),!. +items([Item|Rest])-->item(Item),whs,[','],whs,items(Rest). +items([Item])-->item(Item),!. +item(Item)-->symbol_or_url(Chars),{Chars\==[],symbol_chars(Item,Chars)}. +key_like_string([H|T])-->[H],{\+member(H,[':',' ','\t','\n'])},key_like_string(T). +key_like_string([])-->[]. +id_like_string([H|T])-->[H],{\+member(H,['!',' ','\t','\n',',','[',']','{','}','"'])},id_like_string(T). +id_like_string([])-->[]. +symbol_or_url([H|T])-->[H],{\+member(H,[',','[',']','"',' '])},symbol_or_url(T). +symbol_or_url([])-->[]. +string_until_end_quote([])-->['"'],!. +string_until_end_quote([H|T])-->(['\\',H];[H]),!,string_until_end_quote(T). +named_like_string([H|T])-->[H],{\+member(H,['\n'])},named_like_string(T). +named_like_string([])-->[]. +whs-->[''],!,whs. whs-->[]. + +% =========================================== +% END OBO Loader +% =========================================== + +assert_OBO(property_value(Term, URI, V, 'xsd:string')):- assert_OBO(property_value(Term, URI, V)). +assert_OBO(property_value(Term, URI, V)):- simplify_obo_arg(URI,Pred),!,assert_OBO(property_value(Term, Pred, V)). +assert_OBO(property_value(Term, Pred, V)):- simplify_obo_arg(V,VV),!,assert_OBO(property_value(Term, Pred, VV)). +assert_OBO(property_value(Term, Pred, V)):- atom(Pred),!,OBO=..[Pred,Term,V],assert_OBO(OBO). +assert_OBO(synonym(Pred,A,Term,V)):- simplify_obo_arg(V,VV),!,assert_OBO(synonym(Pred,A,Term,VV)). +assert_OBO(ontology_info(Pred,Term,V)):- assert_OBO(property_value(Term, Pred, V)). +assert_OBO([F|List]):- is_list([F|List]),atom(F),OBO=..[F|List],!,assert_OBO(OBO). +assert_OBO(OBO):- + must_det_ll(( + OBO=..[Fn|Cols], + into_obofn(Fn,OboFn), + assert_OB1([OboFn|Cols]))). + +assert_OB1(List):- nb_current(make_metta_x,'True'),!, assert_OB2(List). +assert_OB1([OboFn|Cols]):- + OBO1=..[OboFn|Cols], + assert_MeTTa(OBO1). + +assert_OB2(List):- maplist(to_metta_x_args,List,ListO), + atomics_to_string(ListO,'\t',Str), + writeln(metta_x_output,Str). + +to_metta_x_args(X,O):- X==[],!,O='[]'. +to_metta_x_args(X,O):- atomic(X),!,O=X. +to_metta_x_args(X,O):- term_to_atom(X,O). + +args_x_metta(X,O):- X=='[]',!,O=[]. +args_x_metta(X,O):- atomic(X),atom_concat('?-',Read,X),!,atom_to_term(Read,O,_). +args_x_metta(X,O):- X=O. +/* + OBOW=..[OboFn|Cols], + (is_converting -> (format('~N'), write_src(OBOW));(OBO1=..OBOW,assert_MeTTa(OBO1))))), + !. +*/ + +into_obofn(Fn,OboFn):- atom_concat('obo-',_,Fn),!,Fn=OboFn,!. +into_obofn(Fn,OboFn):- atom_concat('obo-',Fn,OboF_),!,use_dashes(OboF_,OboFn). + + +use_dashes(OboF_,OboFn):- + atomic_list_concat(List,'_',OboF_), + atomic_list_concat(List,'-',OboFn),!. + + +simplify_obo_arg(I,_O):- \+ string(I), \+ atom(I),!,fail. +simplify_obo_arg([],_O):- !, fail. +simplify_obo_arg("[]",[]):-!. +simplify_obo_arg(I,O):- atom_concat('http://purl.obolibrary.org/obo/chebi/',O,I),!. +simplify_obo_arg(I,O):- atom_concat(' ',O,I),!. +simplify_obo_arg(I,O):- atom_concat(O,' ',I),!. +simplify_obo_arg(I,O):- atom_number(I,O),!. + + diff --git a/metta_vspace/pyswip-12-15/flybase_scheme.pl b/metta_vspace/pyswip-12-15/flybase_scheme.pl new file mode 100755 index 00000000..24c261a3 --- /dev/null +++ b/metta_vspace/pyswip-12-15/flybase_scheme.pl @@ -0,0 +1,2716 @@ +'information_schema.columns'(flybase,pg_catalog,pg_stat_database,temp_bytes,15,'','YES',bigint,'','',64,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int8,'','','','',15,'NO','NO','','','','','','NO','NEVER','','NO'). +'information_schema.columns'(flybase,pg_catalog,pg_type,typelem,13,'','NO',oid,'','','','','','','','','','','','','','','','','',flybase,pg_catalog,oid,'','','','',13,'NO','NO','','','','','','NO','NEVER','','YES'). 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a/metta_vspace/pyswip-12-15/metta_compiler.pl b/metta_vspace/pyswip-12-15/metta_compiler.pl new file mode 100755 index 00000000..940996b2 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_compiler.pl @@ -0,0 +1,1645 @@ +% ============================== +% Prolog to MeTTa transpilation (which uses the Host SWI-Prolog compiler) +% This Prolog code block is mainly aimed at compiling/optimizing and transforming +% Prolog predicates to functional equivalents and vice versa, with special attention +% to handling different logical constructs and performing conversions between +% functions and predicates. +% ============================== + +% Setting the file encoding to ISO-Latin-1 +:- encoding(iso_latin_1). +% Flushing the current output +:- flush_output. +% Setting the Rust backtrace to Full +:- setenv('RUST_BACKTRACE',full). +% Loading various library files +:- ensure_loaded(swi_support). +:- ensure_loaded(metta_testing). +:- ensure_loaded(metta_utils). +:- ensure_loaded(metta_reader). +:- ensure_loaded(metta_interp). +:- ensure_loaded(metta_space). +% ======================================= +% TODO move non flybase specific code between here and the compiler +:- ensure_loaded(flybase_main). +% ======================================= +:- set_option_value(encoding,utf8). + +% Meta-predicate that ensures that for every instance where G1 holds, G2 also holds. +:- meta_predicate(for_all(0,0)). +for_all(G1,G2):- forall(G1,G2). + +:- op(700,xfx,'=~'). + +compound_non_cons(B):- compound(B), \+ B = [_|_]. +iz_conz(B):- compound(B), B=[_|_]. + +'=~'(A,B):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). +'=~'(B,A):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). +'=~'(A,B):- iz_conz(A),iz_conz(B),!,A=B. +'=~'(A,B):- var(A),iz_conz(B),!,A=B. +'=~'(A,B):- iz_conz(A),var(B),!,A=B. +'=~'(A,B):- compound_non_cons(A),var(B),!,A=..B. +'=~'(A,B):- compound_non_cons(B),!,A=B. +'=~'(A,B):- '=..'(A,B). + +%into_list_args(A,AA):- is_ftVar(A),AA=A. +%into_list_args(C,[C]):- \+ compound(C),!. +into_list_args(C,C):- \+ compound(C),!. +into_list_args(A,AA):- is_ftVar(A),AA=A. +into_list_args([H|T],[H|T]):- \+ is_list(T),!. +into_list_args([H,List,A],HT):- H == u_assign,!,append(List,[A],HT),!. +into_list_args([H|T],[H|T]):- is_list(T),!. +into_list_args(u_assign(List, A),[H|T]):- append(List,[A],[H|T]),!. +into_list_args(holds(A),AA):- !, into_list_args(A,AA),!. +into_list_args(C,FArgs):- compound_name_arguments(C,F,Args),!,into_list_args([F|Args],FArgs). + + + +compound_name_list(AsPred,FP,PredArgs):- var(AsPred),!,AsPred=[FP|PredArgs]. +compound_name_list(AsPred,FP,PredArgs):- iz_conz(AsPred),!,AsPred=[FP|PredArgs]. +compound_name_list(AsPred,FP,PredArgs):- into_list_args(AsPred,[FP|PredArgs]),!. +compound_name_list(AsPred,FP,PredArgs):- compound_non_cons(AsPred),!,compound_name_arguments(AsPred,FP,PredArgs). +% =============================== +% COMPILER / OPTIMIZER +% Scryer Compiler vs PySWIP ASM Compiler +% +% PySWIP is 222 times faster per join +% =============================== + + +% Conversion is possible between a function and a predicate of arity when the result is at the nth arg +:- dynamic decl_functional_predicate_arg/3. + +% Converion is possible between a function and predicate is tricky +functional_predicate_arg_tricky(is, 2, 1). % E.g. eval(is(+(1,2)),Result) converts to is(Result,+(1,2)). +% Defining standard mappings for some common functions/predicates +decl_functional_predicate_arg(append, 3, 3). +decl_functional_predicate_arg(+, 3, 3). +decl_functional_predicate_arg(pi, 1, 1). +decl_functional_predicate_arg('Empty', 1, 1). +decl_functional_predicate_arg(call,4,4). +decl_functional_predicate_arg(eval, 2, 2). +decl_functional_predicate_arg(edge, 2, 2). +decl_functional_predicate_arg('==', 2, 2). +decl_functional_predicate_arg('is-same', 2, 2). +decl_functional_predicate_arg(assertTrue, 2, 2). +decl_functional_predicate_arg(case, 3, 3). +decl_functional_predicate_arg(assertFalse, 2, 2). +decl_functional_predicate_arg(match,4,4). +decl_functional_predicate_arg('TupleConcat',3,3). +decl_functional_predicate_arg('new-space',1,1). + +decl_functional_predicate_arg(superpose, 2, 2). + +do_predicate_function_canonical(F,FF):- predicate_function_canonical(F,FF),!. +do_predicate_function_canonical(F,F). +predicate_function_canonical(is_Empty,'Empty'). + +% Mapping any current predicate F/A to a function, if it's not tricky +functional_predicate_arg(F, A, L):- decl_functional_predicate_arg(F, A, L). +functional_predicate_arg(F, A, L):- (atom(F)->true;trace), predicate_arity(F,A), + \+ functional_predicate_arg_tricky(F,A,_), L=A, + \+ decl_functional_predicate_arg(F, A, _). +functional_predicate_arg(F, A, L):- functional_predicate_arg_tricky(F, A, L). + +predicate_arity(F,A):- metta_atom('&self',[:,F,[->|Args]]), length(Args,A). +predicate_arity(F,A):- current_predicate(F/A). +% Certain constructs should not be converted to functions. +not_function(P):- atom(P),!,not_function(P,0). +not_function(P):- callable(P),!,functor(P,F,A),not_function(F,A). +not_function(F,A):- is_arity_0(F,FF),!,not_function(FF,A). +not_function(!,0). +not_function(print,1). +not_function((':-'),2). +not_function((','),2). +not_function((';'),2). +not_function(('='),2). +not_function(('or'),2). + +not_function('a',0). +not_function('b',0). +not_function(F,A):- is_control_structure(F,A). +not_function(A,0):- atom(A),!. +not_function('True',0). +not_function(F,A):- predicate_arity(F,A),AA is A+1, \+ decl_functional_predicate_arg(F,AA,_). + +needs_call_fr(P):- is_function(P,_Nth),functor(P,F,A),AA is A+1, \+ current_predicate(F/AA). + +is_control_structure(F,A):- atom(F), atom_concat('if-',_,F),A>2. + +'=='(A, B, Res):- as_tf(equal_enough(A, B),Res). +'or'(G1,G2):- once((G1 ; G2)). +'or'(G1,G2,Res):- as_tf((G1 ; G2),Res). + +% Function without arguments can be converted directly. +is_arity_0(AsFunction,F):- compound(AsFunction), compound_name_arity(AsFunction,F,0). + +% Determines whether a given term is a function and retrieves the position +% in the predicate where the function Result is stored/retrieved +is_function(AsFunction, _):- is_ftVar(AsFunction),!,fail. +is_function(AsFunction, _):- AsFunction=='$VAR',!, trace, fail. +is_function(AsFunction, Nth) :- is_arity_0(AsFunction,F), \+ not_function(F,0), !,Nth=1. +is_function(AsFunction, Nth) :- is_arity_0(AsFunction,_), !,Nth=1. +is_function(AsFunction, Nth) :- + callable(AsFunction), + functor(AsFunction, Functor, A), + \+ not_function(Functor, A), + AA is A + 1, + functional_predicate_arg_maybe(Functor, AA, Nth). + +functional_predicate_arg_maybe(F, AA, Nth):- functional_predicate_arg(F, AA, Nth),!. +functional_predicate_arg_maybe(F, AA, _):- A is AA - 1,functional_predicate_arg(F,A,_),!,fail. +functional_predicate_arg_maybe(F, Nth, Nth):- asserta(decl_functional_predicate_arg(F, Nth, Nth)),!. + +% -------------------------------- +% FUNCTS_TO_PREDS EXPLANATION +% -------------------------------- + +% functs_to_preds is a predicate that converts all Term functions to their equivalent predicates. +% It takes three arguments - RetResult, which will hold the result of the function evaluation, +% Convert, which is the function that needs to be converted, and Converted, which will hold the equivalent predicate. +% Example: +% +% ?- functs_to_preds(RetResult, is(pi+pi), Converted). +% +% Converted = (pi(_A), +% +(_A, _A, _B), +% _C is _B, +% eval(_C, RetResult)). +% + +functs_to_preds([Eq,H,B],OO):- Eq == '=', compile_for_assert(H, B, OO),!. +functs_to_preds(EqHB,OO):- compile_head_for_assert(EqHB,OO),!. + +functs_to_preds(I,OO):- + sexpr_s2p(I, M), + /*trace,*/ + f2p(_,_,M,O), + expand_to_hb(O,H,B), + head_preconds_into_body(H,B,HH,BB), + OO = (HH:-BB). + + +% ?- compile_for_exec(RetResult, is(pi+pi), Converted). +compile_for_exec(Res,I,BB):- + HeadIs = [exec], + AsBodyFn = I, + compile_for_assert(HeadIs, AsBodyFn, Converted), + (Converted = (exec(Res):- BB)),!, + (portray_clause((Converted))),!. + + +compile_for_exec(Res,I,BB):- + =(I, M), + f2p(exec(),_,(exec()=M),O), + expand_to_hb(O,H,B), + head_preconds_into_body(H,B,HH,BB), + ignore(exec(Res)=HH), + (portray_clause((exec2(Res):- BB))),!. + +compile_for_exec(Res,I,O):- + =(I, M), f2p(exec(),Res,M,O), + (portray_clause((exec1(Res):- O))),!. + + +% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. +compile_head_for_assert(HeadIs, (Head:-Body)):- + compile_head_for_assert(HeadIs, NewHeadIs,Converted), + head_preconds_into_body(NewHeadIs,Converted,Head,Body). + +compile_head_for_assert(HeadIs, NewHeadIs,Converted) :- /*trace,*/ + as_functor_args(HeadIs,F,A,ArgsL), + maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), + as_functor_args(NewHeadIs,F,A,NewArgs), + list_to_conjuncts(CodeForValueL,Converted),!. + + +as_functor_args(AsPred,F,A,ArgsL):- nonvar(AsPred),!,into_list_args(AsPred,[F|ArgsL]),length(ArgsL,A). +as_functor_args(AsPred,F,A,ArgsL):- nonvar(F),length(ArgsL,A),AsPred =~ [F|ArgsL]. + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + (AsBodyFn =@= HeadIs ; AsBodyFn == []), !,/*trace,*/ + compile_head_for_assert(HeadIs,Converted). + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- is_ftVar(AsBodyFn), /*trace,*/ + AsFunction = HeadIs,!, + must_det_ll(( + Converted = (HeadC :- BodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn + %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + f2p(HeadIs,HResult,AsFunction,HHead), + (var(HResult) -> (Result = HResult, HHead = Head) ; + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), + NextBody = u_assign(AsBodyFn,Result), + head_preconds_into_body(Head,NextBody,HeadC,BodyC), + nop(ignore(Result = '$VAR'('HeadRes'))))),!. + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + AsFunction = HeadIs, + must_det_ll(( + Converted = (HeadC :- NextBodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn + %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + f2p(HeadIs,HResult,AsFunction,HHead), + (var(HResult) -> (Result = HResult, HHead = Head) ; + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), + verbose_unify(Convert), + f2p(HeadIs,Result,AsBodyFn,NextBody), + %RetResult = Converted, + %RetResult = _, + head_preconds_into_body(Head,NextBody,HeadC,NextBodyC), + wdmsg([convert(Convert),head_preconds_into_body(HeadC:-NextBodyC)]), + %if_t(((Head:-NextBody)\=@=(HeadC:-NextBodyC)),wdmsg(was(Head:-NextBody))), + + nop(ignore(Result = '$VAR'('HeadRes'))))),!. + +% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + AsFunction = HeadIs, Converted = (HeadCC :- BodyCC), + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + as_functor_args(Head,F,A,ArgsL), + maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), + as_functor_args(HeadC,F,A,NewArgs), + list_to_conjuncts(CodeForValueL,CodeForHeadArgs), + f2p(HeadIs,Result,AsBodyFn,NextBody), + combine_code(CodeForHeadArgs,NextBody,BodyC),!, + head_preconds_into_body(HeadC,BodyC,HeadCC,BodyCC),!. + + +/* +*/ + +head_preconds_into_body(Head,Body,Head,Body):- \+ compound(Head),!. +head_preconds_into_body((PreHead,True),Converted,Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body((True,PreHead),Converted,Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body(PreHead,(True,Converted),Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body(PreHead,(Converted,True),Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body((AsPredO,Pre),Converted,Head,Body):- + head_preconds_into_body(Pre,(AsPredO,Converted),Head,Body). +head_preconds_into_body(AHead,Body,Head,BodyNew):- + assertable_head(AHead,Head), + optimize_body(Head,Body,BodyNew). + +assertable_head(u_assign(FList,R),Head):- FList =~ [F|List], + append(List,[R],NewArgs), atom(F),!, Head=..[F|NewArgs]. +assertable_head(Head,Head). + +optimize_body(_Head,Body,BodyNew):- var(Body),!,Body=BodyNew. +optimize_body(Head,(B1*->B2;B3),(BN1*->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). +optimize_body(Head,(B1->B2;B3),(BN1->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). +optimize_body(Head,(B1,B2),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). +optimize_body(Head,(B2,B1),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). +optimize_body(Head,(B1,B2),(BN1,BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(Head,(B1:-B2),(BN1:-BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(Head,(B1;B2),(BN1;BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(_Head,Body,BodyNew):- Body=BodyNew. + + +compile_test_then_else(RetResult,If,Then,Else,Converted):- + f2p(HeadIs,ThenResult,Then,ThenCode), + f2p(HeadIs,ElseResult,Else,ElseCode), + Converted=(If*->(ThenCode,ThenResult=RetResult);(ElseCode,ElseResult=RetResult)). + +:- discontiguous(compile_flow_control/4). + +compile_flow_control(_HeadIs,_RetResult,Convert,_):- \+ compound(Convert),!,fail. +compile_flow_control(_HeadIs,_RetResult,Convert,_):- compound_name_arity(Convert,_,0),!,fail. +compile_flow_control(HeadIs,RetResult,Convert, (Code1,Eval1Result=Result,Converted)) :- % dif_functors(HeadIs,Convert), + Convert =~ chain(Eval1,Result,Eval2),!, + f2p(HeadIs,Eval1Result,Eval1,Code1), + f2p(HeadIs,RetResult,Eval2,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ if(Cond,Then,Else),!,Test = is_True(CondResult), + f2p(HeadIs,CondResult,Cond,CondCode), + compile_test_then_else(RetResult,(CondCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ 'if-error'(Value,Then,Else),!,Test = is_Error(ValueResult), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ 'if-empty'(Value,Then,Else),!,Test = is_Empty(ValueResult), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + (Convert =~ 'if-non-empty-expression'(Value,Then,Else)),!, + (Test = ( \+ is_Empty(ValueResult))), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['if-equals',Value1,Value2,Then,Else],!,Test = equal_enough(ResValue1,ResValue2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). + +cname_var(Sym,Src):- gensym(Sym,SrcV),Src='$VAR'(SrcV). +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['assertEqual',Value1,Value2],!, + cname_var('Src_',Src), + cname_var('FA_',ResValue1), + cname_var('FA_',ResValue2), + cname_var('FARL_',L1), + cname_var('FARL_',L2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + Converted = + (Src = Convert, + loonit_assert_source_tf(Src, + (findall(ResValue1,CodeForValue1,L1), + findall(ResValue2,CodeForValue2,L2)), + equal_enough(L1,L2),RetResult)). +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['assertEqualToResult',Value1,Value2],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = loonit_assert_source_tf(Convert, + findall(ResValue1,CodeForValue1,L1), + equal_enough(L1,Value2),RetResult). + + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ 'add-atom'(Where,What), !, + =(What,WhatP), + Converted = as_tf('add-atom'(Where,WhatP),RetResult). + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ 'add-atom'(Where,What,RetResult), !, + =(What,WhatP), + Converted = as_tf('add-atom'(Where,WhatP),RetResult). + + +compile_flow_control(HeadIs,RetResult,Convert, (Converted)) :- + Convert =~ ['superpose',UValueL], + maybe_unlistify(UValueL,ValueL,URetResult,RetResult), + maplist(f2p_assign(HeadIs,URetResult),ValueL,CodeForValueL), + list_to_disjuncts(CodeForValueL,Converted),!. + + +maybe_unlistify([UValueL],ValueL,RetResult,[URetResult]):- is_list(UValueL),!, + maybe_unlistify(UValueL,ValueL,RetResult,URetResult). +maybe_unlistify(ValueL,ValueL,RetResult,RetResult). + +list_to_disjuncts([],false). +list_to_disjuncts([A],A):- !. +list_to_disjuncts([A|L],(A;D)):- list_to_disjuncts(L,D). + + +f2p_assign(_HeadIs,V,Value,is_True(V)):- Value=='True'. +f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- \+ compound(Value),!. +f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- is_ftVar(Value),!. +f2p_assign(HeadIs,ValueResult,Value,Converted):- + f2p(HeadIs,ValueResultR,Value,CodeForValue), + %into_equals(ValueResultR,ValueResult,ValueResultRValueResult), + ValueResultRValueResult = (ValueResultR=ValueResult), + combine_code(CodeForValue,ValueResultRValueResult,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, (ValueCode, Converted)) :- + Convert =~ ['case',Value|Options], + \+ is_ftVar(Value),!, + cname_var('CASE_EVAL_',ValueResult), + ConvertCases =~ ['case',ValueResult|Options], + compile_flow_control(HeadIs,RetResult,ConvertCases, Converted), + f2p(HeadIs,ValueResult,Value,ValueCode). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',Value,[Opt|Options]],nonvar(Opt),!, + must_det_ll(( + compile_case_bodies(HeadIs,Opt,caseStruct(Value,If,RetResult,Then)), + Converted = ( If -> Then ; Else ), + ConvertCases =~ ['case',Value,Options], + compile_flow_control(HeadIs,RetResult,ConvertCases,Else))). + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',_Value,[]],!,Converted = (fail,RetResult=[]),!. + +/* +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',Value,Options],!, + must_det_ll(( + maplist(compile_case_bodies(HeadIs),Options,Cases), + Converted = + (( AllCases = Cases, + once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), + (MatchCode,unify_enough(Value,MatchVar)))), + (BodyCode), + BodyResult=RetResult)))). + +compile_flow_control(HeadIs,_,Convert, Converted) :- + Convert =~ ['case',Value,Options,RetResult],!, + must_det_ll(( + f2p(HeadIs,ValueResult,Value,ValueCode), + maplist(compile_case_bodies(HeadIs),Options,Cases), + Converted = + (( AllCases = Cases, + call(ValueCode), + once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), + both_of(ValueResult,MatchCode,unify_enough(ValueResult,MatchVar)))), + call(BodyCode), + BodyResult=RetResult)))). + + +both_of(Var,G1,G2):- nonvar(Var),!,call(G2),call(G1). +both_of(_Var,G1,G2):- call(G1),call(G2). + +*/ + +compile_case_bodies(HeadIs,[Match,Body],caseStruct(_,true,BodyResult,BodyCode)):- Match == '%void%',!, + f2p(HeadIs,BodyResult,Body,BodyCode). +compile_case_bodies(HeadIs,[Match,Body],caseStruct(MatchResult,If,BodyResult,BodyCode)):- !, + f2p(HeadIs,MatchResultV,Match,MatchCode), + combine_code(MatchCode,unify_enough(MatchResult,MatchResultV),If), + f2p(HeadIs,BodyResult,Body,BodyCode). +compile_case_bodies(HeadIs,MatchBody,CS):- compound(MatchBody), MatchBody =~ MB,compile_case_bodies(HeadIs,MB,CS). + +compile_flow_control(HeadIs,RetResult,Convert,CodeForValueConverted) :- + Convert =~ [Plus,N,Value], atom(Plus), current_predicate(Plus/3), number(N), \+ number(Value), \+ is_ftVar(Value),!, + f2p(HeadIs,ValueResult,Value,CodeForValue),!, + Converted =.. [Plus,N,ValueResult,RetResult], + combine_code(CodeForValue,Converted,CodeForValueConverted). + +compound_equals(COL1,COL2):- COL1=@=COL2,!,COL1=COL2. +compound_equals(COL1,COL2):- compound_equals1(COL1,COL2). +compound_equals1(COL1,COL2):- is_ftVar(COL1),!,is_ftVar(COL2),ignore(COL1=COL2),!. +compound_equals1(COL1,COL2):- compound(COL1),!,compound(COL2), COL1=COL2. + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['superpose',COL],compound_equals(COL,'collapse'(Value1)), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = (findall(ResValue1,CodeForValue1,Gathered),member(RetResult,Gathered)). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['collapse',Value1],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = (findall(ResValue1,CodeForValue1,RetResult)). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['compose',Value1],!, + Convert2 =~ ['collapse',Value1],!, + compile_flow_control(HeadIs,RetResult,Convert2, Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['unify',Value1,Value2,Then,Else],!,Test = metta_unify(ResValue1,ResValue2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['let',Var,Value1,Body],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,RetResult,Body,BodyCode), + into_equals(Var,ResValue1,VarResValue1), + list_to_conjuncts([CodeForValue1,VarResValue1,BodyCode],Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['let*',Bindings,Body],!, + must_det_ll(( + maplist(compile_let_star(HeadIs),Bindings,CodeList), + list_to_conjuncts(CodeList,BindingCode), + f2p(HeadIs,RetResult,Body,BodyCode), + combine_code(BindingCode,BodyCode,Converted))). + + compile_let_star(HeadIs,NV,Converted):- + must_det_ll((NV =~ [Expression,Var], + (var(Var)-> f2p(HeadIs,Var,Expression,Converted); + (var(Expression)-> f2p(HeadIs,Expression,Var,Converted); + (f2p(HeadIs,Eval1Result,Expression,Code), + into_equals(Eval1Result,Var,Eval1ResultVar), + combine_code(Code,Eval1ResultVar,Converted)))))). + + + +% match('&self',f(1)=Y,Y) +compile_flow_control(HeadIs,Y,Convert,Converted) :- dif_functors(HeadIs,Convert), + Convert=~ match('&self',AsFunctionY,YY), nonvar(AsFunctionY),( AsFunctionY =~ (AsFunction=Y)), nonvar(AsFunction), + !, Y==YY, + f2p(HeadIs,Y,AsFunction,Converted),!. + +compile_flow_control(HeadIs,RetResult,Convert,Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['match',_Self,Pattern,Template],!, + f2p(HeadIs,_,Pattern,PatternCode), + f2p(HeadIs,RetResult,Template,TemplateCode), + combine_code(PatternCode,TemplateCode,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['match',_Self,Pattern,Template],!, + must_det_ll(( + f2p(HeadIs,_,Pattern,PatternCode), + into_equals(RetResult,Template,TemplateCode), + combine_code(PatternCode,TemplateCode,Converted))). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['if-decons',Atom,Head,Tail,Then,Else],!,Test = unify_cons(AtomResult,ResHead,ResTail), + f2p(HeadIs,AtomResult,Atom,AtomCode), + f2p(HeadIs,ResHead,Head,CodeForHead), + f2p(HeadIs,ResTail,Tail,CodeForTail), + compile_test_then_else(RetResult,(AtomCode,CodeForHead,CodeForTail,Test),Then,Else,Converted). + + + +compile_flow_control(_HeadIs,RetResult,Convert,is_True(RetResult)) :- is_compiled_and(AND), + Convert =~ [AND],!. + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body],!, + f2p(HeadIs,RetResult,Body,BodyCode), + compile_test_then_else(RetResult,BodyCode,'True','False',Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2],!, + f2p(HeadIs,B1Res,Body1,Body1Code), + f2p(HeadIs,RetResult,Body2,Body2Code), + into_equals(B1Res,'True',AE), + Converted = (Body1Code,AE,Body2Code),!. + + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2],!, + f2p(HeadIs,B1Res,Body1,Body1Code), + f2p(HeadIs,_,Body2,Body2Code), + into_equals(B1Res,'True',AE), + compile_test_then_else(RetResult,(Body1Code,AE,Body2Code),'True','False',Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2|BodyMore],!, + And2 =~ [AND,Body2|BodyMore], + Next =~ [AND,Body1,And2], + compile_flow_control(HeadIs,RetResult, Next, Converted). + +compile_flow_control(HeadIs,RetResult,sequential(Convert), Converted) :- !, + compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted). + +compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted,Code) :- !, + maplist(each_result(HeadIs,RetResult),Convert, Converted), + list_to_disjuncts(Converted,Code). + + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ if(Cond,Then),!, + f2p(HeadIs,CondResult,Cond,CondCode), + f2p(HeadIs,RetResult,Then,ThenCode), + Converted = ((CondCode,is_True(CondResult)),ThenCode). + +each_result(HeadIs,RetResult,Convert,Converted):- + f2p(HeadIs,OneResult,Convert,Code1), + into_equals(OneResult,RetResult,Code2), + combine_code(Code1,Code2,Converted). + +compile_flow_control(HeadIs,RetResult,Converter, Converted):- de_eval(Converter,Convert),!, + compile_flow_control(HeadIs,RetResult,Convert, Converted). + +compile_flow_control(HeadIs,_Result,Convert, Converted) :- fail, + functor(Convert,Func,PA), + functional_predicate_arg(Func,PA,Nth), + Convert =~ [Func|PredArgs], + nth1(Nth,PredArgs,Result,FuncArgs), + RetResult = Result, + AsFunct =~ [Func|FuncArgs], + compile_flow_control(HeadIs,RetResult,AsFunct, Converted). + +dif_functors(HeadIs,_):- var(HeadIs),!,fail. +dif_functors(HeadIs,_):- \+ compound(HeadIs),!. +dif_functors(HeadIs,Convert):- compound(HeadIs),compound(Convert), + compound_name_arity(HeadIs,F,A),compound_name_arity(Convert,F,A). + +is_compiled_and(AND):- member(AND,[ (','), ('and')]). + +flowc. + + + :- discontiguous f2p/4. + +f2p(_HeadIs,Convert, Convert, true) :- + (is_ftVar(Convert);number(Convert)),!.% Check if Convert is a variable + +% If Convert is a variable, the corresponding predicate is just eval(Convert, RetResult) +f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- + is_ftVar(Convert),!,% Check if Convert is a variable + into_equals(RetResult,Convert,RetResultConverted). + % Converted = eval(Convert, RetResult). % Set Converted to eval(Convert, RetResult) +f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- + number(Convert),!,into_equals(RetResult,Convert,RetResultConverted). + +f2p(_HeadIs,RetResult,Convert, Converted) :- % HeadIs\=@=Convert, + is_arity_0(Convert,F), !, Converted = u_assign([F],RetResult),!. + + + +/*f2p(HeadIs,RetResult, ConvertL, (Converted,RetResultL=RetResult)) :- is_list(ConvertL), + maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), + list_to_conjuncts(ConvertedL,Converted).*/ + +% If Convert is an "eval" function, we convert it to the equivalent "is" predicate. +f2p(HeadIs,RetResult,EvalConvert,Converted):- EvalConvert =~ eval(Convert), !, + must_det_ll((f2p(HeadIs,RetResult,Convert, Converted))). + +f2p(HeadIs,RetResult,Convert, Converted):- + compound(Convert), \+ compound_name_arity(Convert,_,0), + compile_flow_control(HeadIs,RetResult,Convert, Converted),!. + +f2p(HeadIs,RetResult,Convert, Converted):- + compound(Convert), Convert = u_assign(C, Var), compound_non_cons(C),into_list_args(C,CC),!, + f2p(HeadIs,RetResult,u_assign(CC, Var), Converted). + +f2p(_HeadIs,_RetResult,Convert, Converted):- + compound(Convert), Convert = u_assign(C, _Var), is_list(C),Converted = Convert,!. + +f2p(HeadIs,RetResult,Convert, Converted) :- + atom(Convert), functional_predicate_arg(Convert,Nth,Nth2), + Nth==1,Nth2==1, + HeadIs\=@=Convert, + Convert = F,!, + must_det_ll(( + do_predicate_function_canonical(FP,F), + compound_name_list(Converted,FP,[RetResult]))). + +% If Convert is a number or an atom, it is considered as already converted. +f2p(_HeadIs,RetResult, Convert, RetResult = Convert) :- % HeadIs\=@=Convert, + once(number(Convert); atom(Convert); data_term(Convert)), % Check if Convert is a number or an atom + !. % Set RetResult to Convert as it is already in predicate form + +% If Convert is an "is" function, we convert it to the equivalent "is" predicate. +f2p(HeadIs,RetResult,is(Convert),(Converted,is(RetResult,Result))):- !, + must_det_ll((f2p(HeadIs,Result,Convert, Converted))). + +% If Convert is an "or" function, we convert it to the equivalent ";" (or) predicate. +f2p(HeadIs,RetResult,or(AsPredI,Convert), or(AsPredO, Converted)) :- !, + must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). +f2p(HeadIs,RetResult,(AsPredI; Convert), (AsPredO; Converted)) :- !, + must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). + +% If Convert is a "," (and) function, we convert it to the equivalent "," (and) predicate. +f2p(HeadIs,RetResult,(AsPredI, Convert), (AsPredO, Converted)) :- !, + must_det_ll((f2p(HeadIs,_RtResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). + +% If Convert is a ":-" (if) function, we convert it to the equivalent ":-" (if) predicate. +f2p(_HeadIs,RetResult, Convert, Converted) :- Convert =(H:-B),!, + RetResult=(H:-B), Converted = true. + +f2p(_HeadIs,_RetResult, N=V, Code) :- !, into_equals(N,V,Code). + + +into_equals(RetResultL,RetResult,Equals):- into_u_assign(RetResultL,RetResult,Equals). +into_u_assign(RetResultL,RetResult,true):- is_ftVar(RetResultL), is_ftVar(RetResult), RetResult=RetResultL,!. +into_u_assign(RetResultL,RetResult,Code):- var(RetResultL), Code = u_assign(RetResult,RetResultL). +into_u_assign(RetResultL,RetResult,Code):- Code = u_assign(RetResultL,RetResult). + + + +% If Convert is a list, we convert it to its termified form and then proceed with the functs_to_preds conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- is_list(Convert), + once((sexpr_s2p(Convert,IS), \+ IS=@=Convert)), !, % Check if Convert is a list and not in predicate form + must_det_ll((f2p(HeadIs,RetResult, IS, Converted))). % Proceed with the conversion of the predicate form of the list. + +f2p(HeadIs,RetResult, ConvertL, Converted) :- is_list(ConvertL), + maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), + list_to_conjuncts(ConvertedL,Conjs), + into_u_assign(RetResultL,RetResult,Code), + combine_code(Conjs,Code,Converted). + + + +f2p(HeadIs,RetResultL, ConvertL, Converted) :- is_list(ConvertL), + ConvertL = [Convert], + f2p(HeadIs,RetResult,Convert, Code),!, + into_equals(RetResultL,[RetResult],Equals), + combine_code(Code,Equals,Converted). + + +% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert + % sub_term(AsFunction, Convert), AsFunction\==Convert, + callable(AsFunction), % Check if AsFunction is callable + compile_flow_control(HeadIs,Result,AsFunction, AsPred), + HeadIs\=@=AsFunction,!, + subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult,(AsPred,Converting), Converted). % Proceed with the conversion of the remaining terms + +% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert + callable(AsFunction), % Check if AsFunction is callable + is_function(AsFunction, Nth), % Check if AsFunction is a function and get the position Nth where the result is stored/retrieved + HeadIs\=@=AsFunction, + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred + subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms + +% If AsFunction is a recognized function, convert it to a predicate. +f2p(HeadIs,RetResult,AsFunction,AsPred):- % HeadIs\=@=AsFunction, + is_function(AsFunction, Nth), % Check if AsFunction is a recognized function and get the position Nth where the result is stored/retrieved + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, RetResult, Nth, AsPred), + \+ ( compound(AsFunction), arg(_,AsFunction, Arg), is_function(Arg,_)),!. + +% If any sub-term of Convert is an eval/2, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm0(ConvertFunction, Convert), % Get the deepest sub-term AsFunction of Convert + callable(ConvertFunction), % Check if AsFunction is callable + ConvertFunction = eval(AsFunction,Result), + ignore(is_function(AsFunction, Nth)), + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred + subst(Convert, ConvertFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms + +/* MAYBE USE ? +% If Convert is a compound term, we need to recursively convert its arguments. +f2p(HeadIs,RetResult, Convert, Converted) :- fail, + compound(Convert), !, + Convert =~ [Functor|Args], % Deconstruct Convert to functor and arguments + maplist(convert_argument, Args, ConvertedArgs), % Recursively convert each argument + Converted =~ [Functor|ConvertedArgs], % Reconstruct Converted with the converted arguments + (callable(Converted) -> f2p(HeadIs,RetResult, Converted, _); true). % If Converted is callable, proceed with its conversion +% Helper predicate to convert an argument of a compound term +convert_argument(Arg, ConvertedArg) :- + (callable(Arg) -> ftp(_, _, Arg, ConvertedArg); ConvertedArg = Arg). +*/ + +% The catch-all If no specific case is matched, consider Convert as already converted. +f2p(_HeadIs,_RetResult,u_assign(Convert,Res), u_assign(Convert,Res)):-!. +f2p(_HeadIs,RetResult,Convert, Code):- into_u_assign(Convert,RetResult,Code). + + + +data_term(Convert):- self_eval(Convert),!. + + +de_eval(eval(X),X):- compound(X),!. + +call1(G):- call(G). +call2(G):- call(G). +call3(G):- call(G). +call4(G):- call(G). +call5(G):- call(G). + +trace_break:- trace,break. + +u_assign(FList,R):- var(FList),nonvar(R), !, u_assign(R,FList). +u_assign(FList,R):- FList=@=R,!,FList=R. +u_assign(FList,R):- number(FList), var(R),!,R=FList. +u_assign(FList,R):- self_eval(FList), var(R),!,R=FList. +u_assign(FList,R):- var(FList),!,/*trace,*/freeze(FList,u_assign(FList,R)). +u_assign([V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(_Eq,V),!,maplist(eval_args,VI,VO). +u_assign((F:-List),R):- !, R = (F:-List). +u_assign(FList,R):- \+ compound(FList), var(R),!,R=FList. +u_assign([F|List],R):- F == ':-',!, trace_break,as_tf(clause(F,List),R). +u_assign([F|List],R):- atom(F),append(List,[R],ListR), + catch(quietly(apply(F,ListR)),error(existence_error(procedure,F/_),_), + catch(quietly(as_tf(apply(F,List),R)),error(existence_error(procedure,F/_),_), + quietly(catch(eval_args([F|List],R),_, R=[F|List])))),!. +u_assign(FList,RR):- iz_conz(FList),!,as_tf(FList,RR). +u_assign(FList,RR):- (compound_non_cons(FList),u_assign_c(FList,RR))*->true;FList=~RR. + +u_assign_c(FList,RR):- + functor(FList,F,_), + (catch(quietlY(call(FList,R)),error(existence_error(procedure,F/_),_), + catch(quietlY(as_tf(FList,R)),error(existence_error(procedure,F/_),_), + quietlY((p2m(FList,[F|List]),catch(eval_args([F|List],R),_, R=~[F|List])))))),!,R=RR. +u_assign_c(FList,R):- compound(FList), FList=~R. + +quietlY(G):- call(G). + +call_fr(G,Result,FA):- current_predicate(FA),!,call(G,Result). +call_fr(G,Result,_):- Result=G. + +% This predicate is responsible for converting functions to their equivalent predicates. +% It takes a function 'AsFunction' and determines the predicate 'AsPred' which will be +% equivalent to the given function, placing the result of the function at the 'Nth' position +% of the predicate arguments. The 'Result' will be used to store the result of the 'AsFunction'. +% +% It handles cases where 'AsFunction' is a variable and when it's an atom or a compound term. +% For compound terms, it decomposes them to get the functor and arguments and then reconstructs +% the equivalent predicate with the 'Result' at the 'Nth' position. +% +% Example: +% funct_with_result_is_nth_of_pred(HeadIs,+(1, 2), Result, 3, +(1, 2, Result)). + +into_callable(Pred,AsPred):- is_ftVar(Pred),!,AsPred=holds(Pred). +into_callable(Pred,AsPred):- Pred=AsPred,!. +into_callable(Pred,AsPred):- iz_conz(Pred), !,AsPred=holds(Pred). +into_callable(Pred,AsPred):- Pred=call_fr(_,_,_),!,AsPred=Pred. +into_callable(Pred,AsPred):- Pred =~ Cons, !,AsPred=holds(Cons). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + var(AsPred),!, + funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, Pred), + into_callable(Pred,AsPred). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + var(AsFunction),!, + funct_with_result_is_nth_of_pred0(HeadIs,Function, Result, Nth, AsPred), + into_callable(Function,AsFunction). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). + +% Handles the case where AsFunction is a variable. +% It creates a compound term 'AsPred' and places the 'Result' at the 'Nth' position +% of the predicate arguments, and the 'AsFunction' represents the functional form with +% arguments excluding the result. +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, AsPred) :- + is_ftVar(AsFunction),!, + compound(AsPred), + compound_name_list(AsPred,FP,PredArgs), + nth1(Nth,PredArgs,Result,FuncArgs), + do_predicate_function_canonical(FP,F), + AsFunction =~ [F,FuncArgs]. + +% Handles the case where 'AsFunction' is not a variable. +% It decomposes 'AsFunction' to get the functor and arguments (FuncArgs) of the function +% and then it constructs the equivalent predicate 'AsPred' with 'Result' at the 'Nth' +% position of the predicate arguments. +funct_with_result_is_nth_of_pred0(HeadIs,AsFunctionO, Result, Nth, (AsPred)) :- + de_eval(AsFunctionO,AsFunction),!,funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). + +funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, _Nth, AsPred) :- + nonvar(AsFunction), + compound(AsFunction), + \+ is_arity_0(AsFunction,_), + functor(AsFunction,F,A), + HeadIs\=@=AsFunction, + \+ (compound(HeadIs), (is_arity_0(HeadIs,HF);functor(HeadIs,HF,_))-> HF==F), + (into_u_assign(AsFunction, Result,AsPred) + -> true + ; (AA is A+1, + (FAA=(F/AA)), + \+ current_predicate(FAA), !, + AsPred = call_fr(AsFunction,Result,FAA))). + + +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- + (atom(AsFunction)->AsFunction =~ [F | FuncArgs]; compound_name_list(AsFunction,F,FuncArgs)), + ignore(var(Nth) -> is_function(AsFunction,Nth); true), + nth1(Nth, PredArgs, Result, FuncArgs), % It places 'Result' at the 'Nth' position + AA is Nth+1, \+ current_predicate(F/AA), + do_predicate_function_canonical(FP,F), + AsPred =~ [FP | PredArgs]. % It forms the predicate 'AsPred' by joining the functor with the modified arguments list. + + + +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- + nonvar(AsFunction), + AsFunction =~ [F | FuncArgs], + do_predicate_function_canonical(FP,F), + length(FuncArgs, Len), + ignore(var(Nth) -> is_function(AsFunction,Nth); true), + ((number(Nth),Nth > Len + 1) -> throw(error(index_out_of_bounds, _)); true), + (var(Nth)->(between(1,Len,From1),Nth is Len-From1+1);true), + nth1(Nth,PredArgs,Result,FuncArgs), + AsPred =~ [FP | PredArgs]. + +% optionally remove next line +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, _, _, _) :- + var(AsFunction), + throw(error(instantiation_error, _)). + +% The remove_funct_arg/3 predicate is a utility predicate that removes +% the Nth argument from a predicate term, effectively converting a +% predicate to a function. The first argument is the input predicate term, +% the second is the position of the argument to be removed, and the third +% is the output function term. +remove_funct_arg(AsPred, Nth, AsFunction) :- + % Decompose AsPred into its functor and arguments. + AsPred =~ [F | PredArgs], + % Remove the Nth element from PredArgs, getting the list FuncArgs. + nth1(Nth,PredArgs,_Result,FuncArgs), + % Construct AsFunction using the functor and the list FuncArgs. + do_predicate_function_canonical(F,FF), + compound_name_list(AsFunction,FF,FuncArgs). + +% rev_sub_sterm/2 predicate traverses through a given Term +% and finds a sub-term within it. The sub-term is unifiable with ST. +% This is a helper predicate used in conjunction with others to inspect +% and transform terms. + +rev_sub_sterm(ST, Term):- rev_sub_sterm0(ST, Term), ST\=@=Term. +rev_sub_sterm0(_, Term):- never_subterm(Term),!,fail. +rev_sub_sterm0(ST, Term):- Term =~ if(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'if-error'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'if-decons'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'chain'(Expr,_Var,_Next),!,rev_sub_sterm0(ST, Expr). +rev_sub_sterm0(ST, Term):- + % If Term is a list, it reverses the list and searches for a member + % in the reversed list that is unifiable with ST. + is_list(Term),!,rev_member(E,Term),rev_sub_sterm0(ST, E). +rev_sub_sterm0(ST, Term):- + % If Term is a compound term, it gets its arguments and then recursively + % searches in those arguments for a sub-term unifiable with ST. + compound(Term), compound_name_list(Term,_,Args),rev_sub_sterm0(ST, Args). +rev_sub_sterm0(ST, ST):- + % If ST is non-var, not an empty list, and callable, it unifies + % ST with Term if it is unifiable. + nonvar(ST), ST\==[], callable(ST). + +never_subterm(Term):- is_ftVar(Term). +never_subterm([]). +never_subterm('Nil'). +%never_subterm(F):- atom(F),not_function(F,0). + +% rev_member/2 predicate is a helper predicate used to find a member +% of a list. It is primarily used within rev_sub_sterm/2 to +% traverse through lists and find sub-terms. It traverses the list +% from the end to the beginning, reversing the order of traversal. +rev_member(E,[_|L]):- rev_member(E,L). +rev_member(E,[E|_]). + +% Continuing from preds_to_functs/2 +% Converts a given predicate representation to its equivalent function representation +preds_to_functs(Convert, Converted):- + % Verbose_unify/1 here may be used for debugging or to display detailed unification information + verbose_unify(Convert), + % Calls the auxiliary predicate preds_to_functs0/2 to perform the actual conversion + preds_to_functs0(Convert, Converted). + +% if Convert is a variable, Converted will be the same variable +preds_to_functs0(Convert, Converted) :- + is_ftVar(Convert), !, + Converted = Convert. + +% Converts the rule (Head :- Body) to its function equivalent +preds_to_functs0((Head:-Body), Converted) :- !, + % The rule is converted by transforming Head to a function AsFunction and the Body to ConvertedBody + ( + pred_to_funct(Head, AsFunction, Result), + %ignore(Result = '$VAR'('HeadRes')), + conjuncts_to_list(Body,List), + reverse(List,RevList),append(Left,[BE|Right],RevList), + compound(BE),arg(Nth,BE,ArgRes),sub_var(Result,ArgRes), + remove_funct_arg(BE, Nth, AsBodyFunction), + append(Left,[eval(AsBodyFunction,Result)|Right],NewRevList), + reverse(NewRevList,NewList), + list_to_conjuncts(NewList,NewBody), + preds_to_functs0(NewBody,ConvertedBody), + % The final Converted term is constructed + into_equals(AsFunction,ConvertedBody,Converted)). + +% Handles the case where Convert is a conjunction, and AsPred is not not_function. +% It converts predicates to functions inside a conjunction +preds_to_functs0((AsPred, Convert), Converted) :- + \+ not_function(AsPred), + pred_to_funct(AsPred, AsFunction, Result), + sub_var(Result, Convert), !, + % The function equivalent of AsPred replaces Result in Convert + subst(Convert, Result, AsFunction, Converting), + preds_to_functs0(Converting, Converted). + +% Handles the special case where eval/2 is used and returns the function represented by the first argument of eval/2 +preds_to_functs0(eval(AsFunction, _Result), AsFunction) :- !. + +% Handles the general case where Convert is a conjunction. +% It converts the predicates to functions inside a conjunction +preds_to_functs0((AsPred, Converting), (AsPred, Converted)) :- !, + preds_to_functs0(Converting, Converted). + +% Handles the case where AsPred is a compound term that can be converted to a function +preds_to_functs0(AsPred, eval(AsFunction, Result)) :- + pred_to_funct(AsPred, AsFunction, Result), !. + +% any other term remains unchanged +preds_to_functs0(X, X). + +% Converts a given predicate AsPred to its equivalent function term AsFunction +pred_to_funct(AsPred, AsFunction, Result) :- + compound(AsPred), % Checks if AsPred is a compound term + functor(AsPred, F, A), % Retrieves the functor F and arity A of AsPred + functional_predicate_arg(F, A, Nth),!, % Finds the Nth argument where the result should be + arg(Nth, AsPred, Result), % Retrieves the result from the Nth argument of AsPred + remove_funct_arg(AsPred, Nth, AsFunction). % Constructs the function AsFunction by removing the Nth argument from AsPred + +% If not found in functional_predicate_arg/3, it tries to construct AsFunction by removing the last argument from AsPred +pred_to_funct(AsPred, AsFunction, Result) :- + compound(AsPred), !, + functor(AsPred, _, Nth), + arg(Nth, AsPred, Result), + remove_funct_arg(AsPred, Nth, AsFunction). + +% body_member/4 is utility predicate to handle manipulation of body elements in the clause, but the exact implementation details and usage are not provided in the given code. +body_member(Body,BE,NewBE,NewBody):- + conjuncts_to_list(Body,List), + reverse(List,RevList),append(Left,[BE|Right],RevList), + append(Left,[NewBE|Right],NewRevList), + reverse(NewRevList,NewList), + list_to_conjuncts(NewList,NewBody). + + + +% p2m/2 is a translation utility to convert Prolog constructs to MeTTa constructs. +% It handles a variety of cases, including different types of compound terms, +% control structures, and predicate definitions. +% The first argument is the input in Prolog syntax, +% and the second argument is the output converted to MeTTa syntax. +p2m(NC, NC) :- var(NC), !. % If NC is a variable, do not translate. +p2m(NC, NC) :- is_ftVar(NC), !. % If NC is a free term variable, do not translate. +% Conversion for lists +p2m([], 'Nil'). % empty list +p2m([H|T], 'Cons'(OH, OT)):- p2m(H, OH), p2m(T, OT). +p2m(NC, OO) :- + % If NC is a list, map each element of the list from Prolog to MeTTa + is_list(NC),!, + maplist(p2m, NC, OO). +p2m(!, '!'). % Translate the cut operation directly. +p2m(false, 'False'). +p2m(fail, 'False'). % Translate Prolog’s fail to MeTTa’s False. +p2m(true, 'True'). % Translate Prolog’s true to MeTTa’s True. +p2m(prolog, meTTa). % Translate the atom prolog to meTTa. + +p2m('[|]','Cons'). +p2m(( ';' ),or). +%p2m(( ',' ),and). +%p2m(( '\\+' ),unless). +%p2m(( ':-' ),entailed_by). +p2m('=..','atom_2_list'). + +% Conversion for any atomic term +p2m(A, A):- atomic(A). + +p2m(NC,NC):- \+ compound(NC),!. +p2m(NC,[F]):- compound_name_arity(NC,F,0),!. + +% Conversion for the negation as failure +p2m((\+ A), O):- !, p2m(not(A), O). + +% Conversion for arithmetic evaluation +%p2m(is(A, B), O):- !, p2m(eval(B, A), O). +%p2m(is(V,Expr),let(V,Expr,'True')). +p2m((Head:-Body),O):- Body == true,!, O = (=(Head,'True')). +p2m((Head:-Body),O):- Body == fail,!, O = (=(Head,'False')). +p2m((Head:-Body),O):- conjuncts_to_list(Body,List),into_sequential(List,SP),!,O=(=(Head,SP)). + +p2m((G,E),O):- conjuncts_to_list((G,E),List),into_sequential(List,O),!. +% Conversion for if-then-else constructs +p2m((A->B;C),O):- !, p2m(if_then_else(A,B,C),O). +p2m((A;B),O):- !, p2m(or(A,B),O). +p2m((A*->B;C),O):- !, p2m(each_then_otherwise(A,B,C),O). +p2m((A->B),O):- !, p2m(if_then(A,B),O). +p2m((A*->B),O):- !, p2m(each_then(A,B),O). +p2m(metta_defn(Eq,Self,H,B),'add-atom'(Self,[Eq,H,B])). +p2m(metta_type,'add-atom'). +p2m(get_metta_atom,'add-atom'). +p2m(retractall(X),'remove-all-atoms'('&self',X)). +p2m(clause(H,B),'get-atoms'('&self',[=,H,B])). +p2m(retract(X),'remove-atom'('&self',X)). +p2m(assert(X),'add-atom'('&self',X)). +% The catch-all case for the other compound terms. +p2m(I,O):- I=..[F|II],maplist(p2m,[F|II],OO),O=..OO. + +% It will break down compound terms into their functor and arguments and apply p2m recursively +p2m(I, O):- + compound(I), + I =.. [F|II], % univ operator to convert between a term and a list consisting of functor name and arguments + maplist(p2m, II, OO), % applying p2m recursively on each argument of the compound term + sexpr_s2p([F|OO],O). % constructing the output term with the converted arguments + +% In the context of this conversion predicate, each branch of the p2m predicate +% is handling a different type or structure of term, translating it into its +% equivalent representation in another logic programming language named MeTTa. +% The actual transformations are dependent on the correspondence between Prolog +% constructs and MeTTa constructs, as defined by the specific implementations +% of Prolog and MeTTa being used. +prolog_to_metta(V, D) :- + % Perform the translation from Prolog to MeTTa + p2m(V, D),!. + + +% Define predicates to support the transformation from Prolog to MeTTa syntax +% (Continuing the translation from Prolog to MeTTa syntax as per the given code) +% Handle the case where the body is a conjunction of terms +into_sequential(Body, SP) :- + % Check if Body is not a list and convert conjunctions in Body to a list of conjuncts. + \+ is_list(Body), + conjuncts_to_list(Body, List), % Converts a list of conjunctions into a sequential representation in MeTTa + into_sequential(List, SP), !. +into_sequential(Nothing,'True'):- Nothing ==[],!. + % If there's only one element +into_sequential([SP],O):- prolog_to_metta(SP,O). +% Otherwise, construct sequential representation using AND. +into_sequential(List, [AND|SPList]) :- is_compiled_and(CAND),CAND==AND, maplist(prolog_to_metta, List, SPList),!. + + + +% combine_clauses/3 is the main predicate combining clauses with similar heads and bodies. +% HeadBodiesList is a list of clauses (Head:-Body) +% NewHead will be the generalized head representing all clauses in HeadBodiesList +% NewCombinedBodies will be the combined bodies of all clauses in HeadBodiesList. +combine_clauses(HeadBodiesList, NewHead, NewCombinedBodies) :- + % If HeadBodiesList is empty, then NewCombinedBodies is 'false' and NewHead is an anonymous variable. + (HeadBodiesList = [] -> NewCombinedBodies = false, NewHead = _ ; + % Find all Heads in HeadBodiesList and collect them in the list Heads + findall(Head, member((Head:-_), HeadBodiesList), Heads), + % Find the least general head among the collected Heads + least_general_head(Heads, LeastHead), + functor(LeastHead,F,A),functor(NewHead,F,A), + % Transform and combine bodies according to the new head found + transform_and_combine_bodies(HeadBodiesList, NewHead, NewCombinedBodies)), + \+ \+ ( + Print=[converting=HeadBodiesList,newHead=NewHead], + numbervars(Print,0,_,[]),wdmsg(Print),in_cmt(portray_clause(( NewHead :- NewCombinedBodies)))),!. + +% Predicate to find the least general unified head (LGU) among the given list of heads. +% Heads is a list of head terms, and LeastGeneralHead is the least general term that unifies all terms in Heads. +least_general_head(Heads, LeastGeneralHead) :- + lgu(Heads, LeastGeneralHead). + +% the LGU of a single head is the head itself. +lgu([Head], Head) :- !. +% find the LGU of the head and the rest of the list. +lgu([H1|T], LGU) :- + lgu(T, TempLGU), + % Find generalization between head H1 and temporary LGU + generalization(H1, TempLGU, LGU). + +% generalization/3 finds the generalization of two heads, Head1 and Head2, which is represented by GeneralizedHead. +% This predicate is conceptual and will require more complex processing depending on the actual structures of the heads. +generalization(Head1, Head2, GeneralizedHead) :- + % Ensure the functor names and arities are the same between Head1 and Head2. + functor(Head1, Name, Arity), + functor(Head2, Name, Arity), + functor(GeneralizedHead, Name, Arity), + % Generalize the arguments of the heads. + generalize_args(Arity, Head1, Head2, GeneralizedHead). + +% no more arguments to generalize. +generalize_args(0, _, _, _) :- !. +% generalize the corresponding arguments of the heads. +generalize_args(N, Head1, Head2, GeneralizedHead) :- + arg(N, Head1, Arg1), + arg(N, Head2, Arg2), + % If the corresponding arguments are equal, use them. Otherwise, create a new variable. + (Arg1 = Arg2 -> arg(N, GeneralizedHead, Arg1); arg(N, GeneralizedHead, _)), + % Continue with the next argument. + N1 is N - 1, + generalize_args(N1, Head1, Head2, GeneralizedHead). + +% transform_and_combine_bodies/3 takes a list of clause heads and bodies, a new head, and produces a combined body representing all the original bodies. +% The new body is created according to the transformations required by the new head. +transform_and_combine_bodies([(Head:-Body)|T], NewHead, CombinedBodies) :- + % Transform the body according to the new head. + transform(Head, NewHead, Body, TransformedBody), + % Combine the transformed body with the rest. + combine_bodies(T, NewHead, TransformedBody, CombinedBodies). + +/* OLD +% Define predicate combine_clauses to merge multiple Prolog clauses with the same head. +% It receives a list of clauses as input and returns a combined clause. +combine_clauses([Clause], Clause) :- !. % If there's only one clause, return it as is. +combine_clauses(Clauses, (Head :- Body)) :- % If there are multiple clauses, combine them. + Clauses = [(Head :- FirstBody)|RestClauses], % Decompose the list into the first clause and the rest. + combine_bodies(RestClauses, FirstBody, Body). % Combine the bodies of all the clauses. + +% Helper predicate to combine the bodies of a list of clauses. +% The base case is when there are no more clauses to combine; the combined body is the current body. +combine_bodies([], Body, Body). +combine_bodies([(Head :- CurrentBody)|RestClauses], PrevBody, Body) :- + % Combine the current body with the previous body using a conjunction (,). + combine_two_bodies(PrevBody, CurrentBody, CombinedBody), + % Recursively combine the rest of the bodies. + combine_bodies(RestClauses, CombinedBody, Body). + +% Predicate to combine two bodies. +% Handles the combination of different Prolog constructs like conjunctions, disjunctions, etc. +combine_two_bodies((A, B), (C, D), (A, B, C, D)) :- !. % Combine conjunctions. +combine_two_bodies((A; B), (C; D), (A; B; C; D)) :- !. % Combine disjunctions. +combine_two_bodies(A, B, (A, B)). % Combine simple terms using conjunction. +*/ + +% if there are no more bodies, the accumulated Combined is the final CombinedBodies. +combine_bodies([], _, Combined, Combined). +% combine the transformed body with the accumulated bodies. +combine_bodies([(Head:-Body)|T], NewHead, Acc, CombinedBodies) :- + transform(Head, NewHead, Body, TransformedBody), + % Create a disjunction between the accumulated bodies and the transformed body. + NewAcc = (Acc;TransformedBody), + combine_bodies(T, NewHead, NewAcc, CombinedBodies). + +% combine_code/3 combines Guard and Body to produce either Guard, Body, or a conjunction of both, depending on the values of Guard and Body. +combine_code(Guard, Body, Guard) :- Body==true, !. +combine_code(Guard, Body, Body) :- Guard==true, !. +combine_code(Guard, Body, (Guard, Body)). + +% create_unifier/3 creates a unification code that unifies OneHead with NewHead. +% If OneHead and NewHead are structurally equal, then they are unified and the unification Guard is 'true'. +% Otherwise, the unification code is 'metta_unify(OneHead,NewHead)'. + +create_unifier(OneHead,NewHead,Guard):- OneHead=@=NewHead,OneHead=NewHead,!,Guard=true. +create_unifier(OneHead,NewHead,Guard):- compound(OneHead), + compound_name_list(OneHead,_,Args1), + compound_name_list(NewHead,_,Args2), + create_unifier_goals(Args1,Args2,Guard),!. +create_unifier(OneHead,NewHead,u(OneHead,NewHead)). + +create_unifier_goals([V1],[V2],u(V1,V2)):-!. +create_unifier_goals([V1|Args1],[V2|Args2],RightGuard):-!, + create_unifier_goals(Args1,Args2,Guard), + combine_code(u(V1,V2),Guard,RightGuard). +create_unifier_goals([],[],true). + + +% transform/4 combines unification code with Body to produce NewBody according to the transformations required by NewHead. +% It uses create_unifier/3 to generate the unification code between OneHead and NewHead. +transform(OneHead, NewHead, Body, NewBody):- create_unifier(OneHead,NewHead,Guard), + combine_code(Guard,Body,NewBody). + + + + +% =============================== +% Compile in memory buffer +% =============================== + +add_assertion(NewAssertion) :- + expand_to_hb(NewAssertion,H,_), + functor(H,F,A), functor(HH,F,A), + assert(NewAssertion), + % Get the current clauses of my_predicate/1 + findall(HH:-B,clause(HH,B),Prev), + % Create a temporary file and add the new assertion along with existing clauses + abolish(F/A), + create_and_consult_temp_file(F/A, Prev). + +% Predicate to create a temporary file and write the tabled predicate +create_and_consult_temp_file(PredName/Arity, PredClauses) :- + % Generate a unique temporary memory buffer + tmp_file_stream(text, TempFileName, TempFileStream), + % Write the tabled predicate to the temporary file + format(TempFileStream, ':- multifile((~q)/~w).~n', [PredName, Arity]), + format(TempFileStream, ':- dynamic((~q)/~w).~n', [PredName, Arity]), + %if_t( \+ option_value('tabling',false), + if_t(option_value('tabling',true),format(TempFileStream,':- ~q.~n',[table(PredName/Arity)])), + maplist(write_clause(TempFileStream), PredClauses), + % Close the temporary file + close(TempFileStream), + % Consult the temporary file + consult(TempFileName), + % Delete the temporary file after consulting + delete_file(TempFileName), + assert(metta_compiled_predicate(PredName,Arity)). + +% Helper predicate to write a clause to the file +write_clause(Stream, Clause) :- + subst_vars(Clause,Can), + write_canonical(Stream, Can), + write(Stream, '.'), + nl(Stream). + + +% =============================== +% TESTING +% =============================== +% Define 'fb', a rule that calls 'make' and writes information for each clause of 'fb0'. +% 'make' compiles the program. +% The 'forall' loop will write and call all goals of the 'fb0' clauses. + + +fb:- make, + writeln(';; ==========================================='), + forall((clause(fb0,Goal),write(';; '),writeq(?- Goal),nl,call(Goal)), + writeln(';; ===========================================')). + +% The 'fb0' rule showing mettalog sources with specific definitions. +fb0:- show_mettalog_src((two_pi(R):-(pi(A), +(A, A, B), R is B))). +fb0:- show_mettalog_src(factorial_tail_basic). +fb0:- show_mettalog_src(funct). + +print_metta_src :- show_mettalog_src. +% 'show_mettalog_src' rule compiles the program and shows mettalog sources for each source file containing 'metta'. +show_mettalog_src:- make, + forall((source_file(AsPred,File), + symbol_contains(File,metta)), + show_mettalog_src(AsPred)). + + +% Handling different cases for 'show_mettalog_src' with different input parameters. +% These rules use nonvar, current_predicate, and other built-ins to perform various checks and actions +% based on the type and value of the input to 'show_mettalog_src'. +show_mettalog_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_mettalog_src(F,A)). +show_mettalog_src(C):- show_cvts(C),!. + +% The 'show_space_src' rules compile the program and show space sources for each space predicate. +show_space_src:- make, + forall(space_preds(AsPred),show_space_src(AsPred)). + + +% Similar to the 'show_mettalog_src' rules, these rules handle different cases for 'show_space_src' +% with different input parameters and perform various checks and actions based on the type and value of the input. +show_space_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_space_src(F,A)). +show_space_src(C):- show_cvts(C),!. + +% 'show_cvts' rule processes a term, performing different actions based on the structure of the term. +show_cvts(Term):- + once((is_list(Term), sexpr_s2p(Term,PF))), \+ is_list(PF),!,show_cvts(PF). + +% 'show_cvts' continues processing, performing conversions between predicates and functions, +% and pretty-printing original terms, function forms, and Prolog forms. +show_cvts(Term):- iz_conz(Term),!, ppc(orig,Term),Term = FunctForm, + functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog), + preds_to_functs(Prolog,NFunctForm), ppc(functs,NFunctForm). +show_cvts(Term):- ppc(orig,Term), + preds_to_functs(Term,FunctForm), ppc(functs,FunctForm), + functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog). + +% 'show_mettalog_src' for specific predicate, prints metta clauses if they exist in the source file containing 'metta'. +show_mettalog_src(F,A):- functor(Head,F,A), + ignore((predicate_property(Head,number_of_clauses(_)), + source_file(Head,File),atom_contains(File,metta),!, + nl,findall((Head:-Body), + clause(Head,Body), Clauses), + print_metta_clauses(Clauses))),nl. + +% 'print_metta_clauses' rule is handling the printing of metta clauses. +% It checks the form of the input clauses and calls 'print_metta_clause' accordingly. +print_metta_clauses([]):- !. +print_metta_clauses([Head:-Body]):- !, print_metta_clause(Head,Body). +print_metta_clauses(Clauses):- combine_clauses(Clauses,Head,Body),!,print_metta_clause(Head,Body). +print_metta_clause(Head,Body):- + print_metta_clause0(Head,Body), + show_cvts(Head:-Body). + +% 'print_metta_clause0' rule prints metta clauses based on the body. +% It transforms the body to a list, if needed, and prints it in a sequential form. +print_metta_clause0(Head,Body):- Body == true,!, pp_metta([=,Head,'True']). +print_metta_clause0(Head,Body):- Body == false,!, pp_metta([=,Head,'False']). +print_metta_clause0(Head,Body):- conjuncts_to_list(Body,List), into_sequential(List,SP), pp_metta([=,Head,SP]). + + +% =============================== +% PRINTERS +% =============================== +% 'ppc' and 'ppc1' rules pretty-print original terms and convert them to metta if different, +% printing the converted forms as well. +ppc(Msg,Term):- ppc1(Msg,Term), p2m(Term,MeTTa),!, (MeTTa\==Term -> ppc1(p2m(Msg),MeTTa) ; true). + +ppc1(Msg,Term):- \+ \+ ( ppct(Msg,Term) ),!. + +ppc1(Msg,Term):- \+ \+ ( ignore(guess_pretty(Term)), + writeln('---------------------'), + write(p(Msg)),write(':'),nl, + portray_clause(Term), + writeln('---------------------'), + \+ \+ (print_tree(?-show_cvts(Term))),nl, + writeln('---------------------'), + write(s(Msg)),write(':'),nl, + write_src(Term),nl). + +ppct(Msg,Term):- is_list(Term),!, + writeln('---------------------'), + numbervars(Term,666,_,[attvar(bind)]), + write((Msg)),write(':'),nl, + write_src(Term),nl. +ppct(Msg,Term):- Term=(_ :- _),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + portray_clause(Term),nl. +ppct(Msg,Term):- Term=(_=_),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + numbervars(Term,444,_,[attvar(bind)]), + write_src(Term),nl. +ppct(Msg,Term):- Term=(_ :- _),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + numbervars(Term,222,_,[attvar(bind)]), + print_tree(Term),nl. + +% 'pp_metta' rule is responsible for pretty-printing metta terms. +pp_metta(P):- pretty_numbervars(P,PP),with_option(concepts=false,pp_fb(PP)). + +% The predicate with_indents/2 modifies the src_indents option value during the execution of a goal. +% The first argument is the desired value for src_indents, +% and the second argument is the Goal to be executed with the given src_indents setting. +with_indents(TF, Goal) :- + % Set the value of the `src_indents` option to TF and then execute the Goal + with_option(src_indents, TF, Goal). + +% The predicate allow_concepts/0 checks whether the use of concepts is allowed. +% It does this by checking the value of the concepts option and ensuring it is not false. +allow_concepts :- + % Check if the option `concepts` is not set to false + option_else(concepts, TF, 'False'), + \+ TF == 'False'. + +% The predicate with_concepts/2 enables or disables the use of concepts during the execution of a given goal. +% The first argument is a Boolean indicating whether to enable (true) or disable (false) concepts. +% The second argument is the Goal to be executed with the given concepts setting. +with_concepts(TF, Goal) :- + % Set the value of the `concepts` option to TF and then execute the Goal + with_option(concepts, TF, Goal). + + +% Various 'write_src' and 'write_src0' rules are handling the writing of the source, +% dealing with different types of values, whether they are lists, atoms, numbers, strings, compounds, or symbols. +write_src(V):- notrace(write_src0(V)). +write_src0(V):- V ==[],!,write('()'). +write_src0(V):- allow_concepts,!,with_concepts('False',write_src1(V)),flush_output. +write_src0(V):- is_list(V),!,pp_sexi(V). +write_src0(V):- write_src1(V),!. + +% Handling the final write when the value is a variable or a '$VAR' structure. +is_final_write(V):- var(V), !, format('$~p',[V]). +is_final_write('$VAR'(S)):- !, write('$'),write(S). + +% Handling more cases for 'write_src1', when the value is a number, a string, a symbol, or a compound. +write_src1(V) :- is_final_write(V),!. +write_src1((Head:-Body)) :- !, print_metta_clause0(Head,Body). +write_src1(''):- !, writeq(''). +write_src1(V):- number(V),!, writeq(V). +write_src1(V):- string(V),!, writeq(V). + +% Continuing with 'write_src1', 'write_mobj', and related rules, +% handling different cases based on the value’s type and structure, and performing the appropriate writing action. +write_src1(V):- symbol(V), should_quote(V),!, + symbol_string(V,S),writeq(S). +write_src1(V):- symbol(V),!,write(V). +write_src1(V):- compound(V), \+ is_list(V),!,write_mobj(V). +write_src1(V):- pp_sex(V),!. + +write_mobj(V) :- is_final_write(V),!. +write_mobj(V):- ( \+ compound(V) ; is_list(V)),!, write_src0(V). + +write_mobj(V):- compound_name_list(V,F,Args),write_mobj(F,Args),!. +write_mobj(V):- writeq(V). +write_mobj(exec,[V]):- !, write('!'),write_src(V). +write_mobj('$OBJ',[_,S]):- write('['),write_src(S),write(' ]'). +write_mobj('{...}',[S]):- write('{'),write_src(S),write(' }'). +write_mobj('[...]',[S]):- write('['),write_src(S),write(' ]'). +write_mobj('$STRING',[S]):- !, writeq(S). +write_mobj(F,Args):- fail, mlog_sym(K),!,pp_sexi([K,F|Args]). +write_mobj(F,Args):- pp_sexi([F|Args]). + +% Rules for determining when a symbol needs to be quoted in metta. + +dont_quote(Atom):- atom(Atom),upcase_atom(Atom,Atom),downcase_atom(Atom,Atom). + +should_quote(Atom) :- \+ atom(Atom), \+ string(Atom),!,fail. +should_quote(Atom) :- + \+ dont_quote(Atom), + % atom(Atom), % Ensure that the input is an atom + atom_chars(Atom, Chars), + once(should_quote_chars(Chars);should_quote_atom_chars(Atom,Chars)). + +contains_unescaped_quote(['"']):- !, fail. % End with a quote +contains_unescaped_quote(['"'|_]) :- !. +contains_unescaped_quote(['\\', '"'|T]) :- !, contains_unescaped_quote(T). +contains_unescaped_quote([_|T]) :- contains_unescaped_quote(T). + +% Check if the list of characters should be quoted based on various conditions +should_quote_chars([]). +should_quote_chars(['"'|Chars]):- !, contains_unescaped_quote(Chars). +should_quote_chars(Chars) :- + member('"', Chars); % Contains quote not captured with above clause + member(' ', Chars); % Contains space + member('''', Chars); % Contains single quote + member('/', Chars); % Contains slash + member(',', Chars); % Contains comma + member('|', Chars). % Contains pipe +should_quote_atom_chars(Atom,_) :- atom_number(Atom,_),!. +should_quote_atom_chars(Atom,[Digit|_]) :- char_type(Digit, digit), \+ atom_number(Atom,_). + +% Example usage: +% ?- should_quote('123abc'). +% true. +% ?- should_quote('123.456'). +% false. + + +% ========================================= +% STERM -> PTERM +% ========================================= + +iz_exact_symbol(N,_):- \+ atom(N),!,fail. +iz_exact_symbol(N,P):- nonvar(P),!,iz_exact_symbol(N,PP),zalwayz(P=PP). +iz_exact_symbol(':-',':-'). +iz_exact_symbol('?-','?-'). +iz_exact_symbol('??',_). + +%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). + +maybe_varz(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. + +%% sexpr_s2p(Fn,?VAR, ?V) is det. +% +% S-expression Sterm Converted To Pterm. +% +sexpr_s2p(HB,P):- fail, compound(HB), HB=~ (H=B), compile_for_assert(H,B,Cl), + clause_to_code(Cl,P),!. +sexpr_s2p(S,P):- sexpr_s2p(progn,1,S,P). + + +clause_to_code(P,P):- is_ftVar(P),!. +%clause_to_code(P:-True,P):- True == true,!. +clause_to_code((H:-B),P):- B==true, !, combine_code(B,H,P). +clause_to_code(P,P). + +sexpr_s2p(_Fn,_Nth,VAR,VAR):-is_ftVar(VAR),!. +sexpr_s2p(_Fn,_Nth,S,P):- iz_exact_symbol(S,P),!. +sexpr_s2p(_Fn,_Nth,'#'(S),P):- iz_exact_symbol(S,P),!. +sexpr_s2p(_Fn,_Nth,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. +sexpr_s2p(Fn,Nth,S,P):- S==[], iz_fun_argz(Fn,Nth),!,P=S. + +sexpr_s2p(Fn,Nth,S,P):- expects_type(Fn,Nth,Type),will_become_type(Type,S,P),!. + +sexpr_s2p(_Fn,_Nth,[F|SList],P):- is_list(SList), length(SList,Len),is_syspred(F,Len,Pred), sexpr_s2p_arglist(F,1,SList,PList), !, P=..[Pred|PList]. +:- style_check(-singleton). + +sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- iz_fun_argz(Fn,Nth),!,sexpr_s2p(S,P), sexpr_s2p(Fn,Nth,SList,PList). +sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- ( \+ atom(S) ; \+ is_list(SList)), !,sexpr_s2p(list(Fn),Nth,S,P), sexpr_s2p(list(Fn),Nth,SList,PList). +sexpr_s2p(_Fn,_Nth,[S,STERM0],PTERM):- iz_quoter(S),sexpr_s2p_pre_list(S,0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_s2p(_Fn,_Nth,[S|SList],P):- atom(S), SList == [], compound_name_arity(P,S,0). +% sexpr_s2p(Fn,Nth,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_varz(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_s2p(Fn,Nth,NewList,PTERM). +% sexpr_s2p(Fn,Nth,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- \+ atom(S),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +/* +sexpr_s2p(Fn,Nth,[S,Vars|TERM],PTERM):- nonvar(S), + call_if_defined(common_logic_snark:iz_quantifier(S)), + zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST), + PTERM =~ [S,Vars|PLIST])),!. +*/ +% sexpr_s2p(progn,_,[S|TERM],PTERM):- S==AND,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +%sexpr_s2p(Fn,Nth,[S],O):- is_ftVar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. +%sexpr_s2p(Fn,Nth,[S],O):- nonvar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- S==and,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +% sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_va_relation(S),!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_relation_sexpr(S),zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),PTERM =~ [S|PLIST])),!. +%sexpr_s2p(Fn,Nth,STERM,PTERM):- STERM =~ [S|TERM],sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),z_univ(Fn,Nth,PTERM,[S|PLIST]),!. +sexpr_s2p(Fn,Nth,[S|STERM0],PTERM):- + sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM), + sexpr_s2p_arglist(S,1,STERM,PLIST), z_univ(Fn,Nth,PTERM,[S|PLIST]),!. +sexpr_s2p(_Fn,_Nth,VAR,VAR). + + +expects_type(Fn,Nth,Type):- + get_operator_typedef(Self,Fn,Params,RetType), + nth0(Nth,[RetType|Params],Type),nonvar(Type). + +will_become_type(Type,S,P):- try_adjust_arg_types(=,_RetType,88,_Self,[Type],[S],[PS]),PS=P,!. +will_become_type(Type,S,P):- is_ftVar(S),!,P=S. +will_become_type(Type,S,P):- + get_type(S,T),!, + (is_subtype(T,Type)->S=P; P=coerce(Type,S)). +will_become_type(_Type,S,P):-!,S=P. + +is_subtype(T,TT):- T=@=TT,!,T=TT. +is_subtype(T,TT):- T=TT,!. + +iz_quoter('#BQ'):- iz_common_lisp. +iz_quoter('#COMMA'):- iz_common_lisp. +iz_quoter('quote'). +iz_quoter(superpose). + +iz_fun_argz(list(_),_). +iz_fun_argz(defmacro,2). +iz_fun_argz(defun,2). +iz_fun_argz(let,1). +iz_fun_argz('let*',1). +iz_fun_argz('member',2). +%iz_fun_argz('let*',2). +iz_fun_argz(F,1):- iz_quoter(F). + +z_functor(F):- \+ atom(F), !,fail. +z_functor(F):- \+ atom_concat('?',_,F). +z_functor(F):- \+ atom_concat('$',_,F). + +%z_univ(_Fn,1,S,S):-!. +z_univ(_Fn,_,P,[F|ARGS]):- z_functor(F),is_list(ARGS),length(ARGS,A),l_arity_l(F,A),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,0,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,_Nth,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,_Nth,P,S):-P=S. + +l_arity_l(F,A):- clause_b(arity(F,A)). +l_arity_l(function,1). +l_arity_l(quote,1). +l_arity_l('#BQ',1):- iz_common_lisp. +l_arity_l(F,A):-current_predicate(F/A). +l_arity_l(_,1). + +sexpr_s2p_arglist(_Fn,_,VAR,VAR):-is_ftVar(VAR),!. +sexpr_s2p_arglist(Fn,Nth,[S|SList],[P|PList]):-sexpr_s2p(Fn,Nth,S,P), + (Nth>0->Nth2 is Nth+1;Nth2=0),sexpr_s2p_arglist(Fn,Nth2,SList,PList),!. +sexpr_s2p_arglist(Fn,Nth,S,P):-sexpr_s2p(Fn,Nth,S,P),!. +sexpr_s2p_arglist(_Fn,_Nth,VAR,VAR). + +sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ compound(STERM), !. +sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ is_list(STERM), !. +% sexpr_s2p_pre_list(Fn,_,[S|STERM],[S|STERM]):- STERM == [], !. +sexpr_s2p_pre_list(Fn,Nth,[S0|STERM0],[S|STERM]):- + (is_list(S0)->sexpr_s2p(Fn,Nth,S0,S);sexpr_s2p_pre_list(Fn,Nth,S0,S)), + sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM),!. +sexpr_s2p_pre_list(_Fn,_,STERM,STERM). + + + + diff --git a/metta_vspace/pyswip-12-15/metta_data.pl b/metta_vspace/pyswip-12-15/metta_data.pl new file mode 100755 index 00000000..93eff6b2 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_data.pl @@ -0,0 +1,1154 @@ +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. +%is_function(F):- atom(F). +is_metta_data_functor(_Eq,_Othr,H):- clause(is_data_functor(H),_). +is_metta_data_functor(Eq,Other,H):- H\=='Right', H\=='Something', + % metta_type(Other,H,_), % fail, + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_), + \+ is_metta_builtin(H), + \+ is_comp_op(H,_), + \+ is_math_op(H,_,_). + + +:- if( \+ current_predicate(mnotrace/1) ). + mnotrace(G):- once(G). +:- endif. + + +is_decl_type(ST):- metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). +is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). +is_decl_type(ST):- \+ atom(ST),!,fail. +is_decl_type('%Undefined%'). is_decl_type('Number'). +is_decl_type('String'). is_decl_type('Bool'). +is_decl_type('Type'). is_decl_type('Symbol'). +is_decl_type('Expression'). +is_decl_type('Any'). is_decl_type('Atom'). +is_decl_type(Type):- is_decl_type_l(Type). +is_decl_type_l('StateMonad'). is_decl_type_l('List'). + + +last_type(List,Type):- is_list(List),last(List,Type),is_type(Type). +last_type(Type,Type):- is_type(Type),!. + +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval(EvalMe):- is_list(EvalMe),!. + + +args_violation(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !, fail. +args_violation(Depth,Self,[A|Args],[L|List]):- once(arg_violation(Depth,Self,A,L) ; args_violation(Depth,Self,Args,List)). +arg_violation(Depth,Self,A,L):- \+ (get_type0(Depth,Self,A,T), \+ type_violation(T,L)). +%arg_violation(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_violation(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!,fail. +type_violation(T,L):- T\=L. + + +not_arg_violation(Depth,Self,Arg,Type):- + \+ arg_violation(Depth,Self,Arg,Type), + arg_conform(Depth,Self,Arg,Type). + + +args_conform(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !. +args_conform(Depth,Self,[A|Args],[L|List]):- arg_conform(Depth,Self,A,L) , args_conform(Depth,Self,Args,List). +arg_conform(Depth,Self,A,L):- get_type(Depth,Self,A,T), type_conform(T,L),!. +arg_conform(_Dpth,_Slf,_,_). +%arg_conform(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_conform(T,L):- T=L,!. +type_conform(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!. + +is_nonspecific_type(Var):- var(Var),!. +is_nonspecific_type('%Undefined%'). +is_nonspecific_type([]). +is_nonspecific_type('Atom'). +is_nonspecific_type('Any'). + +%get_type(Depth,Self,Val,Type):- get_type01(Depth,Self,Val,Type). +get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. + +get_type9(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type9(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type9(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. +get_type9(Depth,Self,Val,Type):- get_type2(Depth,Self,Val,Type), ( is_list(Type)->! ; true). +get_type9(_Dpth,_Slf,_Vl,[]). + +get_type2(Depth,_Slf,Type,Type):- Depth<1,!. +%get_type(Depth,Self,Val,Type):- is_debugging(eval), !, +% ftrace(get_type0(Depth,Self,Val,Type)). +get_type2(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type2(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type). + + +is_space_type(Space,is_asserted_space):- was_asserted_space(Space),!. +is_space_type(Space,Test):- no_repeats(Test,space_type_method(Test,_,_)),call(Test,Space),!. + +is_state_type(State,Test):- no_repeats(Test,state_type_method(Test,_,_)),call(Test,State),!. + +%is_dynaspace(Expr):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +is_dynaspace(S):- var(S),!,fail. +is_dynaspace(S):- was_asserted_space(S). +is_dynaspace(S):- py_named_space(S). +is_dynaspace(S):- typed_list(S,'hyperon::space::DynSpace',_). +% notrace( is_space_type(Expr,_)),!. +get_type0(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type0(Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, + ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(Depth2,Self,Val,Type))). +get_type0(Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(Depth,Self,Val,Type),!. +get_type0(Depth,Self,Val,Type):- get_type03(Depth,Self,Val,Type),!. + +get_type01(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type01(_Dpth,_Slf, [],'%Undefined%'):- !. +get_type01(_Dpth,_Slf,Val,'Number'):- number(Val). +get_type01(_Dpth,_Slf,Val,'Integer'):- integer(Val). +get_type01(_Dpth,_Slf,Val,'Decimal'):- float(Val). +get_type01(_Dpth,_Slf,Val,'Rational'):- rational(Val). +get_type01(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type01(_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). +get_type01(_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. +get_type01(_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). +get_type01(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). +get_type01(Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(Depth2,Self,Val,Type). +%get_type01(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +get_type01(_Dpth,_Slf,_Val,'String'). +get_type01(_Dpth,_Slf,_Val,'Symbol'). + + + +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. +get_type02(Depth,Self,[Op|Expr],Type):- maplist(get_type(Depth,Self),Expr,Types), + metta_type(Self,[Op|Types],Type). + + +get_type03(Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), + get_type03(Depth,Self,[Op|Args],Type1), + get_type(Depth,Self,Arg,ArgType), + ignore(sub_var(ArgType,Type1)->true;(sub_term(ST,Type1),var(ST),ST=ArgType)), + last(Type1,Type). + +get_type03(_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). +get_type03(Depth,Self,[Op|Args],Type):- symbol(Op), + get_operator_typedef(Self,Op,Params,RetType), + % Fills in type variables when possible + ignore(args_conform(Depth,Self,Args,Params)), + % unitests: arg violations should return () + (\+ args_violation(Depth,Self,Args,Params) -> Type=RetType ; (Type=[],!)). + + +get_type03(Depth,Self,Expr,Type):- get_type02(Depth,Self,Expr,Type). + +get_type03(Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, + eval_args(Depth2,Self,EvalMe,Val), + \+ needs_eval(Val),!, + get_type(Depth2,Self,Val,Type). + +get_type03(Depth,Self,Expr,Type):- Depth2 is Depth-1, + eval_args(Depth2, Self,Expr,Val), Expr\=@=Val,!, + get_type(Depth2,Self,Val,Type). + +get_type03(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). + +get_type03(_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. + +get_type03(Depth,Self,List,Types):- List\==[], is_list(List), + Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). + + +get_type03(_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. + +%get_type0(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +%get_type(Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +%get_type0(_Dpth,_Slf,_,'%Undefined%'):- fail. + +state_decltype(Expr,Type):- functor(Expr,_,A),arg(A,Expr,Type),once(var(Type);is_decl_type(Type)). + + +get_type1(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type1(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type1(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type1(Depth,Self,Val,Type). + + +get_type1(Depth,Self,EvalMe,Type):- needs_eval(EvalMe), + eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, + get_type1(Depth,Self,Val,Type). + +get_type1(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type1(Depth,_Slf,Type,Type):- Depth<1,!. +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type1(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(Depth2,Self),List,Types). +get_type1(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type1(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(Depth2,Self,Type2,Type). +%get_type1(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type1(Depth,Self,Expr,Type):-Depth2 is Depth-1, + eval_args(Depth2,Self,Expr,Val), + Expr\=@=Val,get_type1(Depth2,Self,Val,Type). + + +get_type1(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type1(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type1(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type1(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type1(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type1(Depth2,Self,Ele,Type)),!. +%get_type1(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type1(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type1(_Dpth,_Slf,_,'%Undefined%'):- fail. +%get_type1(Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(Depth2,Self,Val,Type). + + + +as_prolog(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). + + + +try_adjust_arg_types(_Eq,RetType,Depth,Self,Params,X,Y):- + as_prolog(Depth,Self,X,M), + args_conform(Depth,Self,M,Params),!, + set_type(Depth,Self,Y,RetType), + into_typed_args(Depth,Self,Params,M,Y). +%adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(eval_args(Depth,Self),X,Y). +%adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(as_prolog(Depth,Self),X,Y),!. + +adjust_args(_Eq,_RetType,_Depth,_Self,_Op,X,Y):- X==[],!,Y=[]. +adjust_args(_Eq,_RetType,_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. +adjust_args(Eq,RetType,Depth,Self,Op,X,Y):- + %trace, + get_operator_typedef(Self,Op,Params,RetType), + try_adjust_arg_types(Eq,RetType,Depth,Self,Params,X,Y). +adjust_args(_Eq,_RetType,Depth,Self,_,X,Y):- as_prolog(Depth,Self,X,Y). + +into_typed_args(_Dpth,_Slf,T,M,Y):- (\+ iz_conz(T); \+ iz_conz(M)),!, M=Y. +into_typed_args(Depth,Self,[T|TT],[M|MM],[Y|YY]):- + into_typed_arg(Depth,Self,T,M,Y), + into_typed_args(Depth,Self,TT,MM,YY). + +into_typed_arg(_Dpth,Self,T,M,Y):- var(M),!,put_attr(M,metta_type,Self=T),put_attr(Y,metta_type,Self=T),Y=M. +into_typed_arg(Depth,Self,T,M,Y):- into_typed_arg0(Depth,Self,T,M,Y)*->true;M=Y. + +into_typed_arg0(Depth,Self,T,M,Y):- var(T), !, get_type(Depth,Self,M,T), + (wants_eval_kind(T)->eval_args(Depth,Self,M,Y);Y=M). + +into_typed_arg0(Depth,Self,T,M,Y):- is_pro_eval_kind(T),!,eval_args(Depth,Self,M,Y). +into_typed_arg0(Depth,Self,T,M,Y):- ground(M),!, \+ arg_violation(Depth,Self,M,T),Y=M. +into_typed_arg0(_Dpth,_Slf,T,M,Y):- is_non_eval_kind(T),!,M=Y. +into_typed_arg0(Depth,Self,_,M,Y):- eval_args(Depth,Self,M,Y). + +set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. +set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) + *->Was=Type + ; if_t(var(Var),put_attr(Var,metta_type,Self=Type)). + +metta_type:attr_unify_hook(Self=Type,NewValue):- + get_type(20,Self,NewValue,Was), + can_assign(Was,Type). + +can_assign(Was,Type):- Was=Type,!. +can_assign(Was,Type):- (is_nonspecific_type(Was);is_nonspecific_type(Type)),!. +can_assign(_Ws,_Typ). + +is_non_eval_kind(Type):- is_nonspecific_type(Type),!. +is_non_eval_kind('Atom'). + +is_pro_eval_kind('Number'). +is_pro_eval_kind('Symbol'). +is_pro_eval_kind('Bool'). + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +%is_user_defined_goal(Self,[H|_]):- is_user_defined_head(Eq,Self,H). + +is_user_defined_head(Other,H):- is_user_defined_head(=,Other,H). +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f(=,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +%s_user_defined_head_f1(Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Other,H):- is_user_defined_head_f1(=,Other,H). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + + + +is_special_op(Op):- current_self(Self),is_special_op(Self,Op). + +is_special_op(_Slf,F):- \+ atom(F), \+ var(F), !, fail. +is_special_op(Self,Op):- get_operator_typedef(Self,Op,Params,_RetType), + maplist(is_non_eval_kind,Params). +is_special_op(_Slf,Op):- is_special_builtin(Op). + + + +get_operator_typedef(Self,Op,Params,RetType):- + get_operator_typedef1(Self,Op,Params,RetType)*->true; + get_operator_typedef2(Self,Op,Params,RetType). +get_operator_typedef1(Self,Op,Params,RetType):- + metta_type(Self,Op,['->'|List]), + append(Params,[RetType],List). +get_operator_typedef2(Self,Op,Params,RetType):- + nop(wdmsg(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + + +is_special_builtin('case'). +is_special_builtin(':'). + +%is_special_builtin('='). +is_special_builtin('->'). +is_special_builtin('bind!'). +%is_special_builtin('new-space'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('if'). +is_special_builtin('rtrace'). +is_special_builtin('or'). +is_special_builtin('and'). +is_special_builtin('not'). +is_special_builtin('match'). +is_special_builtin('call'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('nop'). +is_special_builtin('assertEqual'). +is_special_builtin('assertEqualToResult'). +is_special_builtin('collapse'). +is_special_builtin('superpose'). +%is_special_builtin('=='). + +is_metta_builtin(Special):- is_special_builtin(Special). + +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('compile!'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + +% Comparison Operators in Prolog +% is_comp_op('=', 2). % Unification +is_comp_op('\\=', 2). % Not unifiable +is_comp_op('==', 2). % Strict equality +is_comp_op('\\==', 2). % Strict inequality +is_comp_op('@<', 2). % Term is before +is_comp_op('@=<', 2). % Term is before or equal +is_comp_op('@>', 2). % Term is after +is_comp_op('@>=', 2). % Term is after or equal +is_comp_op('=<', 2). % Less than or equal +is_comp_op('<', 2). % Less than +is_comp_op('>=', 2). % Greater than or equal +is_comp_op('>', 2). % Greater than +is_comp_op('is', 2). % Arithmetic equality +is_comp_op('=:=', 2). % Arithmetic exact equality +is_comp_op('=\\=', 2). % Arithmetic inequality + +% Arithmetic Operations +is_math_op('*', 2, exists). % Multiplication +is_math_op('**', 2, exists). % Exponentiation +is_math_op('+', 1, exists). % Unary Plus +is_math_op('+', 2, exists). % Addition +is_math_op('-', 1, exists). % Unary Minus +is_math_op('-', 2, exists). % Subtraction +is_math_op('.', 2, exists). % Array Indexing or Member Access (Depends on Context) +is_math_op('/', 2, exists). % Division +is_math_op('//', 2, exists). % Floor Division +is_math_op('///', 2, exists). % Alternative Division Operator (Language Specific) +is_math_op('/\\', 2, exists). % Bitwise AND +is_math_op('<<', 2, exists). % Bitwise Left Shift +is_math_op('>>', 2, exists). % Bitwise Right Shift +is_math_op('\\', 1, exists). % Bitwise NOT +is_math_op('\\/', 2, exists). % Bitwise OR +is_math_op('^', 2, exists). % Bitwise XOR +is_math_op('abs', 1, exists). % Absolute Value +is_math_op('acos', 1, exists). % Arc Cosine +is_math_op('acosh', 1, exists). % Hyperbolic Arc Cosine +is_math_op('asin', 1, exists). % Arc Sine +is_math_op('asinh', 1, exists). % Hyperbolic Arc Sine +is_math_op('atan', 1, exists). % Arc Tangent +is_math_op('atan2', 2, exists). % Two-Argument Arc Tangent +is_math_op('atanh', 1, exists). % Hyperbolic Arc Tangent +is_math_op('cbrt', 1, exists). % Cube Root +is_math_op('ceil', 1, exists). % Ceiling Function +is_math_op('ceiling', 1, exists). % Ceiling Value +is_math_op('cmpr', 2, exists). % Compare Two Values (Language Specific) +is_math_op('copysign', 2, exists). % Copy the Sign of a Number +is_math_op('cos', 1, exists). % Cosine Function +is_math_op('cosh', 1, exists). % Hyperbolic Cosine +is_math_op('cputime', 0, exists). % CPU Time +is_math_op('degrees', 1, exists). % Convert Radians to Degrees +is_math_op('denominator', 1, exists). % Get Denominator of Rational Number +is_math_op('div', 2, exists). % Integer Division +is_math_op('e', 0, exists). % Euler's Number +is_math_op('epsilon', 0, exists). % Machine Epsilon +is_math_op('erf', 1, exists). % Error Function +is_math_op('erfc', 1, exists). % Complementary Error Function +is_math_op('eval', 1, exists). % Evaluate Expression +is_math_op('exp', 1, exists). % Exponential Function +is_math_op('expm1', 1, exists). % exp(x) - 1 +is_math_op('fabs', 1, exists). % Absolute Value (Floating-Point) +is_math_op('float', 1, exists). % Convert Rational to Float +is_math_op('float_fractional_part', 1, exists). % Fractional Part of Float +is_math_op('float_integer_part', 1, exists). % Integer Part of Float +is_math_op('floor', 1, exists). % Floor Value +is_math_op('fmod', 2, exists). % Floating-Point Modulo Operation +is_math_op('frexp', 2, exists). % Get Mantissa and Exponent +is_math_op('fsum', 1, exists). % Accurate Floating Point Sum +is_math_op('gamma', 1, exists). % Gamma Function +is_math_op('gcd', 2, exists). % Greatest Common Divisor +is_math_op('getbit', 2, exists). % Get Bit at Position +is_math_op('hypot', 2, exists). % Euclidean Norm, Square Root of Sum of Squares +is_math_op('inf', 0, exists). % Positive Infinity +is_math_op('integer', 1, exists). % Convert Float to Integer +is_math_op('isinf', 1, exists). % Check for Infinity +is_math_op('isnan', 1, exists). % Check for Not a Number +is_math_op('lcm', 2, exists). % Least Common Multiple +is_math_op('ldexp', 2, exists). % Load Exponent of a Floating Point Number +is_math_op('lgamma', 1, exists). % Log Gamma +is_math_op('log', 1, exists). % Logarithm Base e +is_math_op('log10', 1, exists). % Base 10 Logarithm +is_math_op('log1p', 1, exists). % log(1 + x) +is_math_op('log2', 1, exists). % Base 2 Logarithm +is_math_op('lsb', 1, exists). % Least Significant Bit +is_math_op('max', 2, exists). % Maximum of Two Values +is_math_op('maxr', 2, exists). % Maximum Rational Number (Language Specific) +is_math_op('min', 2, exists). % Minimum of Two Values +is_math_op('minr', 2, exists). % Minimum Rational Number (Language Specific) +is_math_op('mod', 2, exists). % Modulo Operation +is_math_op('modf', 2, exists). % Return Fractional and Integer Parts +is_math_op('msb', 1, exists). % Most Significant Bit +is_math_op('nan', 0, exists). % Not a Number +is_math_op('nexttoward', 2, exists). % Next Representable Floating-Point Value +is_math_op('numerator', 1, exists). % Get Numerator of Rational Number +is_math_op('pi', 0, exists). % Pi +is_math_op('popcount', 1, exists). % Count of Set Bits +is_math_op('pow', 2, exists). % Exponentiation +is_math_op('powm', 3, exists). % Modulo Exponentiation +is_math_op('radians', 1, exists). % Convert Degrees to Radians +is_math_op('remainder', 2, exists). % Floating-Point Remainder +is_math_op('remquo', 3, exists). % Remainder and Part of Quotient +is_math_op('round', 1, exists). % Round to Nearest Integer +is_math_op('roundeven', 1, exists). % Round to Nearest Even Integer +is_math_op('setbit', 2, exists). % Set Bit at Position +is_math_op('signbit', 1, exists). % Sign Bit of Number +is_math_op('sin', 1, exists). % Sine Function +is_math_op('sinh', 1, exists). % Hyperbolic Sine +is_math_op('sqrt', 1, exists). % Square Root +is_math_op('tan', 1, exists). % Tangent Function +is_math_op('tanh', 1, exists). % Hyperbolic Tangent +is_math_op('testbit', 2, exists). % Test Bit at Position +is_math_op('trunc', 1, exists). % Truncate Decimal to Integer +is_math_op('ulogb', 1, exists). % Unbiased Exponent of a Floating-Point Value +is_math_op('xor', 2, exists). % Exclusive OR +is_math_op('zerop', 1, exists). % Test for Zero + + + +end_of_file. + + + +% # 1. Length of a List +% % Normal Recursive +% prolog +len([], 0). +len([_|T], N) :- + len(T, X), + N is X + 1. +% + +% % With Accumulator +% prolog +len_acc(L, N) :- + len_acc(L, 0, N). + +len_acc([], Acc, Acc). +len_acc([_|T], Acc, N) :- + NewAcc is Acc + 1, + len_acc(T, NewAcc, N). +% + +% # 2. Sum of a List +% % Normal Recursive +% prolog +sum([], 0). +sum([H|T], S) :- + sum(T, X), + S is X + H. +% + +% % With Accumulator +% prolog +sum_acc(L, S) :- + sum_acc(L, 0, S). + +sum_acc([], Acc, Acc). +sum_acc([H|T], Acc, S) :- + NewAcc is Acc + H, + sum_acc(T, NewAcc, S). +% + +% # 3. Factorial +% % Normal Recursive +% prolog +factorial(0, 1). +factorial(N, F) :- + N > 0, + X is N - 1, + factorial(X, Y), + F is N * Y. +% + +% % With Accumulator +% prolog +factorial_acc(N, F) :- + factorial_acc(N, 1, F). + +factorial_acc(0, Acc, Acc). +factorial_acc(N, Acc, F) :- + N > 0, + NewAcc is Acc * N, + NewN is N - 1, + factorial_acc(NewN, NewAcc, F). +% + +% # 4. Reverse List +% % Normal Recursive +% prolog +reverse_list([], []). +reverse_list([H|T], R) :- + reverse_list(T, RevT), + append(RevT, [H], R). +% + +% % With Accumulator +% prolog +reverse_list_acc(L, R) :- + reverse_list_acc(L, [], R). + +reverse_list_acc([], Acc, Acc). +reverse_list_acc([H|T], Acc, R) :- + reverse_list_acc(T, [H|Acc], R). +% + +% # 5. Fibonacci +% % Normal Recursive +% prolog +fibonacci(0, 0). +fibonacci(1, 1). +fibonacci(N, F) :- + N > 1, + N1 is N - 1, + N2 is N - 2, + fibonacci(N1, F1), + fibonacci(N2, F2), + F is F1 + F2. +% + +% % With Accumulator +% prolog +fibonacci_acc(N, F) :- + fibonacci_acc(N, 0, 1, F). + +fibonacci_acc(0, A, _, A). +fibonacci_acc(N, A, B, F) :- + N > 0, + NewN is N - 1, + NewB is A + B, + fibonacci_acc(NewN, B, NewB, F). +% + + + +% 6. Find an Element in a List +% # Normal Recursive +% prolog +element_in_list(X, [X|_]). +element_in_list(X, [_|T]) :- element_in_list(X, T). +% + +% # With Accumulator +% prolog +element_in_list_acc(X, L) :- element_in_list_acc(X, L, false). + +element_in_list_acc(X, [], Acc) :- Acc. +element_in_list_acc(X, [X|_], _) :- true. +element_in_list_acc(X, [_|T], Acc) :- element_in_list_acc(X, T, Acc). +% + +% 7. Check if a List is a Palindrome +% # Normal Recursive +% prolog +is_palindrome(L) :- reverse(L, L). +% + +% # With Accumulator +% prolog +is_palindrome_acc(L) :- reverse_acc(L, [], L). + +reverse_acc([], Acc, Acc). +reverse_acc([H|T], Acc, R) :- reverse_acc(T, [H|Acc], R). +% + +% 8. Calculate the Product of All Elements in a List +% # Normal Recursive +% prolog +product_list([], 1). +product_list([H|T], P) :- + product_list(T, Temp), + P is H * Temp. +% + +% # With Accumulator +% prolog +product_list_acc(L, P) :- product_list_acc(L, 1, P). + +product_list_acc([], Acc, Acc). +product_list_acc([H|T], Acc, P) :- + NewAcc is Acc * H, + product_list_acc(T, NewAcc, P). +% + +% 9. Find the Nth Element of a List +% # Normal Recursive +% prolog +nth_element(1, [H|_], H). +nth_element(N, [_|T], X) :- + N > 1, + M is N - 1, + nth_element(M, T, X). +% + +% # With Accumulator +% prolog +nth_element_acc(N, L, X) :- nth_element_acc(N, L, 1, X). + +nth_element_acc(N, [H|_], N, H). +nth_element_acc(N, [_|T], Acc, X) :- + NewAcc is Acc + 1, + nth_element_acc(N, T, NewAcc, X). +% + +% 10. Count the Occurrences of an Element in a List +% # Normal Recursive +% prolog +count_occurrences(_, [], 0). +count_occurrences(X, [X|T], N) :- + count_occurrences(X, T, M), + N is M + 1. +count_occurrences(X, [Y|T], N) :- + X \= Y, + count_occurrences(X, T, N). +% + +% # With Accumulator +% prolog +count_occurrences_acc(X, L, N) :- count_occurrences_acc(X, L, 0, N). + +count_occurrences_acc(_, [], Acc, Acc). +count_occurrences_acc(X, [X|T], Acc, N) :- + NewAcc is Acc + 1, + count_occurrences_acc(X, T, NewAcc, N). +count_occurrences_acc(X, [Y|T], Acc, N) :- + X \= Y, + count_occurrences_acc(X, T, Acc, N). +% + +% 11. Calculate the Greatest Common Divisor of Two Numbers +% # Normal Recursive +% prolog +gcd(A, 0, A) :- A > 0. +gcd(A, B, GCD) :- + B > 0, + R is A mod B, + gcd(B, R, GCD). +% + +% # With Accumulator +% prolog +gcd_acc(A, B, GCD) :- gcd_acc(A, B, 1, GCD). + +gcd_acc(A, 0, Acc, Acc) :- A > 0. +gcd_acc(A, B, Acc, GCD) :- + B > 0, + R is A mod B, + NewAcc is B * Acc, + gcd_acc(B, R, NewAcc, GCD). +% + +% 12. Check if a Number is Prime +% # Normal Recursive +% prolog +is_prime(2). +is_prime(N) :- + N > 2, + \+ (between(2, sqrt(N), X), N mod X =:= 0). +% + +% # With Accumulator +% prolog +is_prime_acc(N) :- is_prime_acc(N, 2). + +is_prime_acc(2, 2). +is_prime_acc(N, Acc) :- + N > 2, + ( + (Acc * Acc > N, !); + (N mod Acc =\= 0, NewAcc is Acc + 1, is_prime_acc(N, NewAcc)) + ). +% + +% 13. Merge Two Sorted Lists into a Sorted List +% # Normal Recursive +% prolog +merge_sorted([], L, L). +merge_sorted(L, [], L). +merge_sorted([H1|T1], [H2|T2], [H1|M]) :- + H1 =< H2, + merge_sorted(T1, [H2|T2], M). +merge_sorted([H1|T1], [H2|T2], [H2|M]) :- + H1 > H2, + merge_sorted([H1|T1], T2, M). +% + +% # With Accumulator +% prolog +merge_sorted_acc(L1, L2, L) :- merge_sorted_acc(L1, L2, [], L). + +merge_sorted_acc([], L, Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc(L, [], Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 =< H2, + merge_sorted_acc(T1, [H2|T2], [H1|Acc], M). +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 > H2, + merge_sorted_acc([H1|T1], T2, [H2|Acc], M). + +% + +% 14. Find the Last Element of a List +% # Normal Recursive +% prolog +last_element([H], H). +last_element([_|T], X) :- last_element(T, X). +% + +% # With Accumulator +% prolog +last_element_acc([H|T], X) :- last_element_acc(T, H, X). + +last_element_acc([], Acc, Acc). +last_element_acc([H|T], _, X) :- last_element_acc(T, H, X). +% + +% 15. Remove Duplicate Elements from a List +% # Normal Recursive +% prolog +remove_duplicates([], []). +remove_duplicates([H|T], [H|T1]) :- \+ member(H, T), remove_duplicates(T, T1). +remove_duplicates([_|T], T1) :- remove_duplicates(T, T1). +% + +% # With Accumulator +% prolog +remove_duplicates_acc(L, R) :- remove_duplicates_acc(L, [], R). + +remove_duplicates_acc([], Acc, Acc). +remove_duplicates_acc([H|T], Acc, R) :- + (member(H, Acc) -> remove_duplicates_acc(T, Acc, R); + remove_duplicates_acc(T, [H|Acc], R)). +% + +% 16. Check if a Binary Tree is Balanced +% # Normal Recursive +% prolog +is_balanced(null). +is_balanced(tree(L, _, R)) :- + height(L, Hl), + height(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + is_balanced(L), + is_balanced(R). +% + +% # With Accumulator +% prolog +is_balanced_acc(T) :- is_balanced_acc(T, 0). + +is_balanced_acc(null, 0). +is_balanced_acc(tree(L, _, R), H) :- + is_balanced_acc(L, Hl), + is_balanced_acc(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + H is max(Hl, Hr) + 1. +% + +% 17. Calculate the Height of a Binary Tree +% # Normal Recursive +% prolog +height(null, 0). +height(tree(L, _, R), H) :- + height(L, Hl), + height(R, Hr), + H is max(Hl, Hr) + 1. +% + +% # With Accumulator +% prolog +height_acc(T, H) :- height_acc(T, 0, H). + +height_acc(null, Acc, Acc). +height_acc(tree(L, _, R), Acc, H) :- + NewAcc is Acc + 1, + height_acc(L, NewAcc, Hl), + height_acc(R, NewAcc, Hr), + H is max(Hl, Hr). +% + +% 18. Search for an Element in a Binary Search Tree +% # Normal Recursive +% prolog +search_bst(tree(_, X, _), X). +search_bst(tree(L, Y, _), X) :- + X < Y, + search_bst(L, X). +search_bst(tree(_, Y, R), X) :- + X > Y, + search_bst(R, X). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +search_bst_acc(Tree, X) :- search_bst(Tree, X). +% + +% 19. Insert an Element into a Binary Search Tree +% # Normal Recursive +% prolog +insert_bst(null, X, tree(null, X, null)). +insert_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + insert_bst(L, X, L1). +insert_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + insert_bst(R, X, R1). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the insertion path is already determined by the BST property. +insert_bst_acc(Tree, X, NewTree) :- insert_bst(Tree, X, NewTree). +% + +% 20. Delete an Element from a Binary Search Tree +% # Normal Recursive +% prolog +delete_bst(Tree, X, NewTree) :- + remove_bst(Tree, X, NewTree). + +remove_bst(tree(L, X, R), X, Merged) :- merge_trees(L, R, Merged), !. +remove_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + remove_bst(L, X, L1). +remove_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + remove_bst(R, X, R1). + +merge_trees(null, Tree, Tree). +merge_trees(Tree, null, Tree). +merge_trees(tree(L1, X, R1), tree(L2, Y, R2), tree(Merged, Y, R2)) :- + merge_trees(tree(L1, X, R1), L2, Merged). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the deletion path is already determined by the BST property. +delete_bst_acc(Tree, X, NewTree) :- delete_bst(Tree, X, NewTree). +% + +% 21. Find the Lowest Common Ancestor in a Binary Search Tree +% # Normal Recursive +% prolog +lowest_common_ancestor(tree(_, Y, _), X, Z, Y) :- + X < Y, Z > Y; + X > Y, Z < Y. +lowest_common_ancestor(tree(L, Y, _), X, Z, LCA) :- + X < Y, Z < Y, + lowest_common_ancestor(L, X, Z, LCA). +lowest_common_ancestor(tree(_, Y, R), X, Z, LCA) :- + X > Y, Z > Y, + + + lowest_common_ancestor(R, X, Z, LCA). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +lowest_common_ancestor_acc(Tree, X, Z, LCA) :- lowest_common_ancestor(Tree, X, Z, LCA). +% + +% 22. Check if a Graph is Cyclic +% For graphs, it's better to represent them in a Prolog-friendly format, such as adjacency lists. I will use a representation where each node has a list of its neighbors. +% # Normal Recursive +% prolog +is_cyclic(Graph) :- + member(Vertex-_, Graph), + dfs(Vertex, Graph, [Vertex], _), !. + +dfs(Vertex, Graph, Visited, [Vertex|Visited]) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + member(Neighbor, Visited), !. +dfs(Vertex, Graph, Visited, FinalVisited) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + \+ member(Neighbor, Visited), + dfs(Neighbor, Graph, [Neighbor|Visited], FinalVisited). +% + +% # With Accumulator +% prolog +% Due to the way depth-first search works, a typical accumulator wouldn't be very effective. +% The visited list already acts like an accumulator. +is_cyclic_acc(Graph) :- is_cyclic(Graph). +% + +% 23. Perform a Depth-First Search on a Graph +% # Normal Recursive +% prolog +dfs_graph(Vertex, Graph) :- dfs_vertex(Vertex, Graph, []). + +dfs_vertex(Vertex, _, Visited) :- member(Vertex, Visited), !. +dfs_vertex(Vertex, Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + dfs_neighbors(Neighbors, Graph, [Vertex|Visited]). + +dfs_neighbors([], _, _). +dfs_neighbors([Neighbor|Neighbors], Graph, Visited) :- + dfs_vertex(Neighbor, Graph, Visited), + dfs_neighbors(Neighbors, Graph, Visited). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +dfs_graph_acc(Vertex, Graph) :- dfs_graph(Vertex, Graph). +% + +% 24. Perform a Breadth-First Search on a Graph +% # Normal Recursive +% prolog +bfs_graph(Vertex, Graph) :- + bfs([Vertex], Graph, [Vertex]). + +bfs([], _, _). +bfs([Vertex|Vertices], Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited), + append(Vertices, NewNeighbors, NewVertices), + bfs(NewVertices, Graph, NewVisited). + +filter_unvisited([], Visited, [], Visited). +filter_unvisited([Neighbor|Neighbors], Visited, NewNeighbors, NewVisited) :- + (member(Neighbor, Visited) -> + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited); + filter_unvisited(Neighbors, [Neighbor|Visited], NewNeighbors, [Neighbor|NewVisited]) + ). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +bfs_graph_acc(Vertex, Graph) :- bfs_graph(Vertex, Graph). +% + +% 25. Check if a Graph is Connected +% # Normal Recursive +% prolog +is_connected(Graph) :- + Graph = [Vertex-_|_], + dfs_graph(Vertex, Graph), + \+ (member(OtherVertex-_, Graph), \+ member(OtherVertex, Visited)), !. +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +is_connected_acc(Graph) :- is_connected(Graph). +% + +% 26. Find the Shortest Path between Two Nodes in a Graph +% # Normal Recursive +% prolog +shortest_path(Start, End, Graph, Path) :- + shortest_path([Start], End, Graph, [Start], Path). + +shortest_path(_, End, _, Visited, ReversePath) :- + reverse(ReversePath, [End|_]), !. +shortest_path(Vertices, End, Graph, Visited, Path) :- + adjacent_unvisited(Vertices, Graph, Visited, Adjacent), + append(Visited, Adjacent, NewVisited), + append(Vertices, Adjacent, NewVertices), + shortest_path(NewVertices, End, Graph, NewVisited, Path). +% + +% # With Accumulator +% prolog +% The visited list and the list of vertices to explore act as accumulators. +shortest_path_acc(Start, End, Graph, Path) :- shortest_path(Start, End, Graph, Path). +% + +% 27. Check if a String is a Palindrome +% # Normal Recursive +% prolog +is_string_palindrome(Str) :- string_chars(Str, Chars), is_palindrome(Chars). +% + +% # With Accumulator +% prolog +is_string_pal + +indrome_acc(Str) :- string_chars(Str, Chars), is_palindrome_acc(Chars, []). +% + +% 28. Compute the Edit Distance between Two Strings +% # Normal Recursive +% prolog +edit_distance([], [], 0). +edit_distance([_|T1], [], D) :- + edit_distance(T1, [], D1), + D is D1 + 1. +edit_distance([], [_|T2], D) :- + edit_distance([], T2, D1), + D is D1 + 1. +edit_distance([H1|T1], [H2|T2], D) :- + edit_distance(T1, T2, D1), + D is D1 + (H1 \= H2). +% + +% # With Accumulator +% prolog +edit_distance_acc(S1, S2, D) :- edit_distance_acc(S1, S2, 0, D). + +edit_distance_acc([], [], Acc, Acc). +edit_distance_acc([_|T1], [], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc(T1, [], NewAcc, D). +edit_distance_acc([], [_|T2], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc([], T2, NewAcc, D). +edit_distance_acc([H1|T1], [H2|T2], Acc, D) :- + NewAcc is Acc + (H1 \= H2), + edit_distance_acc(T1, T2, NewAcc, D). +% + +% 29. Find the Longest Common Subsequence of Two Strings +% # Normal Recursive +% prolog +lcs([], _, []). +lcs(_, [], []). +lcs([H|T1], [H|T2], [H|Lcs]) :- lcs(T1, T2, Lcs), !. +lcs(S1, [_|T2], Lcs) :- lcs(S1, T2, Lcs). +lcs([_|T1], S2, Lcs) :- lcs(T1, S2, Lcs). +% + +% # With Accumulator +% prolog +lcs_acc(S1, S2, Lcs) :- lcs_acc(S1, S2, [], Lcs). + +lcs_acc([], _, Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc(_, [], Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc([H|T1], [H|T2], Acc, Lcs) :- lcs_acc(T1, T2, [H|Acc], Lcs). +lcs_acc(S1, [_|T2], Acc, Lcs) :- lcs_acc(S1, T2, Acc, Lcs). +lcs_acc([_|T1], S2, Acc, Lcs) :- lcs_acc(T1, S2, Acc, Lcs). +% + +% 30. Find the Longest Common Substring of Two Strings +% # Normal Recursive +% prolog +longest_common_substring(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string(Subs, Lcs). + +substring(Str, Sub) :- + append(_, Rest, Str), + append(Sub, _, Rest). + +longest_string([H|T], Longest) :- + longest_string(T, H, Longest). + +longest_string([], Acc, Acc). +longest_string([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string(T, H, Longest); longest_string(T, Acc, Longest)). +% + +% # With Accumulator +% prolog +longest_common_substring_acc(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string_acc(Subs, [], Lcs). + +longest_string_acc([], Acc, Acc). +longest_string_acc([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string_acc(T, H, Longest); longest_string_acc(T, Acc, Longest)). +% + + diff --git a/metta_vspace/pyswip_lng/metta_eval.new b/metta_vspace/pyswip-12-15/metta_eval.new similarity index 100% rename from metta_vspace/pyswip_lng/metta_eval.new rename to metta_vspace/pyswip-12-15/metta_eval.new diff --git a/metta_vspace/pyswip_lng/metta_eval.old b/metta_vspace/pyswip-12-15/metta_eval.old similarity index 100% rename from metta_vspace/pyswip_lng/metta_eval.old rename to metta_vspace/pyswip-12-15/metta_eval.old diff --git a/metta_vspace/pyswip-12-15/metta_eval.pl b/metta_vspace/pyswip-12-15/metta_eval.pl new file mode 100755 index 00000000..a4657e79 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_eval.pl @@ -0,0 +1,1383 @@ +% +% post match modew +%:- style_check(-singleton). + +self_eval0(X):- \+ callable(X),!. +self_eval0(X):- is_valid_nb_state(X),!. +%self_eval0(X):- string(X),!. +%self_eval0(X):- number(X),!. +%self_eval0([]). +self_eval0(X):- is_metta_declaration(X),!. +self_eval0(X):- is_list(X),!,fail. +self_eval0(X):- typed_list(X,_,_),!. +%self_eval0(X):- compound(X),!. +%self_eval0(X):- is_ref(X),!,fail. +self_eval0('True'). self_eval0('False'). % self_eval0('F'). +self_eval0('Empty'). +self_eval0(X):- atom(X),!, \+ nb_current(X,_),!. + +self_eval(X):- notrace(self_eval0(X)). + +:- set_prolog_flag(access_level,system). +hyde(F/A):- functor(P,F,A), redefine_system_predicate(P),'$hide'(F/A), '$iso'(F/A). +:- 'hyde'(option_else/2). +:- 'hyde'(atom/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(notrace/1). +:- 'hyde'(var/1). +:- 'hyde'(is_list/1). +:- 'hyde'(copy_term/2). +:- 'hyde'(nonvar/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(option_value/2). + + +is_metta_declaration([F|_]):- F == '->',!. +is_metta_declaration([F,_,_|T]):- T ==[], is_metta_declaration_f(F). + +is_metta_declaration_f(F):- F == ':', !. +is_metta_declaration_f(F):- F == '=', !, + \+ (current_self(Space), is_user_defined_head_f(Space,F)). + +(F==':'; + (F=='=', \+ + \+ (current_self(Space), is_user_defined_head_f(Space,F)))). +% is_metta_declaration([F|T]):- is_list(T), is_user_defined_head([F]),!. + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y=@=XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +%current_self(Space):- nb_current(self_space,Space). + +do_expander('=',_,X,X):-!. +do_expander(':',_,X,Y):- !, get_type(X,Y)*->X=Y. + +'get_type'(Arg,Type):- 'get-type'(Arg,Type). + + + + +eval_args(X,Y):- current_self(Space), + rtrace_on_existence_error(eval(100,Space,X,Y)). +eval_args(Depth,Self,X,Y):- locally(set_prolog_flag(gc,false),rtrace_on_existence_error(eval(Depth,Self,X,Y))). +eval_args(Eq,RetType,Depth,Self,X,Y):- + locally(set_prolog_flag(gc,true), + rtrace_on_existence_error( + eval(Eq,RetType,Depth,Self,X,Y))). + +%eval(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval(Eq,RetType,X)),fail. +eval(Depth,Self,X,Y):- eval('=',_RetType,Depth,Self,X,Y). + +%eval(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!, + get_type(Depth,Self,Y,RetType), !, + eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). + +eval(_Expander,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. + +eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], number(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. + +/* +eval(Eq,RetType,Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + notrace((D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,[F|X],Y). +*/ + +eval(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + +eval(Eq,RetType,Depth,Self,X,Y):- + %notrace(allow_repeats_eval_(X)), + !, + eval_11(Eq,RetType,Depth,Self,X,Y). +eval(Eq,RetType,Depth,Self,X,Y):- + nop(notrace((no_repeats_var(YY)), + D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,X,Y), + notrace(( \+ (Y\=YY))). + +allow_repeats_eval_(_):- !. +allow_repeats_eval_(_):- option_value(no_repeats,false),!. +allow_repeats_eval_(X):- \+ is_list(X),!,fail. +allow_repeats_eval_([F|_]):- atom(F),allow_repeats_eval_f(F). +allow_repeats_eval_f('superpose'). +allow_repeats_eval_f('collapse'). + +debugging_metta(G):- notrace((is_debugging((eval))->ignore(G);true)). + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ notrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ notrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +indentq(DR,EX,AR,retval(Term)):-nonvar(Term),!,indentq(DR,EX,AR,Term). +indentq(DR,EX,AR,Term):- + \+ \+ + color_g_mesg('#2f2f2f', + notrace(ignore((( format('~N;'), + format('~` t~d~5|:', [EX]), + format('~` t~d~8|', [DR]), + forall(between(1,DR,_),write(' |')),write('-'),write(AR),with_indents(false,write_src(Term)), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,false)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + + +eval_99(Eq,RetType,Depth,Self,X,Y):- + eval_20(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Depth,Self,X,Y). + + + +eval_00(_Expander,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +eval_00(_Expander,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(Eq,RetType,Depth,Self,X,YO):- + Depth2 is Depth-1, + copy_term(X, XX), + eval_20(Eq,RetType,Depth,Self,X,M), + ((M\=@=XX, \+ self_eval(M))-> + eval_00(Eq,RetType,Depth2,Self,M,Y);Y=M), + once(if_or_else(subst_args(Eq,RetType,Depth2,Self,Y,YO), + if_or_else(finish_eval(Depth2,Self,Y,YO), + Y=YO))). + + + +eval_11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, + D1 is Depth-1, + eval_00(Eq,RetType,D1,Self,X,Y). +eval_11(Eq,RetType,Depth,Self,X,Y):- + notrace(( + + flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,eval(Self,X,'$VAR'('RET')),depth(DR)))))), + Ret=retval(fail))), + + call_cleanup(( + call(eval_00(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + + (PrintRet==1 -> indentq(Depth,'<--'(EX,Ret)) ; + notrace(ignore(((Y\=@=X, + if_t(DR<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret)))))))))), + + (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). + + + +eval_15(Eq,RetType,Depth,Self,X,Y):- !, + eval_20(Eq,RetType,Depth,Self,X,Y). + +eval_15(Eq,RetType,Depth,Self,X,Y):- + ((eval_20(Eq,RetType,Depth,Self,X,Y), + if_t(var(Y),dmsg((eval_20(Eq,RetType,Depth,Self,X,Y),var(Y)))), + nonvar(Y))*->true;(eval_failed(Depth,Self,X,Y),fail)). + + + + + + + + + + + + + +:- discontiguous eval_20/6. +:- discontiguous eval_40/6. +%:- discontiguous eval_30fz/5. +%:- discontiguous eval_31/5. +%:- discontiguous eval_60/5. + +eval_20(Eq,RetType,_Dpth,_Slf,Name,Y):- + atom(Name), !, + (nb_current(Name,X)->do_expander(Eq,RetType,X,Y); + Y = Name). + + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,do_expander(Eq,RetType,X,Y). + +% ================================================================= +% ================================================================= +% ================================================================= +% VAR HEADS/ NON-LISTS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. +%eval_20(Eq,RetType,_Dpth,Self,[X|T],Y):- T==[], atom(X), +% \+ is_user_defined_head_f(Self,X), +% do_expander(Eq,RetType,X,YY),!,Y=[YY]. + +eval_20(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + +eval_20(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). + +eval_20(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% TRACE/PRINT +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,['repl!'],Y):- !, repl,check_returnval(Eq,RetType,Y). +eval_20(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['rtrace!',Cond],Res):- !, rtrace(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['trace',Cond],Res):- !, with_debug(eval,eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['print',Cond],Res):- !, eval(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). + +eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H), !,Y=List,do_expander(Eq,RetType,Y,YY). + +eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, + eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB), + append(AA,BB,OO). +eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), + ((eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB))), + ((AA+BB)\=@=(A+B)), + eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. + + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% UNIT TESTING/assert +% ================================================================= +% ================================================================= +% ================================================================= + + +eval_20(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +eval_20(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +eval_20(Eq,RetType,Depth,Self,['assertEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected(_)],YY]). + +eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_20(Eq,RetType,Depth,Self,['assertEqualToResult',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqualToResult',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), sort(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', trace_on_pass);(TF='False', trace_on_fail)), + with_debug(metta(eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L). +%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- \+ compound(C),!,L=C. +%unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). + +%unify_lists(C,L):- \+ compound(C),!,L=C. +%unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists(L,L):-!. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +%s_empty(X):- var(X),!. +s_empty(X):- var(X),!,fail. +is_empty('Empty'). +is_empty([]). +is_empty([X]):-!,is_empty(X). +has_let_star(Y):- sub_var('let*',Y). + +equal_enough_for_test(X,Y):- is_empty(X),!,is_empty(Y). +equal_enough_for_test(X,Y):- has_let_star(Y),!,\+ is_empty(X). +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_test2(XX,YY),!. +equal_enough_for_test2(X,Y):- equal_enough(X,Y). + +equal_enouf(R,V):- is_ftVar(R), is_ftVar(V), R=V,!. +equal_enouf(X,Y):- is_empty(X),!,is_empty(Y). +equal_enouf(R,V):- R=@=V, R=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l([S1,V1|_],[S2,V2|_]):- S1 == 'State',S2 == 'State',!, equal_enouf(V1,V2). +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. + +set_last_error(_). + +% ================================================================= +% ================================================================= +% ================================================================= +% SPACE EDITING +% ================================================================= +% ================================================================= +% ================================================================= +% do_metta(_Who,What,Where,PredDecl,_TF):- do_metta(Where,What, PredDecl). +/* +eval_20(Eq,RetType,_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L1),length(L1,C1),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C1+C2. +eval_20(Eq,RetType,_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). +*/ +eval_20(Eq,RetType,Depth,Self,[Op,Space|Args],Res):- is_space_op(Op),!, + eval_space_start(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space_start(Eq,RetType,_Depth,_Self,[_Op,_Other,Atom],Res):- + (Atom == [] ; Atom =='Empty'; Atom =='Nil'),!,return_empty('False',Res),check_returnval(Eq,RetType,Res). + +eval_space_start(Eq,RetType,Depth,Self,[Op,Other|Args],Res):- + into_space(Depth,Self,Other,Space), + eval_space(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space(Eq,RetType,_Dpth,_Slf,['add-atom',Space,PredDecl],Res):- !, + do_metta(python,load,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['remove-atom',Space,PredDecl],Res):- !, + do_metta(python,unload,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-count',Space],Count):- !, + ignore(RetType='Number'),ignore(Eq='='), + findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + length(Atoms,Count). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-replace',Space,Rem,Add],TF):- !, + copy_term(Rem,RCopy), as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Space,load,Add)),TF), + check_returnval(Eq,RetType,TF). + +eval_space(Eq,RetType,_Dpth,_Slf,['get-atoms',Space],Atom):- !, + ignore(RetType='Atom'), get_metta_atom_from(Space, Atom), check_returnval(Eq,RetType,Atom). + +/* +get_atoms(_Dpth,_Slf,Other,Atom):- Other=='&self',!,get_metta_atom_from(Other, Atom). +% get_atoms_fail(Depth,Self,Other,Atom):- fail, is_asserted_space(Other),!, get_metta_atom(Eq,Other,Atom). +get_atoms(Depth,Self,Other,AtomO):- + into_space(Depth,Self,Other,Space), + once((space_to_Space(Depth,Self,Space,SpaceC), + into_listoid(SpaceC,AtomsL))), + %no_repeat_var(NRAtom), + call((member(Atom,AtomsL), + %Atom = NRAtom, + AtomO=Atom)). + +space_to_Space(_Dpth,_Slf,Space,SpaceC):- compound(Space),functor(Space,_,1),arg(1,Space,L),is_list(L),!,SpaceC=Space. +space_to_Space(_Dpth,_Slf,Space,SpaceC):- findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + SpaceC = 'hyperon::space::DynSpace'(Atoms). +*/ + +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter(Eq,Depth,Space,Goal). +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- into_space(Self,Other,Space),!, (metta_atom_iter(Eq,Depth,Space,Goal)*->true;Else=Template). + +% Match-ELSE +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- !, + ((eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template), + \+ return_empty([],Template))*->true;Template=Else). +% Match-TEMPLATE + +eval_space(Eq,_RetType,Depth,Self,['match',Other,Goal,Template],Res):- !, + metta_atom_iter(Eq,Depth,Self,Other,Goal), + Template=Res. + %finish_eval(Eq,RetType,Depth,Self,Template,Res). +/* + call(( % copy_term(Goal+Template,CGoal+CTemplate), + catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal),E, + ((wdmsg(catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal))=E)), + rtrace(try_match(Eq,RetType,Depth,Self,Other,Goal)))))), + %print(Template), + finish_eval(Eq,RetType,Depth,Self,Template,Res). + +try_match(Eq,RetType,Depth,Self,Space,Goal):- !, + % into_space(Depth,Self,Other,Space), + metta_atom_iter(Eq,Depth,Self,Space,Goal). + +%try_match(Depth,Self,Other,Goal,_Template):- get_atoms(Depth,Self,Other,Goal). % Template=Res. +metta_atom_iter(Eq,Depth,Other,Goal):- + current_self(Self), + metta_atom_iter(Eq,Depth,Self,Other,Goal). + +metta_atom_iter_fail(Depth,_Slf,Other,[Equal,[F|H],B]):- fail, '=' == Equal,!, % trace, + call(metta_defn(Eq,Other,[F|HH],BB)), + once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)), + once(eval_until_unify(Eq,RetType,Depth,Other,B,BB)). +*/ + +metta_atom_iter(Eq,_Depth,_Slf,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + (metta_defn(Eq,Other,[F|H],B)). % once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +%metta_atom_iter(Eq,Depth,_Slf,Other,[Equal,[F|H],B]):- '=' == Equal,!, % trace, + % call(metta_defn(Eq,Other,[F|HH],B)), once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, + (Y==[] -> true ; ( D2 is Depth -1, Y = [H|T], metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). +metta_atom_iter(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). + +% is this OK? +metta_atom_iter(Eq,Depth,Self,Other,H):- metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_iter(Eq,D2,Self,Other,B). +%metta_atom_iter_l2(Depth,Self,Other,H):- metta_atom_iter(Eq,Depth,Self,Other,H). +%$metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. + +eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). + + +/* + +metta_atom_iter(Eq,_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B='True')). + +metta_atom_iter(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter(Eq,D2,Other,B). +metta_atom_iter(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(Eq,D2,Self,X),metta_atom_iter(Eq,D2,Self,[And|Y]). +*/ +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. +*/ +%metta_atom_iter_ref(Other,[Eq,H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). +metta_atom_iter_ref(Other,H,Ref):-clause(asserted_metta_atom(Other,H),true,Ref). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CASE/SWITCH +% ================================================================= +% ================================================================= +% ================================================================= +% Macro: case +:- nodebug(metta(case)). + +% if there is only a void then always return nothing for each Case +eval_20(Eq,_RetType,Depth,Self,['case',A,[[Void,_]]],Res):- + '%void%' == Void, + eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. + +% if there is nothing for case just treat like a collapse +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- + %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + once(eval(Eq,_RetType2,Depth,Self,A,_)), + return_empty([],Empty). + +% Macro: case +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- + must_det_ll(T==[]), + into_case_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case(Key,Case0,Value), + if_trace(metta(case),(format('~N'),writeqln(c(Nth,Key)=Value))))),KVs),!, + eval_case(Eq,RetType,Depth,Self,A,KVs,Res). + +eval_case(Eq,CaseRetType,Depth,Self,A,KVs,Res):- + ((eval(Eq,_UnkRetType,Depth,Self,A,AA), + if_trace((case),(writeqln('case'=A))), + if_trace(metta(case),writeqln('switch'=AA)), + (select_case(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval(Eq,CaseRetType,Depth,Self,Value,Res). + + select_case(Depth,Self,AA,Cases,Value):- + (best_key(AA,Cases,Value) -> true ; + (maybe_special_keys(Depth,Self,Cases,CasES), + (best_key(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key(AA,Cases,Value):- + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(CASES,CASES):- is_list(CASES),!. + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + +% ================================================================= +% ================================================================= +% ================================================================= +% COLLAPSE/SUPERPOSE +% ================================================================= +% ================================================================= +% ================================================================= + + + +%[collapse,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['collapse',List],Res):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res). + +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call_ndet(Body,DET), + nb_setarg(1,Do_more_defs,false), + (DET==true -> ! ; true). + + +eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +/* +eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. + + +eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +*/ + +%[superpose,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['superpose',List],Res):- !, + (((is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['superpose',UList],Res) + ; ((member(E,List),eval(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))), + \+ Res = 'Empty'. + +%[sequential,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['sequential',List],Res):- !, + (((fail,is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['sequential',UList],Res) + ; ((member(E,List),eval_ne(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))). + + +get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). +get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). +eval20_failed(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval(Eq,RetType,Depth,Self, Term, Res). + + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), + eval(Eq,RetType,Depth,Self, Term, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +eval_20(_Expander,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Expander,_RetType1,Depth,Self,['nop',Expr], Empty):- !, + ignore(eval('=',_RetType2,Depth,Self,Expr,_)), + return_empty([], Empty). + +eval_20(Eq,_RetType1,Depth,Self,['do',Expr], Empty):- !, + forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + %eval_ne(Eq,_RetType2,Depth,Self,Expr,_),!, + return_empty([],Empty). + +eval_20(_Expander,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +eval_20(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + +% ================================================================= +% ================================================================= +% ================================================================= +% LET/LET* +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_until_unify(_Expander,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). + +eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). +%eval_until_eq(Eq,RetType,Depth,Self,X,Y):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +%eval_until_eq(Eq,RetType,Depth,Self,Y,X):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). +eval_until_eq(_Expander,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + ((var(EX);var(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + h((is_list(EX);is_list(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). + + eval_1change(Eq,RetType,Depth,Self,EX,EXX):- + eval_20(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- + eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_in_steps_some_change(_Expander,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). +eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), + eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, + append(L,[EXX|R],XX),eval_in_steps_or_same(Eq,RetType,Depth,Self,XX,Y). + +eval_in_steps_or_same(Eq,RetType,Depth,Self,X,Y):-eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y). +eval_in_steps_or_same(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). + + % (fail,return_empty([],Template))). + + +eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval(Eq,RetType,Depth,Self,A5,AE), AE=A)), + eval(Eq,RetType,Depth,Self,AA,OO). +%eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,eval(Eq,RetType,Depth,Self,A5,A),eval(Eq,RetType,Depth,Self,AA,AAO). +eval_20(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, eval(Eq,RetType,Depth,Self,Body,RetVal). +eval_20(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_20(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CONS/CAR/CDR +% ================================================================= +% ================================================================= +% ================================================================= + + + +into_pl_list(Var,Var):- var(Var),!. +into_pl_list(Nil,[]):- Nil == 'Nil',!. +into_pl_list([Cons,H,T],[HH|TT]):- Cons == 'Cons', !, into_pl_list(H,HH),into_pl_list(T,TT),!. +into_pl_list(X,X). + +into_metta_cons(Var,Var):- var(Var),!. +into_metta_cons([],'Nil'):-!. +into_metta_cons([Cons, A, B ],['Cons', AA, BB]):- 'Cons'==Cons, no_cons_reduce, !, + into_metta_cons(A,AA), into_metta_cons(B,BB). +into_metta_cons([H|T],['Cons',HH,TT]):- into_metta_cons(H,HH),into_metta_cons(T,TT),!. +into_metta_cons(X,X). + +into_listoid(AtomC,Atom):- AtomC = [Cons,H,T],Cons=='Cons',!, Atom=[H,[T]]. +into_listoid(AtomC,Atom):- is_list(AtomC),!,Atom=AtomC. +into_listoid(AtomC,Atom):- typed_list(AtomC,_,Atom),!. + +:- if( \+ current_predicate( typed_list / 3 )). +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +:- endif. + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + +%eval_20(Eq,RetType,Depth,Self,['flatten'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + +eval_20(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR_Y):- !, Atom=[CAR|_],!,do_expander(Eq,RetType,CAR,CAR_Y). +eval_20(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR_Y):- !, Atom=[_|CDR],!,do_expander(Eq,RetType,CDR,CDR_Y). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% STATE EDITING +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_20(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_20(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + +/* +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_nb_space,new_space,init_space). +space_type_method(is_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_nb_space,add_atom,add_nb_atom). +space_type_method(is_nb_space,remove_atom,'change-space!'). +space_type_method(is_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_nb_space,atom_count,atom_nb_count). +space_type_method(is_nb_space,get_atoms,'get-space'). +space_type_method(is_nb_space,atom_iter,atom_nb_iter). +*/ + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +% ================================================================= +% ================================================================= +% ================================================================= +% GET-TYPE +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['get-type',Val],TypeO):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, + do_expander(Eq,RetType,Type,TypeO). + + + +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% IMPORT/BIND +% ================================================================= +% ================================================================= +% ================================================================= +nb_bind(Name,Value):- nb_current(Name,Was),same_term(Value,Was),!. +nb_bind(Name,Value):- nb_setval(Name,Value),!. +eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- + (( into_space(Depth,Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal))), + check_returnval(Eq,RetType,RetVal). %RetVal=[]. +eval_20(Eq,RetType,_Depth,_Slf,['bind!',Other,['new-space']],RetVal):- atom(Other),!,assert(was_asserted_space(Other)), + return_empty([],RetVal), check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,eval(Eq,RetType,Depth,Self,Expr,Value), + nb_bind(Name,Value), return_empty(Value,RetVal))), + check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), + set_option_value(Name,Value))), return_empty(Value,RetVal), + check_returnval(Eq,RetType,RetVal))). +eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). + + +nd_ignore(Goal):- call(Goal)*->true;true. + + + + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AND/OR +% ================================================================= +% ================================================================= +% ================================================================= + +is_True(T):- T\=='False',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and(','). +is_and(S):- is_and(S,_). + +is_and(S,_):- \+ atom(S),!,fail. +is_and('and','True'). +is_and('and2','True'). +is_and('#COMMA','True'). is_and(',','True'). % is_and('And'). + +eval_20(Eq,RetType,_Dpth,_Slf,[And],True):- is_and(And,True),!,check_returnval(Eq,RetType,True). +eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, as_tf(( + eval_args(Eq,RetType,Depth,Self,X,True),eval_args(Eq,RetType,Depth,Self,Y,True)),TF). +eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, + eval_args(Eq,RetType,Depth,Self,X,True). +eval_20(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, + eval_args(Eq,RetType,Depth,Self,X,TF1), \+ \+ is_True(TF1), + eval_args(Eq,RetType,Depth,Self,[And|Y],TF). + +eval_20(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, + as_tf((eval_args(Eq,RetType,Depth,Self,X,'True');eval_args(Eq,RetType,Depth,Self,Y,'True')),TF). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% DATA FUNCTOR +% ================================================================= +% ================================================================= +% ================================================================= +eval20_failked(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- + nonvar(V),is_metta_data_functor(V),is_list(VI),!, + maplist(eval(Eq,RetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% EVAL FAILED +% ================================================================= +% ================================================================= +% ================================================================= +eval_20(Eq,RetType,Depth,Self,X,Y):- + (eval_40(Eq,RetType,Depth,Self,X,M)*-> + M=Y ; + % finish_eval(Depth,Self,M,Y); + (eval_failed(Depth,Self,X,Y)*->true;X=Y)). + +eval_failed(Depth,Self,T,TT):- + finish_eval(Depth,Self,T,TT). + +finish_eval(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +finish_eval(_Dpth,_Slf,[],[]):-!. +%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),notrace([F|LESS]\==Res),!. +%finish_eval(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +finish_eval(Depth,Self,[H|T],[HH|TT]):- !, + eval(Depth,Self,H,HH), + finish_eval(Depth,Self,T,TT). +finish_eval(Depth,Self,T,TT):- eval(Depth,Self,T,TT). + + %eval(Eq,RetType,Depth,Self,X,Y):- eval_20(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. + +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%eval_20(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +% Kills zero arity functions eval_20(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval(Eq,RetType,Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_40(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +eval_40(_Expander,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + notrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + notrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval(Eq,RetType,Depth,Self,[F|Temp],Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% PLUS/MINUS +% ================================================================= +% ================================================================= +% ================================================================= +eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). + +% ================================================================= +% ================================================================= +% ================================================================= +% METTLOG PREDEFS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_40(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), + (is_list(LL)->length(LL,Res);Res=1), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). +eval_40(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). +eval_40(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). + +% user defined function +eval_40(Eq,RetType,Depth,Self,[H|PredDecl],Res):- + notrace(is_user_defined_head(Self,H)),!, + eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, + suggest_type(RetType,'Bool'), + eq_unify(Eq,_SharedType, X, Y, Res). + +eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). + + +suggest_type(_RetType,_Bool). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- is_special_op(AE),!, + eval_70(Eq,RetType,Depth,Self,[AE|More],Res), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- + maplist(must_eval_args(Eq,_,Depth,Self),More,Adjusted), + eval_70(Eq,RetType,Depth,Self,[AE|Adjusted],Res), + check_returnval(Eq,RetType,Res). + +must_eval_args(Eq,RetType,Depth,Self,More,Adjusted):- + (eval_args(Eq,RetType,Depth,Self,More,Adjusted)*->true; + (with_debug(eval,eval_args(Eq,RetType,Depth,Self,More,Adjusted))*-> true; + ( + nl,writeq(eval_args(Eq,RetType,Depth,Self,More,Adjusted)),writeln('.'), + (More=Adjusted -> true ; + (trace, throw(must_eval_args(Eq,RetType,Depth,Self,More,Adjusted))))))). + + + + +eval_70(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call(Body),nb_setarg(1,Do_more_defs,false). + + +% ================================================================= +% ================================================================= +% ================================================================= +% inherited by system +% ================================================================= +% ================================================================= +% ================================================================= +is_system_pred(S):- atom(S),atom_concat(_,'!',S). + + + +eval_80(_Expander,_RetType,_Dpth,_Slf,LESS,Res):- + notrace((ground(LESS),once((eval_selfless(LESS,Res),notrace(LESS\==Res))))),!. + + +% predicate inherited by system +eval_80(Eq,RetType,_Depth,_Self,[AE|More],TF):- + is_system_pred(AE), + length(More,Len), + is_syspred(AE,Len,Pred), + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted), + More = Adjusted, + catch_warn(efbug(show_call,eval_call(apply(Pred,Adjusted),TF))), + check_returnval(Eq,RetType,TF). + +:- if( \+ current_predicate( adjust_args / 2 )). + + :- discontiguous eval_80/6. + +is_user_defined_goal(Self,Head):- + is_user_defined_head(Self,Head). + +:- endif. + +eval_call(S,TF):- + s2p(S,P), !, + dmsg(eval_call(P,'$VAR'('TF'))),as_tf(P,TF). + +eval_80(Eq,RetType,_Depth,_Self,[AE|More],Res):- + is_system_pred(AE), + length([AE|More],Len), + is_syspred(AE,Len,Pred), + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted),!, + More = Adjusted, + append(Adjusted,[Res],Args),!, + efbug(show_call,catch_warn(apply(Pred,Args))), + check_returnval(Eq,RetType,Res). + +:- if( \+ current_predicate( check_returnval / 3 )). +check_returnval(_,_RetType,_TF). +:- endif. + +:- if( \+ current_predicate( adjust_args / 5 )). +adjust_args(_Depth,_Self,_V,VI,VI). +:- endif. + +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- + eval_67(Eq,RetType,Depth,Self,PredDecl,Res). + + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- quietly(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch_err(G,error(_,_),fail)). + + +as_tf(G,TF):- G\=[_|_], catch_nowarn((call(G)*->TF='True';TF='False')). +%eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +%eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X=true; + (fail,eval_67(Eq,RetType,Depth,Self,H,B))). + + +%eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Eq,Self,H,B). +eval_64(Eq,_RetType,_Dpth,Self,H,B):- + Eq='match', call(metta_atom(Self,H)),B=H. + + +eval_64(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + notrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + [Left|T1] \=@= [[H|Start]|T1], + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- % no weird template matchers + % forall(metta_defn(Eq,Self,[H|Template],_), + % maplist(not_template_arg,Template)), + Eq='=', + (metta_defn(Eq,Self,[H|Args],B0)*->true;(fail,[H|Args]=B0)), + light_eval(Depth,Self,B0,B). + %(eval(Eq,RetType,Depth,Self,B,Y);metta_atom_iter(Depth,Self,Y)). +% Use the first template match +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- fail, + Eq='=', + (metta_defn(Eq,Self,[H|Template],B0),Args=Template), + light_eval(Depth,Self,B0,B). + + +light_eval(_Depth,_Self,B,B). + +not_template_arg(TArg):- var(TArg), !, \+ attvar(TArg). +not_template_arg(TArg):- atomic(TArg),!. +%not_template_arg(TArg):- is_list(TArg),!,fail. + + +% Has argument that is headed by the same function +eval_67(Eq,RetType,Depth,Self,[H1|Args],Res):- + notrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + notrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_60(Eq,RetType,Depth,Self,[H1|NewArgs],Res). + +eval_67(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + notrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to eval +eval_67(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + notrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + notrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_60(Eq,RetType,Depth,Self,[F|Temp],Res). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AGREGATES +% ================================================================= +% ================================================================= +% ================================================================= + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). + +%bagof_eval(Eq,RetType,Depth,Self,X,L):- bagof_eval(Eq,RetType,_RT,Depth,Self,X,L). + + +%bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. +bagof_eval(_Expander,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(Eq,RetType,Depth,Self,X,L):- + findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). + +setof_eval(Depth,Self,X,L):- setof_eval('=',_RT,Depth,Self,X,L). +setof_eval(Eq,RetType,Depth,Self,X,S):- bagof_eval(Eq,RetType,Depth,Self,X,L), + sort(L,S). + + +eval_ne(Eq,RetType,Depth,Self,X,E):- + eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E). + + +:- ensure_loaded(metta_subst). + + diff --git a/metta_vspace/pyswip-12-15/metta_eval.prev b/metta_vspace/pyswip-12-15/metta_eval.prev new file mode 100755 index 00000000..65c8ad88 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_eval.prev @@ -0,0 +1,1549 @@ +% +% post match modew +%:- style_check(-singleton). + +self_eval0(X):- \+ callable(X),!. +self_eval0(X):- is_valid_nb_state(X),!. +%self_eval0(X):- string(X),!. +%self_eval0(X):- number(X),!. +%self_eval0([]). +self_eval0(X):- is_metta_declaration(X),!. +self_eval0(X):- is_list(X),!,fail. +self_eval0(X):- typed_list(X,_,_),!. +%self_eval0(X):- compound(X),!. +%self_eval0(X):- is_ref(X),!,fail. +self_eval0('True'). self_eval0('False'). % self_eval0('F'). +self_eval0('Empty'). +self_eval0(X):- atom(X),!, \+ nb_current(X,_),!. + +self_eval(X):- notrace(self_eval0(X)). + +:- set_prolog_flag(access_level,system). +hyde(F/A):- functor(P,F,A), redefine_system_predicate(P),'$hide'(F/A), '$iso'(F/A). +:- 'hyde'(option_else/2). +:- 'hyde'(atom/1). +:- 'hyde'(quietly/1). +:- 'hyde'(notrace/1). +:- 'hyde'(var/1). +:- 'hyde'(is_list/1). +:- 'hyde'(copy_term/2). +:- 'hyde'(nonvar/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(option_value/2). + + +is_metta_declaration([F|_]):- F == '->',!. +is_metta_declaration([F,_,_|T]):- T ==[], is_metta_declaration_f(F). + +is_metta_declaration_f(F):- F == ':', !. +is_metta_declaration_f(F):- F == '=', !, + \+ (current_self(Space), is_user_defined_head_f(Space,F)). + +(F==':'; + (F=='=', \+ + \+ (current_self(Space), is_user_defined_head_f(Space,F)))). +% is_metta_declaration([F|T]):- is_list(T), is_user_defined_head([F]),!. + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y=@=XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +current_self(Space):- nb_current(self_space,Space). + +do_expander('=',_,X,X):-!. +do_expander(':',_,X,Y):- !, get_type(X,Y)*->X=Y. + +'get_type'(Arg,Type):- 'get-type'(Arg,Type). + + + + +eval_args(X,Y):- current_self(Space), + rtrace_on_existence_error(eval(100,Space,X,Y)). +eval_args(Depth,Self,X,Y):- locally(set_prolog_flag(gc,false),rtrace_on_existence_error(eval(Depth,Self,X,Y))). +eval_args(Eq,RetType,Depth,Self,X,Y):- + locally(set_prolog_flag(gc,true), + rtrace_on_existence_error( + eval(Eq,RetType,Depth,Self,X,Y))). + +%eval(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval(Eq,RetType,X)),fail. +eval(Depth,Self,X,Y):- eval('=',_RetType,Depth,Self,X,Y). + +%eval(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!, + get_type(Depth,Self,Y,RetType), !, + eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). + +eval(_Eq,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. + +eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], number(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. + +/* +eval(Eq,RetType,Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + notrace((D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,[F|X],Y). +*/ + +eval(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + +eval(Eq,RetType,Depth,Self,X,Y):- + %notrace(allow_repeats_eval_(X)), + !, + eval_11(Eq,RetType,Depth,Self,X,Y). +eval(Eq,RetType,Depth,Self,X,Y):- + nop(notrace((no_repeats_var(YY)), + D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,X,Y), + notrace(( \+ (Y\=YY))). + +allow_repeats_eval_(_):- !. +allow_repeats_eval_(_):- option_value(no_repeats,false),!. +allow_repeats_eval_(X):- \+ is_list(X),!,fail. +allow_repeats_eval_([F|_]):- atom(F),allow_repeats_eval_f(F). +allow_repeats_eval_f('superpose'). +allow_repeats_eval_f('collapse'). + +debugging_metta(G):- notrace((is_debugging((eval))->ignore(G);true)). + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,false)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + + +eval_99(Eq,RetType,Depth,Self,X,Y):- + eval_20(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Depth,Self,X,Y). + + + +eval_00(_Eq,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +eval_00(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(Eq,RetType,Depth,Self,X,YO):- + Depth2 is Depth-1, + copy_term(X, XX), + eval_20(Eq,RetType,Depth,Self,X,M), + ((M\=@=XX, \+ self_eval(M))-> + eval_00(Eq,RetType,Depth2,Self,M,Y);Y=M), + once(if_or_else(subst_args(Eq,RetType,Depth2,Self,Y,YO), + if_or_else(finish_eval(Depth2,Self,Y,YO), + Y=YO))). + + + +eval_11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, + D1 is Depth-1, + eval_00(Eq,RetType,D1,Self,X,Y). +eval_11(Eq,RetType,Depth,Self,X,Y):- + notrace(( + + flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,eval(Self,X,'$VAR'('RET')),depth(DR)))))), + Ret=retval(fail))), + + call_cleanup(( + dcall(eval_00(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + + (PrintRet==1 -> indentq(Depth,'<--'(EX,Ret)) ; + mnotrace(ignore(((Y\=@=X, + if_t(DR<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret)))))))))), + + (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). + + + +eval_15(Eq,RetType,Depth,Self,X,Y):- !, + eval_20(Eq,RetType,Depth,Self,X,Y). + +eval_15(Eq,RetType,Depth,Self,X,Y):- + ((eval_20(Eq,RetType,Depth,Self,X,Y), + if_t(var(Y),dmsg((eval_20(Eq,RetType,Depth,Self,X,Y),var(Y)))), + nonvar(Y))*->true;(eval_failed(Depth,Self,X,Y),fail)). + + + + + + + + + + + + + +:- discontiguous eval_20/6. +:- discontiguous eval_40/6. +%:- discontiguous eval_30fz/5. +%:- discontiguous eval_31/5. +%:- discontiguous eval_60/5. + +eval_20(Eq,RetType,_Dpth,_Slf,Name,Y):- + atom(Name), !, + (nb_current(Name,X)->do_expander(Eq,RetType,X,Y); + Y = Name). + + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,do_expander(Eq,RetType,X,Y). + +% ================================================================= +% ================================================================= +% ================================================================= +% VAR HEADS/ NON-LISTS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. +%eval_20(Eq,RetType,_Dpth,Self,[X|T],Y):- T==[], atom(X), +% \+ is_user_defined_head_f(Self,X), +% do_expander(Eq,RetType,X,YY),!,Y=[YY]. + +eval_20(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + +eval_20(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). + +eval_20(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% TRACE/PRINT +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,['repl!'],Y):- !, repl,check_returnval(Eq,RetType,Y). +eval_20(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['rtrace!',Cond],Res):- !, rtrace(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['trace',Cond],Res):- !, with_debug(eval,eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['print',Cond],Res):- !, eval(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). + +eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H), !,Y=List,do_expander(Eq,RetType,Y,YY). + +eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, + eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB), + append(AA,BB,OO). +eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), + ((eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB))), + ((AA+BB)\=@=(A+B)), + eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. + + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% UNIT TESTING/assert +% ================================================================= +% ================================================================= +% ================================================================= + + +eval_20(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +eval_20(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +eval_20(Eq,RetType,Depth,Self,['assertEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected(_)],YY]). + +eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_20(Eq,RetType,Depth,Self,['assertEqualToResult',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqualToResult',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), sort(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', trace_on_pass);(TF='False', trace_on_fail)), + with_debug(metta(eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L). +%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- \+ compound(C),!,L=C. +%unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). + +%unify_lists(C,L):- \+ compound(C),!,L=C. +%unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists(L,L):-!. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +%s_empty(X):- var(X),!. +s_empty(X):- var(X),!,fail. +is_empty('Empty'). +is_empty([]). +is_empty([X]):-!,is_empty(X). +has_let_star(Y):- sub_var('let*',Y). + +equal_enough_for_test(X,Y):- is_empty(X),!,is_empty(Y). +equal_enough_for_test(X,Y):- has_let_star(Y),!,\+ is_empty(X). +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_test2(XX,YY),!. +equal_enough_for_test2(X,Y):- equal_enough(X,Y). + +equal_enouf(R,V):- is_ftVar(R), is_ftVar(V), R=V,!. +equal_enouf(X,Y):- is_empty(X),!,is_empty(Y). +equal_enouf(R,V):- R=@=V, R=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l([S1,V1|_],[S2,V2|_]):- S1 == 'State',S2 == 'State',!, equal_enouf(V1,V2). +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. + +set_last_error(_). + +% ================================================================= +% ================================================================= +% ================================================================= +% SPACE EDITING +% ================================================================= +% ================================================================= +% ================================================================= +% do_metta(_Who,What,Where,PredDecl,_TF):- do_metta(Where,What, PredDecl). +/* +eval_20(Eq,RetType,_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L1),length(L1,C1),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C1+C2. +eval_20(Eq,RetType,_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). +*/ +eval_20(Eq,RetType,Depth,Self,[Op,Space|Args],Res):- is_space_op(Op),!, + eval_space_start(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space_start(Eq,RetType,_Depth,_Self,[_Op,_Other,Atom],Res):- + (Atom == [] ; Atom =='Empty'; Atom =='Nil'),!,return_empty('False',Res),check_returnval(Eq,RetType,Res). + +eval_space_start(Eq,RetType,Depth,Self,[Op,Other|Args],Res):- + into_space(Depth,Self,Other,Space), + eval_space(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space(Eq,RetType,_Dpth,_Slf,['add-atom',Space,PredDecl],Res):- !, + do_metta(python,load,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['remove-atom',Space,PredDecl],Res):- !, + do_metta(python,unload,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-count',Space],Count):- !, + ignore(RetType='Number'),ignore(Eq='='), + findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + length(Atoms,Count). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-replace',Space,Rem,Add],TF):- !, + copy_term(Rem,RCopy), as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Space,load,Add)),TF), + check_returnval(Eq,RetType,TF). + +eval_space(Eq,RetType,_Dpth,_Slf,['get-atoms',Space],Atom):- !, + ignore(RetType='Atom'), get_metta_atom_from(Space, Atom), check_returnval(Eq,RetType,Atom). + +/* +get_atoms(_Dpth,_Slf,Other,Atom):- Other=='&self',!,get_metta_atom_from(Other, Atom). +% get_atoms_fail(Depth,Self,Other,Atom):- fail, is_asserted_space(Other),!, get_metta_atom(Eq,Other,Atom). +get_atoms(Depth,Self,Other,AtomO):- + into_space(Depth,Self,Other,Space), + once((space_to_Space(Depth,Self,Space,SpaceC), + into_listoid(SpaceC,AtomsL))), + %no_repeat_var(NRAtom), + dcall((member(Atom,AtomsL), + %Atom = NRAtom, + AtomO=Atom)). + +space_to_Space(_Dpth,_Slf,Space,SpaceC):- compound(Space),functor(Space,_,1),arg(1,Space,L),is_list(L),!,SpaceC=Space. +space_to_Space(_Dpth,_Slf,Space,SpaceC):- findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + SpaceC = 'hyperon::space::DynSpace'(Atoms). +*/ + +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter(Eq,Depth,Space,Goal). +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- into_space(Self,Other,Space),!, (metta_atom_iter(Eq,Depth,Space,Goal)*->true;Else=Template). + +% Match-ELSE +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- !, + ((eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template), + \+ return_empty([],Template))*->true;Template=Else). +% Match-TEMPLATE + +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Res):- !, + metta_atom_iter(Eq,Depth,Self,Other,Goal), + Template=Res. + %finish_eval(Eq,RetType,Depth,Self,Template,Res). +/* + dcall(( % copy_term(Goal+Template,CGoal+CTemplate), + catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal),E, + ((wdmsg(catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal))=E)), + rtrace(try_match(Eq,RetType,Depth,Self,Other,Goal)))))), + %print(Template), + finish_eval(Eq,RetType,Depth,Self,Template,Res). + +try_match(Eq,RetType,Depth,Self,Space,Goal):- !, + % into_space(Depth,Self,Other,Space), + metta_atom_iter(Eq,Depth,Self,Space,Goal). + +%try_match(Depth,Self,Other,Goal,_Template):- get_atoms(Depth,Self,Other,Goal). % Template=Res. +metta_atom_iter(Eq,Depth,Other,Goal):- + current_self(Self), + metta_atom_iter(Eq,Depth,Self,Other,Goal). + +metta_atom_iter_fail(Depth,_Slf,Other,[Equal,[F|H],B]):- fail, '=' == Equal,!, % trace, + dcall(metta_defn(Eq,Other,[F|HH],BB)), + once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)), + once(eval_until_unify(Eq,RetType,Depth,Other,B,BB)). +*/ + +metta_atom_iter(Eq,_Depth,_Slf,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + (metta_defn(Eq,Other,[F|H],B)). % once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +%metta_atom_iter(Eq,Depth,_Slf,Other,[Equal,[F|H],B]):- '=' == Equal,!, % trace, + % dcall(metta_defn(Eq,Other,[F|HH],B)), once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. +% And +metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, + (Y==[] -> true ; ( D2 is Depth -1, Y = [H|T], metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). + +metta_atom_iter(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). + +% is this OK? +metta_atom_iter(Eq,Depth,Self,Other,H):- metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_iter(Eq,D2,Self,Other,B). +%metta_atom_iter_l2(Depth,Self,Other,H):- metta_atom_iter(Eq,Depth,Self,Other,H). +%$metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. + +eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). + + +/* + +metta_atom_iter(Eq,_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B='True')). + +metta_atom_iter(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter(Eq,D2,Other,B). +metta_atom_iter(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(Eq,D2,Self,X),metta_atom_iter(Eq,D2,Self,[And|Y]). +*/ +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. +*/ +%metta_atom_iter_ref(Other,[Eq,H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). +metta_atom_iter_ref(Other,H,Ref):-clause(asserted_metta_atom(Other,H),true,Ref). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CASE/SWITCH +% ================================================================= +% ================================================================= +% ================================================================= +% Macro: case +:- nodebug(metta(case)). +/* +!(assertEqualToResult + (case + (Link $X B) + ( ( (g $Y) + (Link $X $Y)))) ()) +*/ +/* +eval_20(Eq,RetType,Depth,Self,['case',A,CL],Value):- !, +((eval(Depth,Self,A,AA), + if_trace((case),(writeqln('switch'(A)=AA))), + eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value))*->true; +Value=found_none). + +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + must_det_ll(into_case_list(1,CL,KVs)), + select_switch(Depth,Self,AA,KVs,Match,Value), + if_trace((case),(writeqln('matched'=Match))), + if_trace((case),(writeqln('result'=Value))), + check_returnval(Value,Eq,RetType). +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + select(['%void%',_],CL,Rest), Rest == [],!, Value =[]. +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + select(['%void%',Value],CL,Rest),!. + + +select_switch(Depth,_Self,_A,_Cases,_Match,_Value):- Depth<1,!,fail. +select_switch(Depth,Self,A,Cases,Match,Value):- + Depth2 is Depth -1, + ((if_trace((case),(writeqln('select-1'=A))),select_case(Depth2,Self,A,Cases,Match,Value))*->true; + ((eval_complete_change(Eq,_RetType,Depth2,Self,A,AA),if_trace((case),(writeqln('select-2'=AA))), + select_switch(Depth2,Self, AA,Cases,Match,Value))*->true; + (best_key('%void%',Cases,Match,Value)))). + + select_case(Depth,Self,AA,Cases,Match,Value):- + ((best_key(AA,Cases,Match,Value) *-> true ; + ((maybe_special_keys(Depth,Self,Cases,CasES), best_key(AA,CasES,Match,Value)) *-> true; + (fail)))). + + best_key(AA,Cases,Match,Value):- + ((member(Match-Value,Cases),AA ==Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases),AA=@=Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases), AA=Match))->true; + ((member(Match-Value,Cases),unify_enough(AA,Match))->true))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(N,[SV|CL],[S-V|CASES]):- + must_det_ll(is_case(S,SV,V)), + if_trace((case),(format('~N'), writeqln('case'(N)=(S>V)))), + N2 is N+1, + into_case_list(N2,CL,CASES). + into_case_list(_,[],[]). + + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + %maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- fail,eval(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + fail, maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + +*/ + +% if there is only a void then always return nothing for each Case +eval_20(Eq,_RetType,Depth,Self,['case',A,[[Void,_]]],Res):- + '%void%' == Void, + eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. + +% if there is nothing for case just treat like a collapse +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- + %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + once(eval(Eq,_RetType2,Depth,Self,A,_)), + return_empty([],Empty). + +% Macro: case +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- + must_det_ll(T==[]), + into_case_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case(Key,Case0,Value), + if_trace(metta(case),(format('~N'),writeqln(c(Nth,Key)=Value))))),KVs),!, + eval_case(Eq,RetType,Depth,Self,A,KVs,Res). + +eval_case(Eq,CaseRetType,Depth,Self,A,KVs,Res):- + ((eval(Eq,_UnkRetType,Depth,Self,A,AA), + if_trace((case),(writeqln('case'=A))), + if_trace(metta(case),writeqln('switch'=AA)), + (select_case(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval(Eq,CaseRetType,Depth,Self,Value,Res). + + select_case(Depth,Self,AA,Cases,Value):- + (best_key(AA,Cases,Value) -> true ; + (maybe_special_keys(Depth,Self,Cases,CasES), + (best_key(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key(AA,Cases,Value):- + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(CASES,CASES):- is_list(CASES),!. + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + +% ================================================================= +% ================================================================= +% ================================================================= +% COLLAPSE/SUPERPOSE +% ================================================================= +% ================================================================= +% ================================================================= + + + +%[collapse,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['collapse',List],Res):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res). + +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call_ndet(Body,DET), + nb_setarg(1,Do_more_defs,false), + (DET==true -> ! ; true). + + +eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +/* +eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. + + +eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +*/ + +%[superpose,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['superpose',List],Res):- !, + (((is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['superpose',UList],Res) + ; ((member(E,List),eval(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))), + \+ Res = 'Empty'. + +%[sequential,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['sequential',List],Res):- !, + (((fail,is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['sequential',UList],Res) + ; ((member(E,List),eval_ne(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))). + + +get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). +get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). +eval20_failed(Eq,RetType,Depth,Self, Term, Res):- + mnotrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval(Eq,RetType,Depth,Self, Term, Res). + + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- + mnotrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), + eval(Eq,RetType,Depth,Self, Term, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +eval_20(_Eq,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Eq,_RetType1,Depth,Self,['nop',Expr], Empty):- !, + ignore(eval('=',_RetType2,Depth,Self,Expr,_)), + return_empty([], Empty). + +eval_20(Eq,_RetType1,Depth,Self,['do',Expr], Empty):- !, + forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + %eval_ne(Eq,_RetType2,Depth,Self,Expr,_),!, + return_empty([],Empty). + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +eval_20(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + +% ================================================================= +% ================================================================= +% ================================================================= +% LET/LET* +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_until_unify(_Eq,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). + +eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). +%eval_until_eq(Eq,RetType,Depth,Self,X,Y):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +%eval_until_eq(Eq,RetType,Depth,Self,Y,X):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). +eval_until_eq(_Eq,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + ((var(EX);var(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + h((is_list(EX);is_list(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). + + eval_1change(Eq,RetType,Depth,Self,EX,EXX):- + eval_20(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- + eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_in_steps_some_change(_Eq,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). +eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), + eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, + append(L,[EXX|R],XX),eval_in_steps_or_same(Eq,RetType,Depth,Self,XX,Y). + +eval_in_steps_or_same(Eq,RetType,Depth,Self,X,Y):-eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y). +eval_in_steps_or_same(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). + + % (fail,return_empty([],Template))). + + +eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval(Eq,RetType,Depth,Self,A5,AE), AE=A)), + eval(Eq,RetType,Depth,Self,AA,OO). +%eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,eval(Eq,RetType,Depth,Self,A5,A),eval(Eq,RetType,Depth,Self,AA,AAO). +eval_20(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, eval(Eq,RetType,Depth,Self,Body,RetVal). +eval_20(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_20(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CONS/CAR/CDR +% ================================================================= +% ================================================================= +% ================================================================= + + + +into_pl_list(Var,Var):- var(Var),!. +into_pl_list(Nil,[]):- Nil == 'Nil',!. +into_pl_list([Cons,H,T],[HH|TT]):- Cons == 'Cons', !, into_pl_list(H,HH),into_pl_list(T,TT),!. +into_pl_list(X,X). + +into_metta_cons(Var,Var):- var(Var),!. +into_metta_cons([],'Nil'):-!. +into_metta_cons([Cons, A, B ],['Cons', AA, BB]):- 'Cons'==Cons, no_cons_reduce, !, + into_metta_cons(A,AA), into_metta_cons(B,BB). +into_metta_cons([H|T],['Cons',HH,TT]):- into_metta_cons(H,HH),into_metta_cons(T,TT),!. +into_metta_cons(X,X). + +into_listoid(AtomC,Atom):- AtomC = [Cons,H,T],Cons=='Cons',!, Atom=[H,[T]]. +into_listoid(AtomC,Atom):- is_list(AtomC),!,Atom=AtomC. +into_listoid(AtomC,Atom):- typed_list(AtomC,_,Atom),!. + +:- if( \+ current_predicate( typed_list / 3 )). +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +:- endif. + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + +%eval_20(Eq,RetType,Depth,Self,['flatten'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + +eval_20(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR_Y):- !, Atom=[CAR|_],!,do_expander(Eq,RetType,CAR,CAR_Y). +eval_20(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR_Y):- !, Atom=[_|CDR],!,do_expander(Eq,RetType,CDR,CDR_Y). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% STATE EDITING +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_20(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_20(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + +/* +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_nb_space,new_space,init_space). +space_type_method(is_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_nb_space,add_atom,add_nb_atom). +space_type_method(is_nb_space,remove_atom,'change-space!'). +space_type_method(is_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_nb_space,atom_count,atom_nb_count). +space_type_method(is_nb_space,get_atoms,'get-space'). +space_type_method(is_nb_space,atom_iter,atom_nb_iter). +*/ + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +% ================================================================= +% ================================================================= +% ================================================================= +% GET-TYPE +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['get-type',Val],TypeO):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, + do_expander(Eq,RetType,Type,TypeO). + + + +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% IMPORT/BIND +% ================================================================= +% ================================================================= +% ================================================================= +nb_bind(Name,Value):- nb_current(Name,Was),same_term(Value,Was),!. +nb_bind(Name,Value):- nb_setval(Name,Value),!. +eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- + (( into_space(Depth,Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal))), + check_returnval(Eq,RetType,RetVal). %RetVal=[]. +eval_20(Eq,RetType,_Depth,_Slf,['bind!',Other,['new-space']],RetVal):- atom(Other),!,assert(was_asserted_space(Other)), + return_empty([],RetVal), check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,eval(Eq,RetType,Depth,Self,Expr,Value), + nb_bind(Name,Value), return_empty(Value,RetVal))), + check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), + set_option_value(Name,Value))), return_empty(Value,RetVal), + check_returnval(Eq,RetType,RetVal))). +eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). + + +nd_ignore(Goal):- call(Goal)*->true;true. + + + + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AND/OR +% ================================================================= +% ================================================================= +% ================================================================= + +is_True(T):- T\=='False',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and(','). +is_and(S):- is_and(S,_). + +is_and(S,_):- \+ atom(S),!,fail. +is_and('and','True'). +is_and('and2','True'). +is_and('#COMMA','True'). is_and(',','True'). % is_and('And'). + +eval_20(Eq,RetType,_Dpth,_Slf,[And],True):- is_and(And,True),!,check_returnval(Eq,RetType,True). +eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, as_tf(( + eval_args(Eq,RetType,Depth,Self,X,True),eval_args(Eq,RetType,Depth,Self,Y,True)),TF). +eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, + eval_args(Eq,RetType,Depth,Self,X,True). +eval_20(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, + eval_args(Eq,RetType,Depth,Self,X,TF1), \+ \+ is_True(TF1), + eval_args(Eq,RetType,Depth,Self,[And|Y],TF). + +eval_20(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, + as_tf((eval_args(Eq,RetType,Depth,Self,X,'True');eval_args(Eq,RetType,Depth,Self,Y,'True')),TF). + + +% ================================================================= +% ================================================================= +% ================================================================= +% MeTTaLog Extras +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(_Eq,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). +eval_20(Eq,RetType,Depth,Self,['eval',S], Res):- !, eval(Eq,RetType,Depth,Self,S, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% DATA FUNCTOR +% ================================================================= +% ================================================================= +% ================================================================= +eval20_failked(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- + nonvar(V),is_metta_data_functor(V),is_list(VI),!, + maplist(eval(Eq,RetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% EVAL FAILED +% ================================================================= +% ================================================================= +% ================================================================= +eval_20(Eq,RetType,Depth,Self,X,Y):- + (eval_40(Eq,RetType,Depth,Self,X,M)*-> + M=Y ; + % finish_eval(Depth,Self,M,Y); + (eval_failed(Depth,Self,X,Y)*->true;X=Y)). + +eval_failed(Depth,Self,T,TT):- + finish_eval(Depth,Self,T,TT). + +finish_eval(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +finish_eval(_Dpth,_Slf,[],[]):-!. +%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%finish_eval(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +finish_eval(Depth,Self,[H|T],[HH|TT]):- !, + eval(Depth,Self,H,HH), + finish_eval(Depth,Self,T,TT). +finish_eval(Depth,Self,T,TT):- eval(Depth,Self,T,TT). + + %eval(Eq,RetType,Depth,Self,X,Y):- eval_20(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. + +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%eval_20(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +% Kills zero arity functions eval_20(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval(Eq,RetType,Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_40(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +eval_40(_Eq,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval(Eq,RetType,Depth,Self,[F|Temp],Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% PLUS/MINUS +% ================================================================= +% ================================================================= +% ================================================================= +eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). + +% ================================================================= +% ================================================================= +% ================================================================= +% METTLOG PREDEFS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_40(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), + (is_list(LL)->length(LL,Res);Res=1), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). + +eval_40(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). +eval_40(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). + +% user defined function +eval_40(Eq,RetType,Depth,Self,[H|PredDecl],Res):- + mnotrace(is_user_defined_head(Self,H)),!, + eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, + suggest_type(RetType,'Bool'), + eq_unify(Eq,_SharedType, X, Y, Res). + +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). + + +suggest_type(_RetType,_Bool). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- is_special_op(AE),!, + eval_70(Eq,RetType,Depth,Self,[AE|More],Res), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- + maplist(must_eval_args(Eq,_,Depth,Self),More,Adjusted), + eval_70(Eq,RetType,Depth,Self,[AE|Adjusted],Res), + check_returnval(Eq,RetType,Res). + +must_eval_args(Eq,RetType,Depth,Self,More,Adjusted):- + (eval_args(Eq,RetType,Depth,Self,More,Adjusted)*->true; + (with_debug(eval,eval_args(Eq,RetType,Depth,Self,More,Adjusted))*-> true; + ( + nl,writeq(eval_args(Eq,RetType,Depth,Self,More,Adjusted)),writeln('.'), + (More=Adjusted -> true ; + (trace, throw(must_eval_args(Eq,RetType,Depth,Self,More,Adjusted))))))). + + + + +eval_70(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call(Body),nb_setarg(1,Do_more_defs,false). + + +% ================================================================= +% ================================================================= +% ================================================================= +% inherited by system +% ================================================================= +% ================================================================= +% ================================================================= +is_system_pred(S):- atom(S),atom_concat(_,'!',S). + + + +eval_80(_Eq,_RetType,_Dpth,_Slf,LESS,Res):- + notrace((ground(LESS),once((eval_selfless(LESS,Res),mnotrace(LESS\==Res))))),!. + + +% predicate inherited by system +eval_80(Eq,RetType,_Depth,_Self,[AE|More],TF):- + is_system_pred(AE), + length(More,Len), + is_syspred(AE,Len,Pred), + %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted), + More = Adjusted, + catch_warn(efbug(show_call,eval_call(apply(Pred,Adjusted),TF))), + check_returnval(Eq,RetType,TF). + +:- if( \+ current_predicate( adjust_args / 2 )). + + :- discontiguous eval_80/6. + +is_user_defined_goal(Self,Head):- + is_user_defined_head(Self,Head). + +:- endif. + +eval_call(S,TF):- + s2p(S,P), !, + dmsg(eval_call(P,'$VAR'('TF'))),as_tf(P,TF). + +eval_80(Eq,RetType,_Depth,_Self,[AE|More],Res):- + is_system_pred(AE), + length([AE|More],Len), + is_syspred(AE,Len,Pred), + %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted),!, + More = Adjusted, + append(Adjusted,[Res],Args),!, + efbug(show_call,catch_warn(apply(Pred,Args))), + check_returnval(Eq,RetType,Res). + +:- if( \+ current_predicate( check_returnval / 3 )). +check_returnval(_,_RetType,_TF). +:- endif. + +:- if( \+ current_predicate( adjust_args / 5 )). +adjust_args(_Depth,_Self,_V,VI,VI). +:- endif. + +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- + eval_67(Eq,RetType,Depth,Self,PredDecl,Res). + + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- quietly(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch_err(G,error(_,_),fail)). + + +as_tf(G,TF):- G\=[_|_], catch_nowarn((call(G)*->TF='True';TF='False')). +%eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +%eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X='). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + +*/ +% ================================================================= +% ================================================================= +% ================================================================= +% USER DEFINED FUNCTIONS +% ================================================================= +% ================================================================= +% ================================================================= + +call_ndet(Goal,DET):- call(Goal),deterministic(DET). + +eval_60(Eq,RetType,Depth,Self,H,B):- + (eval_64(Eq,RetType,Depth,Self,H,B)*->true; + (fail,eval_67(Eq,RetType,Depth,Self,H,B))). + + +%eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Eq,Self,H,B). +eval_64(Eq,_RetType,_Dpth,Self,H,B):- + Eq='match', dcall(metta_atom(Self,H)),B=H. + + +eval_64(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + [Left|T1] \=@= [[H|Start]|T1], + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- % no weird template matchers + % forall(metta_defn(Eq,Self,[H|Template],_), + % maplist(not_template_arg,Template)), + Eq='=', + (metta_defn(Eq,Self,[H|Args],B0)*->true;(fail,[H|Args]=B0)), + light_eval(Depth,Self,B0,B). + %(eval(Eq,RetType,Depth,Self,B,Y);metta_atom_iter(Depth,Self,Y)). +% Use the first template match +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- fail, + Eq='=', + (metta_defn(Eq,Self,[H|Template],B0),Args=Template), + light_eval(Depth,Self,B0,B). + + +light_eval(_Depth,_Self,B,B). + +not_template_arg(TArg):- var(TArg), !, \+ attvar(TArg). +not_template_arg(TArg):- atomic(TArg),!. +%not_template_arg(TArg):- is_list(TArg),!,fail. + + +% Has argument that is headed by the same function +eval_67(Eq,RetType,Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_60(Eq,RetType,Depth,Self,[H1|NewArgs],Res). + +eval_67(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to eval +eval_67(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_60(Eq,RetType,Depth,Self,[F|Temp],Res). + +%eval_67(Eq,RetType,Depth,Self,X,Y):- (eval_68(Eq,RetType,Depth,Self,X,Y)*->true;metta_atom_iter(Depth,Self,[=,X,Y])). +/* +eval_67_fail(Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. +*/ + +%eval_68(Eq,RetType,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +%eval_68(Eq,RetType,_Dpth,Self,[H|T1],Y):- metta_defn(Eq,Self,[H|T1],Y). +%eval_68(Eq,RetType,_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +%eval_68(Eq,RetType,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Eq,Self,Left,Y). + + +%eval_6(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Eq,Self,['ift',R,Then],Become),eval(Eq,RetType,Depth,Self,CR,R),eval(Eq,RetType,Depth,Self,Then,_True),eval(Eq,RetType,Depth,Self,Become,RO). + + +%not_compound(Term):- \+ is_list(Term),!. +%eval_40(Eq,RetType,Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_645(Depth,Self,Term,Res). + + +% function inherited by system +/* +eval_80(Eq,RetType,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(eval(Eq,ArgTypes,Depth,Self),X,Y),!, + eval_85(Depth,Self,[F|Y],FY). + +eval_80(Eq,RetType,Depth,Self,FX,FY):- eval_85(Depth,Self,FX,FY). + +eval_85(Depth,Self,[AE|More],TF):- length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_86(Depth,Self,[AE|More],TF). +eval_86(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). +*/ +%eval_80(Eq,RetType,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval(Eq,RetType,Depth,Self,[F2|X2],Y2),eval(Eq,RetType,Depth,Self,X1,Y1). + + +% ================================================================= +% ================================================================= +% ================================================================= +% AGREGATES +% ================================================================= +% ================================================================= +% ================================================================= + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). + +%bagof_eval(Eq,RetType,Depth,Self,X,L):- bagof_eval(Eq,RetType,_RT,Depth,Self,X,L). + + +%bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. +bagof_eval(_Eq,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(Eq,RetType,Depth,Self,X,L):- + findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). + +setof_eval(Depth,Self,X,L):- setof_eval('=',_RT,Depth,Self,X,L). +setof_eval(Eq,RetType,Depth,Self,X,S):- bagof_eval(Eq,RetType,Depth,Self,X,L), + sort(L,S). + + +eval_ne(Eq,RetType,Depth,Self,X,E):- + eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E). + + + + +:- ensure_loaded(metta_subst). diff --git a/metta_vspace/pyswip-12-15/metta_interp.new b/metta_vspace/pyswip-12-15/metta_interp.new new file mode 100755 index 00000000..dd8ae458 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_interp.new @@ -0,0 +1,1920 @@ +:- encoding(iso_latin_1). +:- multifile(is_metta_data_functor/1). +:- dynamic(is_metta_data_functor/1). +:- multifile(is_nb_space/1). +:- dynamic(is_nb_space/1). +%:- '$set_source_module'('user'). +:- set_stream(user_input,tty(true)). +:- use_module(library(readline)). +:- use_module(library(editline)). +:- use_module(library(filesex)). +:- use_module(library(shell)). +%:- use_module(library(tabling)). +:- use_module(library(system)). +:- ensure_loaded(metta_compiler). +%:- ensure_loaded(metta_types). +:- ensure_loaded(metta_data). +:- ensure_loaded(metta_space). +:- ensure_loaded(metta_eval). +:- set_stream(user_input,tty(true)). +:- set_prolog_flag(encoding,iso_latin_1). +:- set_prolog_flag(encoding,utf8). +%:- set_prolog_flag(encoding,octet). +/* +Now PASSING NARS.TEC:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip\metta_interp.pl +C:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip1\metta_interp.pl +STS1.01) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.08) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.14) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.15) +Now PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.15) +Now PASSING TEST-SCRIPTS.E2-STATES.08) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.02) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.07) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.09) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.11) +PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.14) +PASSING TEST-SCRIPTS.E2-STATES.07) +----------------------------------------- +FAILING TEST-SCRIPTS.D5-AUTO-TYPES.01) +Now FAILING TEST-SCRIPTS.00-LANG-CASE.03) +Now FAILING TEST-SCRIPTS.B5-TYPES-PRELIM.19) +Now FAILING TEST-SCRIPTS.C1-GROUNDED-BASIC.20) + +*/ + + +option_value_def('repl',auto). +option_value_def('prolog',false). +option_value_def('compile',false). +option_value_def('table',false). +option_value_def(no_repeats,false). +option_value_def('time',true). +option_value_def('exec',true). +option_value_def('html',false). +option_value_def('python',false). +option_value_def('halt',false). +option_value_def('doing_repl',false). +option_value_def('test-retval',false). +option_value_def('trace-length',100). +option_value_def('stack-max',100). +option_value_def('trace-on-overtime',20.0). +option_value_def('trace-on-overflow',false). +option_value_def('trace-on-error',true). +option_value_def('trace-on-load',true). +option_value_def('trace-on-exec',true). +option_value_def('trace-on-eval',true). +option_value_def('trace-on-fail',false). +option_value_def('trace-on-pass',false). + + + + +set_is_unit_test(TF):- + set_option_value('trace-on-load',TF), + set_option_value('trace-on-exec',TF), + set_option_value('trace-on-eval',TF), + set_option_value('trace-on-pass',false), + set_option_value('trace-on-fail',false), + set_option_value('exec',rtrace), + set_option_value('eval',rtrace), + !. + +:- set_is_unit_test(true). +%:- set_is_unit_test. + +trace_on_fail:- option_value('trace-on-fail',true). +trace_on_overflow:- option_value('trace-on-overflow',true). +trace_on_pass:- option_value('trace-on-pass',true). +doing_repl:- option_value('doing_repl',true). +if_repl(Goal):- doing_repl->call(Goal);true. + +any_floats(S):- member(E,S),float(E),!. + +% ============================ +% %%%% Arithmetic Operations +% ============================ +%:- use_module(library(clpfd)). +:- use_module(library(clpq)). +%:- use_module(library(clpr)). + +% Addition +%'+'(Addend1, Addend2, Sum):- \+ any_floats([Addend1, Addend2, Sum]),!,Sum #= Addend1+Addend2 . +'+'(Addend1, Addend2, Sum):- notrace(catch_err(plus(Addend1, Addend2, Sum),_,fail)),!. +'+'(Addend1, Addend2, Sum):- {Sum = Addend1+Addend2}. +% Subtraction +'-'(Sum, Addend1, Addend2):- '+'(Addend1, Addend2, Sum). + +% Multiplication +'*'(Factor1, Factor2, Product):- {Product = Factor1*Factor2}. +% Division +'/'(Dividend, Divisor, Quotient):- {Dividend = Quotient * Divisor}. +% Modulus +'mod'(Dividend, Divisor, Remainder):- {Remainder = Dividend mod Divisor}. +% Exponentiation +'exp'(Base, Exponent, Result):- eval_H(['exp', Base, Exponent], Result). +% Square Root +'sqrt'(Number, Root):- eval_H(['sqrt', Number], Root). + +% ============================ +% %%%% List Operations +% ============================ +% Retrieve Head of the List +'car-atom'(List, Head):- eval_H(['car-atom', List], Head). +% Retrieve Tail of the List +'cdr-atom'(List, Tail):- eval_H(['cdr-atom', List], Tail). +% Construct a List +'Cons'(Element, List, 'Cons'(Element, List)):- !. +% Collapse List +'collapse'(List, CollapsedList):- eval_H(['collapse', List], CollapsedList). +% Count Elements in List +'CountElement'(List, Count):- eval_H(['CountElement', List], Count). +% Find Length of List +%'length'(List, Length):- eval_H(['length', List], Length). + +% ============================ +% %%%% Nondet Opteration +% ============================ +% Superpose a List +'superpose'(List, SuperposedList):- eval_H(['superpose', List], SuperposedList). + +% ============================ +% %%%% Testing +% ============================ + +% `assertEqual` Predicate +% This predicate is used for asserting that the Expected value is equal to the Actual value. +% Expected: The value that is expected. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: `assertEqual(5, 5, Result).` would succeed, setting Result to true (or some success indicator). +%'assertEqual'(Expected, Actual, Result):- use_metta_compiler,!,as_tf((Expected=Actual),Result). +'assertEqual'(Expected, Actual, Result):- ignore(Expected=Actual), eval_H(['assertEqual', Expected, Actual], Result). + +% `assertEqualToResult` Predicate +% This predicate asserts that the Expected value is equal to the Result of evaluating Actual. +% Expected: The value that is expected. +% Actual: The expression whose evaluation is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: If Actual evaluates to the Expected value, this would succeed, setting Result to true (or some success indicator). +'assertEqualToResult'(Expected, Actual, Result):- eval_H(['assertEqualToResult', Expected, Actual], Result). + +% `assertFalse` Predicate +% This predicate is used to assert that the evaluation of EvalThis is false. +% EvalThis: The expression that is being evaluated and checked for falsehood. +% Result: The result of the evaluation. +% Example: `assertFalse((1 > 2), Result).` would succeed, setting Result to true (or some success indicator), as 1 > 2 is false. +'assertFalse'(EvalThis, Result):- eval_H(['assertFalse', EvalThis], Result). + +% `assertNotEqual` Predicate +% This predicate asserts that the Expected value is not equal to the Actual value. +% Expected: The value that is expected not to match the Actual value. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the inequality. +% Example: `assertNotEqual(5, 6, Result).` would succeed, setting Result to true (or some success indicator). +'assertNotEqual'(Expected, Actual, Result):- eval_H(['assertNotEqual', Expected, Actual], Result). + +% `assertTrue` Predicate +% This predicate is used to assert that the evaluation of EvalThis is true. +% EvalThis: The expression that is being evaluated and checked for truth. +% Result: The result of the evaluation. +% Example: `assertTrue((2 > 1), Result).` would succeed, setting Result to true (or some success indicator), as 2 > 1 is true. +'assertTrue'(EvalThis, Result):- eval_H(['assertTrue', EvalThis], Result). + +% `rtrace` Predicate +% This predicate is likely used for debugging; possibly for tracing the evaluation of Condition. +% Condition: The condition/expression being traced. +% EvalResult: The result of the evaluation of Condition. +% Example: `rtrace((2 + 2), EvalResult).` would trace the evaluation of 2 + 2 and store its result in EvalResult. +'rtrace'(Condition, EvalResult):- eval_H(['rtrace', Condition], EvalResult). + +% `time` Predicate +% This predicate is used to measure the time taken to evaluate EvalThis. +% EvalThis: The expression whose evaluation time is being measured. +% EvalResult: The result of the evaluation of EvalThis. +% Example: `time((factorial(5)), EvalResult).` would measure the time taken to evaluate factorial(5) and store its result in EvalResult. +'time'(EvalThis, EvalResult):- eval_H(['time', EvalThis], EvalResult). + +% ============================ +% %%%% Debugging, Printing and Utility Operations +% ============================ +% REPL Evaluation +'repl!'(EvalResult):- eval_H(['repl!'], EvalResult). +% Condition Evaluation +'!'(Condition, EvalResult):- eval_H(['!', Condition], EvalResult). +% Import File into Environment +'import!'(Environment, Filename, Namespace):- eval_H(['import!', Environment, Filename], Namespace). +% Evaluate Expression with Pragma +'pragma!'(Environment, Expression, EvalValue):- eval_H(['pragma!', Environment, Expression], EvalValue). +% Print Message to Console +'print'(Message, EvalResult):- eval_H(['print', Message], EvalResult). +% No Operation, Returns EvalResult unchanged +'nop'(Expression, EvalResult):- eval_H(['nop', Expression], EvalResult). + +% ============================ +% %%%% Variable Bindings +% ============================ +% Bind Variables +'bind!'(Environment, Variable, Value):- eval_H(['bind!', Environment, Variable], Value). +% Let binding for single variable +'let'(Variable, Expression, Body, Result):- eval_H(['let', Variable, Expression, Body], Result). +% Sequential let binding +'let*'(Bindings, Body, Result):- eval_H(['let*', Bindings, Body], Result). + +% ============================ +% %%%% Reflection +% ============================ +% Get Type of Value +'get-type'(Value, Type):- eval_H(['get-type', Value], Type). + + +metta_cmd_args(Rest):- current_prolog_flag(late_metta_opts,Rest),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(os_argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,Rest). +run_cmd_args:- metta_cmd_args(Rest), !, do_cmdline_load_metta('&self',Rest). + + +metta_make_hook:- loonit_reset, option_value(not_a_reload,true),!. +metta_make_hook:- + metta_cmd_args(Rest), into_reload_options(Rest,Reload), cmdline_load_metta('&self',Reload). + +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(after, _Some):- nop( metta_make_hook). + +into_reload_options(Reload,Reload). + +is_cmd_option(Opt,M, TF):- atom(M), + atom_concat('-',Opt,Flag), + atom_contains(M,Flag),!, + get_flag_value(M,FV), + TF=FV. + +get_flag_value(M,V):- atomic_list_concat([_,V],'=',M),!. +get_flag_value(M,false):- atom_contains(M,'-no'),!. +get_flag_value(_,true). + + +:- ignore((( + \+ prolog_load_context(reloading,true), + forall(option_value_def(Opt,Default),set_option_value(Opt,Default))))). + +%process_option_value_def:- \+ option_value('python',false), skip(ensure_loaded(metta_python)). +process_option_value_def:- option_value('python',load), ensure_loaded(metta_vspace/pyswip/metta_python). +process_option_value_def. + + +%process_late_opts:- once(option_value('html',true)), once(shell('./total_loonits.sh')). +process_late_opts:- current_prolog_flag(os_argv,[_]),!,ignore(repl). +process_late_opts:- forall(process_option_value_def,true). +%process_late_opts:- halt(7). +process_late_opts. + +%do_cmdline_load_metta(_Slf,Rest):- select('--prolog',Rest,RRest),!, +% set_option_value('prolog',true), +% set_prolog_flag(late_metta_opts,RRest). +do_cmdline_load_metta(Self,Rest):- + set_prolog_flag(late_metta_opts,Rest), + forall(process_option_value_def,true), + cmdline_load_metta(Self,Rest),!, + forall(process_late_opts,true). + +load_metta_file(Self,Filemask):- atom_concat(_,'.metta',Filemask),!, load_metta(Self,Filemask). +load_metta_file(_Slf,Filemask):- load_flybase(Filemask). + +% done +cmdline_load_metta(_,Nil):- Nil==[],!. +cmdline_load_metta(Self,[Filemask|Rest]):- atom(Filemask), \+ atom_concat('-',_,Filemask), + must_det_ll((Src=load_metta_file(Self,Filemask),nl,write('; '),write_src(Src),nl,catch_red(Src),!,flush_output, + cmdline_load_metta(Self,Rest))). + +cmdline_load_metta(Self,['-g',M|Rest]):- + read_term_from_atom(M, Term, []), + ignore(call(Term)), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + m_opt(M,Opt),!, + is_cmd_option(Opt,M,TF),!, + format('~N'),write(' ; '), write_src(is_cmd_option(Opt,M,TF)), nl, !, set_option_value(Opt,TF), + set_tty_color_term(true), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + format('~N'),write('; unused '), write_src(M), nl, !, + cmdline_load_metta(Self,Rest). + + +set_tty_color_term(TF):- + current_output(X),set_stream(X,tty(TF)), + set_stream(current_output,tty(TF)), + set_prolog_flag(color_term ,TF). + +m_opt(M,Opt):- + m_opt0(M,Opt1), + m_opt1(Opt1,Opt). + +m_opt1(Opt1,Opt):- atomic_list_concat([Opt|_],'=',Opt1). + +m_opt0(M,Opt):- atom_concat('--no-',Opt,M),!. +m_opt0(M,Opt):- atom_concat('--',Opt,M),!. +m_opt0(M,Opt):- atom_concat('-',Opt,M),!. + +:- set_prolog_flag(occurs_check,true). + +start_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +start_html_of(_Filename):- + must_det_ll(( + S = _, + %retractall(metta_defn(Eq,S,_,_)), + nop(retractall(metta_type(S,_,_))), + %retractall(get_metta_atom(Eq,S,_,_,_)), + loonit_reset, + tee_file(TEE_FILE), + sformat(S,'cat /dev/null > "~w"',[TEE_FILE]), + + writeln(doing(S)), + ignore(shell(S)))). + +save_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +save_html_of(_):- \+ has_loonit_results, \+ option_value('html',true). +save_html_of(Filename):- + must_det_ll(( + file_name_extension(Base,_,Filename), + file_name_extension(Base,'metta.html',HtmlFilename), + loonit_reset, + tee_file(TEE_FILE), + writeln('
    Return to Summaries
    '), + sformat(S,'ansi2html -u < "~w" > "~w" ',[TEE_FILE,HtmlFilename]), + writeln(doing(S)), + ignore(shell(S)))). + +tee_file(TEE_FILE):- getenv('TEE_FILE',TEE_FILE),!. +tee_file(TEE_FILE):- metta_dir(Dir),directory_file_path(Dir,'TEE.ansi',TEE_FILE),!. +metta_dir(Dir):- getenv('METTA_DIR',Dir),!. + +load_metta(Filename):- + %clear_spaces, + load_metta('&self',Filename). + + +load_metta(_Self,Filename):- Filename=='--repl',!,repl. +load_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + with_wild_path(load_metta(Self),Filename),!,loonit_report. +load_metta(Self,RelFilename):- + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + track_load_into_file(Filename, + include_metta(Self,RelFilename)). + +include_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + must_det_ll(with_wild_path(include_metta(Self),Filename)),!. + +include_metta(Self,RelFilename):- + must_det_ll(( + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), + ((directory_file_path(Directory, _, Filename), + assert(metta_file(Self,Filename,Directory)), + with_cwd(Directory, + must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). + +load_metta_file_stream(Filename,Self,In):- + with_option(loading_file,Filename, + %current_exec_file(Filename), + ((must_det_ll(( + set_exec_num(Filename,1), + load_answer_file(Filename), + set_exec_num(Filename,0))), + once((repeat, (( + ((nb_current(read_mode,Mode),Mode\==[])->true;Mode=load), + once(read_metta(In,Expr)), %write_src(read_metta=Expr),nl, + must_det_ll((do_metta(file(Filename),Mode,Self,Expr,_O)->true; + pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), + flush_output)), + at_end_of_stream(In)))))),!. + + +clear_spaces:- clear_space(_). +clear_space(S):- + %retractall(metta_defn(_,S,_,_)), + nop(retractall(metta_type(S,_,_))), + retractall(asserted_metta_atom(S,_)). + + +lsm:- lsm(_). +lsm(S):- + listing(metta_file(S,_,_)), + %listing(mdyn_type(S,_,_,_)), + forall(mdyn_type(S,_,_,Src),color_g_mesg('#22a5ff',write_f_src(Src))), + nl,nl,nl, + forall(mdyn_defn(S,_,_,Src),color_g_mesg('#00ffa5',write_f_src(Src))), + %listing(mdyn_defn(S,_,_,_)), + !. + +write_f_src(H,B):- H=@=B,!,write_f_src(H). +write_f_src(H,B):- write_f_src(['=',H,B]). + +hb_f(HB,ST):- sub_term(ST,HB),(atom(ST),ST\==(=),ST\==(:)),!. +write_f_src(HB):- + hb_f(HB,ST), + option_else(current_def,CST,[]),!, + (CST == ST -> true ; (nl,nl,nl,set_option_value(current_def,ST))), + write_src(HB). + + + +debug_only(G):- notrace(ignore(catch_warn(G))). +debug_only(_What,G):- ignore((fail,notrace(catch_warn(G)))). + + +'True':- true. +'False':- fail. + + +'metta_learner::vspace-main':- repl. + +into_underscores(D,U):- atom(D),!,atomic_list_concat(L,'-',D),atomic_list_concat(L,'_',U). +into_underscores(D,U):- descend_and_transform(into_underscores,D,U),!. + +into_hyphens(D,U):- atom(D),!,atomic_list_concat(L,'_',D),atomic_list_concat(L,'-',U). +into_hyphens(D,U):- descend_and_transform(into_hyphens,D,U),!. + +descend_and_transform(P2, Input, Transformed) :- + ( var(Input) + -> Transformed = Input % Keep variables as they are + ; compound(Input) + -> (compound_name_arguments(Input, Functor, Args), + maplist(descend_and_transform(P2), Args, TransformedArgs), + compound_name_arguments(Transformed, Functor, TransformedArgs)) + ; (atom(Input),call(P2,Input,Transformed)) + -> true % Transform atoms using xform_atom/2 + ; Transformed = Input % Keep other non-compound terms as they are + ). + +/* +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. + +fn_append(List,X,Call):- + fn_append1(List,X,ListX), + into_fp(ListX,Call). + + + + + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + +is_metta_data_functor(Eq,Other,H):- + metta_type(Other,H,_), + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_). +*/ +is_function(F):- atom(F). + +is_False(X):- X\=='True', (is_False1(X)-> true ; (eval_H(X,Y),is_False1(Y))). +is_False1(Y):- (Y==0;Y==[];Y=='False'). + +is_conz(Self):- compound(Self), Self=[_|_]. + +%dont_x(eval_H(Depth,Self,metta_if(A=1,atom_concat(metta_,_,F). +needs_expanded(eval_H(Term,_),Expand):- !,sub_term(Expand,Term),compound(Expand),Expand\=@=Term, + compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). +needs_expanded([A|B],Expand):- sub_term(Expand,[A|B]), compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). + +fn_append1(eval_H(Term,X),X,eval_H(Term,X)):-!. +fn_append1(Term,X,eval_H(Term,X)). + + +% Check if parentheses are balanced in a list of characters +balanced_parentheses(Chars) :- balanced_parentheses(Chars, 0). +balanced_parentheses([], 0). +balanced_parentheses(['('|T], N) :- N1 is N + 1, balanced_parentheses(T, N1). +balanced_parentheses([')'|T], N) :- N > 0, N1 is N - 1, balanced_parentheses(T, N1). +balanced_parentheses([H|T], N) :- H \= '(', H \= ')', balanced_parentheses(T, N). +% Recursive function to read lines until parentheses are balanced. +repl_read(NewAccumulated, Expr):- + atom_concat(Atom, '.', NewAccumulated), + catch_err((read_term_from_atom(Atom, Term, []), Expr=call(Term)), E, + (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. + + +repl_read("!", '!'):-!. +repl_read("+", '+'):-!. +repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. + +repl_read(Str, Expr):- atom_concat('@',_,Str),!,atom_string(Expr,Str). +repl_read(NewAccumulated, Expr):- + normalize_space(string(Renew),NewAccumulated), Renew \== NewAccumulated, !, + repl_read(Renew, Expr). +%repl_read(NewAccumulated,exec(Expr)):- string_concat("!",Renew,NewAccumulated), !, repl_read(Renew, Expr). +repl_read(NewAccumulated, Expr):- string_chars(NewAccumulated, Chars), + balanced_parentheses(Chars), length(Chars, Len), Len > 0, + parse_sexpr_metta(NewAccumulated, Expr), !, + normalize_space(string(Renew),NewAccumulated), + add_history_string(Renew). +repl_read(Accumulated, Expr) :- read_line_to_string(current_input, Line), repl_read(Accumulated, Line, Expr). +repl_read(Accumulated, "", Expr):- !, repl_read(Accumulated, Expr). +repl_read(_Accumulated, Line, Expr):- Line == end_of_file, !, Expr = Line. +repl_read(Accumulated, Line, Expr) :- atomics_to_string([Accumulated," ",Line], NewAccumulated), !, + repl_read(NewAccumulated, Expr). + +repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +repl_read(Expr) :- repeat, + remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), + repl_read(Str, Expr1), + once(((atom(Expr1),atom_concat('@',_,Expr1), + \+ atom_contains(Expr1,"="), + repl_read(Expr2)) + -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), + % this cutrs the repeat/0 + ((peek_pending_codes(_,Peek),Peek==[])->!;true). + +add_history_string(Str):- notrace(ignore(add_history01(Str))),!. + +add_history_src(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). + + +add_history_pl(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). + +read_metta1(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta1(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta1(In,Expr):- string(In),!,parse_sexpr_metta(In,Expr),!. +read_metta1(In,Expr):- peek_char(In,Char), read_metta1(In,Char,Expr). + +read_metta1(In,Char,Expr):- char_type(Char,white),get_char(In,Char),put(Char),!,read_metta1(In,Expr). +read_metta1(In,'!',Expr):- get_char(In,_), !, read_metta(In,Read1),!,Expr=exec(Read1). +read_metta1(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),write_comment(Str),!,read_metta(In,Expr))),!. +read_metta1(In,_,Expr):- maybe_read_pl(In,Expr),!. +read_metta1(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). + + +maybe_read_pl(In,Expr):- + peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), + notrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, + read_term(In, Term, [])))). +peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. +peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. + + + + +%read_line_to_sexpr(Stream,UnTyped), +read_sform(Str,F):- trace, string(Str),open_string(Str,S),!,read_sform(S,F). +read_sform(S,F):- + read_sform1(S,F1), + ( F1\=='!' -> F=F1 ; + (read_sform1(S,F2), F = exec(F2))). + +read_sform1(Str,F):- string(Str),open_string(Str,S),!,read_sform1(S,F). +read_sform1(S,F):- at_end_of_stream(S),!,F=end_of_file. +read_sform1(S,M):- peek_char(S,C),read_sform3(C,S,F), untyped_to_metta(F,M). +%read_sform1(S,F):- profile(parse_sexpr_metta(S,F)). + +read_sform3(C,S,F):- char_type(C,white),get_char(S,_),!,read_sform1(S,F). +read_sform3(';',S,'$COMMENT'(F,0,0)):- !, read_line_to_string(S,F). +read_sform3(';',S,F):- read_line_to_string(S,_),!,read_sform1(S,F). +read_sform3('!',S,exec(F)):- !,get_char(S,_),read_sform1(S,F). +read_sform3(_,S,F):- read_line_to_string(S,L),!,read_sform_cont(L,S,F). + +read_sform_cont(L,S,F):- L=="", !, read_sform1(S,F). +read_sform_cont(L,_S,F):- input_to_forms(L,F),!. +read_sform_cont(L,S,F):- read_line_to_string(S,L2), + atomic_to_string([L,' ',L2],L3),read_sform_cont(L3,S,F),!. + +in2_stream(N1,S1):- integer(N1),!,stream_property(S1,file_no(N1)),!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,alias(N1)),!. +in2_stream(N1,S1):- is_stream(N1),S1=N1,!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. +is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. + +%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). +read_metta(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta(In,Expr):- + read_metta1(In,Read1), + (Read1=='!' + -> (read_metta1(In,Read2), Expr=exec(Read2), nop(add_history_src(Expr))) + ; Expr = Read1),!. + +parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. +parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + +parse_sexpr_metta1(M,exec(O)):- string_concat('!',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(M,(O)):- string_concat('+',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + + +write_comment(_):- silent_loading,!. +write_comment(Cmt):- connlf,format(';;~w~n',[Cmt]). +do_metta_cmt(_,'$COMMENT'(Cmt,_,_)):- write_comment(Cmt),!. +do_metta_cmt(_,'$STRING'(Cmt)):- write_comment(Cmt),!. +do_metta_cmt(Self,[Cmt]):- !, do_metta_cmt(Self, Cmt),!. + + +mlog_sym('@'). + +%untyped_to_metta(I,exec(O)):- compound(I),I=exec(M),!,untyped_to_metta(M,O). +untyped_to_metta(I,O):- + must_det_ll(( + trly(mfix_vars1,I,M), + trly(cons_to_c,M,OM), + trly(cons_to_l,OM,O))). + + +trly(P2,A,B):- once(call(P2,A,M)),A\=@=M,!,trly(P2,M,B). +trly(_,A,A). + +mfix_vars1(I,O):- var(I),!,I=O. +mfix_vars1('$t','$VAR'('T')):-!. +mfix_vars1('$T','$VAR'('T')):-!. +%mfix_vars1(I,O):- I=='T',!,O='True'. +%mfix_vars1(I,O):- I=='F',!,O='False'. +%mfix_vars1(I,O):- is_i_nil(I),!,O=[]. +mfix_vars1(I,O):- I=='true',!,O='True'. +mfix_vars1(I,O):- I=='false',!,O='False'. +mfix_vars1('$STRING'(I),O):- option_value(strings,true),!, mfix_vars1(I,O). +mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),atom_chars(O,M),!. +%mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),name(O,M),!. +mfix_vars1([H|T],O):- H=='[', is_list(T), last(T,L),L==']',append(List,[L],T), !, O = ['[...]',List]. +mfix_vars1([H|T],O):- H=='{', is_list(T), last(T,L),L=='}',append(List,[L],T), !, O = ['{...}',List]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),O):- is_list(List),!, O = ['[...]',List]. +mfix_vars1(I,O):- I = ['[', X, ']'], nonvar(X), !, O = ['[...]',X]. +mfix_vars1(I,O):- I = ['{', X, '}'], nonvar(X), !, O = ['{...}',X]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),Res):- is_list(List),!, append(['['|List],[']'],Res),!. +mfix_vars1(I,O):- I==[Quote, S], Quote==quote,S==s,!, O=is. +mfix_vars1([K,H|T],Cmpd):- atom(K),mlog_sym(K),is_list(T),mfix_vars1([H|T],[HH|TT]),atom(HH),is_list(TT),!, + compound_name_arguments(Cmpd,HH,TT). +%mfix_vars1([H|T],[HH|TT]):- !, mfix_vars1(H,HH),mfix_vars1(T,TT). +mfix_vars1(List,ListO):- is_list(List),!,maplist(mfix_vars1,List,ListO). +mfix_vars1(I,O):- string(I),option_value('string-are-atoms',true),!,atom_string(O,I). + +mfix_vars1(I,O):- compound(I),!,compound_name_arguments(I,F,II),F\=='$VAR',maplist(mfix_vars1,II,OO),!,compound_name_arguments(O,F,OO). +mfix_vars1(I,O):- \+ atom(I),!,I=O. +mfix_vars1(I,'$VAR'(O)):- atom_concat('$',N,I),dvar_name(N,O),!. +mfix_vars1(I,I). + +no_cons_reduce. + +dvar_name(t,'T'):- !. +dvar_name(N,O):- atom(N),atom_number(N,Num),atom_concat('Num',Num,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- number(N),atom_concat('Num',N,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- \+ atom(N),!,format(atom(A),'~w',[N]),dvar_name(A,O). +dvar_name('','__'):-!. % "$" +dvar_name('_','_'):-!. % "$_" +dvar_name(N,O):- svar_fixvarname(N,O),!. +dvar_name(N,O):- must_det_ll((atom_chars(N,Lst),maplist(c2vn,Lst,NList),atomic_list_concat(NList,S),svar_fixvarname(S,O))),!. +c2vn(A,A):- char_type(A,prolog_identifier_continue),!. +c2vn(A,A):- char_type(A,prolog_var_start),!. +c2vn(A,AA):- char_code(A,C),atomic_list_concat(['_C',C,'_'],AA). + +cons_to_l(I,I):- no_cons_reduce,!. +cons_to_l(I,O):- var(I),!,O=I. +cons_to_l(I,O):- is_i_nil(I),!,O=[]. +cons_to_l(I,O):- I=='nil',!,O=[]. +cons_to_l(C,O):- \+ compound(C),!,O=C. +cons_to_l([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_l(H,HH),!,cons_to_l(T,TT). +cons_to_l(List,ListO):- is_list(List),!,maplist(cons_to_l,List,ListO). +cons_to_l(I,I). + +cons_to_c(I,I):- no_cons_reduce,!. +cons_to_c(I,O):- var(I),!,O=I. +cons_to_c(I,O):- is_i_nil(I),!,O=[]. +cons_to_c(I,O):- I=='nil',!,O=[]. +cons_to_c(C,O):- \+ compound(C),!,O=C. +cons_to_c([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_c(H,HH),!,cons_to_c(T,TT). +cons_to_c(I,O):- \+ is_list(I), compound_name_arguments(I,F,II),maplist(cons_to_c,II,OO),!,compound_name_arguments(O,F,OO). +cons_to_c(I,I). + + + +t_is_ttable(T):- var(T),!. +t_is_ttable(T):- is_i_nil(T),!. +t_is_ttable(T):- is_ftVar(T),!. +t_is_ttable([F|Args]):- F=='Cons',!,is_list(Args). +t_is_ttable([_|Args]):- !, \+ is_list(Args). +t_is_ttable(_). + +is_cons_f(Cons):- is_cf_nil(Cons,_). +is_cf_nil('Cons','NNNil'). +%is_cf_nil('::','nil'). + +is_i_nil(I):- + is_cf_nil('Cons',Nil), I == Nil. + +subst_vars(TermWDV, NewTerm):- + subst_vars(TermWDV, NewTerm, NamedVarsList), + maybe_set_var_names(NamedVarsList). + +subst_vars(TermWDV, NewTerm, NamedVarsList) :- + subst_vars(TermWDV, NewTerm, [], NamedVarsList). + +subst_vars(Term, Term, NamedVarsList, NamedVarsList) :- var(Term), !. +subst_vars([], [], NamedVarsList, NamedVarsList):- !. +subst_vars([TermWDV|RestWDV], [Term|Rest], Acc, NamedVarsList) :- !, + subst_vars(TermWDV, Term, Acc, IntermediateNamedVarsList), + subst_vars(RestWDV, Rest, IntermediateNamedVarsList, NamedVarsList). +subst_vars('$VAR'('_'), _, NamedVarsList, NamedVarsList) :- !. +subst_vars('$VAR'(VName), Var, Acc, NamedVarsList) :- nonvar(VName), svar_fixvarname(VName,Name), !, + (memberchk(Name=Var, Acc) -> NamedVarsList = Acc ; ( !, Var = _, NamedVarsList = [Name=Var|Acc])). +subst_vars(Term, Var, Acc, NamedVarsList) :- atom(Term),atom_concat('$',DName,Term), + dvar_name(DName,Name),!,subst_vars('$VAR'(Name), Var, Acc, NamedVarsList). + +subst_vars(TermWDV, NewTerm, Acc, NamedVarsList) :- + compound(TermWDV), !, + compound_name_arguments(TermWDV, Functor, ArgsWDV), + subst_vars(ArgsWDV, Args, Acc, NamedVarsList), + compound_name_arguments(NewTerm, Functor, Args). +subst_vars(Term, Term, NamedVarsList, NamedVarsList). + + + +:- nb_setval(variable_names,[]). + + +assert_preds(_Self,_Load,_Preds):- \+ preview_compiler,!. +assert_preds(_Self,Load,Preds):- + expand_to_hb(Preds,H,_B),functor(H,F,A), + color_g_mesg('#005288',( + ignore(( + \+ predicate_property(H,defined), + if_t(use_metta_compiler,catch_i(dynamic(F,A))), + format(' :- ~q.~n',[dynamic(F/A)]), + if_t(option_value('tabling',true), format(' :- ~q.~n',[table(F/A)])))), + if_t((preview_compiler), + format('~N~n ~@',[portray_clause(Preds)])), + if_t(use_metta_compiler,if_t(\+ predicate_property(H,static),add_assertion(Preds))))), + nop(metta_anew1(Load,Preds)). + + +%load_hook(_Load,_Hooked):- !. +load_hook(Load,Hooked):- ignore(( \+ ((forall(load_hook0(Load,Hooked),true))))),!. + +load_hook0(_,_):- \+ current_prolog_flag(metta_interp,ready),!. +load_hook0(_,_):- \+ preview_compiler,!. +load_hook0(Load,metta_defn(=,Self,H,B)):- + functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +/* +load_hook0(Load,get_metta_atom(Eq,Self,H)):- B = 'True', + H\=[':'|_], functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +*/ + +use_metta_compiler:- notrace(option_value('compile','full')), !. +preview_compiler:- \+ option_value('compile',false), !. +%preview_compiler:- use_metta_compiler,!. + + + +op_decl(match, [ 'Space', 'Atom', 'Atom'], '%Undefined%'). +op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('get-atoms', [ 'Space' ], 'Atom'). + +op_decl('car-atom', [ 'Expression' ], 'Atom'). +op_decl('cdr-atom', [ 'Expression' ], 'Expression'). + +op_decl(let, [ 'Atom', '%Undefined%', 'Atom' ], 'Atom'). +op_decl('let*', [ 'Expression', 'Atom' ], 'Atom'). + +op_decl(and, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(or, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(case, [ 'Expression', 'Atom' ], 'Atom'). +/* +op_decl(apply, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl(chain, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl('filter-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl('foldl-atom', [ 'Expression', 'Atom', 'Variable', 'Variable', 'Atom' ], 'Atom'). +op_decl('map-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl(quote, [ 'Atom' ], 'Atom'). +op_decl('if-decons', [ 'Atom', 'Variable', 'Variable', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-empty', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-error', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-non-empty-expression', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-not-reducible', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl(return, [ 'Atom' ], 'ReturnType'). +op_decl('return-on-error', [ 'Atom', 'Atom'], 'Atom'). +op_decl(unquote, [ '%Undefined%'], '%Undefined%'). +op_decl(cons, [ 'Atom', 'Atom' ], 'Atom'). +op_decl(decons, [ 'Atom' ], 'Atom'). +op_decl(empty, [], '%Undefined%'). +op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). +op_decl(eval, [ 'Atom' ], 'Atom'). +op_decl(function, [ 'Atom' ], 'Atom'). +op_decl(id, [ 'Atom' ], 'Atom'). +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). +*/ +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). +op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). +op_decl('%', [ 'Number', 'Number' ], 'Number'). +op_decl('*', [ 'Number', 'Number' ], 'Number'). +op_decl('-', [ 'Number', 'Number' ], 'Number'). +op_decl('+', [ 'Number', 'Number' ], 'Number'). +op_decl(combine, [ X, X], X). + +op_decl('bind!', ['Symbol','%Undefined%'], 'EmptyType'). +op_decl('import!', ['Space','Atom'], 'EmptyType'). +op_decl('get-type', ['Atom'], 'Atom'). + +type_decl('Any'). +type_decl('Atom'). +type_decl('Bool'). +type_decl('ErrorType'). +type_decl('Expression'). +type_decl('Number'). +type_decl('ReturnType'). +type_decl('Space'). +type_decl('Symbol'). +type_decl('MemoizedState'). +type_decl('Type'). +type_decl('%Undefined%'). +type_decl('Variable'). + +:- dynamic(get_metta_atom/2). +:- dynamic(asserted_metta_atom/2). +metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). +metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). + +%get_metta_atom(Eq,KB, [F|List]):- KB='&flybase',fb_pred(F, Len), length(List,Len),apply(F,List). + + +get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). + +get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred(F, Len), length([A|List],Len),apply(F,[A|List]). +get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). +get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). +get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). +get_metta_atom_from(KB,Atom):- if_or_else(asserted_metta_atom( KB,Atom),asserted_metta_atom_fallback( KB,Atom)). + +asserted_metta_atom_fallback( KB,Atom):- fail, is_list(KB),!, member(Atom,KB). +%asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) + +%metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. +metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). +metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). +%typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). + + +%maybe_xform(metta_atom(KB,[F,A|List]),metta_atom(KB,F,A,List)):- is_list(List),!. +maybe_xform(metta_defn(Eq,KB,Head,Body),metta_atom(KB,[Eq,Head,Body])). +maybe_xform(metta_type(KB,Head,Body),metta_atom(KB,[':',Head,Body])). +maybe_xform(metta_atom(KB,HeadBody),asserted_metta_atom(KB,HeadBody)). +maybe_xform(_OBO,_XForm):- !, fail. + +metta_anew1(Load,_OBO):- var(Load),trace,!. +metta_anew1(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew1(Load,XForm). + +metta_anew1(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew1(Mode,OBO). +metta_anew1(load,OBO):- OBO= metta_atom(Space,Atom),!,'add-atom'(Space, Atom). +metta_anew1(unload,OBO):- OBO= metta_atom(Space,Atom),!,'remove-atom'(Space, Atom). + +metta_anew1(load,OBO):- !, must_det_ll((load_hook(load,OBO), + subst_vars(OBO,Cl),show_failure(assertz_if_new(Cl)))). %to_metta(Cl). +metta_anew1(unload,OBO):- subst_vars(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + +metta_anew2(Load,_OBO):- var(Load),trace,!. +metta_anew2(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew2(Load,XForm). +metta_anew2(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew2(Mode,OBO). +metta_anew2(load,OBO):- must_det_ll((load_hook(load,OBO),subst_vars_not_last(OBO,Cl),assertz_if_new(Cl))). %to_metta(Cl). +metta_anew2(unload,OBO):- subst_vars_not_last(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + + +metta_anew(Ch,Src,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew(Mode,Src,OBO). +metta_anew(Load,_Src,OBO):- silent_loading,!,metta_anew1(Load,OBO). +metta_anew(Load,Src,OBO):- maybe_xform(OBO,XForm),!,metta_anew(Load,Src,XForm). +metta_anew(Load,Src,OBO):- format('~N'), color_g_mesg('#0f0f0f',(write(' ; Action: '),writeq(Load=OBO))), + color_g_mesg('#ffa500', write_src(Src)), + metta_anew1(Load,OBO),format('~n'). + +subst_vars_not_last(A,B):- + functor(A,_F,N),arg(N,A,E), + subst_vars(A,B), + nb_setarg(N,B,E),!. + +con_write(W):-check_silent_loading, write(W). +con_writeq(W):-check_silent_loading, writeq(W). +writeqln(Q):- check_silent_loading,write(' '),con_writeq(Q),connl. + +connlf:- check_silent_loading, format('~N'). +connl:- check_silent_loading,nl. +% check_silent_loading:- silent_loading,!,trace,break. +check_silent_loading. +silent_loading:- is_converting,!. +silent_loading:- \+ option_value('trace-on-load',true), !. + + + +uncompound(OBO,Src):- \+ compound(OBO),!, Src = OBO. +uncompound('$VAR'(OBO),'$VAR'(OBO)):-!. +uncompound(IsList,Src):- is_list(IsList),!,maplist(uncompound,IsList,Src). +uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). +uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). + +:- dynamic(all_data_to/1). +all_data_once:- all_data_to(_),!. +all_data_once:- open(all_data,write,Out,[alias(all_data),encoding(utf8),lock(write)]), + assert(all_data_to(Out)), + writeln(Out,':- encoding(utf8).'), + writeln(Out,':- style_check(-discontiguous).'), + all_data_preds. + +all_data_preds:- + all_data_to(Out), + with_output_to(Out, +((listing(table_n_type/3), + listing(load_state/2), + listing(is_loaded_from_file_count/2), + listing(fb_pred/2), + listing(fb_arg_type/1), + listing(fb_arg_table_n/3), + listing(fb_arg/1), + listing(done_reading/1)))),!. + +all_data_done:- + all_data_preds, + retract(all_data_to(Out)), + close(Out). + + + +%real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). +real_assert(OBO):- call(OBO),!. +real_assert(OBO):- assert(OBO), + (is_converting->print_src(OBO);true). + +print_src(OBO):- format('~N'), uncompound(OBO,Src),!, write_src(Src). + +assert_to_metta(_):- reached_file_max,!. +assert_to_metta(OBO):- !, functor(OBO,Fn,A),decl_fb_pred(Fn,A), !,real_assert(OBO),!, + incr_file_count(_),heartbeat. + +assert_to_metta(OBO):- + ignore(( A>=2,A<700, + OBO=..[Fn|Cols], + must_det_ll(( + make_assertion4(Fn,Cols,Data,OldData), + functor(Data,FF,AA), + decl_fb_pred(FF,AA), + ((fail,call(Data))->true;( + must_det_ll(( + real_assert(Data), + incr_file_count(_), + ignore((((should_show_data(X), + ignore((fail,OldData\==Data,write('; oldData '),write_src(OldData),format(' ; ~w ~n',[X]))), + write_src(Data),format(' ; ~w ~n',[X]))))), + ignore(( + fail, option_value(output_stream,OutputStream), + is_stream(OutputStream), + should_show_data(X1),X1<1000,must_det_ll((display(OutputStream,Data),writeln(OutputStream,'.'))))))))))))),!. + +assert_MeTTa(OBO):- !, assert_to_metta(OBO). +%assert_MeTTa(OBO):- !, assert_to_metta(OBO),!,heartbeat. +/* +assert_MeTTa(Data):- !, heartbeat, functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + incr_file_count(_), + ignore((((should_show_data(X), + write(newData(X)),write(=),write_src(Data))))), + assert(Data),!. +*/ + + +%:- dynamic((metta_type/3,metta_defn/3,get_metta_atom/2)). + +into_space(Self,'&self',Self):-!. +into_space(_,Other,Other):-!. + + +into_space(Self,Myself,SelfO):- into_space(30,Self,Myself,SelfO). + +into_space(_Dpth,Self,Myself,Self):-Myself=='&self',!. +into_space(_Dpth,Self,None,Self):- 'None' == None,!. +into_space(Depth,Self,Other,Result):- eval_H(Depth,Self,Other,Result). +into_name(_,Other,Other). + +%eval_f_args(Depth,Self,F,ARGS,[F|EARGS]):- maplist(eval_H(Depth,Self),ARGS,EARGS). + + +combine_result(TF,R2,R2):- TF == [], !. +combine_result(TF,_,TF):-!. + + +do_metta1_e(_Self,_,exec(Exec)):- !,write_exec(Exec),!. +do_metta1_e(_Self,_,[=,A,B]):- !, with_concepts(false, + (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. +do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. + +write_exec(Exec):- notrace(write_exec0(Exec)). +%write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). +write_exec0(Exec):- + wots(S,write_src(exec(Exec))), + nb_setval(exec_src,Exec), + ignore((notrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). + + + + +asserted_do_metta(Space,Load,Src):- asserted_do_metta2(Space,Load,Src,Src). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,Type], Src):- TypeOp = ':', \+ is_list(Type),!, + must_det_ll(( + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,Type]))))),!. + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len),LenM1 is Len - 1, last_element(TypeDecL,LE), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecL]))), + metta_anew1(Load,metta_arity(Self,Fn,LenM1)), + arg_types(TypeDecL,[],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)),!, + metta_anew1(Load,metta_last(Self,Fn,LE)))). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL,RetType], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len), + append(TypeDecL,[RetType],TypeDecLRet), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecLRet]))), + metta_anew1(Load,metta_arity(Self,Fn,Len)), + arg_types(TypeDecL,[RetType],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)), + metta_anew1(Load,metta_return(Self,Fn,RetType)))),!. + +/*do_metta(File,Self,Load,PredDecl, Src):-fail, + metta_anew(Load,Src,metta_atom(Self,PredDecl)), + ignore((PredDecl=['=',Head,Body], metta_anew(Load,Src,metta_defn(Eq,Self,Head,Body)))), + ignore((Body == 'True',!,do_metta(File,Self,Load,Head))), + nop((fn_append(Head,X,Head), fn_append(PredDecl,X,Body), + metta_anew((Head:- Body)))),!.*/ + +asserted_do_metta2(Self,Load,[EQ,Head,Result], Src):- EQ=='=', !, + must_det_ll(( + discover_head(Self,Load,Head), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_defn(EQ,Self,Head,Result))), + discover_body(Self,Load,Result))). + +asserted_do_metta2(Self,Load,PredDecl, Src):- + ignore(discover_head(Self,Load,PredDecl)), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,PredDecl))). + + +always_exec(exec(W)):- !, is_list(W), always_exec(W). +always_exec(Comp):- compound(Comp),compound_name_arity(Comp,Name,N),atom_concat('eval',_,Name),Nm1 is N-1, arg(Nm1,Comp,TA),!,always_exec(TA). +always_exec(List):- \+ is_list(List),!,fail. +always_exec([Var|_]):- \+ atom(Var),!,fail. +always_exec(['extend-py!'|_]):- !, fail. +always_exec([H|_]):- atom_concat(_,'!',H),!. %pragma!/print!/transfer!/include! etc +always_exec(['assertEqualToResult'|_]):-!,fail. +always_exec(['assertEqual'|_]):-!,fail. +always_exec(_):-!,fail. % everything else + +if_t(A,B,C):- trace,if_t((A,B),C). + + +check_answers_for(TermV,Ans):- (string(TermV);var(Ans);var(TermV)),!,fail. +check_answers_for(TermV,_):- sformat(S,'~q',[TermV]),atom_contains(S,"[assert"),!,fail. +check_answers_for(_,Ans):- contains_var('BadType',Ans),!,fail. +check_answers_for(TermV,_):- inside_assert(TermV,BaseEval), always_exec(BaseEval),!,fail. + +%check_answers_for([TermV],Ans):- !, check_answers_for(TermV,Ans). +%check_answers_for(TermV,[Ans]):- !, check_answers_for(TermV,Ans). +check_answers_for(_,_). + +got_exec_result2(Val,Nth,Ans):- is_list(Ans), exclude(==(','),Ans,Ans2), Ans\==Ans2,!, + got_exec_result2(Val,Nth,Ans2). +got_exec_result2(Val,Nth,Ans):- + must_det_ll(( + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + if_t( ( \+ is_unit_test_exec(Exec)), + ((equal_enough(Val,Ans) + -> write_pass_fail_result_now(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result_now(TestName,exec,Exec,'FAIL',Ans,Val)))))). + +write_pass_fail_result_now(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + (PASS_FAIL=='PASS'->flag(loonit_success, X, X+1);flag(loonit_failure, X, X+1)), + (PASS_FAIL=='PASS'->Color=cyan;Color=red), + color_g_mesg(Color,write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val)),!,nl, + nl,writeln('--------------------------------------------------------------------------'),!. + +write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,write_mobj(exec,[(['assertEqualToResult',Exec,Ans])]), + nl,write_src('!'(['assertEqual',Val,Ans])), + write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val). + +is_unit_test_exec(Exec):- sformat(S,'~w',[Exec]),sub_atom(S,_,_,_,'assert'). +is_unit_test_exec(Exec):- sformat(S,'~q',[Exec]),sub_atom(S,_,_,_,"!',"). + +return_empty('Empty'). +return_empty(_,Empty):- return_empty(Empty). + +convert_tax(_How,Self,Tax,Expr,NewHow):- + metta_interp_mode(Ch,Mode), + string_concat(Ch,TaxM,Tax),!, + normalize_space(string(NewTax),TaxM), + convert_tax(Mode,Self,NewTax,Expr,NewHow). +convert_tax(How,_Self,Tax,Expr,How):- + %parse_sexpr_metta(Tax,Expr). + normalize_space(string(NewTax),Tax), + read_metta(NewTax,Expr). + + +metta_interp_mode('+',load). +metta_interp_mode('-',unload). +metta_interp_mode('!',exec). +metta_interp_mode('?',call). +metta_interp_mode('^',load_like_file). + + +call_sexpr(Mode,Self,Tax,_S,Out):- + metta_interp_mode(Mode,How), + (atom(Tax);string(Tax)), + normalize_space(string(TaxM),Tax), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + show_call(do_metta(python,NewHow,Self,Expr,Out)). + + +do_metta(_File,_Load,_Self,In,Out):- var(In),!,In=Out. +do_metta(_From,_Mode,_Self,end_of_file,'Empty'):- !. %, halt(7), writeln('\n\n% To restart, use: ?- repl.'). +do_metta(_File,_Load,_Self,Cmt,Out):- Cmt==[],!, Out=[]. + +do_metta(From,Load,Self,'$COMMENT'(Expr,_,_),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,Load,Self,'$STRING'(Expr),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,[Expr],Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,Cmt,Out):- write_comment(Cmt), !, + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog only: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))), + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))),!. + +do_metta(From,How,Self,Src,Out):- string(Src),!, + normalize_space(string(TaxM),Src), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + do_metta(From,NewHow,Self,Expr,Out). + +do_metta(From,_,Self,exec(Expr),Out):- !, do_metta(From,exec,Self,Expr,Out). +do_metta(From,_,Self, call(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,_,Self, ':-'(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,call,Self,TermV,FOut):- !, + call_for_term_variables(TermV,Term,NamedVarsList,X), must_be(nonvar,Term), + copy_term(NamedVarsList,Was), + Output = NamedVarsList, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). +do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). + +do_metta(file(Filename),exec,Self,TermV,Out):- + notrace(( + inc_exec_num(Filename), + must_det_ll(( + get_exec_num(Filename,Nth), + Nth>0)), + file_answers(Filename, Nth, Ans), + check_answers_for(TermV,Ans),!, + must_det_ll(( + color_g_mesg_ok('#ffa500', + (writeln(';; In file as: '), + color_g_mesg([bold,fg('#FFEE58')], write_src(exec(TermV))), + write(';; To unit test case:'))))),!, + do_metta_exec(file(Filename),Self,['assertEqualToResult',TermV,Ans],Out))). + +do_metta(From,exec,Self,TermV,Out):- !, do_metta_exec(From,Self,TermV,Out). + +do_metta_exec(From,Self,TermV,FOut):- + Output = X, + notrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)), + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). + + +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + term_variables(TermV, AllVars), call_for_term_variables4v(TermV,AllVars,Term,NamedVarsList,X),!, + must_be(callable,Term). +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + get_term_variables(TermV, DCAllVars, Singletons, NonSingletons), + call_for_term_variables5(TermV, DCAllVars, Singletons, NonSingletons, Term,NamedVarsList,X),!, + must_be(callable,Term). + +into_metta_callable(_Self,TermV,Term,X,NamedVarsList,Was):- use_metta_compiler, !, + must_det_ll(((( + + % ignore(Res = '$VAR'('ExecRes')), + RealRes = Res, + compile_for_exec(Res,TermV,ExecGoal),!, + subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), + copy_term(NamedVarsList,Was), + term_variables(Term,Vars), + notrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), + %nl,writeq(Term),nl, + ((\+ \+ + ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), + %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(Term,NamedVarsList,Vars)), + nl)))), + nop(maplist(verbose_unify,Vars)), + %NamedVarsList=[_=RealRealRes|_], + var(RealRes), X = RealRes)))),!. + + +into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, + option_else('stack-max',StackMax,100), + CALL = eval_H(StackMax,Self,Term,X), + notrace(( must_det_ll(( + if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), + subst_vars(TermV,Term,NamedVarsList), + copy_term(NamedVarsList,Was) + %term_variables(Term,Vars), + %nl,writeq(Term),nl, + %skip((\+ \+ + %((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(TermV,Term,NamedVarsList,Vars)),nl)))), + %nop(maplist(verbose_unify,Vars)))))),!. + )))). + +eval_H(StackMax,Self,Term,X):- + (always_exec(Term) -> + if_or_else(eval_args('=',_,StackMax,Self,Term,X), + (fail,subst_args('=',_,StackMax,Self,Term,X))); + call_max_time(eval_args('=',_,StackMax,Self,Term,X),3.0, + (fail,subst_args('=',_,StackMax,Self,Term,X)))). + +eval_H(Term,X):- + if_or_else((eval_args(Term,X),X\==Term),(fail,subst_args(Term,Y),Y\==Term)). + +%eval_H(Term,X):- if_or_else((subst_args(Term,X),X\==Term),(eval_args(Term,Y),Y\==Term)). + +print_goals(TermV):- write_src(TermV). + + +if_or_else(Goal,Else):- call(Goal)*->true;call(Else). + +interacting:- tracing,!. +interacting:- current_prolog_flag(debug,true),!. +interacting:- option_value(interactive,true),!. + +% call_max_time(+Goal, +MaxTime, +Else) +call_max_time(Goal,_MaxTime, Else) :- interacting,!, if_or_else(Goal,Else). +call_max_time(Goal,_MaxTime, Else) :- !, if_or_else(Goal,Else). +call_max_time(Goal, MaxTime, Else) :- + catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). + + +catch_err(G,E,C):- catch(G,E,(atom(E)->throw(E);C)). + +%repl:- option_value('repl',prolog),!,prolog. +%:- ensure_loaded(metta_toplevel). + +%:- discontiguous do_metta_exec/3. + +repl:- setup_call_cleanup(flag(repl_level,Was,Was+1),repl0, + (flag(repl_level,_,Was),(Was==0 -> maybe_halt(7) ; true))). + +repl0:- catch(repl2,end_of_input,true). +repl1:- + with_option('doing_repl',true, + with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). +repl2:- +%notrace((current_input(In),nop(catch(load_history,_,true)))), + % ignore(install_readline(In)), + repeat, + %with_option(not_a_reload,true,make), + catch(once(repl3),restart_reading,true),fail. +repl3:- + notrace(( flag(eval_num,_,0), + current_space(Self), + ((nb_current(read_mode,Mode),Mode\==[])->true;Mode='!'), + ignore(shell('stty sane ; stty echo')), + current_input(In), + format(atom(P),'metta ~w ~w> ',[Self, Mode]))), + setup_call_cleanup( + notrace(prompt(Was,P)), + notrace((ttyflush,read_metta(In,Expr),ttyflush)), + notrace(prompt(_,Was))), + ignore(shell('stty sane ; stty echo')), + notrace(ignore(check_has_directive(Expr))), + notrace(if_t(Expr==end_of_file,throw(end_of_input))), + once(do_metta(repl_true,Mode,Self,Expr,_)). + +check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. +check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). +check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,notrace(throw(restart_reading)). +check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). +check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). +check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(read_mode,ModeChar). +check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),check_has_directive(NEV,true). +check_has_directive(_). +set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). +set_directive(N,V):- N==mode,!,set_directive(read_mode,V). +set_directive(N,V):- show_call(set_option_value(N,V)),!,notrace(throw(restart_reading)). + +read_pending_white_codes(In):- + read_pending_codes(In,[10],[]),!. +read_pending_white_codes(_). + +call_for_term_variables4v(Term,[] ,as_tf(Term,TF),NamedVarsList,TF):- get_global_varnames(NamedVarsList),!. +call_for_term_variables4v(Term,[X] , Term, NamedVarsList,X):- get_global_varnames(NamedVarsList). + + +not_in_eq(List, Element) :- + member(V, List), V == Element. + +get_term_variables(Term, DontCaresN, CSingletonsN, CNonSingletonsN) :- + term_variables(Term, AllVars), + get_global_varnames(VNs), + writeqln(term_variables(Term, AllVars)=VNs), + term_singletons(Term, Singletons), + term_dont_cares(Term, DontCares), + include(not_in_eq(Singletons), AllVars, NonSingletons), + include(not_in_eq(DontCares), NonSingletons, CNonSingletons), + include(not_in_eq(DontCares), Singletons, CSingletons), + maplist(into_named_vars,[DontCares, CSingletons, CNonSingletons], + [DontCaresN, CSingletonsN, CNonSingletonsN]), + writeqln([DontCaresN, CSingletonsN, CNonSingletonsN]). + +term_dont_cares(Term, DontCares):- + term_variables(Term, AllVars), + get_global_varnames(VNs), + include(has_sub_var(AllVars),VNs,HVNs), + include(underscore_vars,HVNs,DontCareNs), + maplist(arg(2),DontCareNs,DontCares). + +into_named_vars(Vars,L):- is_list(Vars), !, maplist(name_for_var_vn,Vars,L). +into_named_vars(Vars,L):- term_variables(Vars,VVs),!,into_named_vars(VVs,L). + +has_sub_var(AllVars,_=V):- sub_var(V,AllVars). +underscore_vars(V):- var(V),!,name_for_var(V,N),!,underscore_vars(N). +underscore_vars(N=_):- !, atomic(N),!,underscore_vars(N). +underscore_vars(N):- atomic(N),!,atom_concat('_',_,N). + +get_global_varnames(VNs):- nb_current('variable_names',VNs),VNs\==[],!. +get_global_varnames(VNs):- prolog_load_context(variable_names,VNs),!. +maybe_set_var_names(List):- List==[],!. +maybe_set_var_names(List):- % wdmsg(maybe_set_var_names(List)), + is_list(List),!,nb_linkval(variable_names,List). +maybe_set_var_names(_). + +name_for_var_vn(V,N=V):- name_for_var(V,N). + +name_for_var(V,N):- var(V),!,get_global_varnames(VNs),member(N=VV,VNs),VV==V,!. +name_for_var(N=_,N):- !. +name_for_var(V,N):- term_to_atom(V,N),!. + + + %call_for_term_variables5(Term,[],as_tf(Term,TF),[],TF):- atom(Term),!. +call_for_term_variables5(Term,[],[],[],as_tf(Term,TF),[],TF):- ground(Term),!. +call_for_term_variables5(Term,DC,[],[],call_nth(Term,TF),DC,TF):- ground(Term),!. +call_for_term_variables5(Term,_,[],[_=Var],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,[_=Var],[],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,Vars,[_=Var],Term,Vars,Var). +call_for_term_variables5(Term,_,[_=Var],Vars,Term,Vars,Var). +call_for_term_variables5(Term,_,SVars,Vars,call_nth(Term,Count),[Vars,SVars],Count). + + + +is_interactive(From):- notrace(is_interactive0(From)). +is_interactive0(From):- From==false,!,fail. +is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). +is_interactive0(From):- From = repl_true,!. +is_interactive0(From):- From = true,!. + + +:- set_prolog_flag(history, 20). + +inside_assert(Var,Var):- \+ compound(Var),!. +inside_assert([H,IA,_],IA):- atom(H),atom_concat('assert',_,H),!. +inside_assert(Conz,Conz):- is_conz(Conz),!. +inside_assert(call(I),O):- !, inside_assert(I,O). +inside_assert( ?-(I), O):- !, inside_assert(I,O). +inside_assert( :-(I), O):- !, inside_assert(I,O). +inside_assert(exec(I),O):- !, inside_assert(I,O). +inside_assert(eval_H(A,B,I,C),eval_H(A,B,O,C)):- !, inside_assert(I,O). +inside_assert(eval_H(I,C),eval_H(O,C)):- !, inside_assert(I,O). +inside_assert(Eval,O):- functor(Eval,F,A), atom_concat('eval',_,F), A1 is A-1, arg(A1,Eval,I),!, inside_assert(I,O). +inside_assert(I,O):- I=..[_,F|_],!,compound(F),inside_assert(F,O). +inside_assert(Var,Var). + +current_space(Self):- ((nb_current(self_space,Self),Self\==[])->true;Self='&self'). + +eval(all(Form)):- nonvar(Form), !, forall(eval(Form,_),true). +eval(Form):- + current_space(Self), + do_metta(true,exec,Self,Form,_Out). + +eval(Self,Form):- + current_space(SelfS),SelfS==Self,!, + do_metta(true,exec,Self,Form,_Out). +eval(Form,Out):- + current_space(Self), + eval(Self,Form,Out). + + +eval(Self,Form,Out):- + do_metta(prolog,exec,Self,Form,Out). + +name_vars(X='$VAR'(X)). + +interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + notrace(( + Result = res(FOut), + inside_assert(Term,BaseEval), + option_else(answer,Leap,each), + Control = contrl(Leap), + Skipping = _, + % Initialize Control as a compound term with 'each' as its argument. + %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), + (((From = file(_Filename), option_value('exec',skip), \+ always_exec(BaseEval))) + -> (GG = (skip(Term),deterministic(Complete)), + %Output = + %FOut = "Skipped", + Skipping = 1,!, + %color_g_mesg('#da70d6', (write('% SKIPPING: '), writeq(eval_H(100,Self,BaseEval,X)),writeln('.'))), + % color_g_mesg('#fa90f6', (writeln('; SKIPPING'), with_indents(true,write_src(exec(BaseEval))))), + % if_t(is_list(BaseEval),add_history_src(exec(TermV))), + true + ) + ; GG = locally(set_prolog_flag(gc,false), + ( (dcall(Term),deterministic(Complete)), nb_setarg(1,Result,Output))), + + !, % metta_toplevel + flag(result_num,_,0), + PL=eval(Self,BaseEval,X), + ( % with_indents(true, + \+ \+ ( + maplist(name_vars,NamedVarsList), + name_vars('OUT'=X), + % add_history_src(exec(BaseEval)), + write_exec(TermV), + if_t(Skipping==1,writeln(' ; SKIPPING')), + if_t(TermV\=BaseEval,color_g_mesg('#fa90f6', (write('; '), with_indents(false,write_src(exec(BaseEval)))))), + if_t((is_interactive(From);Skipping==1), + ( + if_t( \+ option_value(doing_repl,true), + if_t( \+ option_value(repl,true), + if_t( option_value(prolog,true), add_history_pl(PL)))), + if_t(option_value(repl,true), add_history_src(exec(BaseEval))))), + + color_g_mesg('#da70d6', (write('% DEBUG: '), writeq(PL),writeln('.'))), + true))))), + + (forall_interactive( + From, WasInteractive,Complete,may_rtrace(GG), + ((Complete==true->!;true), + %repeat, + set_option_value(interactive,WasInteractive), + nb_setarg(1,Result,Output), + read_pending_codes(user_input,_,[]), + flag(result_num,R,R+1), + flag(result_num,ResNum,ResNum), + (((ResNum==1,Complete==true)->(format('~NDeterministic: ', []), !); %or Nondet + ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); + format('~NNDet Result(~w): ',[ResNum])))), + color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), + color_g_mesg(green, + ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))), + ((Complete\==true, WasInteractive, Control \== contrl(leap))-> + (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, + (C=='b' -> (once(repl),fail) ; + (C=='m' -> make ; + (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; + (C=='T' -> (set_debug(eval,true)); + (C==';' -> true ; + (C==esc('[A',[27,91,65]) -> nb_setarg(1, Control, leap) ; + (C=='l' -> nb_setarg(1, Control, leap) ; + (((C=='\n');(C=='\r')) -> (!,fail); + (!,fail))))))))))); + (Complete\==true, \+ WasInteractive, Control == contrl(leap)) -> true ; + (((Complete==true ->! ; true))))) + *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) + ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,fail);true))), + ignore(Result = res(FOut)). + + +get_single_char_key(O):- get_single_char(C),get_single_char_key(C,O). +get_single_char_key(27,esc(A,[27|O])):- !,read_pending_codes(user_input,O,[]),name(A,O). +get_single_char_key(C,A):- name(A,[C]). + +forall_interactive(file(_),false,Complete,Goal,After):- !, Goal, (Complete==true -> ( After,!) ; ( \+ After )). +forall_interactive(prolog,false,Complete,Goal,After):- !, Goal, (Complete == true -> ! ; true), quietly(After). +forall_interactive(From,WasInteractive,Complete,Goal,After):- + (is_interactive(From) -> WasInteractive = true ; WasInteractive = false),!, + Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). + +print_var(Name=Var) :- print_var(Name,Var). +print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. + +% Entry point for the user to call with tracing enabled +toplevel_goal(Goal) :- + term_variables(Goal,Vars), + trace_goal(Vars, Goal, trace_off). + +% Entry point for the user to call with tracing enabled +trace_goal(Goal) :- + trace_goal(Goal, trace_on). + +% Handle tracing +trace_goal(Goal, Tracing) :- + (Tracing == trace_on -> writeln('Entering goal:'), writeln(Goal) ; true), + term_variables(Goal, Variables), + ( call(Goal) -> + (Tracing == trace_on -> writeln('Goal succeeded with:'), writeln(Variables) ; true), + interact(Variables, Goal, Tracing) + ; (Tracing == trace_on -> writeln('Goal failed.') ; true), + false + ). + +% Interaction with the user +interact(Variables, Goal, Tracing) :- + call(Goal),write('Solution: '), write_src(Variables), + write(' [;next]?'), + get_single_char(Code), + (command(Code, Command) -> + handle_command(Command, Variables, Goal, Tracing) + ; writeln('Unknown command.'), interact(Variables, Goal, Tracing) % handle unknown commands + ). + +install_readline(Input):- + add_history_string("!(pfb3)"), + add_history_string("!(load-flybase-full)"), + add_history_string("!(obo-alt-id $X BS:00063)"), + add_history_string("!(and (total-rows $T TR$) (unique-values $T2 $Col $TR))"), + ignore(editline:el_wrap), + ignore(editline:add_prolog_commands(Input)). + + + + +% Command descriptions +command(59, retry). % ';' to retry +command(115, skip). % 's' to skip to the next solution +command(108, leap). % 'l' to leap (end the debugging session) +command(103, goals). % 'g' to show current goals +command(102, fail). % 'f' to force fail +command(116, trace). % 't' to toggle tracing +command(117, up). % 'u' to continue without interruption +command(101, exit). % 'e' to exit the debugger +command(97, abort). % 'a' to abort +command(98, break). % 'b' to set a breakpoint +command(99, creep). % 'c' to proceed step by step +command(104, help). % 'h' for help +command(65, alternatives). % 'A' for alternatives +command(109, make). % 'm' for make (recompile) +command(67, compile). % 'C' for Compile (compile new executable) + +:- style_check(-singleton). + +% Command implementations +handle_command(make, Variables, Goal, Tracing) :- + writeln('Recompiling...'), + % Insert the logic to recompile the code. + % This might involve calling `make/0` or similar. + make, % This is assuming your Prolog environment has a `make` predicate. + fail. % interact(Variables, Goal, Tracing). + +handle_command(compile, Variables, Goal, Tracing) :- + writeln('Compiling new executable...'), + % Insert the logic to compile a new executable. + % This will depend on how you compile Prolog programs in your environment. + % For example, you might use `qsave_program/2` to create an executable. + % Pseudocode: compile_executable(ExecutableName) + fail. % interact(Variables, Goal, Tracing). +handle_command(alternatives, Variables, Goal, Tracing) :- + writeln('Showing alternatives...'), + % Here you would include the logic for displaying the alternatives. + % For example, showing other clauses that could be tried for the current goal. + writeln('Alternatives for current goal:'), + writeln(Goal), + % Pseudocode: find_alternatives(Goal, Alternatives) + % Pseudocode: print_alternatives(Alternatives) + fail. % interact(Variables, Goal, Tracing). +% Extend the command handling with the 'help' command implementation +handle_command(help, Variables, Goal, Tracing) :- + print_help, + fail. % interact(Variables, Goal, Tracing). +handle_command(abort, _, _, _) :- + writeln('Aborting...'), abort. +handle_command(break, Variables, Goal, Tracing) :- + writeln('Breakpoint set.'), % Here you should define what 'setting a breakpoint' means in your context + fail. % interact(Variables, Goal, Tracing). +handle_command(creep, Variables, Goal, Tracing) :- + writeln('Creeping...'), % Here you should define how to 'creep' (step by step execution) through the code + trace. % interact(Variables, Goal, Tracing). +handle_command(retry, Variables, Goal, Tracing) :- + writeln('Continuing...'),!. + %trace_goal(Goal, Tracing). +handle_command(skip, Variables, Goal, Tracing) :- + writeln('Skipping...'). +handle_command(leap, _, _, _) :- + writeln('Leaping...'), nontrace. % Cut to ensure we stop the debugger +handle_command(goals, Variables, Goal, Tracing) :- + writeln('Current goal:'), writeln(Goal), + writeln('Current variables:'), writeln(Variables), + bt,fail. % interact(Variables, Goal, Tracing). +handle_command(fail, _, _, _) :- + writeln('Forcing failure...'), fail. +handle_command(trace, Variables, Goal, Tracing) :- + (Tracing == trace_on -> + NewTracing = trace_off, writeln('Tracing disabled.') + ; NewTracing = trace_on, writeln('Tracing enabled.') + ), + interact(Variables, Goal, NewTracing). +handle_command(up, Variables, Goal, Tracing) :- + writeln('Continuing up...'), + repeat, + ( trace_goal(Goal, Tracing) -> true ; !, fail ). +handle_command(exit, _, _, _) :- + writeln('Exiting debugger...'), !. % Cut to ensure we exit the debugger + +:- style_check(+singleton). + + +% Help description +print_help :- + writeln('Debugger commands:'), + writeln('(;) next - Retry with next solution.'), + writeln('(g) goal - Show the current goal.'), + writeln('(u) up - Finish this goal without interruption.'), + writeln('(s) skip - Skip to the next solution.'), + writeln('(c) creep or - Proceed step by step.'), + writeln('(l) leap - Leap over (the debugging).'), + writeln('(f) fail - Force the current goal to fail.'), + writeln('(B) back - Go back to the previous step.'), + writeln('(t) trace - Toggle tracing on or off.'), + writeln('(e) exit - Exit the debugger.'), + writeln('(a) abort - Abort the current operation.'), + writeln('(b) break - Break to a new sub-REPL.'), + writeln('(h) help - Display this help message.'), + writeln('(A) alternatives - Show alternative solutions.'), + writeln('(m) make - Recompile/Update the current running code.'), + writeln('(C) compile - Compile a fresh executable (based on the running state).'), + writeln('(E) error msg - Show the latest error messages.'), + writeln('(r) retry - Retry the previous command.'), + writeln('(I) info - Show information about the current state.'), + !. + + + + +really_trace:- once(option_value('exec',rtrace);option_value('eval',rtrace);is_debugging((exec));is_debugging((eval))). +% !(pragma! exec rtrace) +may_rtrace(Goal):- really_trace,!, really_rtrace(Goal). +may_rtrace(Goal):- rtrace_on_existence_error(time_eval(dcall(Goal)))*->true;really_rtrace(Goal). +really_rtrace(Goal):- use_metta_compiler,!,rtrace(call(Goal)). +really_rtrace(Goal):- with_debug((eval),with_debug((exec),Goal)). + +rtrace_on_existence_error(G):- !, catch(G,E,(wdmsg(E),rtrace(G))). +%rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). + + + +write_compiled_exec(Exec,Goal):- +% ignore(Res = '$VAR'('ExecRes')), + compile_for_exec(Res,Exec,Goal), + notrace((color_g_mesg('#114411',portray_clause(exec(Res):-Goal)))). + +verbose_unify(Term):- verbose_unify(trace,Term). +verbose_unify(What,Term):- term_variables(Term,Vars),maplist(verbose_unify0(What),Vars),!. +verbose_unify0(What,Var):- put_attr(Var,verbose_unify,What). +verbose_unify:attr_unify_hook(Attr, Value) :- + format('~N~q~n',[verbose_unify:attr_unify_hook(Attr, Value)]), + vu(Attr,Value). +vu(_Attr,Value):- is_ftVar(Value),!. +vu(fail,_Value):- !, fail. +vu(true,_Value):- !. +vu(trace,_Value):- trace. +:- nodebug(metta(eval)). +:- nodebug(metta(exec)). +% Measures the execution time of a Prolog goal and displays the duration in seconds, +% milliseconds, or microseconds, depending on the execution time. +% +% Args: +% - Goal: The Prolog goal to be executed and timed. +% +% The predicate uses the `statistics/2` predicate to measure the CPU time before +% and after executing the provided goal. It calculates the elapsed time in seconds +% and converts it to milliseconds and microseconds. The output is formatted to +% provide clear timing information: +% +% - If the execution takes more than 2 seconds, it displays the time in seconds. +% - If the execution takes between 1 millisecond and 2 seconds, it displays the time +% in milliseconds. +% - If the execution takes less than 1 millisecond, it displays the time in microseconds. +% +% Example usage: +% ?- time_eval(my_goal(X)). +% +% ?- time_eval(sleep(0.95)). +% +% Output examples: +% ; Evaluation took 2.34 seconds. +% ; Evaluation took 123.45 ms. +% ; Evaluation took 0.012 ms. (12.33 microseconds) +% +time_eval(Goal):- + time_eval('Evaluation',Goal). +time_eval(What,Goal) :- + statistics(cputime, Start), + call(Goal), + statistics(cputime, End), + Seconds is End - Start, + Milliseconds is Seconds * 1_000, + (Seconds > 2 + -> format('; ~w took ~2f seconds.~n', [What, Seconds]) + ; (Milliseconds >= 1 + -> format('; ~w took ~3f secs. (~2f milliseconds) ~n', [What, Seconds, Milliseconds]) + ;( Micro is Milliseconds * 1_000, + format('; ~w took ~6f secs. (~2f microseconds) ~n', [What, Seconds, Micro])))). + +example0(_):- fail. +example1(a). example1(_):- fail. +example2(a). example2(b). example2(_):- fail. +example3(a). example3(b). example3(c). example3(_):- fail. +%eval_H(100,'&self',['change-state!','&var',[+,1,['get-state','&var']]],OUT) +%dcall(X):- (call(X),deterministic(YN)),trace,((YN==true)->!;true). +dcall(XX):- !, call(XX). +dcall(XX):- + USol = sol(dead), + copy_term(XX,X), + call_nth(USol,X,Nth,Det,Prev), + %wdmsg(call_nth(USol,X,Nth,Det,Prev)), + XX=Prev, + (Det==yes -> (!, (XX=Prev;XX=X)) ; + (((var(Nth) -> ( ! , Prev\==dead) ; + true), + (Nth==1 -> ! ; true)))). + +call_nth(USol,XX,Nth,Det,Prev):- + repeat, + ((call_nth(XX,Nth),deterministic(Det),arg(1,USol,Prev))*-> + ( nb_setarg(1,USol,XX)) + ; (!, arg(1,USol,Prev))). + +catch_red(Term):- catch(Term,E,pp_m(red,in(Term,E))). + +s2p(I,O):- sexpr_s2p(I,O),!. + +discover_head(Self,Load,Head):- + ignore(([Fn|PredDecl]=Head, + nop(( arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_head(Self,Fn,EachArg)))))). + +discover_body(Self,Load,Body):- + nop(( [Fn|PredDecl] = Body, arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_body(Self,Fn,EachArg)))). + +decl_length(TypeDecL,Len):- is_list(TypeDecL),!,length(TypeDecL,Len). +decl_length(_TypeDecL,1). + +arg_types([['->'|L]],R,LR):-!, arg_types(L,R,LR). +arg_types(['->'|L],R,LR):-!, arg_types(L,R,LR). +arg_types(L,R,LR):- append(L,R,LR). + +%:- ensure_loaded('../../examples/factorial'). +%:- ensure_loaded('../../examples/fibonacci'). + +%print_preds_to_functs:-preds_to_functs_src(factorial_tail_basic) + +:- dynamic(began_loon/1). +loon:- loon(typein). + +catch_red_ignore(G):- catch_red(G)*->true;true. + +:- export(loon/1). +:- public(loon/1). + +%loon(Why):- began_loon(Why),!,wdmsg(begun_loon(Why)). +loon(Why):- is_compiling,!,wdmsg(compiling_loon(Why)),!. +%loon( _Y):- current_prolog_flag(os_argv,ArgV),member('-s',ArgV),!. +loon(Why):- is_compiled, Why\==toplevel,Why\==default, Why\==program,!,wdmsg(compiled_loon(Why)),!. +loon(Why):- began_loon(_),!,wdmsg(skip_loon(Why)). +loon(Why):- wdmsg(began_loon(Why)), assert(began_loon(Why)), + do_loon. + +do_loon:- + ignore(( + \+ prolog_load_context(reloading,true), + maplist(catch_red_ignore,[ + + metta_final, + load_history, + update_changed_files, + run_cmd_args, + pre_halt, + maybe_halt(7)]))),!. + + + +pre_halt:- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),pre_halt)). +pre_halt:- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),pre_halt)). +pre_halt:- loonit_report. +%loon:- time(loon_metta('./examples/compat/test_scripts/*.metta')),fail. +%loon:- repl, (option_value('halt',false)->true;halt(7)). +%maybe_halt(Seven):- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,halt(Seven). +maybe_halt(_):- once(pre_halt), fail. +maybe_halt(Seven):- option_value('halt',true),!,halt(Seven). +maybe_halt(Seven):- wdmsg(maybe_halt(Seven)). + +is_compiling:- current_prolog_flag(os_argv,ArgV),member(E,ArgV), + (E==qcompile_mettalog;E==qsave_program),!. +is_compiled:- current_prolog_flag(os_argv,ArgV),\+ member('swipl',ArgV),!. +is_converting:- nb_current('convert','True'),!. +is_converting:- current_prolog_flag(os_argv,ArgV), member('--convert',ArgV),!. +show_os_argv:- current_prolog_flag(os_argv,ArgV),write('; libswipl: '),writeln(ArgV). +is_pyswip:- current_prolog_flag(os_argv,ArgV),member( './',ArgV). +% libswipl: ['./','-q',--home=/usr/local/lib/swipl] + +:- initialization(show_os_argv). + +:- initialization(loon(program),program). +:- initialization(loon(default)). + +ensure_mettalog_system:- + abolish(began_loon/1), + dynamic(began_loon/1), + system:use_module(library(quasi_quotations)), + system:use_module(library(hashtable)), + system:use_module(library(gensym)), + system:use_module(library(sort)), + system:use_module(library(writef)), + system:use_module(library(rbtrees)), + system:use_module(library(dicts)), + system:use_module(library(shell)), + system:use_module(library(edinburgh)), + % system:use_module(library(lists)), + system:use_module(library(statistics)), + system:use_module(library(nb_set)), + system:use_module(library(assoc)), + system:use_module(library(pairs)), + user:use_module(library(swi_ide)), + user:use_module(library(prolog_profile)), + ensure_loaded('./metta_vspace/pyswip/flybase_convert'), + ensure_loaded('./metta_vspace/pyswip/flybase_main'), + autoload_all, + make, + autoload_all, + %pack_install(predicate_streams, [upgrade(true),global(true)]), + %pack_install(logicmoo_utils, [upgrade(true),global(true)]), + %pack_install(dictoo, [upgrade(true),global(true)]), + !. + +file_save_name(E,_):- \+ atom(E),!,fail. +file_save_name(E,Name):- file_base_name(E,BN),BN\==E,!,file_save_name(BN,Name). +file_save_name(E,E):- atom_concat('Sav.',_,E),!. +file_save_name(E,E):- atom_concat('Bin.',_,E),!. +before_underscore(E,N):-atomic_list_concat([N|_],'_',E),!. +save_name(Name):- current_prolog_flag(os_argv,ArgV),member(E,ArgV),file_save_name(E,Name),!. +next_save_name(Name):- save_name(E), + before_underscore(E,N), + atom_concat(N,'_',Stem), + gensym(Stem,Name), + \+ exists_file(Name), + Name\==E,!. +next_save_name('Sav.MeTTaLog'). +qcompile_mettalog:- + ensure_mettalog_system, + catch(qsave_program('Sav.MeTTaLog', + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(true)]),E,writeln(E)), + halt(0). +qsave_program:- ensure_mettalog_system, next_save_name(Name), + catch(qsave_program(Name, + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(false)]),E,writeln(E)), + !. + + +:- initialization(update_changed_files,restore). + +:- ignore((( + \+ prolog_load_context(reloading,true), + initialization(loon(restore),restore), + metta_final +))). +:- set_prolog_flag(metta_interp,ready). diff --git a/metta_vspace/pyswip-12-15/metta_interp.pl b/metta_vspace/pyswip-12-15/metta_interp.pl new file mode 100755 index 00000000..a1592518 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_interp.pl @@ -0,0 +1,2066 @@ +:- encoding(iso_latin_1). +:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). +is_compiling:- current_prolog_flag(os_argv,ArgV),member(E,ArgV), + (E==qcompile_mettalog;E==qsave_program),!. +is_compiled:- current_prolog_flag(os_argv,ArgV), member('-x',ArgV),!. +is_compiled:- current_prolog_flag(os_argv,ArgV),\+ member('swipl',ArgV),!. +is_converting:- nb_current('convert','True'),!. +is_converting:- current_prolog_flag(os_argv,ArgV), member('--convert',ArgV),!. +show_os_argv:- current_prolog_flag(os_argv,ArgV),write('; libswipl: '),writeln(ArgV). +is_pyswip:- current_prolog_flag(os_argv,ArgV),member( './',ArgV). +:- multifile(is_metta_data_functor/1). +:- dynamic(is_metta_data_functor/1). +:- multifile(is_nb_space/1). +:- dynamic(is_nb_space/1). +%:- '$set_source_module'('user'). +:- set_stream(user_input,tty(true)). +:- use_module(library(readline)). +%:- use_module(library(editline)). +:- use_module(library(filesex)). +:- use_module(library(shell)). +%:- use_module(library(tabling)). +:- use_module(library(system)). +:- ensure_loaded(metta_compiler). +%:- ensure_loaded(metta_types). +:- ensure_loaded(metta_data). +:- ensure_loaded(metta_space). +:- ensure_loaded(metta_eval). +:- ensure_loaded(flybase_main). +:- set_stream(user_input,tty(true)). +:- set_prolog_flag(encoding,iso_latin_1). +:- set_prolog_flag(encoding,utf8). +%:- set_prolog_flag(encoding,octet). +/* +Now PASSING NARS.TEC:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip\metta_interp.pl +C:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip1\metta_interp.pl +STS1.01) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.08) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.14) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.15) +Now PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.15) +Now PASSING TEST-SCRIPTS.E2-STATES.08) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.02) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.07) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.09) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.11) +PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.14) +PASSING TEST-SCRIPTS.E2-STATES.07) +----------------------------------------- +FAILING TEST-SCRIPTS.D5-AUTO-TYPES.01) +Now FAILING TEST-SCRIPTS.00-LANG-CASE.03) +Now FAILING TEST-SCRIPTS.B5-TYPES-PRELIM.19) +Now FAILING TEST-SCRIPTS.C1-GROUNDED-BASIC.20) + +*/ + + +option_value_def('repl',auto). +option_value_def('prolog',false). +option_value_def('compile',false). +option_value_def('table',false). +option_value_def(no_repeats,false). +option_value_def('time',true). +option_value_def('exec',true). +option_value_def('html',false). +option_value_def('python',false). +option_value_def('halt',false). +option_value_def('doing_repl',false). +option_value_def('test-retval',false). +option_value_def('trace-length',100). +option_value_def('stack-max',100). +option_value_def('trace-on-overtime',20.0). +option_value_def('trace-on-overflow',false). +option_value_def('trace-on-error',true). +option_value_def('trace-on-load',true). +option_value_def('trace-on-exec',true). +option_value_def('trace-on-eval',true). +option_value_def('trace-on-fail',false). +option_value_def('trace-on-pass',false). + + + + +set_is_unit_test(TF):- + set_option_value('trace-on-load',TF), + set_option_value('trace-on-exec',TF), + set_option_value('trace-on-eval',TF), + set_option_value('trace-on-pass',false), + set_option_value('trace-on-fail',false), + set_option_value('exec',rtrace), + set_option_value('eval',rtrace), + !. + +:- set_is_unit_test(true). +%:- set_is_unit_test. + +trace_on_fail:- option_value('trace-on-fail',true). +trace_on_overflow:- option_value('trace-on-overflow',true). +trace_on_pass:- option_value('trace-on-pass',true). +doing_repl:- option_value('doing_repl',true). +if_repl(Goal):- doing_repl->call(Goal);true. + +any_floats(S):- member(E,S),float(E),!. + +% ============================ +% %%%% Arithmetic Operations +% ============================ +%:- use_module(library(clpfd)). +:- use_module(library(clpq)). +%:- use_module(library(clpr)). + +% Addition +%'+'(Addend1, Addend2, Sum):- \+ any_floats([Addend1, Addend2, Sum]),!,Sum #= Addend1+Addend2 . +'+'(Addend1, Addend2, Sum):- mnotrace(catch_err(plus(Addend1, Addend2, Sum),_,fail)),!. +'+'(Addend1, Addend2, Sum):- {Sum = Addend1+Addend2}. +% Subtraction +'-'(Sum, Addend1, Addend2):- '+'(Addend1, Addend2, Sum). + +% Multiplication +'*'(Factor1, Factor2, Product):- {Product = Factor1*Factor2}. +% Division +'/'(Dividend, Divisor, Quotient):- {Dividend = Quotient * Divisor}. +% Modulus +'mod'(Dividend, Divisor, Remainder):- {Remainder = Dividend mod Divisor}. +% Exponentiation +'exp'(Base, Exponent, Result):- eval_H(['exp', Base, Exponent], Result). +% Square Root +'sqrt'(Number, Root):- eval_H(['sqrt', Number], Root). + +% ============================ +% %%%% List Operations +% ============================ +% Retrieve Head of the List +'car-atom'(List, Head):- eval_H(['car-atom', List], Head). +% Retrieve Tail of the List +'cdr-atom'(List, Tail):- eval_H(['cdr-atom', List], Tail). +% Construct a List +'Cons'(Element, List, 'Cons'(Element, List)):- !. +% Collapse List +'collapse'(List, CollapsedList):- eval_H(['collapse', List], CollapsedList). +% Count Elements in List +'CountElement'(List, Count):- eval_H(['CountElement', List], Count). +% Find Length of List +%'length'(List, Length):- eval_H(['length', List], Length). + +% ============================ +% %%%% Nondet Opteration +% ============================ +% Superpose a List +'superpose'(List, SuperposedList):- eval_H(['superpose', List], SuperposedList). + +% ============================ +% %%%% Testing +% ============================ + +% `assertEqual` Predicate +% This predicate is used for asserting that the Expected value is equal to the Actual value. +% Expected: The value that is expected. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: `assertEqual(5, 5, Result).` would succeed, setting Result to true (or some success indicator). +%'assertEqual'(Expected, Actual, Result):- use_metta_compiler,!,as_tf((Expected=Actual),Result). +'assertEqual'(Expected, Actual, Result):- ignore(Expected=Actual), eval_H(['assertEqual', Expected, Actual], Result). + +% `assertEqualToResult` Predicate +% This predicate asserts that the Expected value is equal to the Result of evaluating Actual. +% Expected: The value that is expected. +% Actual: The expression whose evaluation is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: If Actual evaluates to the Expected value, this would succeed, setting Result to true (or some success indicator). +'assertEqualToResult'(Expected, Actual, Result):- eval_H(['assertEqualToResult', Expected, Actual], Result). + +% `assertFalse` Predicate +% This predicate is used to assert that the evaluation of EvalThis is false. +% EvalThis: The expression that is being evaluated and checked for falsehood. +% Result: The result of the evaluation. +% Example: `assertFalse((1 > 2), Result).` would succeed, setting Result to true (or some success indicator), as 1 > 2 is false. +'assertFalse'(EvalThis, Result):- eval_H(['assertFalse', EvalThis], Result). + +% `assertNotEqual` Predicate +% This predicate asserts that the Expected value is not equal to the Actual value. +% Expected: The value that is expected not to match the Actual value. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the inequality. +% Example: `assertNotEqual(5, 6, Result).` would succeed, setting Result to true (or some success indicator). +'assertNotEqual'(Expected, Actual, Result):- eval_H(['assertNotEqual', Expected, Actual], Result). + +% `assertTrue` Predicate +% This predicate is used to assert that the evaluation of EvalThis is true. +% EvalThis: The expression that is being evaluated and checked for truth. +% Result: The result of the evaluation. +% Example: `assertTrue((2 > 1), Result).` would succeed, setting Result to true (or some success indicator), as 2 > 1 is true. +'assertTrue'(EvalThis, Result):- eval_H(['assertTrue', EvalThis], Result). + +% `rtrace` Predicate +% This predicate is likely used for debugging; possibly for tracing the evaluation of Condition. +% Condition: The condition/expression being traced. +% EvalResult: The result of the evaluation of Condition. +% Example: `rtrace((2 + 2), EvalResult).` would trace the evaluation of 2 + 2 and store its result in EvalResult. +'rtrace'(Condition, EvalResult):- eval_H(['rtrace', Condition], EvalResult). + +% `time` Predicate +% This predicate is used to measure the time taken to evaluate EvalThis. +% EvalThis: The expression whose evaluation time is being measured. +% EvalResult: The result of the evaluation of EvalThis. +% Example: `time((factorial(5)), EvalResult).` would measure the time taken to evaluate factorial(5) and store its result in EvalResult. +'time'(EvalThis, EvalResult):- eval_H(['time', EvalThis], EvalResult). + +% ============================ +% %%%% Debugging, Printing and Utility Operations +% ============================ +% REPL Evaluation +'repl!'(EvalResult):- eval_H(['repl!'], EvalResult). +% Condition Evaluation +'!'(Condition, EvalResult):- eval_H(['!', Condition], EvalResult). +% Import File into Environment +'import!'(Environment, Filename, Namespace):- eval_H(['import!', Environment, Filename], Namespace). +% Evaluate Expression with Pragma +'pragma!'(Environment, Expression, EvalValue):- eval_H(['pragma!', Environment, Expression], EvalValue). +% Print Message to Console +'print'(Message, EvalResult):- eval_H(['print', Message], EvalResult). +% No Operation, Returns EvalResult unchanged +'nop'(Expression, EvalResult):- eval_H(['nop', Expression], EvalResult). + +% ============================ +% %%%% Variable Bindings +% ============================ +% Bind Variables +'bind!'(Environment, Variable, Value):- eval_H(['bind!', Environment, Variable], Value). +% Let binding for single variable +'let'(Variable, Expression, Body, Result):- eval_H(['let', Variable, Expression, Body], Result). +% Sequential let binding +'let*'(Bindings, Body, Result):- eval_H(['let*', Bindings, Body], Result). + +% ============================ +% %%%% Reflection +% ============================ +% Get Type of Value +'get-type'(Value, Type):- eval_H(['get-type', Value], Type). + + +metta_cmd_args(Rest):- current_prolog_flag(late_metta_opts,Rest),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(os_argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,Rest). +run_cmd_args:- metta_cmd_args(Rest), !, do_cmdline_load_metta('&self',Rest). + + +metta_make_hook:- loonit_reset, option_value(not_a_reload,true),!. +metta_make_hook:- + metta_cmd_args(Rest), into_reload_options(Rest,Reload), cmdline_load_metta('&self',Reload). + +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(after, _Some):- nop( metta_make_hook). + +into_reload_options(Reload,Reload). + +is_cmd_option(Opt,M, TF):- atom(M), + atom_concat('-',Opt,Flag), + atom_contains(M,Flag),!, + get_flag_value(M,FV), + TF=FV. + +get_flag_value(M,V):- atomic_list_concat([_,V],'=',M),!. +get_flag_value(M,false):- atom_contains(M,'-no'),!. +get_flag_value(_,true). + + +:- ignore((( + \+ prolog_load_context(reloading,true), + forall(option_value_def(Opt,Default),set_option_value(Opt,Default))))). + +%process_option_value_def:- \+ option_value('python',false), skip(ensure_loaded(metta_python)). +process_option_value_def:- option_value('python',load), ensure_loaded(metta_vspace/pyswip/metta_python). +process_option_value_def. + + +%process_late_opts:- once(option_value('html',true)), once(shell('./total_loonits.sh')). +process_late_opts:- current_prolog_flag(os_argv,[_]),!,ignore(repl). +process_late_opts:- forall(process_option_value_def,true). +%process_late_opts:- halt(7). +process_late_opts. + +%do_cmdline_load_metta(_Slf,Rest):- select('--prolog',Rest,RRest),!, +% set_option_value('prolog',true), +% set_prolog_flag(late_metta_opts,RRest). +do_cmdline_load_metta(Self,Rest):- + set_prolog_flag(late_metta_opts,Rest), + forall(process_option_value_def,true), + cmdline_load_metta(Self,Rest),!, + forall(process_late_opts,true). + +load_metta_file(Self,Filemask):- atom_concat(_,'.metta',Filemask),!, load_metta(Self,Filemask). +load_metta_file(_Slf,Filemask):- load_flybase(Filemask). + +% done +cmdline_load_metta(_,Nil):- Nil==[],!. +cmdline_load_metta(Self,[Filemask|Rest]):- atom(Filemask), \+ atom_concat('-',_,Filemask), + must_det_ll((Src=user:load_metta_file(Self,Filemask),nl,write('; '),write_src(Src),nl,catch_red(Src),!,flush_output, + cmdline_load_metta(Self,Rest))). + +cmdline_load_metta(Self,['-g',M|Rest]):- + read_term_from_atom(M, Term, []), + ignore(call(Term)), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,['-G',Str|Rest]):- !, + current_self(Self), + ignore(call_sexpr('!',Self,Str,_S,_Out)), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + m_opt(M,Opt),!, + is_cmd_option(Opt,M,TF),!, + fbug(is_cmd_option(Opt,M,TF)), !, set_option_value(Opt,TF), + set_tty_color_term(true), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + format('~N'),write('; unused '), write_src(M), nl, !, + cmdline_load_metta(Self,Rest). + + +set_tty_color_term(TF):- + current_output(X),set_stream(X,tty(TF)), + set_stream(current_output,tty(TF)), + set_prolog_flag(color_term ,TF). + +m_opt(M,Opt):- + m_opt0(M,Opt1), + m_opt1(Opt1,Opt). + +m_opt1(Opt1,Opt):- atomic_list_concat([Opt|_],'=',Opt1). + +m_opt0(M,Opt):- atom_concat('--no-',Opt,M),!. +m_opt0(M,Opt):- atom_concat('--',Opt,M),!. +m_opt0(M,Opt):- atom_concat('-',Opt,M),!. + +:- set_prolog_flag(occurs_check,true). + +start_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +start_html_of(_Filename):- + must_det_ll(( + S = _, + %retractall(metta_defn(Eq,S,_,_)), + nop(retractall(metta_type(S,_,_))), + %retractall(get_metta_atom(Eq,S,_,_,_)), + loonit_reset, + tee_file(TEE_FILE), + sformat(S,'cat /dev/null > "~w"',[TEE_FILE]), + + writeln(doing(S)), + ignore(shell(S)))). + +save_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +save_html_of(_):- \+ has_loonit_results, \+ option_value('html',true). +save_html_of(Filename):- + must_det_ll(( + file_name_extension(Base,_,Filename), + file_name_extension(Base,'metta.html',HtmlFilename), + loonit_reset, + tee_file(TEE_FILE), + writeln('
    Return to Summaries
    '), + sformat(S,'ansi2html -u < "~w" > "~w" ',[TEE_FILE,HtmlFilename]), + writeln(doing(S)), + ignore(shell(S)))). + +tee_file(TEE_FILE):- getenv('TEE_FILE',TEE_FILE),!. +tee_file(TEE_FILE):- metta_dir(Dir),directory_file_path(Dir,'TEE.ansi',TEE_FILE),!. +metta_dir(Dir):- getenv('METTA_DIR',Dir),!. + +load_metta(Filename):- + %clear_spaces, + load_metta('&self',Filename). + + +load_metta(_Self,Filename):- Filename=='--repl',!,repl. +load_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + with_wild_path(load_metta(Self),Filename),!,loonit_report. +load_metta(Self,RelFilename):- + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + track_load_into_file(Filename, + include_metta(Self,RelFilename)). + +include_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + must_det_ll(with_wild_path(include_metta(Self),Filename)),!. + +include_metta(Self,RelFilename):- + must_det_ll(( + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), + ((directory_file_path(Directory, _, Filename), + assert(metta_file(Self,Filename,Directory)), + with_cwd(Directory, + must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). + +load_metta_file_stream(Filename,Self,In):- + with_option(loading_file,Filename, + %current_exec_file(Filename), + ((must_det_ll(( + set_exec_num(Filename,1), + load_answer_file(Filename), + set_exec_num(Filename,0))), + once((repeat, (( + current_read_mode(Mode), + once(read_metta(In,Expr)), %write_src(read_metta=Expr),nl, + must_det_ll((((do_metta(file(Filename),Mode,Self,Expr,_O)))->true; + pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), + flush_output)), + at_end_of_stream(In)))))),!. + + +clear_spaces:- clear_space(_). +clear_space(S):- + %retractall(metta_defn(_,S,_,_)), + nop(retractall(metta_type(S,_,_))), + retractall(asserted_metta_atom(S,_)). + + +lsm:- lsm(_). +lsm(S):- + listing(metta_file(S,_,_)), + %listing(mdyn_type(S,_,_,_)), + forall(mdyn_type(S,_,_,Src),color_g_mesg('#22a5ff',write_f_src(Src))), + nl,nl,nl, + forall(mdyn_defn(S,_,_,Src),color_g_mesg('#00ffa5',write_f_src(Src))), + %listing(mdyn_defn(S,_,_,_)), + !. + +write_f_src(H,B):- H=@=B,!,write_f_src(H). +write_f_src(H,B):- write_f_src(['=',H,B]). + +hb_f(HB,ST):- sub_term(ST,HB),(atom(ST),ST\==(=),ST\==(:)),!. +write_f_src(HB):- + hb_f(HB,ST), + option_else(current_def,CST,[]),!, + (CST == ST -> true ; (nl,nl,nl,set_option_value(current_def,ST))), + write_src(HB). + + + +debug_only(G):- mnotrace(ignore(catch_warn(G))). +debug_only(_What,G):- ignore((fail,mnotrace(catch_warn(G)))). + + +'True':- true. +'False':- fail. + + +'metta_learner::vspace-main':- repl. + +into_underscores(D,U):- atom(D),!,atomic_list_concat(L,'-',D),atomic_list_concat(L,'_',U). +into_underscores(D,U):- descend_and_transform(into_underscores,D,U),!. + +into_hyphens(D,U):- atom(D),!,atomic_list_concat(L,'_',D),atomic_list_concat(L,'-',U). +into_hyphens(D,U):- descend_and_transform(into_hyphens,D,U),!. + +descend_and_transform(P2, Input, Transformed) :- + ( var(Input) + -> Transformed = Input % Keep variables as they are + ; compound(Input) + -> (compound_name_arguments(Input, Functor, Args), + maplist(descend_and_transform(P2), Args, TransformedArgs), + compound_name_arguments(Transformed, Functor, TransformedArgs)) + ; (atom(Input),call(P2,Input,Transformed)) + -> true % Transform atoms using xform_atom/2 + ; Transformed = Input % Keep other non-compound terms as they are + ). + +/* +is_syspred(H,Len,Pred):- mnotrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. + +fn_append(List,X,Call):- + fn_append1(List,X,ListX), + into_fp(ListX,Call). + + + + + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + +is_metta_data_functor(Eq,Other,H):- + metta_type(Other,H,_), + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_). +*/ +is_function(F):- atom(F). + +is_False(X):- X\=='True', (is_False1(X)-> true ; (eval_H(X,Y),is_False1(Y))). +is_False1(Y):- (Y==0;Y==[];Y=='False'). + +is_conz(Self):- compound(Self), Self=[_|_]. + +%dont_x(eval_H(Depth,Self,metta_if(A=1,atom_concat(metta_,_,F). +needs_expanded(eval_H(Term,_),Expand):- !,sub_term(Expand,Term),compound(Expand),Expand\=@=Term, + compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). +needs_expanded([A|B],Expand):- sub_term(Expand,[A|B]), compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). + +fn_append1(eval_H(Term,X),X,eval_H(Term,X)):-!. +fn_append1(Term,X,eval_H(Term,X)). + + +% Check if parentheses are balanced in a list of characters +balanced_parentheses(Chars) :- balanced_parentheses(Chars, 0). +balanced_parentheses([], 0). +balanced_parentheses(['('|T], N) :- N1 is N + 1, balanced_parentheses(T, N1). +balanced_parentheses([')'|T], N) :- N > 0, N1 is N - 1, balanced_parentheses(T, N1). +balanced_parentheses([H|T], N) :- H \= '(', H \= ')', balanced_parentheses(T, N). +% Recursive function to read lines until parentheses are balanced. +repl_read(NewAccumulated, Expr):- + atom_concat(Atom, '.', NewAccumulated), + catch_err((read_term_from_atom(Atom, Term, []), Expr=call(Term)), E, + (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. + + +repl_read("!", '!'):-!. +repl_read("+", '+'):-!. +repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. + +repl_read(Str, Expr):- atom_concat('@',_,Str),!,atom_string(Expr,Str). +repl_read(NewAccumulated, Expr):- + normalize_space(string(Renew),NewAccumulated), Renew \== NewAccumulated, !, + repl_read(Renew, Expr). +%repl_read(NewAccumulated,exec(Expr)):- string_concat("!",Renew,NewAccumulated), !, repl_read(Renew, Expr). +repl_read(NewAccumulated, Expr):- string_chars(NewAccumulated, Chars), + balanced_parentheses(Chars), length(Chars, Len), Len > 0, + parse_sexpr_metta(NewAccumulated, Expr), !, + normalize_space(string(Renew),NewAccumulated), + add_history_string(Renew). +repl_read(Accumulated, Expr) :- read_line_to_string(current_input, Line), repl_read(Accumulated, Line, Expr). + +repl_read(_, end_of_file, end_of_file):- throw(end_of_input). + +repl_read(Accumulated, "", Expr):- !, repl_read(Accumulated, Expr). +repl_read(_Accumulated, Line, Expr):- Line == end_of_file, !, Expr = Line. +repl_read(Accumulated, Line, Expr) :- atomics_to_string([Accumulated," ",Line], NewAccumulated), !, + repl_read(NewAccumulated, Expr). + +repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +repl_read(Expr) :- repeat, + remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), + repl_read(Str, Expr1), + once(((atom(Expr1),atom_concat('@',_,Expr1), + \+ atom_contains(Expr1,"="), + repl_read(Expr2)) + -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), + % this cutrs the repeat/0 + ((peek_pending_codes(_,Peek),Peek==[])->!;true). + +add_history_string(Str):- mnotrace(ignore(add_history01(Str))),!. + +add_history_src(Exec):- mnotrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). + +add_history_pl(Exec):- var(Exec), !. +add_history_pl(eval(_,catch_red(PL),_)):- !,add_history_pl(PL). +add_history_pl(show_failure(PL)):-!,add_history_pl(PL). +add_history_pl(as_tf(PL,_OUT)):-!,add_history_pl(PL). +add_history_pl(Exec):- mnotrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). + +read_metta1(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta1(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta1(In,Expr):- string(In),!,parse_sexpr_metta(In,Expr),!. + +read_metta1(In,Expr):- !, get_char(In,Char), !, must_det_ll((read_sform3(s,[],Char,In,Expr))). + +read_metta1(In,Expr):- peek_char(In,Char), read_metta1(In,Char,Expr). + +read_metta1(In,Char,Expr):- char_type(Char,space),get_char(In,Char),put(Char),!,read_metta1(In,Expr). +read_metta1(In,'!',Expr):- get_char(In,_), !, read_metta(In,Read1),!,Expr=exec(Read1). +read_metta1(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),write_comment(Str),!,read_metta(In,Expr))),!. +read_metta1(In,_,Expr):- maybe_read_pl(In,Expr),!. +read_metta1(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). + + +maybe_read_pl(In,Expr):- + peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), + mnotrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, + read_term(In, Term, [])))). +peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. +peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. + + + + +%read_line_to_sexpr(Stream,UnTyped), +read_sform(Str,F):- string(Str),open_string(Str,S),!,read_sform(S,F). +read_sform(S,F):- + read_sform1([],S,F1), + ( F1\=='!' -> F=F1 ; + (read_sform1([],S,F2), F = exec(F2))). + +read_sform1( AltEnd,Str,F):- string(Str),open_string(Str,S),!,read_sform1( AltEnd,S,F). +read_sform1(_AltEnd,S,F):- at_end_of_stream(S),!,F=end_of_file. +read_sform1( AltEnd,S,M):- get_char(S,C),read_sform3(s, AltEnd,C,S,F), untyped_to_metta(F,M). +%read_sform1( AltEnd,S,F):- profile(parse_sexpr_metta(S,F)). + +read_sform3(_AoS,_AltEnd,C,_,F):- C == end_of_file,!,F=end_of_file. +read_sform3( s, AltEnd,C,S,F):- char_type(C,space),!,read_sform1( AltEnd,S,F). +%read_sform3(AoS,_AltEnd,';',S,'$COMMENT'(F,0,0)):- !, read_line_to_string(S,F). +read_sform3( s, AltEnd,';',S,F):- read_line_to_string(S,_),!,read_sform1( AltEnd,S,F). +read_sform3( s, AltEnd,'!',S,exec(F)):- !,read_sform1( AltEnd,S,F). + +read_sform3(_AoS,_AltEnd,'"',S,Text):- !,must_det_ll(atom_until(S,[],'"',Text)). +read_sform3(_AoS,_AltEnd,'`',S,Text):- !,atom_until(S,[],'`',Text). +read_sform3(_AoS,_AltEnd,'\'',S,Text):- !,atom_until(S,[],'\'',Text). +read_sform3(_AoS,_AltEnd,',',_,','):- !. +read_sform3( s , AltEnd,C,S,F):- read_sform4( AltEnd,C,S,F),!. +read_sform3(_AoS, AltEnd,P,S,Sym):- peek_char(S,Peek),!,read_symbol_or_number( AltEnd,Peek,S,[P],Expr),into_symbol_or_number(Expr,Sym). + +into_symbol_or_number(Expr,Sym):- atom_number(Expr,Sym),!. +into_symbol_or_number(Sym,Sym). + +read_sform4(_AltEnd,B,S,Out):- read_sform5(s,B,S,List,E), c_list(E,List,Out). +c_list(')',List,List). c_list('}',List,['{...}',List]). c_list(']',List,['[...]',List]). + + +read_sform5(AoS,'(',S,List,')'):- !,collect_list_until(AoS,S,')',List),!. +read_sform5(AoS,'{',S,List,'}'):- !,collect_list_until(AoS,S,'}',List),!. +read_sform5(AoS,'[',S,List,']'):- !,collect_list_until(AoS,S,']',List),!. + + +read_symbol_or_number(_AltEnd,Peek,_S,SoFar,Expr):- char_type(Peek,space),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). +read_symbol_or_number(AltEnd,B,S,SoFar,Expr):- read_sform5(AltEnd,B,S,List,E),flatten([List,E],F), append(SoFar,F,NSoFar), + peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). +read_symbol_or_number( AltEnd,Peek,_S,SoFar,Expr):- member(Peek,AltEnd),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). +read_symbol_or_number( AltEnd,_Peek,S,SoFar,Expr):- get_char(S,C),append(SoFar,[C],NSoFar), + peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). + +atom_until(S,SoFar,End,Text):- get_char(S,C),atom_until(S,SoFar,C,End,Text). +atom_until(_,SoFar,C,End,Expr):- C ==End,!,must_det_ll((atomic_list_concat(SoFar,Expr))). +atom_until(S,SoFar,'\\',End,Expr):-get_char(S,C),!,atom_until2(S,SoFar,C,End,Expr). +atom_until(S,SoFar,C,End,Expr):- atom_until2(S,SoFar,C,End,Expr). +atom_until2(S,SoFar,C,End,Expr):- append(SoFar,[C],NSoFar),get_char(S,NC), + atom_until(S,NSoFar,NC,End,Expr). + +collect_list_until(AoS,S,End,List):- get_char(S,C), cont_list(AoS,C,End,S,List). +cont_list(_AoS,End,End,_,[]):- !. +cont_list( AoS,C,End,S,[F|List]):- read_sform3(AoS,[End],C,S,F),!,collect_list_until(AoS,S,End,List). + + + +in2_stream(N1,S1):- integer(N1),!,stream_property(S1,file_no(N1)),!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,alias(N1)),!. +in2_stream(N1,S1):- is_stream(N1),S1=N1,!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. +is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. + +%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). +read_metta(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta(In,Expr):- + read_metta1(In,Read1), + (Read1=='!' + -> (read_metta1(In,Read2), Expr=exec(Read2), nop(add_history_src(Expr))) + ; Expr = Read1),!. + +parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. +parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + +parse_sexpr_metta1(M,exec(O)):- string_concat('!',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(M,(O)):- string_concat('+',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + + +write_comment(_):- silent_loading,!. +write_comment(Cmt):- connlf,format(';;~w~n',[Cmt]). +do_metta_cmt(_,'$COMMENT'(Cmt,_,_)):- write_comment(Cmt),!. +do_metta_cmt(_,'$STRING'(Cmt)):- write_comment(Cmt),!. +do_metta_cmt(Self,[Cmt]):- !, do_metta_cmt(Self, Cmt),!. + + +mlog_sym('@'). + +%untyped_to_metta(I,exec(O)):- compound(I),I=exec(M),!,untyped_to_metta(M,O). +untyped_to_metta(I,O):- + must_det_ll(( + trly(mfix_vars1,I,M), + trly(cons_to_c,M,OM), + trly(cons_to_l,OM,O))). + + +trly(P2,A,B):- once(call(P2,A,M)),A\=@=M,!,trly(P2,M,B). +trly(_,A,A). + +mfix_vars1(I,O):- var(I),!,I=O. +mfix_vars1('$t','$VAR'('T')):-!. +mfix_vars1('$T','$VAR'('T')):-!. +%mfix_vars1(I,O):- I=='T',!,O='True'. +%mfix_vars1(I,O):- I=='F',!,O='False'. +%mfix_vars1(I,O):- is_i_nil(I),!,O=[]. +mfix_vars1(I,O):- I=='true',!,O='True'. +mfix_vars1(I,O):- I=='false',!,O='False'. +mfix_vars1('$STRING'(I),O):- option_value(strings,true),!, mfix_vars1(I,O). +mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),atom_chars(O,M),!. +%mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),name(O,M),!. +mfix_vars1([H|T],O):- H=='[', is_list(T), last(T,L),L==']',append(List,[L],T), !, O = ['[...]',List]. +mfix_vars1([H|T],O):- H=='{', is_list(T), last(T,L),L=='}',append(List,[L],T), !, O = ['{...}',List]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),O):- is_list(List),!, O = ['[...]',List]. +mfix_vars1(I,O):- I = ['[', X, ']'], nonvar(X), !, O = ['[...]',X]. +mfix_vars1(I,O):- I = ['{', X, '}'], nonvar(X), !, O = ['{...}',X]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),Res):- is_list(List),!, append(['['|List],[']'],Res),!. +mfix_vars1(I,O):- I==[Quote, S], Quote==quote,S==s,!, O=is. +mfix_vars1([K,H|T],Cmpd):- atom(K),mlog_sym(K),is_list(T),mfix_vars1([H|T],[HH|TT]),atom(HH),is_list(TT),!, + compound_name_arguments(Cmpd,HH,TT). +%mfix_vars1([H|T],[HH|TT]):- !, mfix_vars1(H,HH),mfix_vars1(T,TT). +mfix_vars1(List,ListO):- is_list(List),!,maplist(mfix_vars1,List,ListO). +mfix_vars1(I,O):- string(I),option_value('string-are-atoms',true),!,atom_string(O,I). + +mfix_vars1(I,O):- compound(I),!,compound_name_arguments(I,F,II),F\=='$VAR',maplist(mfix_vars1,II,OO),!,compound_name_arguments(O,F,OO). +mfix_vars1(I,O):- \+ atom(I),!,I=O. +mfix_vars1(I,'$VAR'(O)):- atom_concat('$',N,I),dvar_name(N,O),!. +mfix_vars1(I,I). + +no_cons_reduce. + +dvar_name(t,'T'):- !. +dvar_name(N,O):- atom(N),atom_number(N,Num),atom_concat('Num',Num,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- number(N),atom_concat('Num',N,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- \+ atom(N),!,format(atom(A),'~w',[N]),dvar_name(A,O). +dvar_name('','__'):-!. % "$" +dvar_name('_','_'):-!. % "$_" +dvar_name(N,O):- svar_fixvarname(N,O),!. +dvar_name(N,O):- must_det_ll((atom_chars(N,Lst),maplist(c2vn,Lst,NList),atomic_list_concat(NList,S),svar_fixvarname(S,O))),!. +c2vn(A,A):- char_type(A,prolog_identifier_continue),!. +c2vn(A,A):- char_type(A,prolog_var_start),!. +c2vn(A,AA):- char_code(A,C),atomic_list_concat(['_C',C,'_'],AA). + +cons_to_l(I,I):- no_cons_reduce,!. +cons_to_l(I,O):- var(I),!,O=I. +cons_to_l(I,O):- is_i_nil(I),!,O=[]. +cons_to_l(I,O):- I=='nil',!,O=[]. +cons_to_l(C,O):- \+ compound(C),!,O=C. +cons_to_l([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_l(H,HH),!,cons_to_l(T,TT). +cons_to_l(List,ListO):- is_list(List),!,maplist(cons_to_l,List,ListO). +cons_to_l(I,I). + +cons_to_c(I,I):- no_cons_reduce,!. +cons_to_c(I,O):- var(I),!,O=I. +cons_to_c(I,O):- is_i_nil(I),!,O=[]. +cons_to_c(I,O):- I=='nil',!,O=[]. +cons_to_c(C,O):- \+ compound(C),!,O=C. +cons_to_c([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_c(H,HH),!,cons_to_c(T,TT). +cons_to_c(I,O):- \+ is_list(I), compound_name_arguments(I,F,II),maplist(cons_to_c,II,OO),!,compound_name_arguments(O,F,OO). +cons_to_c(I,I). + + + +t_is_ttable(T):- var(T),!. +t_is_ttable(T):- is_i_nil(T),!. +t_is_ttable(T):- is_ftVar(T),!. +t_is_ttable([F|Args]):- F=='Cons',!,is_list(Args). +t_is_ttable([_|Args]):- !, \+ is_list(Args). +t_is_ttable(_). + +is_cons_f(Cons):- is_cf_nil(Cons,_). +is_cf_nil('Cons','NNNil'). +%is_cf_nil('::','nil'). + +is_i_nil(I):- + is_cf_nil('Cons',Nil), I == Nil. + +subst_vars(TermWDV, NewTerm):- + subst_vars(TermWDV, NewTerm, NamedVarsList), + maybe_set_var_names(NamedVarsList). + +subst_vars(TermWDV, NewTerm, NamedVarsList) :- + subst_vars(TermWDV, NewTerm, [], NamedVarsList). + +subst_vars(Term, Term, NamedVarsList, NamedVarsList) :- var(Term), !. +subst_vars([], [], NamedVarsList, NamedVarsList):- !. +subst_vars([TermWDV|RestWDV], [Term|Rest], Acc, NamedVarsList) :- !, + subst_vars(TermWDV, Term, Acc, IntermediateNamedVarsList), + subst_vars(RestWDV, Rest, IntermediateNamedVarsList, NamedVarsList). +subst_vars('$VAR'('_'), _, NamedVarsList, NamedVarsList) :- !. +subst_vars('$VAR'(VName), Var, Acc, NamedVarsList) :- nonvar(VName), svar_fixvarname(VName,Name), !, + (memberchk(Name=Var, Acc) -> NamedVarsList = Acc ; ( !, Var = _, NamedVarsList = [Name=Var|Acc])). +subst_vars(Term, Var, Acc, NamedVarsList) :- atom(Term),atom_concat('$',DName,Term), + dvar_name(DName,Name),!,subst_vars('$VAR'(Name), Var, Acc, NamedVarsList). + +subst_vars(TermWDV, NewTerm, Acc, NamedVarsList) :- + compound(TermWDV), !, + compound_name_arguments(TermWDV, Functor, ArgsWDV), + subst_vars(ArgsWDV, Args, Acc, NamedVarsList), + compound_name_arguments(NewTerm, Functor, Args). +subst_vars(Term, Term, NamedVarsList, NamedVarsList). + + + +:- nb_setval(variable_names,[]). + + +assert_preds(_Self,_Load,_Preds):- \+ preview_compiler,!. +assert_preds(_Self,Load,Preds):- + expand_to_hb(Preds,H,_B),functor(H,F,A), + color_g_mesg('#005288',( + ignore(( + \+ predicate_property(H,defined), + if_t(use_metta_compiler,catch_i(dynamic(F,A))), + format(' :- ~q.~n',[dynamic(F/A)]), + if_t(option_value('tabling',true), format(' :- ~q.~n',[table(F/A)])))), + if_t((preview_compiler), + format('~N~n ~@',[portray_clause(Preds)])), + if_t(use_metta_compiler,if_t(\+ predicate_property(H,static),add_assertion(Preds))))), + nop(metta_anew1(Load,Preds)). + + +%load_hook(_Load,_Hooked):- !. +load_hook(Load,Hooked):- ignore(( \+ ((forall(load_hook0(Load,Hooked),true))))),!. + +load_hook0(_,_):- \+ current_prolog_flag(metta_interp,ready),!. +load_hook0(_,_):- \+ preview_compiler,!. +load_hook0(Load,metta_defn(=,Self,H,B)):- + functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +/* +load_hook0(Load,get_metta_atom(Eq,Self,H)):- B = 'True', + H\=[':'|_], functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +*/ + +use_metta_compiler:- mnotrace(option_value('compile','full')), !. +preview_compiler:- \+ option_value('compile',false), !. +%preview_compiler:- use_metta_compiler,!. + + + +op_decl(match, [ 'Space', 'Atom', 'Atom'], '%Undefined%'). +op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('get-atoms', [ 'Space' ], 'Atom'). + +op_decl('car-atom', [ 'Expression' ], 'Atom'). +op_decl('cdr-atom', [ 'Expression' ], 'Expression'). + +op_decl(let, [ 'Atom', '%Undefined%', 'Atom' ], 'Atom'). +op_decl('let*', [ 'Expression', 'Atom' ], 'Atom'). + +op_decl(and, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(or, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(case, [ 'Expression', 'Atom' ], 'Atom'). +/* +op_decl(apply, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl(chain, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl('filter-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl('foldl-atom', [ 'Expression', 'Atom', 'Variable', 'Variable', 'Atom' ], 'Atom'). +op_decl('map-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl(quote, [ 'Atom' ], 'Atom'). +op_decl('if-decons', [ 'Atom', 'Variable', 'Variable', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-empty', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-error', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-non-empty-expression', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-not-reducible', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl(return, [ 'Atom' ], 'ReturnType'). +op_decl('return-on-error', [ 'Atom', 'Atom'], 'Atom'). +op_decl(unquote, [ '%Undefined%'], '%Undefined%'). +op_decl(cons, [ 'Atom', 'Atom' ], 'Atom'). +op_decl(decons, [ 'Atom' ], 'Atom'). +op_decl(empty, [], '%Undefined%'). +op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). +op_decl(eval, [ 'Atom' ], 'Atom'). +op_decl(function, [ 'Atom' ], 'Atom'). +op_decl(id, [ 'Atom' ], 'Atom'). +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). +*/ +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). +op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). +op_decl('%', [ 'Number', 'Number' ], 'Number'). +op_decl('*', [ 'Number', 'Number' ], 'Number'). +op_decl('-', [ 'Number', 'Number' ], 'Number'). +op_decl('+', [ 'Number', 'Number' ], 'Number'). +op_decl(combine, [ X, X], X). + +op_decl('bind!', ['Symbol','%Undefined%'], 'EmptyType'). +op_decl('import!', ['Space','Atom'], 'EmptyType'). +op_decl('get-type', ['Atom'], 'Type'). + +type_decl('Any'). +type_decl('Atom'). +type_decl('Bool'). +type_decl('ErrorType'). +type_decl('Expression'). +type_decl('Number'). +type_decl('ReturnType'). +type_decl('Space'). +type_decl('Symbol'). +type_decl('MemoizedState'). +type_decl('Type'). +type_decl('%Undefined%'). +type_decl('Variable'). + +:- dynamic(get_metta_atom/2). +:- dynamic(asserted_metta_atom/2). +metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). +metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). + +%get_metta_atom(Eq,KB, [F|List]):- KB='&flybase',fb_pred(F, Len), length(List,Len),apply(F,List). + + +get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). + +get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred(F, Len), length([A|List],Len),apply(F,[A|List]). +get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). +get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). +get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). +get_metta_atom_from(KB,Atom):- if_or_else(asserted_metta_atom( KB,Atom),asserted_metta_atom_fallback( KB,Atom)). + +asserted_metta_atom_fallback( KB,Atom):- fail, is_list(KB),!, member(Atom,KB). +%asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) + +%metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. +metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). +metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). +%typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). + + +%maybe_xform(metta_atom(KB,[F,A|List]),metta_atom(KB,F,A,List)):- is_list(List),!. +maybe_xform(metta_defn(Eq,KB,Head,Body),metta_atom(KB,[Eq,Head,Body])). +maybe_xform(metta_type(KB,Head,Body),metta_atom(KB,[':',Head,Body])). +maybe_xform(metta_atom(KB,HeadBody),asserted_metta_atom(KB,HeadBody)). +maybe_xform(_OBO,_XForm):- !, fail. + +metta_anew1(Load,_OBO):- var(Load),trace,!. +metta_anew1(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew1(Mode,OBO). +metta_anew1(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew1(Load,XForm). +metta_anew1(load,OBO):- OBO= metta_atom(Space,Atom),!,'add-atom'(Space, Atom). +metta_anew1(unload,OBO):- OBO= metta_atom(Space,Atom),!,'remove-atom'(Space, Atom). + +metta_anew1(load,OBO):- !, must_det_ll((load_hook(load,OBO), + subst_vars(OBO,Cl),show_failure(assertz_if_new(Cl)))). %to_metta(Cl). +metta_anew1(unload,OBO):- subst_vars(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + +metta_anew2(Load,_OBO):- var(Load),trace,!. +metta_anew2(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew2(Load,XForm). +metta_anew2(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew2(Mode,OBO). +metta_anew2(load,OBO):- must_det_ll((load_hook(load,OBO),subst_vars_not_last(OBO,Cl),assertz_if_new(Cl))). %to_metta(Cl). +metta_anew2(unload,OBO):- subst_vars_not_last(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + + +metta_anew(Load,Src,OBO):- maybe_xform(OBO,XForm),!,metta_anew(Load,Src,XForm). +metta_anew(Ch, Src, OBO):- metta_interp_mode(Ch,Mode), !, metta_anew(Mode,Src,OBO). +metta_anew(Load,_Src,OBO):- silent_loading,!,metta_anew1(Load,OBO). +metta_anew(Load,Src,OBO):- format('~N'), color_g_mesg('#0f0f0f',(write(' ; Action: '),writeq(Load=OBO))), + color_g_mesg('#ffa500', write_src(Src)), + metta_anew1(Load,OBO),format('~n'). + +subst_vars_not_last(A,B):- + functor(A,_F,N),arg(N,A,E), + subst_vars(A,B), + nb_setarg(N,B,E),!. + +con_write(W):-check_silent_loading, write(W). +con_writeq(W):-check_silent_loading, writeq(W). +writeqln(Q):- check_silent_loading,write(' '),con_writeq(Q),connl. + +connlf:- check_silent_loading, format('~N'). +connl:- check_silent_loading,nl. +% check_silent_loading:- silent_loading,!,trace,break. +check_silent_loading. +silent_loading:- is_converting,!. +silent_loading:- \+ option_value('trace-on-load',true), !. + + + +uncompound(OBO,Src):- \+ compound(OBO),!, Src = OBO. +uncompound('$VAR'(OBO),'$VAR'(OBO)):-!. +uncompound(IsList,Src):- is_list(IsList),!,maplist(uncompound,IsList,Src). +uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). +uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). + +:- dynamic(all_data_to/1). +all_data_once:- all_data_to(_),!. +all_data_once:- open('whole_flybase.pl',write,Out,[alias(all_data),encoding(utf8),lock(write)]), + assert(all_data_to(Out)), + writeln(Out,':- encoding(utf8).'), + writeln(Out,':- style_check(-discontiguous).'), + flush_output(Out), + all_data_preds. +all_data_preds:- + all_data_to(Out), + with_output_to(Out, +((listing_c(table_n_type/3), + listing_c(load_state/2), + listing_c(is_loaded_from_file_count/2), + listing_c(fb_pred/2), + listing_c(fb_arg_type/1), + listing_c(fb_arg_table_n/3), + listing_c(fb_arg/1), + listing_c(done_reading/1)))),!. +all_data_done:- + all_data_preds, + ignore(retract(all_data_to(Out))), + close(Out). + +listing_c(F/A):- + format('~N~q.~n',[:-multifile(F/A)]), + format('~q.~n',[:-dynamic(F/A)]), + functor(P,F,A), + catch(forall(P,format('~q.~n',[P])),E, fbug(caused(F/A,E))). + + +:- dynamic(all_metta_to/1). +all_metta_once:- all_metta_to(_),!. +all_metta_once:- open('whole_flybase.metta',write,Out,[alias(all_metta),encoding(utf8),lock(write)]), + assert(all_metta_to(Out)), + all_metta_preds. +all_metta_preds:-!. +all_metta_done:- + all_metta_preds, + retract(all_metta_to(Out)), + close(Out). + +real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert(OBO):- + ignore(real_assert1(OBO)), + real_assert2(OBO). + +%real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert1(OBO):- all_metta_to(Out),!,with_output_to(Out,print_src(OBO)). +real_assert2(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). +real_assert2(OBO):- call(OBO),!. +real_assert2(OBO):- assert(OBO). + +print_src(OBO):- format('~N'), uncompound(OBO,Src),!, with_indents(false,write_src(Src)). + +assert_to_metta(_):- reached_file_max,!. +assert_to_metta(OBO):- + OBO=..[Fn|DataL], + into_datum(Fn, DataL, Data), + functor(Data,Fn,A),decl_fb_pred(Fn,A), + real_assert(Data),!, + incr_file_count(_). + +assert_to_metta(OBO):- + ignore(( A>=2,A<700, + OBO=..[Fn|Cols], + must_det_ll(( + make_assertion4(Fn,Cols,Data,OldData), + functor(Data,FF,AA), + decl_fb_pred(FF,AA), + ((fail,call(Data))->true;( + must_det_ll(( + real_assert(Data), + incr_file_count(_), + ignore((((should_show_data(X), + ignore((fail,OldData\==Data,write('; oldData '),write_src(OldData),format(' ; ~w ~n',[X]))), + write_src(Data),format(' ; ~w ~n',[X]))))), + ignore(( + fail, option_value(output_stream,OutputStream), + is_stream(OutputStream), + should_show_data(X1),X1<1000,must_det_ll((display(OutputStream,Data),writeln(OutputStream,'.'))))))))))))),!. + +assert_MeTTa(OBO):- !, assert_to_metta(OBO). +%assert_MeTTa(OBO):- !, assert_to_metta(OBO),!,heartbeat. +/* +assert_MeTTa(Data):- !, heartbeat, functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + incr_file_count(_), + ignore((((should_show_data(X), + write(newData(X)),write(=),write_src(Data))))), + assert(Data),!. +*/ + + +%:- dynamic((metta_type/3,metta_defn/3,get_metta_atom/2)). + +into_space(Self,'&self',Self):-!. +into_space(_,Other,Other):-!. + + +into_space(Self,Myself,SelfO):- into_space(30,Self,Myself,SelfO). + +into_space(_Dpth,Self,Myself,Self):-Myself=='&self',!. +into_space(_Dpth,Self,None,Self):- 'None' == None,!. +into_space(Depth,Self,Other,Result):- eval_H(Depth,Self,Other,Result). +into_name(_,Other,Other). + +%eval_f_args(Depth,Self,F,ARGS,[F|EARGS]):- maplist(eval_H(Depth,Self),ARGS,EARGS). + + +combine_result(TF,R2,R2):- TF == [], !. +combine_result(TF,_,TF):-!. + + +do_metta1_e(_Self,_,exec(Exec)):- !,write_exec(Exec),!. +do_metta1_e(_Self,_,[=,A,B]):- !, with_concepts(false, + (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. +do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. + +write_exec(Exec):- mnotrace(write_exec0(Exec)). +%write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). +write_exec0(Exec):- + wots(S,write_src(exec(Exec))), + nb_setval(exec_src,Exec), + ignore((mnotrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). + + + +asserted_do_metta(Space,Ch,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta(Space,Mode,Src). + +asserted_do_metta(Space,Load,Src):- Load==exec,!,do_metta_exec(python,Space,Src,_Out). +asserted_do_metta(Space,Load,Src):- asserted_do_metta2(Space,Load,Src,Src). + +asserted_do_metta2(Space,Ch,Info,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta2(Space,Mode,Info,Src). +asserted_do_metta2(Self,Load,[TypeOp,Fn,Type], Src):- TypeOp = ':', \+ is_list(Type),!, + must_det_ll(( + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,Type]))))),!. + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len),LenM1 is Len - 1, last_element(TypeDecL,LE), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecL]))), + metta_anew1(Load,metta_arity(Self,Fn,LenM1)), + arg_types(TypeDecL,[],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)),!, + metta_anew1(Load,metta_last(Self,Fn,LE)))). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL,RetType], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len), + append(TypeDecL,[RetType],TypeDecLRet), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecLRet]))), + metta_anew1(Load,metta_arity(Self,Fn,Len)), + arg_types(TypeDecL,[RetType],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)), + metta_anew1(Load,metta_return(Self,Fn,RetType)))),!. + +/*do_metta(File,Self,Load,PredDecl, Src):-fail, + metta_anew(Load,Src,metta_atom(Self,PredDecl)), + ignore((PredDecl=['=',Head,Body], metta_anew(Load,Src,metta_defn(Eq,Self,Head,Body)))), + ignore((Body == 'True',!,do_metta(File,Self,Load,Head))), + nop((fn_append(Head,X,Head), fn_append(PredDecl,X,Body), + metta_anew((Head:- Body)))),!.*/ + +asserted_do_metta2(Self,Load,[EQ,Head,Result], Src):- EQ=='=', !, + must_det_ll(( + discover_head(Self,Load,Head), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_defn(EQ,Self,Head,Result))), + discover_body(Self,Load,Result))). + +asserted_do_metta2(Self,Load,PredDecl, Src):- + ignore(discover_head(Self,Load,PredDecl)), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,PredDecl))). + + +always_exec(exec(W)):- !, is_list(W), always_exec(W). +always_exec(Comp):- compound(Comp),compound_name_arity(Comp,Name,N),atom_concat('eval',_,Name),Nm1 is N-1, arg(Nm1,Comp,TA),!,always_exec(TA). +always_exec(List):- \+ is_list(List),!,fail. +always_exec([Var|_]):- \+ atom(Var),!,fail. +always_exec(['extend-py!'|_]):- !, fail. +always_exec([H|_]):- atom_concat(_,'!',H),!. %pragma!/print!/transfer!/include! etc +always_exec(['assertEqualToResult'|_]):-!,fail. +always_exec(['assertEqual'|_]):-!,fail. +always_exec(_):-!,fail. % everything else + +if_t(A,B,C):- trace,if_t((A,B),C). + + +check_answers_for(TermV,Ans):- (string(TermV);var(Ans);var(TermV)),!,fail. +check_answers_for(TermV,_):- sformat(S,'~q',[TermV]),atom_contains(S,"[assert"),!,fail. +check_answers_for(_,Ans):- contains_var('BadType',Ans),!,fail. +check_answers_for(TermV,_):- inside_assert(TermV,BaseEval), always_exec(BaseEval),!,fail. + +%check_answers_for([TermV],Ans):- !, check_answers_for(TermV,Ans). +%check_answers_for(TermV,[Ans]):- !, check_answers_for(TermV,Ans). +check_answers_for(_,_). + +got_exec_result2(Val,Nth,Ans):- is_list(Ans), exclude(==(','),Ans,Ans2), Ans\==Ans2,!, + got_exec_result2(Val,Nth,Ans2). +got_exec_result2(Val,Nth,Ans):- + must_det_ll(( + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + if_t( ( \+ is_unit_test_exec(Exec)), + ((equal_enough(Val,Ans) + -> write_pass_fail_result_now(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result_now(TestName,exec,Exec,'FAIL',Ans,Val)))))). + +write_pass_fail_result_now(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + (PASS_FAIL=='PASS'->flag(loonit_success, X, X+1);flag(loonit_failure, X, X+1)), + (PASS_FAIL=='PASS'->Color=cyan;Color=red), + color_g_mesg(Color,write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val)),!,nl, + nl,writeln('--------------------------------------------------------------------------'),!. + +write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,write_mobj(exec,[(['assertEqualToResult',Exec,Ans])]), + nl,write_src('!'(['assertEqual',Val,Ans])), + write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val). + +is_unit_test_exec(Exec):- sformat(S,'~w',[Exec]),sub_atom(S,_,_,_,'assert'). +is_unit_test_exec(Exec):- sformat(S,'~q',[Exec]),sub_atom(S,_,_,_,"!',"). + +return_empty('Empty'). +return_empty(_,Empty):- return_empty(Empty). + +convert_tax(_How,Self,Tax,Expr,NewHow):- + metta_interp_mode(Ch,Mode), + string_concat(Ch,TaxM,Tax),!, + normalize_space(string(NewTax),TaxM), + convert_tax(Mode,Self,NewTax,Expr,NewHow). +convert_tax(How,_Self,Tax,Expr,How):- + %parse_sexpr_metta(Tax,Expr). + normalize_space(string(NewTax),Tax), + read_metta(NewTax,Expr). + +:- if( \+ current_predicate(mnotrace/1) ). + mnotrace(G):- once(G). +:- endif. + +metta_interp_mode('+',load). +metta_interp_mode('-',unload). +metta_interp_mode('!',exec). +metta_interp_mode('?',call). +metta_interp_mode('^',load_like_file). + + +call_sexpr(Mode,Self,Tax,_S,Out):- + metta_interp_mode(Mode,How), + (atom(Tax);string(Tax)), + normalize_space(string(TaxM),Tax), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + show_call(do_metta(python,NewHow,Self,Expr,Out)). + + +do_metta(_File,_Load,_Self,In,Out):- var(In),!,In=Out. +do_metta(_From,_Mode,_Self,end_of_file,'Empty'):- !. %, halt(7), writeln('\n\n% To restart, use: ?- repl.'). +do_metta(_File,_Load,_Self,Cmt,Out):- Cmt==[],!, Out=[]. + +do_metta(From,Load,Self,'$COMMENT'(Expr,_,_),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,Load,Self,'$STRING'(Expr),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,[Expr],Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,Cmt,Out):- write_comment(Cmt), !, + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog only: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))), + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))),!. + +do_metta(From,How,Self,Src,Out):- string(Src),!, + normalize_space(string(TaxM),Src), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + do_metta(From,NewHow,Self,Expr,Out). + +do_metta(From,_,Self,exec(Expr),Out):- !, do_metta(From,exec,Self,Expr,Out). +do_metta(From,_,Self, call(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,_,Self, ':-'(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,call,Self,TermV,FOut):- !, + call_for_term_variables(TermV,Term,NamedVarsList,X), must_be(nonvar,Term), + copy_term(NamedVarsList,Was), + Output = NamedVarsList, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). +do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). + +do_metta(file(Filename),exec,Self,TermV,Out):- + mnotrace(( + inc_exec_num(Filename), + must_det_ll(( + get_exec_num(Filename,Nth), + Nth>0)), + file_answers(Filename, Nth, Ans), + check_answers_for(TermV,Ans),!, + must_det_ll(( + color_g_mesg_ok('#ffa500', + (writeln(';; In file as: '), + color_g_mesg([bold,fg('#FFEE58')], write_src(exec(TermV))), + write(';; To unit test case:'))))),!, + do_metta_exec(file(Filename),Self,['assertEqualToResult',TermV,Ans],Out))). + +do_metta(From,exec,Self,TermV,Out):- !, do_metta_exec(From,Self,TermV,Out). + +do_metta_exec(From,Self,TermV,FOut):- + Output = X, + mnotrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)),!, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). + + +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + term_variables(TermV, AllVars), call_for_term_variables4v(TermV,AllVars,Term,NamedVarsList,X),!, + must_be(callable,Term). +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + get_term_variables(TermV, DCAllVars, Singletons, NonSingletons), + call_for_term_variables5(TermV, DCAllVars, Singletons, NonSingletons, Term,NamedVarsList,X),!, + must_be(callable,Term). + +into_metta_callable(_Self,TermV,Term,X,NamedVarsList,Was):- use_metta_compiler, !, + must_det_ll(((( + + % ignore(Res = '$VAR'('ExecRes')), + RealRes = Res, + compile_for_exec(Res,TermV,ExecGoal),!, + subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), + copy_term(NamedVarsList,Was), + term_variables(Term,Vars), + mnotrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), + %nl,writeq(Term),nl, + ((\+ \+ + ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), + %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(Term,NamedVarsList,Vars)), + nl)))), + nop(maplist(verbose_unify,Vars)), + %NamedVarsList=[_=RealRealRes|_], + var(RealRes), X = RealRes)))),!. + + +into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, + option_else('stack-max',StackMax,100), + CALL = eval_H(StackMax,Self,Term,X), + mnotrace(( must_det_ll(( + if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), + subst_vars(TermV,Term,NamedVarsList), + copy_term(NamedVarsList,Was) + %term_variables(Term,Vars), + %nl,writeq(Term),nl, + %skip((\+ \+ + %((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(TermV,Term,NamedVarsList,Vars)),nl)))), + %nop(maplist(verbose_unify,Vars)))))),!. + )))),!. + +eval_H(StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). + +/* +eval_H(StackMax,Self,Term,X). + +eval_H(StackMax,Self,Term,X):- + Time = 90.0, + ((always_exec(Term)) -> + if_or_else(t1('=',_,StackMax,Self,Term,X), + (t2('=',_,StackMax,Self,Term,X))); + call_max_time(t1('=',_,StackMax,Self,Term,X), Time, + (t2('=',_,StackMax,Self,Term,X)))). + +eval_H(Term,X):- + current_self(Self), StackMax = 100, + if_or_else((t1('=',_,StackMax,Self,Term,X),X\==Term),(t2('=',_,StackMax,Self,Term,X),nop(X\==Term))). + + +t1('=',_,StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). +t2('=',_,StackMax,Self,Term,X):- fail, subst_args('=',_,StackMax,Self,Term,X). +*/ + +%eval_H(Term,X):- if_or_else((subst_args(Term,X),X\==Term),(eval_args(Term,Y),Y\==Term)). + +print_goals(TermV):- write_src(TermV). + + +if_or_else(Goal,Else):- call(Goal)*->true;call(Else). + +interacting:- tracing,!. +interacting:- current_prolog_flag(debug,true),!. +interacting:- option_value(interactive,true),!. +interacting:- option_value(prolog,true),!. + +% call_max_time(+Goal, +MaxTime, +Else) +call_max_time(Goal,_MaxTime, Else) :- interacting,!, if_or_else(Goal,Else). +call_max_time(Goal,_MaxTime, Else) :- !, if_or_else(Goal,Else). +call_max_time(Goal, MaxTime, Else) :- + catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). + + +catch_err(G,E,C):- catch(G,E,(mnotrace(if_t(atom(E),throw(E))),C)). + +%repl:- option_value('repl',prolog),!,prolog. +%:- ensure_loaded(metta_toplevel). + +%:- discontiguous do_metta_exec/3. + +%repl:- setup_call_cleanup(flag(repl_level,Was,Was+1),repl0, + % (flag(repl_level,_,Was),(Was==0 -> maybe_halt(7) ; true))). + +repl:- catch(repl2,end_of_input,true). + +repl1:- + with_option('doing_repl',true, + with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). +repl2:- + %mnotrace((current_input(In),nop(catch(load_history,_,true)))), + % ignore(install_readline(In)), + repeat, + set_prolog_flag(gc,false), + %with_option(not_a_reload,true,make), + ignore(catch(once(repl3),restart_reading,true)), + set_prolog_flag(gc,true),fail. +repl3:- + mnotrace(( flag(eval_num,_,0), + current_self(Self), + current_read_mode(Mode), + %ignore(shell('stty sane ; stty echo')), + %current_input(In), + format(atom(P),'metta ~w ~w> ',[Self, Mode]))), + setup_call_cleanup( + mnotrace(prompt(Was,P)), + mnotrace((ttyflush,repl_read(Expr),ttyflush)), + mnotrace(prompt(_,Was))), + fbug(repl_read(Expr)), + mnotrace(if_t(Expr==end_of_file,throw(end_of_input))), + %ignore(shell('stty sane ; stty echo')), + mnotrace(ignore(check_has_directive(Expr))), + once(do_metta(repl_true,Mode,Self,Expr,_)). + +check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. +check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). +check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,mnotrace(throw(restart_reading)). +check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). +check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). +check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(read_mode,ModeChar). +check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),check_has_directive(NEV,true). +check_has_directive(_). +set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). +set_directive(N,V):- N==mode,!,set_directive(read_mode,V). +set_directive(N,V):- show_call(set_option_value(N,V)),!,mnotrace(throw(restart_reading)). + +read_pending_white_codes(In):- + read_pending_codes(In,[10],[]),!. +read_pending_white_codes(_). + +call_for_term_variables4v(Term,[] ,as_tf(Term,TF),NamedVarsList,TF):- get_global_varnames(NamedVarsList),!. +call_for_term_variables4v(Term,[X] , Term, NamedVarsList,X):- get_global_varnames(NamedVarsList). + + +not_in_eq(List, Element) :- + member(V, List), V == Element. + +get_term_variables(Term, DontCaresN, CSingletonsN, CNonSingletonsN) :- + term_variables(Term, AllVars), + get_global_varnames(VNs), + writeqln(term_variables(Term, AllVars)=VNs), + term_singletons(Term, Singletons), + term_dont_cares(Term, DontCares), + include(not_in_eq(Singletons), AllVars, NonSingletons), + include(not_in_eq(DontCares), NonSingletons, CNonSingletons), + include(not_in_eq(DontCares), Singletons, CSingletons), + maplist(into_named_vars,[DontCares, CSingletons, CNonSingletons], + [DontCaresN, CSingletonsN, CNonSingletonsN]), + writeqln([DontCaresN, CSingletonsN, CNonSingletonsN]). + +term_dont_cares(Term, DontCares):- + term_variables(Term, AllVars), + get_global_varnames(VNs), + include(has_sub_var(AllVars),VNs,HVNs), + include(underscore_vars,HVNs,DontCareNs), + maplist(arg(2),DontCareNs,DontCares). + +into_named_vars(Vars,L):- is_list(Vars), !, maplist(name_for_var_vn,Vars,L). +into_named_vars(Vars,L):- term_variables(Vars,VVs),!,into_named_vars(VVs,L). + +has_sub_var(AllVars,_=V):- sub_var(V,AllVars). +underscore_vars(V):- var(V),!,name_for_var(V,N),!,underscore_vars(N). +underscore_vars(N=_):- !, atomic(N),!,underscore_vars(N). +underscore_vars(N):- atomic(N),!,atom_concat('_',_,N). + +get_global_varnames(VNs):- nb_current('variable_names',VNs),VNs\==[],!. +get_global_varnames(VNs):- prolog_load_context(variable_names,VNs),!. +maybe_set_var_names(List):- List==[],!. +maybe_set_var_names(List):- % fbug(maybe_set_var_names(List)), + is_list(List),!,nb_linkval(variable_names,List). +maybe_set_var_names(_). + +name_for_var_vn(V,N=V):- name_for_var(V,N). + +name_for_var(V,N):- var(V),!,get_global_varnames(VNs),member(N=VV,VNs),VV==V,!. +name_for_var(N=_,N):- !. +name_for_var(V,N):- term_to_atom(V,N),!. + + + %call_for_term_variables5(Term,[],as_tf(Term,TF),[],TF):- atom(Term),!. +call_for_term_variables5(Term,[],[],[],as_tf(Term,TF),[],TF):- ground(Term),!. +call_for_term_variables5(Term,DC,[],[],call_nth(Term,TF),DC,TF):- ground(Term),!. +call_for_term_variables5(Term,_,[],[_=Var],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,[_=Var],[],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,Vars,[_=Var],Term,Vars,Var). +call_for_term_variables5(Term,_,[_=Var],Vars,Term,Vars,Var). +call_for_term_variables5(Term,_,SVars,Vars,call_nth(Term,Count),[Vars,SVars],Count). + + + +is_interactive(From):- mnotrace(is_interactive0(From)). +is_interactive0(From):- From==false,!,fail. +is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). +is_interactive0(From):- From = repl_true,!. +is_interactive0(From):- From = true,!. + + +:- set_prolog_flag(history, 20). + +inside_assert(Var,Var):- \+ compound(Var),!. +inside_assert([H,IA,_],IA):- atom(H),atom_concat('assert',_,H),!. +inside_assert(Conz,Conz):- is_conz(Conz),!. +inside_assert(exec(I),O):- !, inside_assert(I,O). +inside_assert(Eval,O):- functor(Eval,eval_H,A), A1 is A-1, arg(A1,Eval,I),!, inside_assert(I,O). +inside_assert(eval_H(A,B,I,C),eval_H(A,B,O,C)):- !, inside_assert(I,O). +inside_assert(eval_H(I,C),eval_H(O,C)):- !, inside_assert(I,O). +inside_assert(call(I),O):- !, inside_assert(I,O). +inside_assert( ?-(I), O):- !, inside_assert(I,O). +inside_assert( :-(I), O):- !, inside_assert(I,O). +inside_assert(Var,Var). + +:- nb_setval(self_space, '&self'). +current_self(Self):- ((nb_current(self_space,Self),Self\==[])->true;Self='&self'). +:- nb_setval(read_mode, '+'). +current_read_mode(Mode):- ((nb_current(read_mode,Mode),Mode\==[])->true;Mode='+'). + + + +eval(all(Form)):- nonvar(Form), !, forall(eval(Form,_),true). +eval(Form):- + current_self(Self), + do_metta(true,exec,Self,Form,_Out). + +eval(Self,Form):- + current_self(SelfS),SelfS==Self,!, + do_metta(true,exec,Self,Form,_Out). +eval(Form,Out):- + current_self(Self), + eval(Self,Form,Out). + + +eval(Self,Form,Out):- + do_metta(prolog,exec,Self,Form,Out). + +name_vars(X='$VAR'(X)). + +interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + mnotrace(( + Result = res(FOut), + inside_assert(Term,BaseEval), + option_else(answer,Leap,each), + Control = contrl(Leap), + Skipping = _, + % Initialize Control as a compound term with 'each' as its argument. + %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), + (((From = file(_Filename), option_value('exec',skip), \+ always_exec(BaseEval))) + -> (GG = (skip(Term),deterministic(Complete)), + %Output = + %FOut = "Skipped", + Skipping = 1,!, + %color_g_mesg('#da70d6', (write('% SKIPPING: '), writeq(eval_H(100,Self,BaseEval,X)),writeln('.'))), + % color_g_mesg('#fa90f6', (writeln('; SKIPPING'), with_indents(true,write_src(exec(BaseEval))))), + % if_t(is_list(BaseEval),add_history_src(exec(TermV))), + true + ) + ; GG = %$ locally(set_prolog_flag(gc,false), + ( + (( (Term),deterministic(Complete), nb_setarg(1,Result,Output)))), + !, % metta_toplevel + flag(result_num,_,0), + PL=eval(Self,BaseEval,X), + ( % with_indents(true, + \+ \+ ( + maplist(name_vars,NamedVarsList), + name_vars('OUT'=X), + % add_history_src(exec(BaseEval)), + write_exec(TermV), + if_t(Skipping==1,writeln(' ; SKIPPING')), + if_t(TermV\=BaseEval,color_g_mesg('#fa90f6', (write('; '), with_indents(false,write_src(exec(BaseEval)))))), + if_t((is_interactive(From);Skipping==1), + ( + if_t( \+ option_value(doing_repl,true), + if_t( \+ option_value(repl,true), + if_t( option_value(prolog,true), add_history_pl(PL)))), + if_t(option_value(repl,true), add_history_src(exec(BaseEval))))), + + prolog_only((color_g_mesg('#da70d6', (write('% DEBUG: '), writeq(PL),writeln('.'))))), + true))))), + + (forall_interactive( + From, WasInteractive,Complete,may_rtrace(timed_call(GG,Seconds)), + ((Complete==true->!;true), + %repeat, + set_option_value(interactive,WasInteractive), + nb_setarg(1,Result,Output), + read_pending_codes(user_input,_,[]), + flag(result_num,R,R+1), + flag(result_num,ResNum,ResNum), + (((ResNum==1,Complete==true)->(format('~NDeterministic: ', []), !); %or Nondet + ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); + format('~NNDet Result(~w): ',[ResNum])))), + color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), + color_g_mesg(green, + ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))), + ( give_time('Execution',Seconds), + (Complete\==true, WasInteractive, Control \== contrl(leap))-> + (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, + (C=='b' -> (once(repl),fail) ; + (C=='m' -> make ; + (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; + (C=='T' -> (set_debug(eval,true)); + (C==';' -> true ; + (C==esc('[A',[27,91,65]) -> nb_setarg(1, Control, leap) ; + (C=='l' -> nb_setarg(1, Control, leap) ; + (((C=='\n');(C=='\r')) -> (!,fail); + (!,fail))))))))))); + (Complete\==true, \+ WasInteractive, Control == contrl(leap)) -> true ; + (((Complete==true ->! ; true))))) + *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) + ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,true);true))), + ignore(Result = res(FOut)). + + +get_single_char_key(O):- get_single_char(C),get_single_char_key(C,O). +get_single_char_key(27,esc(A,[27|O])):- !,read_pending_codes(user_input,O,[]),name(A,O). +get_single_char_key(C,A):- name(A,[C]). + +forall_interactive(file(_),false,Complete,Goal,After):- !, Goal, (Complete==true -> ( After,!) ; ( \+ After )). +forall_interactive(prolog,false,Complete,Goal,After):- !, Goal, (Complete == true -> ! ; true), quietly(After). +forall_interactive(From,WasInteractive,Complete,Goal,After):- + (is_interactive(From) -> WasInteractive = true ; WasInteractive = false),!, + Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). + +print_var(Name=Var) :- print_var(Name,Var). +print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. + +% Entry point for the user to call with tracing enabled +toplevel_goal(Goal) :- + term_variables(Goal,Vars), + trace_goal(Vars, Goal, trace_off). + +% Entry point for the user to call with tracing enabled +trace_goal(Goal) :- + trace_goal(Goal, trace_on). + +% Handle tracing +trace_goal(Goal, Tracing) :- + (Tracing == trace_on -> writeln('Entering goal:'), writeln(Goal) ; true), + term_variables(Goal, Variables), + ( call(Goal) -> + (Tracing == trace_on -> writeln('Goal succeeded with:'), writeln(Variables) ; true), + interact(Variables, Goal, Tracing) + ; (Tracing == trace_on -> writeln('Goal failed.') ; true), + false + ). + +% Interaction with the user +interact(Variables, Goal, Tracing) :- + call(Goal),write('Solution: '), write_src(Variables), + write(' [;next]?'), + get_single_char(Code), + (command(Code, Command) -> + handle_command(Command, Variables, Goal, Tracing) + ; writeln('Unknown command.'), interact(Variables, Goal, Tracing) % handle unknown commands + ). + +install_readline(Input):- + add_history_string("!(pfb3)"), + add_history_string("!(load-flybase-full)"), + add_history_string("!(obo-alt-id $X BS:00063)"), + add_history_string("!(and (total-rows $T TR$) (unique-values $T2 $Col $TR))"), + ignore(editline:el_wrap), + ignore(editline:add_prolog_commands(Input)). + + + + +% Command descriptions +command(59, retry). % ';' to retry +command(115, skip). % 's' to skip to the next solution +command(108, leap). % 'l' to leap (end the debugging session) +command(103, goals). % 'g' to show current goals +command(102, fail). % 'f' to force fail +command(116, trace). % 't' to toggle tracing +command(117, up). % 'u' to continue without interruption +command(101, exit). % 'e' to exit the debugger +command(97, abort). % 'a' to abort +command(98, break). % 'b' to set a breakpoint +command(99, creep). % 'c' to proceed step by step +command(104, help). % 'h' for help +command(65, alternatives). % 'A' for alternatives +command(109, make). % 'm' for make (recompile) +command(67, compile). % 'C' for Compile (compile new executable) + +:- style_check(-singleton). + +% Command implementations +handle_command(make, Variables, Goal, Tracing) :- + writeln('Recompiling...'), + % Insert the logic to recompile the code. + % This might involve calling `make/0` or similar. + make, % This is assuming your Prolog environment has a `make` predicate. + fail. % interact(Variables, Goal, Tracing). + +handle_command(compile, Variables, Goal, Tracing) :- + writeln('Compiling new executable...'), + % Insert the logic to compile a new executable. + % This will depend on how you compile Prolog programs in your environment. + % For example, you might use `qsave_program/2` to create an executable. + % Pseudocode: compile_executable(ExecutableName) + fail. % interact(Variables, Goal, Tracing). +handle_command(alternatives, Variables, Goal, Tracing) :- + writeln('Showing alternatives...'), + % Here you would include the logic for displaying the alternatives. + % For example, showing other clauses that could be tried for the current goal. + writeln('Alternatives for current goal:'), + writeln(Goal), + % Pseudocode: find_alternatives(Goal, Alternatives) + % Pseudocode: print_alternatives(Alternatives) + fail. % interact(Variables, Goal, Tracing). +% Extend the command handling with the 'help' command implementation +handle_command(help, Variables, Goal, Tracing) :- + print_help, + fail. % interact(Variables, Goal, Tracing). +handle_command(abort, _, _, _) :- + writeln('Aborting...'), abort. +handle_command(break, Variables, Goal, Tracing) :- + writeln('Breakpoint set.'), % Here you should define what 'setting a breakpoint' means in your context + fail. % interact(Variables, Goal, Tracing). +handle_command(creep, Variables, Goal, Tracing) :- + writeln('Creeping...'), % Here you should define how to 'creep' (step by step execution) through the code + trace. % interact(Variables, Goal, Tracing). +handle_command(retry, Variables, Goal, Tracing) :- + writeln('Continuing...'),!. + %trace_goal(Goal, Tracing). +handle_command(skip, Variables, Goal, Tracing) :- + writeln('Skipping...'). +handle_command(leap, _, _, _) :- + writeln('Leaping...'), nontrace. % Cut to ensure we stop the debugger +handle_command(goals, Variables, Goal, Tracing) :- + writeln('Current goal:'), writeln(Goal), + writeln('Current variables:'), writeln(Variables), + bt,fail. % interact(Variables, Goal, Tracing). +handle_command(fail, _, _, _) :- + writeln('Forcing failure...'), fail. +handle_command(trace, Variables, Goal, Tracing) :- + (Tracing == trace_on -> + NewTracing = trace_off, writeln('Tracing disabled.') + ; NewTracing = trace_on, writeln('Tracing enabled.') + ), + interact(Variables, Goal, NewTracing). +handle_command(up, Variables, Goal, Tracing) :- + writeln('Continuing up...'), + repeat, + ( trace_goal(Goal, Tracing) -> true ; !, fail ). +handle_command(exit, _, _, _) :- + writeln('Exiting debugger...'), !. % Cut to ensure we exit the debugger + +:- style_check(+singleton). + + +% Help description +print_help :- + writeln('Debugger commands:'), + writeln('(;) next - Retry with next solution.'), + writeln('(g) goal - Show the current goal.'), + writeln('(u) up - Finish this goal without interruption.'), + writeln('(s) skip - Skip to the next solution.'), + writeln('(c) creep or - Proceed step by step.'), + writeln('(l) leap - Leap over (the debugging).'), + writeln('(f) fail - Force the current goal to fail.'), + writeln('(B) back - Go back to the previous step.'), + writeln('(t) trace - Toggle tracing on or off.'), + writeln('(e) exit - Exit the debugger.'), + writeln('(a) abort - Abort the current operation.'), + writeln('(b) break - Break to a new sub-REPL.'), + writeln('(h) help - Display this help message.'), + writeln('(A) alternatives - Show alternative solutions.'), + writeln('(m) make - Recompile/Update the current running code.'), + writeln('(C) compile - Compile a fresh executable (based on the running state).'), + writeln('(E) error msg - Show the latest error messages.'), + writeln('(r) retry - Retry the previous command.'), + writeln('(I) info - Show information about the current state.'), + !. + + + + +really_trace:- once(option_value('exec',rtrace);option_value('eval',rtrace);is_debugging((exec));is_debugging((eval))). +% !(pragma! exec rtrace) +may_rtrace(Goal):- really_trace,!, really_rtrace(Goal). +may_rtrace(Goal):- Goal*->true;( \+ tracing, trace,really_rtrace(Goal)). +really_rtrace(Goal):- use_metta_compiler,!,rtrace(call(Goal)). +really_rtrace(Goal):- with_debug((eval),with_debug((exec),Goal)). + +rtrace_on_existence_error(G):- !, catch_err(G,E, (fbug(E=G), \+ tracing, trace, rtrace(G))). +%rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). + +prolog_only(Goal):- mnotrace(if_t(option_value(prolog,true), call(Goal))). + +write_compiled_exec(Exec,Goal):- +% ignore(Res = '$VAR'('ExecRes')), + compile_for_exec(Res,Exec,Goal), + mnotrace((color_g_mesg('#114411',portray_clause(exec(Res):-Goal)))). + +verbose_unify(Term):- verbose_unify(trace,Term). +verbose_unify(What,Term):- term_variables(Term,Vars),maplist(verbose_unify0(What),Vars),!. +verbose_unify0(What,Var):- put_attr(Var,verbose_unify,What). +verbose_unify:attr_unify_hook(Attr, Value) :- + format('~N~q~n',[verbose_unify:attr_unify_hook(Attr, Value)]), + vu(Attr,Value). +vu(_Attr,Value):- is_ftVar(Value),!. +vu(fail,_Value):- !, fail. +vu(true,_Value):- !. +vu(trace,_Value):- trace. +:- nodebug(metta(eval)). +:- nodebug(metta(exec)). +% Measures the execution time of a Prolog goal and displays the duration in seconds, +% milliseconds, or microseconds, depending on the execution time. +% +% Args: +% - Goal: The Prolog goal to be executed and timed. +% +% The predicate uses the `statistics/2` predicate to measure the CPU time before +% and after executing the provided goal. It calculates the elapsed time in seconds +% and converts it to milliseconds and microseconds. The output is formatted to +% provide clear timing information: +% +% - If the execution takes more than 2 seconds, it displays the time in seconds. +% - If the execution takes between 1 millisecond and 2 seconds, it displays the time +% in milliseconds. +% - If the execution takes less than 1 millisecond, it displays the time in microseconds. +% +% Example usage: +% ?- time_eval(my_goal(X)). +% +% ?- time_eval(sleep(0.95)). +% +% Output examples: +% ; Evaluation took 2.34 seconds. +% ; Evaluation took 123.45 ms. +% ; Evaluation took 0.012 ms. (12.33 microseconds) +% +time_eval(Goal):- + time_eval('Evaluation',Goal). +time_eval(What,Goal) :- + timed_call(Goal,Seconds), + give_time(What,Seconds). + +give_time(What,Seconds):- + Milliseconds is Seconds * 1_000, + (Seconds > 2 + -> format('; ~w took ~2f seconds.~n', [What, Seconds]) + ; (Milliseconds >= 1 + -> format('; ~w took ~3f secs. (~2f milliseconds) ~n', [What, Seconds, Milliseconds]) + ;( Micro is Milliseconds * 1_000, + format('; ~w took ~6f secs. (~2f microseconds) ~n', [What, Seconds, Micro])))). + +timed_call(Goal,Seconds):- + statistics(cputime, Start), + call(Goal), + statistics(cputime, End), + Seconds is End - Start. + +%:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). + +:- abolish(fbug/1). +fbug(Info):- in_cmt(color_g_mesg('#2f2f2f',write_src(Info))). +example0(_):- fail. +example1(a). example1(_):- fail. +example2(a). example2(b). example2(_):- fail. +example3(a). example3(b). example3(c). example3(_):- fail. +%eval_H(100,'&self',['change-state!','&var',[+,1,['get-state','&var']]],OUT) +%dcall(X):- (call(X),deterministic(YN)),trace,((YN==true)->!;true). +chkdet_call(XX):- !, call(XX). +chkdet_call0(XX):- !, call(XX). + +dcall0000000000(XX):- + USol = sol(dead), + copy_term(XX,X), + call_nth(USol,X,Nth,Det,Prev), + %fbug(call_nth(USol,X,Nth,Det,Prev)), + XX=Prev, + (Det==yes -> (!, (XX=Prev;XX=X)) ; + (((var(Nth) -> ( ! , Prev\==dead) ; + true), + (Nth==1 -> ! ; true)))). + +call_nth(USol,XX,Nth,Det,Prev):- + repeat, + ((call_nth(XX,Nth),deterministic(Det),arg(1,USol,Prev))*-> + ( nb_setarg(1,USol,XX)) + ; (!, arg(1,USol,Prev))). + +catch_red(Term):- catch_err(Term,E,pp_m(red,in(Term,E))). +%catch_red(Term):- call(Term). + +s2p(I,O):- sexpr_s2p(I,O),!. + +discover_head(Self,Load,Head):- + ignore(([Fn|PredDecl]=Head, + nop(( arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_head(Self,Fn,EachArg)))))). + +discover_body(Self,Load,Body):- + nop(( [Fn|PredDecl] = Body, arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_body(Self,Fn,EachArg)))). + +decl_length(TypeDecL,Len):- is_list(TypeDecL),!,length(TypeDecL,Len). +decl_length(_TypeDecL,1). + +arg_types([['->'|L]],R,LR):-!, arg_types(L,R,LR). +arg_types(['->'|L],R,LR):-!, arg_types(L,R,LR). +arg_types(L,R,LR):- append(L,R,LR). + +%:- ensure_loaded('../../examples/factorial'). +%:- ensure_loaded('../../examples/fibonacci'). + +:- abolish(notrace/1). +notrace(G):- once(G). + +%print_preds_to_functs:-preds_to_functs_src(factorial_tail_basic) +ggtrace(G):- call(G). +ggtrace0(G):- ggtrace, + leash(-all), + visible(-all), + % debug, + %visible(+redo), + visible(+call), + visible(+exception), + maybe_leash(+exception), + setup_call_cleanup(trace,G,notrace). +:- dynamic(began_loon/1). +loon:- loon(typein). + + +catch_red_ignore(G):- catch_red(G)*->true;true. + +:- export(loon/1). +:- public(loon/1). + + +%loon(Why):- began_loon(Why),!,fbug(begun_loon(Why)). +loon(Why):- is_compiling,!,fbug(compiling_loon(Why)),!. +%loon( _Y):- current_prolog_flag(os_argv,ArgV),member('-s',ArgV),!. +% Why\==toplevel,Why\==default, Why\==program,! +loon(Why):- is_compiled, Why\==toplevel,!,fbug(compiled_loon(Why)),!. +loon(Why):- began_loon(_),!,fbug(skip_loon(Why)). +loon(Why):- fbug(began_loon(Why)), assert(began_loon(Why)), + do_loon. + +do_loon:- + ignore(( + \+ prolog_load_context(reloading,true), + maplist(catch_red_ignore,[ + + %if_t(is_compiled,ensure_metta_learner), + metta_final, + load_history, + update_changed_files, + run_cmd_args, + pre_halt, + maybe_halt(7)]))),!. + + +need_interaction:- \+ option_value('had_interaction',true), + \+ is_converting, \+ is_compiling, \+ is_pyswip,!, + option_value('prolog',false), option_value('repl',false), \+ metta_file(_Self,_Filename,_Directory). + +pre_halt:- is_compiling,!,fail. +pre_halt:- option_value('prolog',true),!,set_option_value('prolog',started),call_cleanup(prolog,pre_halt). +pre_halt:- option_value('repl',true),!,set_option_value('repl',started),call_cleanup(repl,pre_halt). +pre_halt:- need_interaction, set_option_value('had_interaction',true),call_cleanup(repl,pre_halt). + +pre_halt:- loonit_report. +%loon:- time(loon_metta('./examples/compat/test_scripts/*.metta')),fail. +%loon:- repl, (option_value('halt',false)->true;halt(7)). +%maybe_halt(Seven):- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,halt(Seven). +maybe_halt(_):- once(pre_halt), fail. +maybe_halt(Seven):- option_value('halt',true),!,halt(Seven). +maybe_halt(Seven):- fbug(maybe_halt(Seven)). + +:- initialization(nb_setval(cmt_override,lse('; ',' !(" ',' ") ')),restore). + + +%needs_repl:- \+ is_converting, \+ is_pyswip, \+ is_compiling, \+ has_file_arg. +% libswipl: ['./','-q',--home=/usr/local/lib/swipl] + +:- initialization(show_os_argv). + +:- initialization(loon(program),program). +:- initialization(loon(default)). + +ensure_mettalog_system:- + abolish(began_loon/1), + dynamic(began_loon/1), + system:use_module(library(quasi_quotations)), + system:use_module(library(hashtable)), + system:use_module(library(gensym)), + system:use_module(library(sort)), + system:use_module(library(writef)), + system:use_module(library(rbtrees)), + system:use_module(library(dicts)), + system:use_module(library(shell)), + system:use_module(library(edinburgh)), + % system:use_module(library(lists)), + system:use_module(library(statistics)), + system:use_module(library(nb_set)), + system:use_module(library(assoc)), + system:use_module(library(pairs)), + user:use_module(library(swi_ide)), + user:use_module(library(prolog_profile)), + %metta_python, + %ensure_loaded('./metta_vspace/pyswip/flybase_convert'), + %ensure_loaded('./metta_vspace/pyswip/flybase_main'), + ensure_loaded(library(metta_python)), + ensure_loaded(library(flybase_convert)), + ensure_loaded(library(flybase_main)), + autoload_all, + make, + autoload_all, + %pack_install(predicate_streams, [upgrade(true),global(true)]), + %pack_install(logicmoo_utils, [upgrade(true),global(true)]), + %pack_install(dictoo, [upgrade(true),global(true)]), + !. + +file_save_name(E,_):- \+ atom(E),!,fail. +file_save_name(E,Name):- file_base_name(E,BN),BN\==E,!,file_save_name(BN,Name). +file_save_name(E,E):- atom_concat('Sav.',_,E),!. +file_save_name(E,E):- atom_concat('Bin.',_,E),!. +before_underscore(E,N):-atomic_list_concat([N|_],'_',E),!. +save_name(Name):- current_prolog_flag(os_argv,ArgV),member(E,ArgV),file_save_name(E,Name),!. +next_save_name(Name):- save_name(E), + before_underscore(E,N), + atom_concat(N,'_',Stem), + gensym(Stem,Name), + \+ exists_file(Name), + Name\==E,!. +next_save_name('Sav.MeTTaLog'). +qcompile_mettalog:- + ensure_mettalog_system, + catch_err(qsave_program('Sav.MeTTaLog', + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(true)]),E,writeln(E)), + halt(0). +qsave_program:- ensure_mettalog_system, next_save_name(Name), + catch_err(qsave_program(Name, + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(false)]),E,writeln(E)), + !. + + + +:- initialization(update_changed_files,restore). + +:- ignore((( + \+ prolog_load_context(reloading,true), + initialization(loon(restore),restore), + metta_final +))). +:- set_prolog_flag(metta_interp,ready). diff --git a/metta_vspace/pyswip_lng/metta_prelude.metta b/metta_vspace/pyswip-12-15/metta_prelude.metta similarity index 100% rename from metta_vspace/pyswip_lng/metta_prelude.metta rename to metta_vspace/pyswip-12-15/metta_prelude.metta diff --git a/metta_vspace/pyswip-12-15/metta_prelude.pl b/metta_vspace/pyswip-12-15/metta_prelude.pl new file mode 100755 index 00000000..8594b787 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_prelude.pl @@ -0,0 +1,242 @@ +%;`$then`, `$else` should be of `Atom` type to avoid evaluation +%; and infinite cycle in inference +metta_type('&self',if,[ ->, 'Bool','Atom','Atom',_]). +metta_defn_ES([if,'True',A,_],A). +metta_defn_ES([if,'False',_,A],A). +metta_type('&self','Error',[->,'Atom','Atom','ErrorType']). +metta_defn_ES(['if-non-empty-expression',A,B,C],[ chain, + [ eval, + ['get-metatype',A]], + D, + [ eval, + [ 'if-equal', D,'Expression', + [ eval, + [ 'if-equal', A, [], C, B]], + C]]]). +metta_defn_ES([ 'if-decons', A,B,C,D, + E],[ eval, + [ 'if-non-empty-expression', + A, + [ chain, + [decons,A], + F, + [ match, + F, + [B,C], D,E]], + E]]). +metta_defn_ES(['if-empty',A,B,C],[ eval, + [ 'if-equal', A,'Empty',B,C]]). +metta_defn_ES(['if-error',A,B,C],[ eval, + [ 'if-decons', A,D,_, + [ eval, + [ 'if-equal', D,'Error',B,C]], + C]]). +metta_defn_ES(['return-on-error',A,B],[ eval, + [ 'if-empty', A,'Empty', + [ eval, + ['if-error',A,A,B]]]]). +metta_defn_ES([car,A],[ eval, + [ 'if-decons', A,B,_,B, + [ 'Error', + [car,A], + '$STRING'("car expects a non-empty expression as an argument")]]]). +metta_defn_ES([switch,A,B],[ chain, + [decons,B], + C, + [ eval, + ['switch-internal',A,C]]]). +metta_defn_ES([ 'switch-internal', + A, + [ [B,C], + D]],[ match, A,B,C, + [ eval, + [switch,A,D]]]). +metta_defn_ES([subst,A,B,C],[ match, A,B,C, + [ 'Error', + [subst,A,B,C], + '$STRING'("subst expects a variable as a second argument")]]). +metta_defn_ES([reduce,A,B,C],[ chain, + [eval,A], + D, + [ eval, + [ 'if-error', D,D, + [ eval, + [ 'if-empty', + D, + [ eval, + [subst,A,B,C]], + [ eval, + [reduce,D,B,C]]]]]]]). +metta_defn_ES(['type-cast',A,B,C],[ chain, + [ eval, + ['get-type',A,C]], + D, + [ eval, + [ switch, + [D,B], + [ [ ['%Undefined%',E], + A], + [ [E,'%Undefined%'], + A], + [ [B,E], + A], + [ E, + ['Error',A,'BadType']]]]]]). +metta_defn_ES(['is-function',A],[ chain, + [ eval, + ['get-metatype',A]], + B, + [ eval, + [ switch, + [A,B], + [ [ [C,'Expression'], + [ chain, + [ eval, + [car,A]], + D, + [ match, D,->,'True','False']]], + [C,'False']]]]]). +metta_defn_ES([interpret,A,B,C],[ chain, + [ eval, + ['get-metatype',A]], + D, + [ eval, + [ switch, + [B,D], + [ [ ['Atom',_], + A], + [ [D,D], + A], + [ [E,'Variable'], + A], + [ [E,'Symbol'], + [ eval, + ['type-cast',A,B,C]]], + [ [E,'Grounded'], + [ eval, + ['type-cast',A,B,C]]], + [ [E,'Expression'], + [ eval, + ['interpret-expression',A,B,C]]]]]]]). +metta_defn_ES(['interpret-expression',A,B,C],[ eval, + [ 'if-decons', A,D,_, + [ chain, + [ eval, + ['get-type',D,C]], + E, + [ chain, + [ eval, + ['is-function',E]], + F, + [ match, F,'True', + [ chain, + [ eval, + ['interpret-func',A,E,C]], + G, + [ eval, + [call,G,B,C]]], + [ chain, + [ eval, + ['interpret-tuple',A,C]], + G, + [ eval, + [call,G,B,C]]]]]], + [ eval, + ['type-cast',A,B,C]]]]). +metta_defn_ES(['interpret-func',A,B,C],[ eval, + [ 'if-decons', A,D,E, + [ chain, + [ eval, + [interpret,D,B,C]], + F, + [ eval, + [ 'return-on-error', + F, + [ eval, + [ 'if-decons', B,_,G, + [ chain, + [ eval, + [ 'interpret-args', A,E,G, + C]], + H, + [ eval, + [ 'return-on-error', + H, + [cons,F,H]]]], + [ 'Error', B,'$STRING'("Function type expected")]]]]]], + [ 'Error', + A, + '$STRING'("Non-empty expression atom is expected")]]]). +metta_defn_ES([ 'interpret-args', A,B,C,D],[ match, + B, + [], + [ match, + C, + [_], + [], + ['Error',A,'BadType']], + [ eval, + [ 'if-decons', B,E,F, + [ eval, + [ 'if-decons', C,G,H, + [ chain, + [ eval, + [interpret,E,G,D]], + I, + [ eval, + [ 'if-equal', I,E, + [ eval, + [ 'interpret-args-tail', A,I,F, + H,D]], + [ eval, + [ 'return-on-error', + I, + [ eval, + [ 'interpret-args-tail', A,I,F, + H,D]]]]]]], + ['Error',A,'BadType']]], + [ 'Error', + [ 'interpret-atom', A,B,C, + D], + '$STRING'("Non-empty expression atom is expected")]]]]). +%; check that head was changed otherwise Error or Empty in the head +%; can be just an argument which is passed by intention +metta_defn_ES([ 'interpret-args-tail', A,B,C,D, + E],[ chain, + [ eval, + [ 'interpret-args', A,C,D,E]], + F, + [ eval, + [ 'return-on-error', + F, + [cons,B,F]]]]). +metta_defn_ES(['interpret-tuple',A,B],[ match, + A, + [], + A, + [ eval, + [ 'if-decons', A,C,D, + [ chain, + [ eval, + [interpret,C,'%Undefined%',B]], + E, + [ chain, + [ eval, + ['interpret-tuple',D,B]], + F, + [cons,E,F]]], + [ 'Error', + ['interpret-tuple',A,B], + '$STRING'("Non-empty expression atom is expected as an argument")]]]]). +metta_defn_ES([call,A,B,C],[ chain, + [eval,A], + D, + [ eval, + [ 'if-empty', D,A, + [ eval, + [ 'if-error', D,D, + [ eval, + [interpret,D,B,C]]]]]]]). +% 1,264,919 inferences, 0.139 CPU in 0.140 seconds (99% CPU, 9074539 Lips) +% (= metta_prelude.metta 0) + diff --git a/metta_vspace/pyswip-12-15/metta_python.pl b/metta_vspace/pyswip-12-15/metta_python.pl new file mode 100755 index 00000000..65a830f1 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_python.pl @@ -0,0 +1,314 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +%:- '$set_source_module'('user'). +/* +# Core in Rust +In the original version, the core logic and functionalities of the MeTTa system are implemented in Rust. Rust is known for its performance and safety features, making it a suitable choice for building robust, high-performance systems. + +# Python Extensions +Python is used to extend or customize MeTTa. Typically, Python interacts with the Rust core through a Foreign Function Interface (FFI) or similar bridging mechanisms. This allows Python programmers to write code that can interact with the lower-level Rust code, while taking advantage of Python's ease of use and rich ecosystem. + +# Prolog Allows Python Extensions +Just like the Rust core allowed for Python extensions, the Prolog code also permits Python and Rust developers (thru python right now) to extend or customize parts of MeTTa. This maintains the system?s extensibility and allows users who are more comfortable with Python to continue working with the system effectively. + +*/ + + +:- use_module(library(janus)). +:- use_module(library(filesex)). + +:- multifile(is_python_space/1). +:- dynamic(is_python_space/1). +:- volatile(is_python_space/1). + +is_rust_space(GSpace):- is_python_space(GSpace). + +is_not_prolog_space(GSpace):- is_rust_space(GSpace), !. +is_not_prolog_space(GSpace):- \+ is_asserted_space(GSpace), \+ is_nb_space(GSpace), !. + +with_safe_argv(Goal):- + current_prolog_flag(argv,Was), + setup_call_cleanup(set_prolog_flag(argv,[]),Goal,set_prolog_flag(argv,Was)). + +ensure_space_py(Space,GSpace):- py_is_object(Space),!,GSpace=Space. +ensure_space_py(Space,GSpace):- var(Space),ensure_primary_metta_space(GSpace), Space=GSpace. +ensure_space_py(metta_self,GSpace):- ensure_primary_metta_space(GSpace),!. + +:- dynamic(is_metta/1). +:- volatile(is_metta/1). +ensure_rust_metta(MeTTa):- is_metta(MeTTa),!. +ensure_rust_metta(MeTTa):- + with_safe_argv(py_call(hyperon:'MeTTa'(),MeTTa)), + asserta(is_metta(MeTTa)). + +ensure_rust_metta:- ensure_rust_metta(_). + +:- dynamic(is_metta_learner/1). +:- volatile(is_metta_learner/1). +ensure_metta_learner(Metta_Learner):- is_metta_learner(Metta_Learner),!. +ensure_metta_learner(Metta_Learner):- + with_safe_argv(py_call(metta_vspace:'metta_learner':'MettaLearner'(),Metta_Learner)), + asserta(is_metta_learner(Metta_Learner)). + + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_not_prolog_space,new_space,new_rust_space). +space_type_method(is_not_prolog_space,add_atom,add_to_space). +space_type_method(is_not_prolog_space,remove_atom,remove_from_space). +space_type_method(is_not_prolog_space,replace_atom,replace_in_space). +space_type_method(is_not_prolog_space,atom_count,atom_count_from_space). +space_type_method(is_not_prolog_space,get_atoms,query_from_space). +space_type_method(is_not_prolog_space,atom_iter,atoms_iter_from_space). +space_type_method(is_not_prolog_space,query,query_from_space). + +:- dynamic(is_primary_metta_space/1). +:- volatile(is_primary_metta_space/1). +% Initialize a new hyperon.base.GroundingSpace and get a reference +ensure_primary_metta_space(GSpace) :- is_primary_metta_space(GSpace),!. +ensure_primary_metta_space(GSpace) :- ensure_rust_metta(MeTTa), + with_safe_argv(py_call(MeTTa:space(),GSpace)), + asserta(is_primary_metta_space(GSpace)). +ensure_primary_metta_space(GSpace) :- new_rust_space(GSpace). +ensure_primary_metta_space:- ensure_primary_metta_space(_). + +:- if( \+ current_predicate(new_rust_space/1 )). +% Initialize a new hyperon.base.GroundingSpace and get a reference +new_rust_space(GSpace) :- + with_safe_argv(py_call(hyperon:base:'GroundingSpace'(), GSpace)), + asserta(is_python_space(GSpace)). +:- endif. + +:- if( \+ current_predicate(query_from_space/3 )). +% Query from hyperon.base.GroundingSpace +query_from_space(Space, QueryAtom, Result) :- + ensure_space(Space,GSpace), + py_call(GSpace:'query'(QueryAtom), Result). + + +% Replace an atom in hyperon.base.GroundingSpace +replace_in_space(Space, FromAtom, ToAtom) :- + ensure_space(Space,GSpace), + py_call(GSpace:'replace'(FromAtom, ToAtom), _). + +% Get the atom count from hyperon.base.GroundingSpace +atom_count_from_space(Space, Count) :- + ensure_space(Space,GSpace), + py_call(GSpace:'atom_count'(), Count). + +% Get the atoms from hyperon.base.GroundingSpace +atoms_from_space(Space, Atoms) :- + ensure_space(Space,GSpace), + py_call(GSpace:'get_atoms'(), Atoms). + +atom_from_space(Space, Sym):- + atoms_iter_from_space(Space, Atoms),elements(Atoms,Sym). + +% Get the atom iterator from hyperon.base.GroundingSpace +atoms_iter_from_space(Space, Atoms) :- + ensure_space(Space,GSpace), + with_safe_argv(py_call(metta_vspace:'metta_learner':get_atoms_iter_from_space(GSpace),Atoms)), + %py_call(GSpace:'atoms_iter'(), Atoms). + true. +:- endif. + +py_to_pl(I,O):- py_to_pl(_,I,O). +py_to_pl(VL,I,O):- ignore(VL=[vars]), py_to_pl(VL,[],[],_,I,O),!. +is_var_or_nil(I):- var(I),!. +is_var_or_nil([]). +%py_to_pl(VL,Par,_Cir,_,L,_):- wdmsg(py_to_pl(VL,Par,L)),fail. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- var(L),!,E=L. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- L ==[],!,E=L. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- member(N-NE,Cir), N==L, !, (E=L;NE=E), !. +py_to_pl(_VL,_Par,Cir,Cir, LORV:_B:_C,LORV):- is_var_or_nil(LORV), !. +py_to_pl(VL,Par,Cir,CirO,[H|T]:B:C,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B:C,HH), py_to_pl(VL,Par,CirM,CirO,T:B:C,TT). +py_to_pl(_VL,_Par,Cir,Cir, LORV:_B,LORV):- is_var_or_nil(LORV), !. +py_to_pl(VL,Par,Cir,CirO,[H|T]:B,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B,HH), py_to_pl(VL,Par,CirM,CirO,T:B,TT). +py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R:C,AB). +py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R,AB). +py_to_pl(VL,Par,Cir,CirO,A:B,AA:BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). +py_to_pl(VL,Par,Cir,CirO,A-B,AA-BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). +py_to_pl(_VL,_Par,Cir,Cir,L,E):- atom(L),!,E=L. +py_to_pl(VL,Par,Cir,CirO,[H|T],[HH|TT]):- !, py_to_pl(VL,Par,Cir,CirM,H,HH), py_to_pl(VL,Par,CirM,CirO,T,TT). +py_to_pl(VL,Par,Cir,CirO,O,E):- py_is_object(O),py_class(O,Cl),!,pyo_to_pl(VL,Par,[O=E|Cir],CirO,Cl,O,E). +py_to_pl(VL,Par,Cir,CirO,L,E):- is_dict(L,F),!,dict_pair(L,F,NV),!,py_to_pl(VL,Par,Cir,CirO,NV,NVL),dict_pair(E,F,NVL). +py_to_pl(_VL,_Par,Cir,Cir,L,E):- \+ callable(L),!,E=L. +%py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R:C,AB). +%py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R,AB). +py_to_pl(VL,Par,Cir,CirO,A,AA):- compound(A),!,compound_name_arguments(A,F,L),py_to_pl(VL,Par,Cir,CirO,L,LL),compound_name_arguments(AA,F,LL). +py_to_pl(_VL,_Par,Cir,Cir,E,E). +/* +varname_to_real_var(RL,E):- upcase_atom(RL,R),varname_to_real_var0(R,E). +varname_to_real_var0(R,E):- nb_current('cvariable_names',VL),!,varname_to_real_var0(R,VL,E). +varname_to_real_var0(R,E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). +varname_to_real_var0(R,[],E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). +varname_to_real_var0(R,VL,E):- member(N=V,VL), N==R,!,arg(1,V,E). +varname_to_real_var0(R,VL,E):- extend_container(VL,R=v(_)),varname_to_real_var0(R,E).*/ +% Predicate to extend the list inside the container +extend_container(Container, Element) :- + arg(2, Container, List), + nb_setarg(2, Container, [Element|List]). + +rinto_varname(R,RN):- atom_number(R,N),atom_concat('Num',N,RN). +rinto_varname(R,RN):- upcase_atom(R,RN). +real_VL_var(RL,VL,E):- nonvar(RL), !, rinto_varname(RL,R),!,real_VL_var0(R,VL,E). +real_VL_var(RL,VL,E):- member(N=V,VL), V==E,!,RL=N. +real_VL_var(RL,VL,E):- compound(E),E='$VAR'(RL),ignore(real_VL_var0(RL,VL,E)),!. +real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), member(N=V,VL), N==RL,!,V=E. +real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), real_VL_var0(RL,VL,E). +real_VL_var0(R,VL,E):- member(N=V,VL), N==R,!,V=E. +real_VL_var0(R,VL,E):- extend_container(VL,R=E),!. % ,E='$VAR'(R). + +pyo_to_pl(VL,_Par,Cir,Cir,Cl,O,E):- Cl=='VariableAtom', !, py_call(O:get_name(),R), real_VL_var(R,VL,E),!. +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl1(Par,Cl,M),py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl(Par,Cl,M), % wdmsg(class_to_pl(Par,Cl,M)), + py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- catch(py_obj_dir(O,L),_,fail),wdmsg(py_obj_dir(O,L)),py_decomp(M),meets_dir(L,M),wdmsg(py_decomp(M)), + py_member_values(O,M,R), member(N-_,Cir), R\==N, !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E),!. + +pl_to_py(Var,Py):- pl_to_py(_VL,Var,Py). +pl_to_py(VL,Var,Py):- var(VL),!,ignore(VL=[vars]),pl_to_py(VL,Var,Py). +pl_to_py(_VL,Sym,Py):- is_list(Sym),!, maplist(pl_to_py,Sym,PyL), py_call(metta_vspace:'metta_learner':'MkExpr'(PyL),Py),!. +pl_to_py(VL,Var,Py):- var(Var), !, real_VL_var(Sym,VL,Var), py_call('hyperon.atoms':'V'(Sym),Py),!. +pl_to_py(VL,'$VAR'(Sym),Py):- !, real_VL_var(Sym,VL,_),py_call('hyperon.atoms':'V'(Sym),Py),!. +pl_to_py(VL,DSym,Py):- atom(DSym),atom_concat('$',VName,DSym), rinto_varname(VName,Sym),!, pl_to_py(VL,'$VAR'(Sym),Py). +pl_to_py(_VL,Sym,Py):- atom(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. +pl_to_py(_VL,Sym,Py):- string(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. +%pl_to_py(VL,Sym,Py):- is_list(Sym), maplist(pl_to_py,Sym,PyL), py_call('hyperon.atoms':'E'(PyL),Py),!. +pl_to_py(_VL,Sym,Py):- py_is_object(Sym),py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. +pl_to_py(_VL,Sym,Py):- py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. + +%elements(Atoms,E):- is_list(Atoms),!, +meets_dir(L,M):- atom(M),!,member(M,L),!. +meets_dir(L,M):- is_list(M),!,maplist(meets_dir(L),M). +meets_dir(L,M):- compound_name_arity(M,N,0),!,member(N,L),!. +meets_dir(L,M):- compound(M),!,compound_name_arguments(M,F,[A|AL]),!,maplist(meets_dir(L),[F,A|AL]). + +py_member_values(O,C,R):- is_list(O),!,maplist(py_member_values,O,C,R). +py_member_values(O,C,R):- is_list(C),!,maplist(py_member_values(O),C,R). +%py_member_values(O,C,R):- atom(C),!,compound_name_arity(CC,C,0),!,py_call(O:CC,R). +py_member_values(O,f(F,AL),R):- !,py_member_values(O,[F|AL],[RF|RAL]), compound_name_arguments(R,RF,RAL). +py_member_values(O,C,R):- py_call(O:C,R,[py_string_as(atom),py_object(false)]). + +py_to_str(PyObj,Str):- + with_output_to(string(Str),py_pp(PyObj,[nl(false)])). + + tafs:- + atoms_from_space(Space, _),py_to_pl(VL,Space,AA), print_tree(aa(Pl,aa)),pl_to_py(VL,AA,Py), print_tree(py(Pl,py)),pl_to_py(VL,Py,Pl),print_tree(pl(Pl,pl)) + , + atoms_from_space(Space, [A]),py_to_pl(VL,A,AA), + atoms_from_space(Space, [A]),py_obj_dir(A,D),writeq(D),!,py_to_pl(VL,D:get_object(),AA),writeq(AA),!,fail. + +py_class(A,AA):- py_call(A:'__class__',C), py_call(C:'__name__',AA,[py_string_as(atom)]),!. +py_decomp(M,C):- py_decomp(M), compound_name_arity(C,M,0). + + +class_to_pl1(_Par,'GroundingSpaceRef',get_atoms()). +class_to_pl1(_Par,'ExpressionAtom',get_children()). +class_to_pl1(_Par,'SpaceRef',get_atoms()). +class_to_pl1(_Par,'VariableAtom','__repr__'()). +class_to_pl1(_Par,'SymbolAtom',get_name()). +class_to_pl1(_Par,'bool','__repr__'()). +class_to_pl(_Par,'ValueAtom','__repr__'()). +class_to_pl(_Par,'ValueObject','value'). +class_to_pl(Par,'GroundedAtom','__repr__'()):- length(Par,Len),Len>=5,!. +class_to_pl(Par,_,'__str__'()):- length(Par,Len),Len>15,!. +class_to_pl(_Par,'GroundedAtom',get_object()). + +/* + + +class_to_pl(Par,'bool','__repr__'()). + +*/ +py_decomp('__repr__'()). +py_decomp('__str__'()). +py_decomp(get_atoms()). +py_decomp(get_children()). +py_decomp(get_object()). +py_decomp(get_name()). +py_decomp(value()). + +py_decomp('__class__':'__name__'). +%py_decomp(f(get_grounded_type(),['__str__'()])). +py_decomp(f('__class__',['__str__'()])). +%__class__ +%get_type() + +%atoms_from_space(Space, [Atoms]),py_pp(Atoms),py_call(Atoms:get_object(),A),atoms_from_space(A,Dir),member(E,Dir),py_obj_dir(E,C),py_call(E:get_children(),CH),py_pp(CH). + + +% Remove an atom from hyperon.base.GroundingSpace +:- if( \+ current_predicate(remove_from_space/2 )). +remove_from_space(Space, Sym) :- + ensure_space(Space,GSpace), + py_call(GSpace:'remove'(Sym), _). +:- endif. + +% Add an atom to hyperon.base.GroundingSpace +:- if( \+ current_predicate(add_to_space/2 )). +add_to_space(Space, Sym) :- + ensure_space(Space,GSpace), + py_call(GSpace:'add'(Sym), _). +:- endif. + + +'extend-py!'(Module,_):- + with_safe_argv(( + %listing(ensure_rust_metta/1), + ensure_metta_learner, + wdmsg('extend-py!'(Module)), + ensure_rust_metta(MeTTa), + replace_in_string(["/"="."],Module,ToPython), + py_call(MeTTa:load_py_module(ToPython),Result), + wdmsg(result(MeTTa->Result)))),!. + +ensure_metta_learner:- + with_safe_argv(ensure_metta_learner(Learner)), + wdmsg(ensure_metta_learner(Learner)). + +% Example usage +example_usage :- + with_safe_argv(ensure_primary_metta_space(GSpace)), + %some_query(Query), + Query = [], + with_safe_argv(query_from_space(GSpace, Query , Result)), + writeln(Result). + +%atoms_from_space(Sym):- atoms_iter_from_space(metta_self, Atoms),py_iter(Atoms,Sym). +atom_count_from_space(Count):- atom_count_from_space(metta_self, Count). + + +%:- . +%:- ensure_rust_metta. +%:- with_safe_argv(ensure_primary_metta_space(_GSpace)). +/* +Rust: The core of MeTTa is implemented in Rust, which provides performance and safety features. + +Python Extensions: Python is used for extending the core functionalities. Python communicates with Rust via a Foreign Function Interface (FFI) or similar mechanisms. + +Prolog: The Prolog code is an additional layer that allows you to extend or customize parts of MeTTa using Python and Rust. It maintains the system's extensibility. + + +VSpace is a space with its backend in Prolog, it implies that you're using Prolog's logic programming capabilities to manage and manipulate a particular domain, which in this context is referred to as a "space" (possibly akin to the GroundingSpace in Python, but implemented in Prolog). + +To integrate VSpace with the existing Python and Rust components, similar interfacing techniques could be used. You could expose Prolog predicates as functions that can be called from Python or Rust, and likewise, call Python or Rust functions from within Prolog. + + +*/ + +%:- ensure_loaded(metta_interp). +on_restore1:- ensure_metta_learner. + +:- dynamic(want_py_lib_dir/1). +:- prolog_load_context(directory, ChildDir), + file_directory_name(ChildDir, ParentDir), + file_directory_name(ParentDir, GParentDir), + assert(want_py_lib_dir(GParentDir)). + +want_py_lib_dir:- + with_safe_argv(forall(want_py_lib_dir(GParentDir), py_add_lib_dir(GParentDir))). + +%:- initialization(on_restore1,restore). +%:- initialization(on_restore2,restore). diff --git a/metta_vspace/pyswip_lng/metta_reader.new b/metta_vspace/pyswip-12-15/metta_reader.new similarity index 100% rename from metta_vspace/pyswip_lng/metta_reader.new rename to metta_vspace/pyswip-12-15/metta_reader.new diff --git a/metta_vspace/pyswip-12-15/metta_reader.pl b/metta_vspace/pyswip-12-15/metta_reader.pl new file mode 100755 index 00000000..f3d0d14b --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_reader.pl @@ -0,0 +1,1616 @@ +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ +%:- encoding(iso_latin_1). +:- if(flush_output). :- endif. +:- if(setenv('RUST_BACKTRACE',full)). :- endif. +%:- if(\+ current_module(sxpr_reader)). +:- if( (false, \+ current_prolog_flag(wamcl_modules,false))). +:- module(s3xpr,[ + parse_sexpr/2, + codelist_to_forms/2, + svar_fixvarname/2, + parse_sexpr_untyped/2, + with_kifvars/1, + current_input_to_forms/2, + input_to_forms/2, + input_to_forms/3, + input_to_forms_debug/1, + input_to_forms_debug/2, + sexpr_sterm_to_pterm_list/3, + sexpr//1, + fixvars/4, + txt_to_codes/2, + quietly_sreader/1, + file_sexpr_with_comments//1, + with_lisp_translation/2, + to_untyped/2, + ok_var_name/1, + with_all_rest_info/1, + svar_fixvarname/2, + sexpr_sterm_to_pterm/2, + lisp_read/2, + phrase_from_stream_nd/2, + write_trans/4, + parse_sexpr/2]). +:- endif. + +:- ensure_loaded(swi_support). +:- ensure_loaded(metta_utils). +:- ensure_loaded(metta_testing). +:- set_prolog_flag(encoding,iso_latin_1). +is_wam_cl:- fail. + +:- use_module(library(backcomp)). +:- use_module(library(rbtrees)). + + +:- use_module(library(logicmoo/dcg_must)). +:- use_module(library(logicmoo/dcg_meta)). + + +%:- meta_predicate always_b(//,?,?). +%:- meta_predicate bx(0). +:- meta_predicate call_proc(1,?). +:- meta_predicate dcg_and2(//,//,?,?). +:- meta_predicate dcg_each_call_cleanup(0,//,0,?,?). +:- meta_predicate dcg_not(//,?,?). +:- meta_predicate dcg_phrase(//,?,?). +:- meta_predicate dcg_xor(//,//,?,?). +%:- meta_predicate expr_with_text(*,2,*,*,*). + +:- meta_predicate remove_optional_char(//,?,?). + +:- meta_predicate sexpr_vector0(*,//,?,?). +:- meta_predicate with_all_rest_info(1). +:- meta_predicate with_lisp_translation_stream(*,1). +:- meta_predicate write_trans(+,*,2,?). + +%:- assert((s3xpr:'$exported_op'(_,_,_):- fail)). +%:- assert((xlisting:'$exported_op'(_,_,_):- fail)). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +def_is_characterp(CH):- current_predicate(is_characterp/1),!,call(call,is_characterp,CH). +def_is_characterp_def('#\\'(_)). + +def_to_prolog_string(I,O):- current_predicate(to_prolog_string/2),!,call(call,to_prolog_string,I,O). +def_to_prolog_string(I,O):- any_to_string(I,O). + + +def_compile_all(I,O):- current_predicate(compile_all/2),!,call(call,compile_all,I,O). +def_compile_all(I,O):- wdmsg(undefined_compile_all(I)),I=O. + + +zalwayzz(G):- call(G)*->true;throw(fail_zalwayzz(G)). +zalwayzz(G,I,O):- phrase(G,I,O)*->true;ignore(((ignore((append(I,[],Txt),name(Str,Txt))),throw(fail_zalwayzz(Str,G))))). + + +% DCG rules for S-expressions metta_with metta_whitespace and comments +s_expr_metta(List) --> metta_wspace,!, s_expr_metta(List). +s_expr_metta(List) --> `(`, !, items_metta(List, `)`). +s_expr_metta(['[...]',List]) --> `[`, !, items_metta(List, `]`). +s_expr_metta(['{...}',List]) --> `{`, !, items_metta(List, `}`). + + +items_metta([], Until) --> Until,!. +items_metta([Item|Rest], Until) --> s_item_metta(Item, dcg_peek(Until)), !, items_metta(Rest, Until). + +%s_line_metta(end_of_file) --> file_eof,!. +s_line_metta(Expr) --> metta_wspace, !, s_line_metta(Expr). +s_line_metta(exec(Expr)) --> `!`, !, s_item_metta(Expr, e_o_s). +s_line_metta(Expr) --> s_item_metta(Expr, e_o_s). + +%s_item_metta(end_of_file, _) --> file_eof,!. +s_item_metta(Expr, Until) --> metta_wspace, !, s_item_metta(Expr, Until). +%s_item_metta('Expr', Until) --> Until,!. +s_item_metta(List,_Until) --> s_expr_metta(List),!. +s_item_metta(String,_Until) --> string_metta(String),!. +s_item_metta(Symbol, Until) --> symbol_metta(Symbol, Until). + +:- encoding(iso_latin_1). +%string_metta(S) --> `"`, !, string_until_metta(S, `"`), {atomics_to_string_metta(A,S)}. +%string_metta(Text) --> `"`, !, zalmetta_wayzz_metta(string_until_metta(Text,`"`)),!. +%string_metta(Text) --> `“`, !, zalmetta_wayzz_metta(string_until_metta(Text,(`”`;`“`))),!. +string_metta(Text) --> (`"`), string_until_metta(L,(`"`)), {atomics_to_string(L,Text)}, !. +string_metta(Text) --> (`”`;`“`;`"`), !, string_until_metta(L,(`“`;`”`;`"`)), {atomics_to_string(L,Text)}. +:- encoding(utf8). +%string_metta(Text) --> `#|`, !, zalmetta_wayzz_metta(string_until_metta(Text,`|#`)),!. + +% string_until_metta([], _) --> e_o_s, !. +%string_until_metta([], _) --> file_eof,!. +string_until_metta([], Until) --> Until, !. +string_until_metta([C|Cs], Until) --> escape_sequence_metta(C), !, string_until_metta(Cs, Until). +string_until_metta([C|Cs], Until) --> [R], { name(C, [R]) }, string_until_metta(Cs, Until). + +escape_sequence_metta(Char) --> `\\`,[Esc], { escape_char_metta([Esc], Char) }. +escape_char_metta(`"`, "\""). +escape_char_metta(`\\`, "\\"). +escape_char_metta(`n`, "\n"). +escape_char_metta(`r`, "\r"). +escape_char_metta(`t`,"\t"). +escape_char_metta(C,S):- sformat(S,'~s',[[C]]). + +symbol_metta(S, Until) --> metta_wspace,!,symbol_metta(S, Until). +symbol_metta(S, Until) --> string_until_metta(SChars,(dcg_peek(metta_white); Until)), { atomic_list_concat(SChars, S) }. + +%comment --> `;`,!,comment_chars_metta(S). +comment_chars_metta(S) --> string_until_metta(SChars,`\n`), { atomic_list_concat(SChars, S) }. + +%e_o_s --> file_eof,!. +e_o_s --> \+ [_|_]. + +%metta_ws --> e_o_s,!. +metta_ws --> metta_wspace, !, metta_ws. +metta_ws --> []. +metta_wspace --> `;`,!, comment_chars_metta(S), {assert(comment_metta(S))}. +metta_wspace --> metta_white. +metta_white --> [W], { char_type(W, white) }, !. + + + +%:- meta_predicate(always(0)). +%always(G):- must(G). + +:- use_module(library(logicmoo/filestreams)). +%:- use_module(library(bugger)). + +:- if(exists_file('./header')). +% :- include('./header'). +:- endif. +%:- use_module(eightball). + +:- thread_local(t_l:sreader_options/2). +kif_ok:- t_l:sreader_options(logicmoo_read_kif,TF),!,TF==true. + +with_kif_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,true),G). + +with_kif_not_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,false),G). + + +:- meta_predicate((with_lisp_translation(+,1),input_to_forms_debug(+,:))). +:- meta_predicate sexpr_vector(*,//, + ?,?). + + +:- dynamic user:file_search_path/2. +:- multifile user:file_search_path/2. + +:- thread_local(t_l:s_reader_info/1). + +:- meta_predicate(quietly_sreader(0)). +%quietly_sreader(G):- quietly(G). +quietly_sreader(G):- !, call(G). + +%% with_lisp_translation( +FileOrStream, :Pred1) is det. +% +% With File or Stream read all S-expressions submitting each to Pred1 +% +with_lisp_translation(In,Pred1):- + is_stream(In),!,with_lisp_translation_stream(In,Pred1). +with_lisp_translation(Other,Pred1):- + setup_call_cleanup(l_open_input(Other,In), + with_lisp_translation_stream(In,Pred1), + ignore(notrace_catch_fail(close(In)))),!. + +with_lisp_translation_stream(In,Pred1):- + repeat, + once((lisp_read(In,O))), + (O== end_of_file + -> (with_all_rest_info(Pred1),!) ; + (((once((zalwayzz(call_proc(Pred1,O))))),fail))). + +call_proc(Pred1,O):- call(Pred1,O),!,with_all_rest_info(Pred1),!. + +with_all_rest_info(Pred1):- + forall(clause(t_l:s_reader_info(O2),_,Ref), + (zalwayzz(once(call(Pred1,O2))),erase(Ref))),!. + +parse_sexpr_untyped(I,O):- quietly_sreader((parse_sexpr(I,M))), + quietly_sreader((to_untyped(M,O))). + +read_pending_whitespace(In):- repeat, peek_char(In,Code), + (( \+ char_type(Code,space), \+ char_type(Code,white))-> ! ; (get_char(In,_),fail)). + + +make_tmpfile_name(Name,Temp):- + atomic_list_concat(List1,'/',Name),atomic_list_concat(List1,'_',Temp1), + atomic_list_concat(List2,'.',Temp1),atomic_list_concat(List2,'_',Temp2), + atomic_list_concat(List3,'\\',Temp2),atomic_list_concat(List3,'_',Temp3), + atom_concat_or_rtrace(Temp3,'.tmp',Temp),!. + + + + +:- meta_predicate(with_lisp_translation_cached(:,2,1)). +:- meta_predicate(maybe_cache_lisp_translation(+,+,2)). + +with_lisp_translation_cached(M:LFile,WithPart2,WithPart1):- + absolute_file_name(LFile,File), + make_tmpfile_name(LFile,Temp), + maybe_cache_lisp_translation(File,Temp,WithPart2),!, + finish_lisp_translation_cached(M,File,Temp,WithPart1). + +finish_lisp_translation_cached(M,File,Temp,WithPart1):- + multifile(M:lisp_trans/2), + dynamic(M:lisp_trans/2), + file_base_name(File,BaseName), + M:load_files([Temp],[qcompile(auto)]), + forall(M:lisp_trans(Part2,BaseName:Line), + once((b_setval('$lisp_translation_line',Line), + zalwayzz(M:call(WithPart1,Part2))))). + +maybe_cache_lisp_translation(File,Temp,_):- \+ file_needs_rebuilt(Temp,File),!. +maybe_cache_lisp_translation(File,Temp,WithPart2):- + file_base_name(File,BaseName), + setup_call_cleanup(open(Temp,write,Outs,[encoding(utf8)]), + must_det((format(Outs,'~N~q.~n',[:- multifile(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- dynamic(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- style_check(-singleton)]), + format(Outs,'~N~q.~n',[lisp_trans(translated(File,Temp,BaseName),BaseName:( -1))]), + with_lisp_translation(File,write_trans(Outs,BaseName,WithPart2)), + format(Outs,'~N~q.~n',[end_of_file]))), + ((ignore(notrace_catch_fail(flush_output(Outs),_,true)),ignore(notrace_catch_fail(close(Outs),_,true))))),!. + + +write_trans(Outs,File,WithPart2,Lisp):- + zalwayzz((call(WithPart2,Lisp,Part), + nb_current('$lisp_translation_line',Line), + format(Outs,'~N~q.~n',[lisp_trans(Part,File:Line)]))),!. + +/* alternate method*/ +phrase_from_stream_partial(Grammar, In):- + phrase_from_stream((Grammar,!,lazy_forgotten(In)), In). + +lazy_forgotten(In,UnUsed,UnUsed):- + (is_list(UnUsed)-> true ; append(UnUsed,[],UnUsed)), + length(UnUsed,PlzUnread), + seek(In, -PlzUnread, current, _). + + +% :- use_module(library(yall)). +% :- rtrace. +% tstl(I):- with_lisp_translation(I,([O]>>(writeq(O),nl))). +tstl(I):- with_kifvars(with_lisp_translation(I,writeqnl)). + +with_kifvars(Goal):- + locally(t_l:sreader_options(logicmoo_read_kif,true),Goal). + + + +%:- thread_local(t_l:fake_buffer_codes/2). + + +%% parse_sexpr( :TermS, -Expr) is det. +% +% Parse S-expression. +% + +parse_sexpr(S, Expr) :- quietly_sreader(parse_meta_term( + file_sexpr_with_comments, S, Expr)). + +%% parse_sexpr_ascii( +Codes, -Expr) is det. +% +% Parse S-expression Codes. +% +parse_sexpr_ascii(S, Expr) :- quietly_sreader(parse_meta_ascii(file_sexpr_with_comments, S,Expr)),!. + + +parse_sexpr_ascii_as_list(Text, Expr) :- txt_to_codes(Text,DCodes), + clean_fromt_ws(DCodes,Codes),!,append([`(`,Codes,`)`],NCodes),!, + phrase(sexpr_rest(Expr), NCodes, []). + + +%% parse_sexpr_string( +Codes, -Expr) is det. +% +% Parse S-expression That maybe sees string from Codes. +% +parse_sexpr_string(S,Expr):- + locally_setval('$maybe_string',t,parse_sexpr(string(S), Expr)),!. + +%% parse_sexpr_stream( +Stream, -Expr) is det. +% +% Parse S-expression from a Stream +% +parse_sexpr_stream(S,Expr):- quietly_sreader(parse_meta_stream(file_sexpr_with_comments,S,Expr)),!. + +:- export('//'(file_sexpr,1)). +:- export('//'(sexpr,1)). + +% for offline use of this lisp reader +intern_and_eval(UTC,V):- current_predicate(lisp_compiled_eval/2),!, + call(call,(reader_intern_symbols(UTC,M),!,lisp_compiled_eval(M,V))). +intern_and_eval(UTC,'$intern_and_eval'(UTC)). + +% Use DCG for parser. + + +%file_sexpr_with_comments(O) --> [], {clause(t_l:s_reader_info(O),_,Ref),erase(Ref)},!. +file_sexpr_with_comments(end_of_file) --> file_eof,!. +file_sexpr_with_comments('+') --> `+`, swhite,!. + +file_sexpr_with_comments(O) --> one_blank,!,file_sexpr_with_comments(O),!. % WANT? +file_sexpr_with_comments(end_of_file) --> `:EOF`,!. +file_sexpr_with_comments(C) --> dcg_peek(`#|`),!,zalwayzz(comment_expr(C)),swhite,!. +file_sexpr_with_comments(C) --> dcg_peek(`;`),!, zalwayzz(comment_expr(C)),swhite,!. +file_sexpr_with_comments(Out) --> {kif_ok}, prolog_expr_next, prolog_readable_term(Out), !. +file_sexpr_with_comments(Out,S,E):- \+ t_l:sreader_options(with_text,true),!,phrase(file_sexpr(Out),S,E),!. +file_sexpr_with_comments(Out,S,E):- expr_with_text(Out,file_sexpr(O),O,S,E),!. + +prolog_expr_next--> dcg_peek(`:-`). +prolog_expr_next--> dcg_peek(read_string_until(S,(eol;`.`))),{atom_contains(S,':-')}. +prolog_expr_next--> dcg_peek(`.{`). + +prolog_readable_term(Expr) --> `.`,prolog_readable_term(Read), {arg(1,Read,Expr),!}. +prolog_readable_term(Expr,S,E):- + notrace(catch((read_term_from_codes(S,Expr,[subterm_positions(FromTo),cycles(true), module( baseKB), + double_quotes(string), + comments(CMT), variable_names(Vars)]),implode_threse_vars(Vars), + arg(2,FromTo,To), length(TermCodes,To), + append(TermCodes,Remaining,S), + `.`=[Dot],(Remaining=[Dot|E]/*;Remaining=E*/),!, + must(record_plterm_comments(CMT))),_,fail)). +record_plterm_comments(L):- is_list(L),!,maplist(record_plterm_comments,L). +record_plterm_comments(_-CMT):- assert(t_l:s_reader_info(CMT)). + + +% in Cyc there was a fitness heuristic that every time an logical axiom had a generated a unique consequent it was considered to have utility as it would expand the breadth of a search .. the problem often was those consequents would feed a another axiom's antecedant where that +:- asserta((system:'$and'(X,Y):- (X,Y))). + +%expr_with_text(Out,DCG,O,S,E):- +% call(DCG,S,E) -> append(S,Some,E) -> get_sexpr_with_comments(O,Some,Out,S,E),!. + +get_sexpr_with_comments(O,_,O,_,_):- compound(O),functor(O,'$COMMENT',_),!. +get_sexpr_with_comments(O,Txt,with_text(O,Str),S,_E):-append(Txt,_,S),!,text_to_string(Txt,Str). +%file_sexpr_with_comments(O,with_text(O,Txt),S,E):- copy_until_tail(S,Copy),text_to_string_safe(Copy,Txt),!. + + +file_sexpr(end_of_file) --> file_eof,!. +% WANT? +file_sexpr(O) --> sblank,!,file_sexpr(O),!. +% file_sexpr(planStepLPG(Name,Expr,Value)) --> swhite,sym_or_num(Name),`:`,swhite, sexpr(Expr),swhite, `[`,sym_or_num(Value),`]`,swhite. % 0.0003: (PICK-UP ANDY IBM-R30 CS-LOUNGE) [0.1000] +% file_sexpr(Term,Left,Right):- eoln(EOL),append(LLeft,[46,EOL|Right],Left),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. +% file_sexpr(Term,Left,Right):- append(LLeft,[46|Right],Left), ( \+ member(46,Right)),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. +file_sexpr(Expr) --> sexpr(Expr),!. +% file_sexpr(Expr,H,T):- lisp_dump_break,rtrace(phrase(file_sexpr(Expr), H,T)). +/* +file_sexpr(Expr) --> {fail}, + sexpr_lazy_list_character_count(Location,Stream), + {break, + seek(Stream,Location,bof,_), + read_clause(Stream,Expr,[cycles(true),double_quotes(string),variable_names(Vars)]), + implode_threse_vars(Vars)},!. + +file_sexpr(Expr) --> sexpr(Expr),!. + +file_sexpr(end_of_file) --> []. +*/ +% file_sexpr('$ERROR'(S_EOF)) --> read_until_eof_e(Unitl_EOF),!,{sformat(S_EOF,'~s',[Unitl_EOF])}. +% read_until_eof_e(Unitl_EOF,S,E):- append(S,E,Unitl_EOF),break,is_list(Unitl_EOF),!. + +%read_dispatch(E,[Disp,Char|In],Out):- read_dispatch_char([Disp,Char],E,In,Out). +read_dispatch(E,[DispatCH|In],Out):- read_dispatch_char([DispatCH],E,In,Out). + +read_dispatch_char(DispatCH,Form,In,Out):- sread_dyn:plugin_read_dispatch_char(DispatCH,Form,In,Out),!. +% read_dispatch_char(`@`,Form,In,Out):- phrase(sexpr(Form), In, Out),!. + +read_dispatch_error(Form,In,Out):- trace, dumpST,trace_or_throw((read_dispatch_error(Form,In,Out))). + + + + +:- multifile(sread_dyn:plugin_read_dispatch_char/4). +:- dynamic(sread_dyn:plugin_read_dispatch_char/4). + +:- use_module(library(dcg/basics)). + +% #x Hex +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),(phrase((`-`,dcg_basics:xinteger(FormP)), In, Out)),!,Form is -FormP. + +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),!,zalwayzz(phrase(dcg_basics:xinteger(Form), In, Out)),!. + +% #B Binary +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Bb`),!,phrase(signed_radix_2(2,Form), In, Out),!. + +% #O Octal +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Oo`),!,phrase(signed_radix_2(8,Form), In, Out),!. + +signed_radix_2(W,V)--> signed_radix_2_noext(W,Number),extend_radix(W,Number,V). + +signed_radix_2_noext(W,Number) --> `-`,!,unsigned_radix_2(W,NumberP),{Number is - NumberP },!. +signed_radix_2_noext(W,Number) --> `+`,!,unsigned_radix_2(W,Number). +signed_radix_2_noext(W,Number) --> unsigned_radix_2(W,Number). + +unsigned_radix_2(W,Number) --> radix_digits(W,Xs),!,{mkvar_w(Xs,W,Number)},!. + + +radix(Radix)-->`#`,integer(Radix),ci(`r`). +radix(16)-->`#`,ci(`X`). +radix(8)-->`#`,ci(`O`). +radix(2)-->`#`,ci(`B`). + +signed_radix_number(V)--> radix(Radix),!,signed_radix_2(Radix,V). +unsigned_radix_number(V)--> radix(Radix),!,unsigned_radix_2(Radix,V). + +extend_radix(Radix,Number0,'$RATIO'(Number0,Number1)) --> `/`,unsigned_radix_2(Radix,Number1). +%extend_radix(Radix,Number0,'/'(NumberB,Number1)) --> `.`,radix_number(Radix,Number1),{NumberB is (Number0*Number1)+1},!. +%extend_radix(Radix,Number0,'/'(NumberB,NumberR)) --> `.`,radix_number(Radix,Number1),{NumberR is Number1 * Radix, NumberB is (Number0*Number1)+1},!. +extend_radix(_Radix,Number,Number) --> []. + +radix_digits(OF,[X|Xs]) --> xdigit(X),{X alpha_to_lower(C),{X is C - 87,X []. + + + +mkvar_w([W0|Weights], Base, Val) :- + mkvar_w(Weights, Base, W0, Val). + +mkvar_w([], _, W, W). +mkvar_w([H|T], Base, W0, W) :- + W1 is W0*Base+(H), + mkvar_w(T, Base, W1, W). + + +ci([])--> !, []. +ci([U|Xs]) --> {to_lower(U,X)},!,alpha_to_lower(X),ci(Xs). + + +remove_optional_char(S)--> S,!. +remove_optional_char(_)-->[]. + +implode_threse_vars([N='$VAR'(N)|Vars]):-!, implode_threse_vars(Vars). +implode_threse_vars([]). + +ugly_sexpr_cont('$OBJ'([S|V])) --> rsymbol_maybe(``,S), sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> read_string_until_pairs(VS,`>`), swhite,{parse_sexpr_ascii_as_list(VS,V)},!. +ugly_sexpr_cont('$OBJ'(sugly,S)) --> read_string_until(S,`>`), swhite,!. + +%% sexpr(L)// is det. +% + +%sexpr(L) --> sblank,!,sexpr(L),!. +%sexpr(_) --> `)`,!,{trace,break,throw_reader_error(": an object cannot start with #\\)")}. +sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(wdmsg(sexpr(X))))),!. +%sexpr(X,H,T):- zalwayzz(sexpr0(X,H,T)),!,swhite. +is_common_lisp:- fail. + +sexpr0(L) --> sblank,!,sexpr(L),!. +sexpr0(L) --> `(`, !, swhite, zalwayzz(sexpr_list(L)),!, swhite. +sexpr0((Expr)) --> `.{`, read_string_until(S,`}.`), swhite, + {prolog_readable_term(Expr,S,_)}. + + +sexpr0(['#'(quote),E]) --> `'`, !, sexpr(E). +sexpr0(['#'(hbackquote),E]) --> {is_scm}, `#```, !, sexpr(E). +sexpr0(['#'(backquote),E]) --> ````, !, sexpr(E). +sexpr0(['#BQ-COMMA-ELIPSE',E]) --> `,@`, !, sexpr(E). +sexpr0(['#COMMA',E]) --> { is_common_lisp }, `,`, !, sexpr(E). +sexpr0(['#HCOMMA',E]) --> {is_scm}, `#,`, !, sexpr(E). +sexpr0('$OBJ'(claz_bracket_vector,V)) --> `[`, sexpr_vector(V,`]`),!, swhite. + +% MeTTA/NARS % sexpr0('#'(A)) --> `|`, !, read_string_until(S,`|`), swhite,{quietly_sreader(((atom_string(A,S))))}. + +% maybe this is KIF +sexpr0('?'(E)) --> {kif_ok}, `?`, dcg_peek(([C],{sym_char(C)})),!, rsymbol(``,E), swhite. +% @TODO if KIF sexpr('#'(E)) --> `&%`, !, rsymbol(`#$`,E), swhite. + +sexpr0('$STRING'(S)) --> s_string(S),!. + +/******** BEGIN HASH ************/ + +sexpr0('#') --> `#`, swhite,!. +sexpr0('#\\'(35)) --> `#\\#`,!, swhite. +sexpr0(E) --> `#`,read_dispatch(E),!. + + +%sexpr('#\\'(C)) --> `#\\`,ci(`u`),!,remove_optional_char(`+`),dcg_basics:xinteger(C),!. +%sexpr('#\\'(C)) --> `#\\`,dcg_basics:digit(S0), swhite,!,{atom_codes(C,[S0])}. +sexpr0('#\\'(32)) --> `#\\ `,!. +sexpr0('#\\'(C)) --> `#\\`,!,zalwayzz(rsymbol(``,C)), swhite. + +%sexpr(['#-',K,Out]) --> `#-`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. +%sexpr(['#+',K,Out]) --> `#+`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. + +sexpr0(['#-',K,O]) --> `#-`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. +sexpr0(['#+',K,O]) --> `#+`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. + +:- if(is_wam_cl). + sexpr0(P) --> `#`,ci(`p`),!,zalwayzz((sexpr(C),{f_pathname(C,P)})),!. +:- endif. +sexpr0('$S'(C)) --> (`#`, ci(`s`),`(`),!,zalwayzz(sexpr_list(C)),swhite,!. +%sexpr('$COMPLEX'(R,I)) --> `#`,ci(`c`),`(`,!, lnumber(R),lnumber(I),`)`. +sexpr0('$COMPLEX'(R,I)) --> (`#`, ci(`c`),`(`),!,zalwayzz(sexpr_list([R,I])),swhite,!. +sexpr0('$OBJ'(claz_bitvector,C)) --> `#*`,radix_digits(2,C),swhite,!. + +sexpr0(function(E)) --> `#\'`, sexpr(E), !. %, swhite. +sexpr0('$OBJ'(claz_vector,V)) --> `#(`, !, zalwayzz(sexpr_vector(V,`)`)),!, swhite,!. + +sexpr0(Number) --> `#`,integer(Radix),ci(`r`),!,zalwayzz((signed_radix_2(Radix,Number0),extend_radix(Radix,Number0,Number))),!. +sexpr0('$ARRAY'(Dims,V)) --> `#`,integer(Dims),ci(`a`),!,sexpr(V). +sexpr0(V) --> `#.`, !,sexpr(C),{to_untyped(C,UTC),!,intern_and_eval(UTC,V)},!. +sexpr0('#'(E)) --> `#:`, !,zalwayzz(rsymbol(`#:`,E)), swhite. + +sexpr0(OBJ)--> `#<`,!,zalwayzz(ugly_sexpr_cont(OBJ)),!. + +% @TODO if CYC sexpr('#'(E)) --> `#$`, !, rsymbol(`#$`,E), swhite. +% @TODO if scheme sexpr('#'(t)) --> `#t`, !, swhite. +% @TODO if schemesexpr('#'(f)) --> `#f`, !, swhite. + +% sexpr(E) --> `#`,read_dispatch_error(E). + +/*********END HASH ***********/ + +sexpr0(E) --> sym_or_num(E), swhite,!. +sexpr0(Sym) --> `#`,integer(N123), swhite,!, {atom_concat('#',N123,Sym)}. +sexpr0(C) --> s_line_metta(C) ,swhite, !. %s_line_metta(C), !. +sexpr0(C) --> s_item_metta(C, e_o_s), swhite. %s_line_metta(C), !. +sexpr0(E) --> !,zalwayzz(sym_or_num(E)), swhite,!. + +is_scm:- fail. + +% c:/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/guile/module/ice-9/and-let-star.scm + +priority_symbol((`|-`)). +priority_symbol((`#=`)). +priority_symbol((`#+`)). +priority_symbol((`#-`)). +priority_symbol((`#false`)). +priority_symbol((`#true`)). +priority_symbol((`#nil`)). +priority_symbol((`#null`)). +priority_symbol((`#f`)). +priority_symbol((`#;`)):- is_scm. +priority_symbol((`#t`)). +priority_symbol((`+1+`)). +priority_symbol((`+1-`)). +priority_symbol((`-#+`)). +priority_symbol((`-1+`)). +priority_symbol((`-1-`)). +priority_symbol((`1+`)). +priority_symbol((`1-`)). + +sym_or_num('$COMPLEX'(L)) --> `#C(`,!, swhite, sexpr_list(L), swhite. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. + +sym_or_num((E)) --> lnumber(E),swhite,!. +sym_or_num(E) --> rsymbol_maybe(``,E),!. +%sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. + + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. +% sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + + +dcg_xor(DCG1,DCG2,S,E):- copy_term(DCG1,DCG1C),phrase(DCG1C,S,E),!, + (phrase(DCG2,S,[])->true;zalwayzz(DCG1C=DCG1)),!. +dcg_xor(_,DCG2,S,E):- phrase(DCG2,S,E),!. +%sblank --> [C], {var(C)},!. + +% sblank --> comment_expr(S,I,CP),!,{assert(t_l:s_reader_info('$COMMENT'(S,I,CP)))},!,swhite. +sblank --> comment_expr(CMT),!,{assert(t_l:s_reader_info(CMT))},!,swhite. +sblank --> [C], {nonvar(C),charvar(C),!,bx(C =< 32)},!,swhite. + +sblank_line --> eoln,!. +sblank_line --> [C],{bx(C =< 32)},!, sblank_line. + +s_string(Text) --> sexpr_string(Text). +s_string(Text) --> {kif_ok},`'`, !, zalwayzz(read_string_until(Text,`'`)),!. + + + +swhite --> sblank,!. +swhite --> []. + + +sexpr_lazy_list_character_count(Location, Stream, Here, Here) :- + sexpr_lazy_list_character_count(Here, Location, Stream). + +sexpr_lazy_list_character_count(Here, CharNo, Stream) :- + '$skip_list'(Skipped, Here, Tail), + ( attvar(Tail) + -> frozen(Tail, + pure_input:read_to_input_stream(Stream, _PrevPos, Pos, _List)), + stream_position_data(char_count, Pos, EndRecordCharNo), + CharNo is EndRecordCharNo - Skipped + ; Tail == [] + -> CharNo = end_of_file-Skipped + ; type_error(lazy_list, Here) + ). + + + +comment_expr('$COMMENT'(Expr,I,CP)) --> comment_expr_3(Expr,I,CP),!. + +comment_expr_3(T,N,CharPOS) --> {\+ kif_ok}, `#|`, !, my_lazy_list_location(file(_,_,N,CharPOS)),!, zalwayzz(read_string_until_no_esc(S,`|#`)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> `;`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> {kif_ok}, `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +% For Scheme +comment_expr_3(T,N,CharPOS) --> `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,`!#`)),!, + {text_to_string_safe(S,T)},!. + + +sexprs([H|T]) --> sexpr(H), !, sexprs(T). +sexprs([]) --> []. + + +:- export('//'(sexpr_list,1)). + + +peek_symbol_breaker_or_number --> dcg_peek([C]),{\+ sym_char(C),\+ char_type(C,digit)}. +peek_symbol_breaker --> dcg_peek([C]),{\+ sym_char(C)}. +peek_symbol_breaker --> one_blank. + +sexpr_list(X) --> one_blank,!,sexpr_list(X). +sexpr_list([]) --> `)`, !. +%sexpr_list(_) --> `.`, [C], {\+ sym_char(C)}, {fail}. +sexpr_list([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_rest([]) --> `)`, !. +% allow dotcons/improper lists.. but also allow dot in the middle of the list (non-CL) +sexpr_rest(E) --> `.`, [C], {\+ sym_char(C)}, sexpr(E,C), `)` , ! . +sexpr_rest(E) --> {kif_ok}, `@`, rsymbol(`?`,E), `)`. +sexpr_rest([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_vector(O,End) --> zalwayzz(sexpr_vector0(IO,End)),!,{zalwayzz(O=IO)}. + +sexpr_vector0(X) --> one_blank,!,sexpr_vector0(X). +sexpr_vector0([],End) --> End, !. +sexpr_vector0([First|Rest],End) --> sexpr(First), !, sexpr_vector0(Rest,End). + +%s_string_cont(Until,"") --> Until,!, swhite. +:- encoding(iso_latin_1). +sexpr_string(Text) --> `"`, !, zalwayzz(read_string_until(Text,`"`)),!. +sexpr_string(Text) --> `“`, !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> (`”`;`“`), !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> `#|`, !, zalwayzz(read_string_until(Text,`|#`)),!. +:- encoding(utf8). +%sexpr_string([C|S],End) --> `\\`,!, zalwayzz(escaped_char(C)),!, sexpr_string(S,End). +%sexpr_string([],End) --> End, !. +% sexpr_string([32|S]) --> [C],{eoln(C)}, sexpr_string(S). +%sexpr_string([C|S],End) --> [C],!,sexpr_string(S,End). + +rsymbol_chars([C1,C2|Rest]) --> [C1,C2], {priority_symbol([C1,C2|Rest])},Rest,!. +rsymbol_chars([C|S])--> [C], {sym_char(C)},!, sym_continue(S),!. +%rsymbol_cont(Prepend,E) --> sym_continue(S), {append(Prepend,S,AChars),string_to_atom(AChars,E)},!. + +rsymbol(Chars,E) --> rsymbol_chars(List), {append(Chars,List,AChars),string_to_atom(AChars,E)},!. + +rsymbol_maybe(Prepend,ES) --> rsymbol(Prepend,E),{maybe_string(E,ES)},!. + +maybe_string(E,ES):- nb_current('$maybe_string',t),!,text_to_string_safe(E,ES),!. +maybe_string(E,E). + +sym_continue([H|T]) --> [H], {sym_char(H)},!, sym_continue(T). +sym_continue([39]) --> `'`, peek_symbol_breaker,!. +sym_continue([]) --> peek_symbol_breaker,!. +sym_continue([]) --> []. + +string_vector([First|Rest]) --> sexpr(First), !, string_vector(Rest),!. +string_vector([]) --> [], !. + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + +lnumber(_)--> [C],{code_type(C,alpha)},!,{fail}. +lnumber(N)--> lnumber0(N),!. % (peek_symbol_breaker;[]). + +oneof_ci(OneOf,[C])--> {member(C,OneOf)},ci([C]). +dcg_and2(DCG1,DCG2,S,E) :- dcg_phrase(DCG1,S,E),!,dcg_phrase(DCG2,S,E),!. +dcg_each_call_cleanup(Setup,DCG,Cleanup,S,E) :- each_call_cleanup(Setup,dcg_phrase(DCG,S,E),Cleanup). +dcg_phrase(\+ DCG1,S,E):- !, \+ phrase(DCG1,S,E). +dcg_phrase(DCG1,S,E):- phrase(DCG1,S,E),!. + +dcg_not(DCG1,S,E) :- \+ dcg_phrase(DCG1,S,E). + +enumber(N)--> lnumber(L),!,{to_untyped(L,N)},!. + +/* +Format Minimum Precision Minimum Exponent Size +Short 13 bits 5 bits +Single 24 bits 8 bits +Double 50 bits 8 bits +Long 50 bits 8 bits +*/ + +float_e_type(`E`,claz_single_float). +float_e_type(`f`,claz_single_float). +float_e_type(`d`,claz_double_float). +float_e_type(`L`,claz_long_float). +float_e_type(`s`,claz_short_float). + +lnumber_exp('$EXP'(N,T,E))-->snumber_no_exp(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),{exp:float_e_type(TC,T)},!. +lnumber_exp('$EXP'(N,T,E))-->dcg_basics:integer(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),!,{float_e_type(TC,T)},!. + + +lnumber0(N) --> lnumber_exp(N),!. +lnumber0('$RATIO'(N,D)) --> sint(N),`/`,uint(D),!. +lnumber0(N) --> snumber_no_exp(N),!. +%lnumber0(N) --> dcg_basics:number(N),!. + + +snumber_no_exp(N)--> `-`,!,unumber_no_exp(S),{N is -S},!. +snumber_no_exp(N)--> `+`,!,unumber_no_exp(N),!. +snumber_no_exp(N)--> unumber_no_exp(N),!. +%snumber_no_exp(N)--> sint(N),!. + + +sint(N) --> signed_radix_number(N),!. +sint(N)--> `-`,!,uint(S),{N is -S},!. +sint(N)--> `+`,!,uint(N),!. +sint(N)--> uint(N),!. + +natural_int(_) --> dcg_not(dcg_basics:digit(_)),!,{fail}. +natural_int(N) --> dcg_basics:integer(N),!. + +digits_dot_digits --> natural_int(_),!,`.`,!,natural_int(_),!. + +unumber_no_exp(N) --> dcg_and2(digits_dot_digits,dcg_basics:float(N)),!. +unumber_no_exp(N) --> `.`,!,dcg_basics:digit(S0),!,dcg_basics:digits(S),{(notrace_catch_fail(number_codes(N,[48,46,S0|S])))},!. +unumber_no_exp(N)--> natural_int(E),`.`,natural_int(S),{(notrace_catch_fail(number_codes(ND,[48,46|S]))),N is ND + E},!. +unumber_no_exp(N) --> natural_int(N),!,remove_optional_char(`.`),!. + +uint(N) --> unsigned_radix_number(N),!. +uint(N) --> natural_int(N),!,remove_optional_char(`.`),!. + + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + + +%= + +%% sexpr( ?E, ?C, ?X, ?Z) is det. +% +% S-Expression. +% +sexpr(E,C,X,Z) :- swhite([C|X],Y), sexpr(E,Y,Z),!. + +% dquote semicolon parens hash qquote comma backquote + +%= + +%% sym_char( ?C) is det. +% +% Sym Char. (not ";()#',` +% ) +% + +sym_char(C):- bx(C =< 32),!,fail. +%sym_char(44). % allow comma in middle of symbol +sym_char(C):- memberchk(C,`"()```),!,fail. % maybe 44 ? comma maybe not # or ; ? ' +%sym_char(C):- nb_current('$maybe_string',t),memberchk(C,`,.:;!%`),!,fail. +sym_char(_):- !. + +sym_char_start(C):- C\==44,C\==59,sym_char(C). + + + +:- thread_initialization(nb_setval('$maybe_string',[])). + +:- thread_local(t_l:s2p/1). +:- thread_local(t_l:each_file_term/1). + + + +%= + +%% to_unbackquote( ?I, ?O) is det. +% +% Converted To Unbackquote. +% +to_unbackquote(I,O):-to_untyped(I,O),!. + +:- export(to_untyped/2). + + +%atom_or_string(X):- (atom(X);string(X)),!. +as_keyword(C,K):- atom(C),!,(atom_concat_or_rtrace(':',_,C)->K=C;atom_concat_or_rtrace(':',C,K)),!. +as_keyword(C,C):- \+compound(C),!. +as_keyword([A|B],[AK|BK]):- !, as_keyword(A,AK),as_keyword(B,BK),!. +as_keyword(C,C). + + +%% to_untyped( :TermVar, :TermName) is det. +% +% Converted To Untyped. +% +to_untyped(S,S):- var(S),!. +to_untyped(S,S):- is_dict(S),!. +to_untyped([],[]):-!. +to_untyped('#-'(C,I),'#-'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('#+'(C,I),'#+'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('?'(S),_):- S=='??',!. +% to_untyped('?'(S),'$VAR'('_')):- S=='??',!. +% to_untyped(VAR,NameU):-atom(VAR),atom_concat_or_rtrace('#$',NameU,VAR),!. +to_untyped(VAR,NameU):-atom(VAR),(atom_concat_or_rtrace(N,'.',VAR)->true;N=VAR),(notrace_catch_fail(atom_number(N,NameU))),!. +%to_untyped(S,s(L)):- string(S),atom_contains(S,' '),atomic_list_concat(['(',S,')'],O),parse_sexpr_string(O,L),!. +to_untyped(S,S):- string(S),!. +to_untyped(S,S):- number(S),!. +%to_untyped(S,O):- atom(S),notrace_catch_fail(atom_number(S,O)),!. +to_untyped(Var,'$VAR'(Name)):-svar(Var,Name),!. +to_untyped('?'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped(Atom,Atom):- \+ compound(Atom),!. +to_untyped('@'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped('#'(S),O):- !, (nonvar(S)->to_untyped(S,O) ; O='#'(S)). +to_untyped('$CHAR'(S),C):-!,to_untyped('#\\'(S),C),!. +to_untyped('#\\'(S),C):-to_char(S,C),!. +to_untyped('#\\'(S),'#\\'(S)):-!. +to_untyped('$OBJ'([FUN, F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'([FUN| F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'(S),'$OBJ'(O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Type,O)):- text_to_string_safe(Ungly,Str),string_to_atom(Str,Type),to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Ungly,O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),O):-to_untyped(S,SO),!,O=..[Ungly,SO]. +to_untyped('$COMPLEX'(N0,D0),N):- to_untyped(D0,D), notrace_catch_fail(( 0 =:= D)),to_untyped(N0,N). +to_untyped('$RATIO'(N0,D0),V):- to_untyped(N0,N),to_untyped(D0,D), notrace_catch_fail(( 0 is N mod D, V is N div D)). +to_untyped('$NUMBER'(S),O):-nonvar(S),to_number(S,O),to_untyped(S,O),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_short_float,S)):- float(S),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_bignum,S)). +to_untyped('$EXP'(I,'E',E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,claz_single_float,E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,T,E),'$NUMBER'(T,N)):- (notrace_catch_fail(N is (I * 10^E))),!. +to_untyped('$EXP'(I,T,E),'$EXP'(I,T,E)):-!. + +to_untyped(with_text(I,_Txt),O):-to_untyped(I,O),!. +to_untyped(with_text(I,Txt),with_text(O,Txt)):-to_untyped(I,O),!. + +% to_untyped([[]],[]):-!. +to_untyped('$STR'(Expr),Forms):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped('$STRING'(Expr),'$STRING'(Forms)):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped(['#'(Backquote),Rest],Out):- is_common_lisp, Backquote == backquote, !,to_untyped(['#'('#BQ'),Rest],Out). +to_untyped(['#'(S)|Rest],OOut):- nonvar(S), is_list(Rest),must_maplist(to_untyped,[S|Rest],[F|Mid]), + ((atom(F),t_l:s2p(F))-> Out=..[F|Mid];Out=[F|Mid]), + to_untyped(Out,OOut). +to_untyped(ExprI,ExprO):- ExprI=..[F|Expr],atom_concat_or_rtrace('$',_,F),!,must_maplist(to_untyped,Expr,TT),ExprO=..[F|TT]. + +% to_untyped([H|T],Forms):-is_list([H|T]),zalwayzz(text_to_string_safe([H|T],Forms);maplist(to_untyped,[H|T],Forms)). +to_untyped([H|T],[HH|TT]):-!,zalwayzz((to_untyped(H,HH),!,to_untyped(T,TT))). +to_untyped(ExprI,ExprO):- zalwayzz(ExprI=..Expr), + must_maplist(to_untyped,Expr,[HH|TT]),(atom(HH)-> ExprO=..[HH|TT] ; ExprO=[HH|TT]),!. +% to_untyped(Expr,Forms):-def_compile_all(Expr,Forms),!. + +to_number(S,S):-number(S),!. +to_number(S,N):- text_to_string_safe(S,Str),number_string(N,Str),!. + + +to_char(S,'#\\'(S)):- var(S),!. +to_char('#'(S),C):- !, to_char(S,C). +to_char('#\\'(S),C):- !, to_char(S,C). +to_char(S,C):- atom(S),atom_concat('^',SS,S),upcase_atom(SS,SU),atom_codes(SU,[N64]),N is N64-64,N>=0,!,to_char(N,C). +to_char(S,C):- atom(S),atom_codes(S,[N]),!,to_char(N,C). +to_char(N,C):- text_to_string_safe(N,Str),name_to_charcode(Str,Code),to_char(Code,C),!. +%to_char(N,'#\\'(S)):- to_number(N,NC),!,char_code_to_char(NC,S),!. +to_char(N,'#\\'(S)):- integer(N),!,char_code_to_char(N,S),!. +to_char(N,'#\\'(N)). + +char_code_int(Char,Code):- notrace_catch_fail(char_code(Char,Code)),!. +char_code_int(Char,Code):- notrace_catch_fail(atom_codes(Char,[Code])),!. +char_code_int(Char,Code):- atom(Char),name_to_charcode(Char,Code),!. +char_code_int(Char,Code):- var(Char),!,wdmsg(char_code_int(Char,Code)), only_debug(break). +char_code_int(Char,Code):- wdmsg(char_code_int(Char,Code)),only_debug(break). + +char_code_to_char(N,S):- atom(N),atom_codes(N,[_]),!,S=N. +char_code_to_char(N,S):- atom(N),!,S=N. +%char_code_to_char(N,S):- code_type(N,graph),atom_codes(S,[N]),atom(S),!. +%char_code_to_char(N,O):- \+ integer(N),char_type(N,_),!,N=O. +%char_code_to_char(32,' '):-!. +%char_code_to_char(N,N):- \+ code_type(N,graph),!. +%char_code_to_char(N,N):- code_type(N,white),!. +char_code_to_char(N,S):- notrace_catch_fail(atom_codes(S,[N])),!. + + + +name_to_charcode(Str,Code):-find_from_name(Str,Code),!. +name_to_charcode(Str,Code):-text_upper(Str,StrU),find_from_name2(StrU,Code). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1,H2,H3,H4|HEX]),memberchk(S,`Uu`),char_type(H4,xdigit(_)), + notrace_catch_fail(read_from_codes([48, 120,H1,H2,H3,H4|HEX],Code)). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1|BASE10]),memberchk(S,`nd`),char_type(H1,digit), + notrace_catch_fail(read_from_codes([H1|BASE10],Code)). + +find_from_name(Str,Code):-string_codes(Str,Chars),lisp_code_name_extra(Code,Chars). +find_from_name(Str,Code):-lisp_code_name(Code,Str). +find_from_name(Str,Code):-string_chars(Str,Chars),lisp_code_name(Code,Chars). + +make_lisp_character(I,O):-quietly(to_char(I,O)). + +f_code_char(CH,CC):- zalwayzz(to_char(CH,CC)),!. +f_name_char(Name,CC):- zalwayzz((def_to_prolog_string(Name,CH),name_to_charcode(CH,Code),to_char(Code,CC))). +f_char_name(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz(code_to_name(CH,CC)). +f_char_int(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz('#\\'(C)=CH),(integer(C)->CC=C;char_code_int(C,CC)). +f_char_code(CH,CC):- f_char_int(CH,CC). + +to_prolog_char('#\\'(X),O):-!,to_prolog_char(X,O). +to_prolog_char(Code,Char):- number(Code),!,zalwayzz(char_code_int(Char,Code)),!. +%to_prolog_char(S,S):- atom(S),char_type(S,_),!. +to_prolog_char(Atom,Char):- name(Atom,[C|Odes]),!, + ((Odes==[] -> char_code_int(Char,C); + zalwayzz((text_to_string(Atom,String),name_to_charcode(String,Code),char_code_int(Char,Code))))). + +code_to_name(Char,Str):- number(Char),Char=Code,!,zalwayzz((code_to_name0(Code,Name),!,text_to_string(Name,Str))). +code_to_name(Char,Str):- zalwayzz((to_prolog_char(Char,PC),char_code_int(PC,Code),code_to_name0(Code,Name),!,text_to_string(Name,Str))). + +code_to_name0(Code,Name):-lisp_code_name_extra(Code,Name). +code_to_name0(Code,Name):-lisp_code_name(Code,Name). +code_to_name0(Code,Name):- Code<32, Ascii is Code+64,atom_codes(Name,[94,Ascii]). +code_to_name0(Code,Name):- code_type(Code,graph),!,atom_codes(Name,[Code]). + + +find_from_name2(Str,Code):-find_from_name(Str,Code). +find_from_name2(Str,Code):-lisp_code_name(Code,Chars),text_upper(Chars,Str). +find_from_name2(Str,Code):-lisp_code_name_extra(Code,Chars),text_upper(Chars,Str). + +text_upper(T,U):-text_to_string_safe(T,S),string_upper(S,U). + +lisp_code_name_extra(0,`Null`). +lisp_code_name_extra(1,`Soh`). +lisp_code_name_extra(2,`^B`). +lisp_code_name_extra(7,`Bell`). +lisp_code_name_extra(7,`bell`). +lisp_code_name_extra(8,`BCKSPC`). +lisp_code_name_extra(10,`Newline`). +lisp_code_name_extra(10,`LF`). +lisp_code_name_extra(10,`Linefeed`). +lisp_code_name_extra(11,`Vt`). +lisp_code_name_extra(27,`Escape`). +lisp_code_name_extra(27,`Esc`). +lisp_code_name_extra(32,`Space`). +lisp_code_name_extra(28,`fs`). +lisp_code_name_extra(13,`Ret`). + + +% @TODO undo this temp speedup +:- set_prolog_flag(all_lisp_char_names,false). +:- use_module('chars.data'). +/* + +(with-open-file (strm "lisp_code_names.pl" :direction :output :if-exists :supersede :if-does-not-exist :create) + (format strm ":- module(lisp_code_names,[lisp_code_name/2]).~%:- set_prolog_flag(double_quotes,chars).~%~%") + (loop for i from 0 to 655360 do (let ((cname (char-name (code-char i))) (uname4 (format () "U~4,'0X" i)) (uname8 (format () "U~8,'0X" i))) + (unless (equal cname uname4) (unless (equal cname uname8) (format strm "lisp_code_name(~A,~S).~%" i cname )))))) +*/ + + +%% remove_incompletes( :TermN, :TermCBefore) is det. +% +% Remove Incompletes. +% +remove_incompletes([],[]). +remove_incompletes([N=_|Before],CBefore):-var(N),!, + remove_incompletes(Before,CBefore). +remove_incompletes([NV|Before],[NV|CBefore]):- + remove_incompletes(Before,CBefore). + +:- export(extract_lvars/3). + +%= + +%% extract_lvars( ?A, ?B, ?After) is det. +% +% Extract Lvars. +% +extract_lvars(A,B,After):- + (get_varname_list(Before)->true;Before=[]), + remove_incompletes(Before,CBefore),!, + copy_lvars(A,CBefore,B,After),!. + +% copy_lvars( VAR,Vars,VAR,Vars):- var(VAR),!. + +%= + +%% copy_lvars( :TermVAR, ?Vars, :TermNV, ?NVars) is det. +% +% Copy Lvars. +% +copy_lvars(Term,Vars,Out,VarsO):- Term ==[],!,zalwayzz((Out=Term,VarsO=Vars)). +copy_lvars( VAR,Vars,Out,VarsO):- var(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars([H|T],Vars,[NH|NT],VarsO):- !, copy_lvars(H,Vars,NH,SVars),!, copy_lvars(T,SVars,NT,VarsO). +copy_lvars('?'(Inner),Vars,Out,VarsO):- !, copy_lvars(Inner,Vars,NInner,VarsO), zalwayzz((atom(NInner) -> atom_concat_or_rtrace('?',NInner,Out) ; Out = '?'(NInner))),!. +copy_lvars( VAR,Vars,Out,VarsO):- svar(VAR,Name)->zalwayzz(atom(Name)),!,zalwayzz(register_var(Name=Out,Vars,VarsO)). +copy_lvars( VAR,Vars,Out,VarsO):- \+ compound(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars(Term,Vars,NTerm,VarsO):- + Term=..[F|Args], % decompose term + (svar(F,_)-> copy_lvars( [F|Args],Vars,NTerm,VarsO); + % construct copy term + (copy_lvars(Args,Vars,NArgs,VarsO), NTerm=..[F|NArgs])),!. + + + +%= + +%% svar( ?Var, ?NameU) is det. +% +% If this is a KIF var, convert to a name for prolog +% +svar(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar(SVAR,UP)). +svar(Var,Name):- var(Var),!,zalwayzz(svar_fixvarname(Var,Name)). +svar('$VAR'(Var),Name):-number(Var),Var > -1, !, zalwayzz(format(atom(Name),'~w',['$VAR'(Var)])),!. +svar('$VAR'(Name),VarName):-!,zalwayzz(svar_fixvarname(Name,VarName)). +svar('?'(Name),NameU):-svar_fixvarname(Name,NameU),!. +svar(_,_):- \+ kif_ok,!,fail. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('?',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. +svar([],_):-!,fail. +svar('#'(Name),NameU):-!,svar(Name,NameU),!. +svar('@'(Name),NameU):-svar_fixvarname(Name,NameU),!. +% svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('_',_,VAR),svar_fixvarname(VAR,Name),!. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('@',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. + + +:- export(svar_fixvarname/2). + +%= + +%% svar_fixvarname( ?SVARIN, ?UP) is det. +% +% Svar Fixvarname. +% + +svar_fixvarname(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar_fixvarname(SVAR,UP)). +svar_fixvarname(SVAR,UP):- svar_fixname(SVAR,UP),!. +svar_fixvarname(SVAR,UP):- fail,trace_or_throw(svar_fixname(SVAR,UP)). + +svar_fixname(Var,NameO):-var(Var),!,variable_name_or_ref(Var,Name),sanity(nonvar(Name)),!,svar_fixvarname(Name,NameO). +svar_fixname('$VAR'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('@'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('?'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('block'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname(SVAR,SVARO):- ok_var_name(SVAR),!,SVARO=SVAR. +svar_fixname('??','_'):-!. +svar_fixname(QA,AU):-atom_concat_or_rtrace('??',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO),atom_concat_or_rtrace('_',AO,AU). +svar_fixname(QA,AO):-atom_concat_or_rtrace('?',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(QA,AO):-atom_concat_or_rtrace('@',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(NameU,NameU):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name),atom_number(Name,_),!. +svar_fixname(NameU,NameUO):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name), + \+ atom_number(Name,_),!,svar_fixvarname(Name,NameO),atom_concat_or_rtrace('_',NameO,NameUO). +svar_fixname(I,O):- + notrace(( + notrace(catch(fix_varcase(I,M0),_,fail)), + atom_subst(M0,'@','_AT_',M1), + atom_subst(M1,'?','_Q_',M2), + atom_subst(M2,':','_C_',M3), + atom_subst(M3,'-','_',O), + ok_var_name(O))),!. + +%= + +%% fix_varcase( ?I, ?O) is det. +% +% Fix Varcase. +% +fix_varcase(Word,Word):- atom_concat_or_rtrace('_',_,Word),!. +fix_varcase(Word,WordC):- !, atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +% the cut above stops the rest +fix_varcase(Word,Word):-upcase_atom(Word,UC),UC=Word,!. +fix_varcase(Word,WordC):-downcase_atom(Word,UC),UC=Word,!,atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +fix_varcase(Word,Word). % mixed case + +:- export(ok_varname_or_int/1). + +%% ok_varname_or_int( ?Name) is det. +% +% Ok Varname. +% +ok_varname_or_int(Name):- atom(Name),!,ok_var_name(Name). +ok_varname_or_int(Name):- number(Name). + +%% ok_var_name( ?Name) is det. +% +% Ok Varname. +% +ok_var_name(Name):- + notrace(( + quietly_sreader(( atom(Name),atom_codes(Name,[C|_List]),char_type(C,prolog_var_start), + notrace(catch(read_term_from_atom(Name,Term,[variable_names(Vs)]),_,fail)), + !,var(Term),Vs=[RName=RVAR],!,RVAR==Term,RName==Name)))). + +%:- export(ok_codes_in_varname/1). +%ok_codes_in_varname([]). +%ok_codes_in_varname([C|List]):-!,ok_in_varname(C),ok_codes_in_varname(List). + +%:- export(ok_in_varname/1). +%ok_in_varname(C):-sym_char(C),\+member(C,`!@#$%^&*?()`). + + + +%= + +%% atom_upper( ?A, ?U) is det. +% +% Atom Upper. +% +atom_upper(A,U):-string_upper(A,S),quietly_sreader(((atom_string(U,S)))). + + +%= + +%% lisp_read_from_input( ?Forms) is det. +% +% Lisp Read Converted From Input. +% +lisp_read_from_input(Forms):-lisp_read(current_input,Forms),!. + +readCycL(Forms):-lisp_read(current_input,Forms). + +%% lisp_read_from_stream( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read_from_stream(Input,Forms):- + lisp_read(Input,Forms). + + +%% lisp_read( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read(Input,Forms):- + lisp_read_typed(Input, Forms0),!, + quietly_sreader((zalwayzz(to_untyped(Forms0,Forms)))). + + + +%% lisp_read_typed( ?I, -Expr) is det. +% +% Lisp Read, Expression models DCG +% +lisp_read_typed(In,Expr):- track_stream(In,parse_sexpr(In,Expr)),!. +/* +lisp_read_typed(In,Expr):- fail, % old_stream_read + (read_line_to_codes(current_input,AsciiCodes), + (AsciiCodes==[]-> (at_end_of_stream(In) -> (Expr=end_of_file); lisp_read_typed(In,Expr)); + once(zalwayzz(parse_sexpr(AsciiCodes,Expr);lisp_read_typed(In,Expr));read_term_from_codes(AsciiCodes,Expr,[])))). +*/ + + +%= + +%% lowcase( :TermC1, :TermC2) is det. +% +% Lowcase. +% +lowcase([],[]). +lowcase([C1|T1],[C2|T2]) :- lowercase(C1,C2), lowcase(T1,T2). + + +%= + +%% lowercase( ?C1, ?C2) is det. +% +% Lowercase. +% +lowercase(C1,C2) :- C1 >= 65, C1 =< 90, !, C2 is C1+32. +lowercase(C,C). + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Interpretation + -------------- + + Declaratively, execution of a Lisp form is a relation between the + (function and variable) binding environment before its execution + and the environment after its execution. A Lisp program is a + sequence of Lisp forms, and its result is the sequence of their + results. The environment is represented as a pair of association + lists Fs-Vs, associating function names with argument names and + bodies, and variables with values. DCGs are used to implicitly + thread the environment state through. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + + +%= + +%% codelist_to_forms( ?AsciiCodesList, ?FormsOut) is det. +% +% Codelist Converted To Forms. +% +codelist_to_forms(AsciiCodesList,FormsOut):- + parse_sexpr(AsciiCodesList, Forms0),!, + zalwayzz(def_compile_all(Forms0, FormsOut)),!. + + +/* + +:- export(baseKB:rff/0). + +baseKB:rff:-baseKB:rff(dbginfo(n(first)),dbginfo(n(retry)),dbginfo(n(success)),dbginfo(n(failure))). + +:- export(baseKB:rff/4). +baseKB:rff(OnFirst,OnRetry,OnSuccess,OnFailure) :- CU = was(never,first), + call_cleanup(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + (nb_setarg(1,CU,first));((nb_setarg(1,CU,second)),!,fail)), + (nb_setarg(2,CU,second),process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure),dbginfo(cleanup(CU)))), + once(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + CU \= was(second, _))). + +:- export(process_rff/5). +process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure):- + dbginfo(next(CU)), + once(((CU==was(first,first)->OnFirst;true), + (CU==was(second,first)->OnRetry;true), + (CU==was(second,second)->OnFailure;true), + (CU==was(first,second)-e>OnSuccess;true))). + + +*/ + + +/* +:- prolog_load_context(directory,Dir), + DirFor = plarkc, + (( \+ user:file_search_path(DirFor,Dir)) ->asserta(user:file_search_path(DirFor,Dir));true), + absolute_file_name('../../../../',Y,[relative_to(Dir),file_type(directory)]), + (( \+ user:file_search_path(pack,Y)) ->asserta(user:file_search_path(pack,Y));true). +:- attach_packs. +:- initialization(attach_packs). +*/ + +% [Required] Load the Logicmoo Library Utils +% = % :- ensure_loaded(logicmoo(logicmoo_utils)). + +% % :- ensure_loaded(logicmoo(plarkc/mpred_cyc_api)). + + +:- export(fixvars/4). + +%= + +%% fixvars( ?P, ?VALUE2, :TermARG3, ?P) is det. +% +% Fixvars. +% +fixvars(P,_,[],P):-!. +fixvars(P,N,[V|VARS],PO):- + quietly_sreader((atom_string(Name,V))), + svar_fixvarname(Name,NB),Var = '$VAR'(NB), + substM(P,'$VAR'(N),Var,PM0), + substM(PM0,'$VAR'(Name),Var,PM), + % (get_varname_list(Vs)->true;Vs=[]), + % append(Vs,[Name=Var],NVs), + % nput_variable_names( NVs), + N2 is N + 1, fixvars(PM,N2,VARS,PO). + + + + +non_empty_atom(A1):- atom(A1),atom_length(A1,AL),!,AL>0. + +:- meta_predicate(sexpr_sterm_to_pterm(+,?,?)). +:- meta_predicate(sexpr_sterm_to_pterm_list(+,?,?)). + +is_relation_sexpr('=>'). +is_relation_sexpr('<=>'). +is_relation_sexpr('==>'). +is_relation_sexpr('<==>'). +is_relation_sexpr('not'). +is_relation_sexpr(typeGenls). + +is_va_relation('or'). +is_va_relation('and'). +%= + + +is_exact_symbol(N,_):- \+ atom(N),!,fail. +is_exact_symbol(N,P):- nonvar(P),!,is_exact_symbol(N,PP),zalwayzz(P=PP). +is_exact_symbol(':-',':-'). +is_exact_symbol('?-','?-'). +is_exact_symbol('??',_). + +%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). + +maybe_var(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. + +%% sexpr_sterm_to_pterm(?VAR, ?V) is det. +% +% S-expression Sterm Converted To Pterm. +% +sexpr_sterm_to_pterm(S,P):- sexpr_sterm_to_pterm(0,S,P). + + +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ compound(STERM), !. +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ is_list(STERM), !. +% sexpr_sterm_to_pterm_pre_list(_,[S|STERM],[S|STERM]):- STERM == [], !. +sexpr_sterm_to_pterm_pre_list(TD,[S0|STERM0],[S|STERM]):- + (is_list(S0)->sexpr_sterm_to_pterm(TD,S0,S);sexpr_sterm_to_pterm_pre_list(TD,S0,S)), + sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM). + +sexpr_sterm_to_pterm(_TD,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm(_TD,S,P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,'#'(S),P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. + +% sexpr_sterm_to_pterm(TD,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_var(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_sterm_to_pterm(TD,NewList,PTERM). +% sexpr_sterm_to_pterm(TD,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +/* +sexpr_sterm_to_pterm(TD,[S,Vars|TERM],PTERM):- nonvar(S), + call_if_defined(common_logic_snark:is_quantifier(S)), + zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST), + PTERM=..[S,Vars|PLIST])),!. +*/ + +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- var(S), TD1 is TD + 1, sexpr_sterm_to_pterm_pre_list(TD1,STERM0,STERM), sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. +sexpr_sterm_to_pterm(_,[S,STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(_,[S|STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), is_list(STERM), + next_args_are_lists_unless_string(S,NonList), + length(LEFT,NonList),append(LEFT,[List|RIGHT],STERM),is_list(List), + TD1 is TD+1, + sexpr_sterm_to_pterm_list(TD1,LEFT,PLEFTLIST), + sexpr_sterm_to_pterm_list(0,RIGHT,PRIGHTLIST), + append(PLEFTLIST,[List|PRIGHTLIST],PLIST), + s_univ(TD,PTERM,[S|PLIST]),!. + +sexpr_sterm_to_pterm(TD,STERM0,PTERM):- TD1 is TD+1,sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), + is_list(STERM),!, sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,PLIST),!. +sexpr_sterm_to_pterm(_TD,VAR,VAR). + +is_quoter('#BQ'):- is_common_lisp. +is_quoter('#COMMA'):- is_common_lisp. +is_quoter('quote'). + +next_args_are_lists_unless_string(defmacro,1). +next_args_are_lists_unless_string(defun,1). +next_args_are_lists_unless_string(let,0). +next_args_are_lists_unless_string('let*',0). + +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S],O):- is_ftVar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S],O):- nonvar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_ftVar(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- S==and,!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +% sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_va_relation(S),!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_relation_sexpr(S),zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST),PTERM=..[S|PLIST])),!. +%sexpr_sterm_to_pterm(TD,STERM,PTERM):- STERM=..[S|TERM],sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. + +s_functor(F):- \+ atom(F), !,fail. +s_functor(F):- \+ atom_concat('?',_,F). + +s_univ(1,S,S):-!. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),length(ARGS,A),l_arity(F,A),P=..[F|ARGS]. +s_univ(0,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,S):-P=S. + +l_arity(F,A):- clause_b(arity(F,A)). +l_arity(function,1). +l_arity(quote,1). +l_arity('#BQ',1):- is_common_lisp. +l_arity(F,A):-current_predicate(F/A). +l_arity(_,1). + +%% sexpr_sterm_to_pterm_list(TD, ?VAR, ?VAR) is det. +% +% S-expression Converted To Pterm List. +% + +sexpr_sterm_to_pterm_list(TD,TERM,PTERMO):- is_list(TERM),append(BEFORE,[VAR],TERM),atom(VAR), + atom_concat_or_rtrace('@',RVAR,VAR),non_empty_atom(RVAR),svar_fixvarname(RVAR,V),!,append(BEFORE,'$VAR'(V),PTERM), + sexpr_sterm_to_pterm_list0(TD,PTERM,PTERMO). +sexpr_sterm_to_pterm_list(TD,TERM,PTERM):- sexpr_sterm_to_pterm_list0(TD,TERM,PTERM). + +sexpr_sterm_to_pterm_list0(_,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm_list0(_,[],[]):-!. +sexpr_sterm_to_pterm_list0(TD,[S|STERM],[P|PTERM]):-sexpr_sterm_to_pterm(TD,S,P),sexpr_sterm_to_pterm_list0(TD,STERM,PTERM),!. +sexpr_sterm_to_pterm_list0(_,VAR,VAR). + + +/*=================================================================== +% input_to_forms/3 does less consistancy checking then conv_to_sterm + +Always a S-Expression: 'WFFOut' placing variables in 'VARSOut' + +|?-input_to_forms(`(isa a b)`,Clause,Vars). +Clause = [isa,a,b] +Vars = _h70 + +| ?- input_to_forms(`(isa a (b))`,Clause,Vars). +Clause = [isa,a,[b]] +Vars = _h70 + +|?-input_to_forms(`(list a b )`,Clause,Vars) +Clause = [list,a,b] +Vars = _h70 + +?- input_to_forms_debug("(=> (isa ?NUMBER ImaginaryNumber) (exists (?REAL) (and (isa ?REAL RealNumber) (equal ?NUMBER (MultiplicationFn ?REAL (SquareRootFn -1))))))"). + +?- input_to_forms_debug("(=> (isa ?PROCESS DualObjectProcess) (exists (?OBJ1 ?OBJ2) (and (patient ?PROCESS ?OBJ1) (patient ?PROCESS ?OBJ2) (not (equal ?OBJ1 ?OBJ2)))))"). + + +| ?- input_to_forms(`(genlMt A ?B)`,Clause,Vars). +Clause = [genlMt,'A',_h998] +Vars = [=('B',_h998)|_h1101] + +| ?- input_to_forms(` + (goals Iran (not (exists (?CITIZEN) + (and (citizens Iran ?CITIZEN) (relationExistsInstance maleficiary ViolentAction ?CITIZEN)))))` + ). + +Clause = [goals,Iran,[not,[exists,[_h2866],[and,[citizens,Iran,_h2866],[relationExistsInstance,maleficiary,ViolentAction,_h2866]]]]] +Vars = [=(CITIZEN,_h2866)|_h3347] + +| ?- input_to_forms_debug(` +(queryTemplate-Reln QuestionTemplate definitionalDisplaySentence + (NLPatternList + (NLPattern-Exact "can you") + (RequireOne + (NLPattern-Word Acquaint-TheWord Verb) + (NLPattern-Word Tell-TheWord Verb)) + (RequireOne + (NLPattern-Exact "me with") + (NLPattern-Exact "me what")) + (OptionalOne + (WordSequence "the term") "a" "an") + (NLPattern-Template NPTemplate :THING) + (OptionalOne "is" ) + (OptionalOne TemplateQuestionMarkMarker)) + (definitionalDisplaySentence :THING ?SENTENCE)) ` +). + +| ?- input_to_forms_debug(` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2))` + ). + +input_to_forms_debug("(=> (disjointDecomposition ?CLASS @ROW) (forall (?ITEM1 ?ITEM2) (=> (and (inList ?ITEM1 (ListFn @ROW)) (inList ?ITEM2 (ListFn @ROW)) (not (equal ?ITEM1 ?ITEM2))) (disjoint ?ITEM1 ?ITEM2))))"). + + +input_to_forms_debug( +` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2)) ` + ). + +% txt_to_codes("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X). +input_to_forms_debug("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X,Y). + +// ==================================================================== */ +:- export(current_input_to_forms/2). + + +%% input_to_forms( ?FormsOut, ?Vars) is det. +% +% Input Converted To Forms. +% +current_input_to_forms(FormsOut,Vars):- + current_input(In), + input_to_forms(In, FormsOut,Vars). + +show_wff_debug(Wff,Vs):- nonvar(Wff),Wff=(H=B),!,show_wff_debug((H:-B),Vs). +show_wff_debug(Wff,Vs):- fmt("\n"), + must_or_rtrace(portray_clause_w_vars(Wff,Vs,[])),!. + +% input_to_forms_debug(String):- sumo_to_pdkb(String,Wff),dbginfo(Wff),!. +input_to_forms_debug(String):- + input_to_forms_debug(String,['=']). + +input_to_forms_debug(String,M:Decoders):- + setup_call_cleanup( + fmt("% ========================\n"), + (get_varnames(Was), show_wff_debug(input=String,Was), + input_to_forms(String,Wff,Vs), + b_setval('$variable_names',Vs), + show_wff_debug(to_forms=Wff,Vs), + do_decoders(Wff,Vs,M,Decoders),!, + ignore((nonvar(Vs),Vs\==[], show_wff_debug(vars=Vs,Vs)))), + fmt("\n% ========================\n")). + +do_decoders(_,_,_,[]):-!. +do_decoders(Wff,Vs,M,[Decoder|Decoders]):- !, + ((M:call(Decoder,Wff,WffO), ignore((Wff \== WffO , show_wff_debug((M:Decoder:-WffO),Vs)))) + -> do_decoders(WffO,Vs,M,Decoders) + ; + (fmt(decoder_failed(M:Decoder)), + do_decoders(Wff,Vs,M,Decoders))). +do_decoders(Wff,Vs,M,Decoder):- do_decoders(Wff,Vs,M,[Decoder]). + +:- export(input_to_forms/2). +%% input_to_forms( ?In, ?FormsOut) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut):- + input_to_forms(Codes,FormsOut,Vars) -> + add_variable_names(Vars). + +:- export(input_to_forms/3). + +%% input_to_forms( ?In, ?FormsOut, ?Vars) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut,Vars):- + push_varnames(_) -> + quietly_sreader((input_to_forms0(Codes,FormsOut,Vars))). + +is_variable_names_safe(Vars):- var(Vars),!. +is_variable_names_safe([N=V|Vars]):- !, + is_name_variable_safe(N,V) -> + is_variable_names_safe(Vars). +is_variable_names_safe([]). + +is_name_variable_safe(N,V):- + ok_var_name(N)-> var(V). + + +get_varnames(Was):- nb_current('$variable_names',Was)->true;Was=[]. + +push_varnames(New):- + (nonvar(New)-> b_setval('$variable_names',New) + ; (get_varnames(Was), Was = New, b_setval('$variable_names',Was))). + +add_variable_names(Vars):- var(Vars),!. +add_variable_names(N=V):- !, ignore(set_varname_s(N,V)). +add_variable_names([NV|Vars]):- add_variable_names(NV),!, add_variable_names(Vars). +add_variable_names([]). + +set_varname_s(N,V):- get_varnames(Was), set_varname4(Was,N,V,New),b_setval('$variable_names',New). + +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), NN==N,!, (V=VV->true;setarg(2,NV,V)), New = Was. +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), VV==V,!, (N=NN->true;setarg(1,NV,N)), New = Was. +set_varname4(Was,N,V,[N=V|Was]). + + +set_variable_names_safe(Vars):- + is_variable_names_safe(Vars)-> + b_setval('$variable_names',Vars); true. + +input_to_forms0(Codes,FormsOut,Vars):- + % is_openable(Codes),!, + parse_sexpr(Codes, Forms0),!, + once((to_untyped(Forms0, Forms1), + extract_lvars(Forms1,FormsOut,Vars))). + +input_to_forms0(Forms,FormsOut,Vars):- + (to_untyped(Forms, Forms1) -> + extract_lvars(Forms1,FormsOut,Vars)-> true),!. + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Lisprolog -- Interpreter for a simple Lisp. Written in Prolog. + Written Nov. 26th, 2006 by Markus Triska (triska@gmx.at). + Public domain code. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +%:- style_check(-singleton). +%:- style_check(-discontiguous). +% :- style_check(-atom). +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + +tstl:- tstl('./ontologyportal_sumo/Merge.kif'), + tstl('./ontologyportal_sumo/Translations/relations-en.txt'), + tstl('./ontologyportal_sumo/english_format.kif'), + tstl('./ontologyportal_sumo/domainEnglishFormat.kif'), + tstl('./ontologyportal_sumo/Mid-level-ontology.kif'), + !. + +writeqnl(O):- writeq(O),nl. + + + +%:- fixup_exports. +%:- endif. + diff --git a/metta_vspace/pyswip-12-15/metta_rust.pl b/metta_vspace/pyswip-12-15/metta_rust.pl new file mode 100755 index 00000000..fcae66a4 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_rust.pl @@ -0,0 +1,5 @@ + + +:- ensure_loaded(metta_python). +:- ensure_loaded(metta_interp). + diff --git a/metta_vspace/pyswip-12-15/metta_space.pl b/metta_vspace/pyswip-12-15/metta_space.pl new file mode 100755 index 00000000..c63a1c27 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_space.pl @@ -0,0 +1,672 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +:- ensure_loaded(metta_compiler). +%:- ensure_loaded(metta_compiler). +% TODO move non flybase specific code between here and the compiler +:- ensure_loaded(flybase_main). + +:- multifile(is_pre_statistic/2). +:- dynamic(is_pre_statistic/2). +save_pre_statistic(Name):- is_pre_statistic(Name,_)-> true; (statistics(Name,AS),term_number(AS,FN),assert(is_pre_statistic(Name,FN))). +pre_statistic(N,V):- is_pre_statistic(N,V)-> true ; V = 0. +post_statistic(N,V):- statistics(N,VV),term_number(VV,FV),pre_statistic(N,WV), V0 is FV-WV, (V0<0 -> V = 0 ; V0=V). +term_number(T,N):- sub_term(N,T),number(N). + + +call_match([G]):-!, call(G). +call_match([G|GG]):- !, call(G), call_match(GG). +call_match(G):- call(G). + + +:- dynamic(repeats/1). +:- dynamic(not_repeats/1). +assert_new(P):- call(P),!,assert_new1(repeats(P)). +assert_new(P):- assert(P), flag(assert_new,TA,TA+1),assert_new1(not_repeats(P)),!. + +retract1(P):- \+ call(P),!. +retract1(P):- ignore(\+ retract(P)). + +assert_new1(P):- \+ \+ call(P),!. +assert_new1(P):- assert(P). + + +:- dynamic(fb_pred/3). +:- dynamic(mod_f_a/3). +decl_m_fb_pred(Mod,Fn,A):- var(Mod),!,mod_f_a(Mod,Fn,A). +decl_m_fb_pred(Mod,Fn,A):- mod_f_a(Mod,Fn,A)->true;(dynamic(Mod:Fn/A),assert(mod_f_a(Mod,Fn,A))). +:- dynamic(fb_pred_file/3). +decl_fb_pred(Fn,A):- + (fb_pred(Fn,A)-> true; (dynamic(Fn/A),assert(fb_pred(Fn,A)))), + ignore((nb_current(loading_file,File), + (fb_pred_file(Fn,A,File)-> true; assert(fb_pred_file(Fn,A,File))))). +% Import necessary libraries +:- use_module(library(readutil)). + + +skip(_). + +% =============================== +% MeTTa Python incoming interface +% =============================== + +% ============================ +% %%%% Atom Manipulations +% ============================ + +% Clear all atoms from a space +'clear-atoms'(SpaceNameOrInstance) :- + debug_metta(['clear-atoms',SpaceNameOrInstance]), + space_type_method(Type,clear_space,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance). + +% Add an atom to the space +'add-atom'(SpaceNameOrInstance, Atom) :- % debug_metta(['add-atom',SpaceNameOrInstance, Atom]), + space_type_method(Type,add_atom,Method), call(Type,SpaceNameOrInstance),!, + if_t((SpaceNameOrInstance\=='&self' ; Type\=='is_asserted_space'), + debug_metta(['type-method',Type,Method,SpaceNameOrInstance,Atom])), + call(Method,SpaceNameOrInstance,Atom). +% Add Atom +'add-atom'(Environment, AtomDeclaration, Result):- eval_args(['add-atom', Environment, AtomDeclaration], Result). + +% remove an atom from the space +'remove-atom'(SpaceNameOrInstance, Atom) :- + debug_metta(['remove-atom',SpaceNameOrInstance, Atom]), + space_type_method(Type,remove_atom,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance,Atom). +% Remove Atom +'remove-atom'(Environment, AtomDeclaration, Result):- eval_args(['remove-atom', Environment, AtomDeclaration], Result). + +% Add an atom to the space +'replace-atom'(SpaceNameOrInstance, Atom, New) :- + debug_metta(['replace-atom',SpaceNameOrInstance, Atom, New]), + space_type_method(Type,replace_atom,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance,Atom, New). +% Replace Atom +'atom-replace'(Environment, OldAtom, NewAtom, Result):- eval_args(['atom-replace', Environment, OldAtom, NewAtom], Result). + +% Count atoms in a space +'atom-count'(SpaceNameOrInstance, Count) :- + debug_metta(['atom-count',SpaceNameOrInstance]), + space_type_method(Type,atom_count,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance,Count), + debug_metta(['type-method-result',Type,Method,Count]). +% Count Atoms +'atom-count'(Environment, Count):- eval_args(['atom-count', Environment], Count). + +% Fetch all atoms from a space +'get-atoms'(SpaceNameOrInstance, AtomsL) :- + debug_metta(['get-atoms',SpaceNameOrInstance]), + space_type_method(Type,get_atoms,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, AtomsL), + length(AtomsL,Count), + debug_metta(['type-method-result',Type,Method,Count]). +% Get Atoms +'get-atoms'(Environment, Atoms):- eval_args(['get-atoms', Environment], Atoms). + +% Iterate all atoms from a space +'atoms_iter'(SpaceNameOrInstance, Iter) :- + debug_metta(['atoms_iter',SpaceNameOrInstance]), + space_type_method(Type,atoms_iter,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, Iter), + debug_metta(['type-method-result',Type,Method,Iter]). + +% Match all atoms from a space +'atoms_match'(SpaceNameOrInstance, Atoms, Template, Else) :- + space_type_method(Type,atoms_match,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, Atoms, Template, Else), + debug_metta(['type-method-result',Type,Method,Atoms, Template, Else]). + + +% Query all atoms from a space +'space_query'(SpaceNameOrInstance, QueryAtom, Result) :- + space_type_method(Type,query,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, QueryAtom, Result), + debug_metta(['type-method-result',Type,Method,Result]). + + +subst_pattern_template(SpaceNameOrInstance, Pattern, Template) :- + debug_metta([subst_pattern_template,SpaceNameOrInstance, Pattern, Template]), + 'atoms_match'(SpaceNameOrInstance, Pattern, Template, []). + +/* +space_query_vars(SpaceNameOrInstance, Query, Vars) :- is_as_nb_space(SpaceNameOrInstance),!, + fetch_or_create_space(SpaceNameOrInstance, Space), + call_metta(Space,Query,Vars). +*/ :- dynamic(was_asserted_space/1). + +was_asserted_space('&flybase'). +was_asserted_space('&self'). +was_asserted_space('&attentional_focus'). +was_asserted_space('&belief_events'). +was_asserted_space('&goal_events'). +was_asserted_space('&tempset'). +was_asserted_space('&concepts'). +was_asserted_space('&belief_events'). + +is_asserted_space(X):- was_asserted_space(X). +is_asserted_space(X):- \+ is_as_nb_space(X), \+ py_named_space(X),!. + +is_python_space_not_prolog(X):- \+ is_as_nb_space(X), \+ is_asserted_space(X). + +:- dynamic(is_python_space/1). + +:- dynamic(py_named_space/1). + +%py_named_space('&self'). +%py_named_space('&vspace'). +% Function to check if an atom is registered as a space name +:- dynamic is_registered_space_name/1. +is_as_nb_space('&nb'). +is_as_nb_space(G):- is_valid_nb_space(G) -> true ; + is_registered_space_name(G),nb_current(G,S),is_valid_nb_space(S). + +is_nb_space(G):- nonvar(G), is_as_nb_space(G). +% ============================ +% %%%% Pattern Matching +% ============================ +% Pattern Matching with an else branch +'match'(Environment, Pattern, Template, ElseBranch, Result):- eval_args(['match', Environment, Pattern, Template, ElseBranch], Result). +% Pattern Matching without an else branch +'match'(Environment, Pattern, Template, Result):- eval_argss(['match', Environment, Pattern, Template], Result). +%'match'(_Environment, Pattern, Template, Result):- callable(Pattern),!, call(Pattern),Result=Template. +%'match'(_Environment, Pattern, Template, Result):- !, is_True(Pattern),Result=Template. + + +'new-space'(Space):- gensym('hyperon::space::DynSpace@_',Name), fetch_or_create_space(Name, Space). + +:- dynamic(is_python_space/1). +% =============================== +% MeTTa Python incoming interface +% =============================== + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_as_nb_space,new_space,init_space). +space_type_method(is_as_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_as_nb_space,add_atom,add_nb_atom). +space_type_method(is_as_nb_space,remove_atom,remove_nb_atom). +space_type_method(is_as_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_as_nb_space,atom_count,atom_nb_count). +space_type_method(is_as_nb_space,get_atoms,get_nb_atoms). +%space_type_method(is_as_nb_space,get_atoms,arg(1)). +space_type_method(is_as_nb_space,atom_iter,atom_nb_iter). +%space_type_method(is_as_nb_space,query,space_nb_query). + +% Clear all atoms from a space +clear_nb_atoms(SpaceNameOrInstance) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + nb_setarg(1, Space, []). + +% Add an atom to the space +add_nb_atom(SpaceNameOrInstance, Atom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + NewAtoms = [Atom | Atoms], + nb_setarg(1, Space, NewAtoms). + +% Count atoms in a space +atom_nb_count(SpaceNameOrInstance, Count) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + length(Atoms, Count). + +% Remove an atom from a space +remove_nb_atom(SpaceNameOrInstance, Atom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + select(Atom, Atoms, UpdatedAtoms), + nb_setarg(1, Space, UpdatedAtoms). + +% Fetch all atoms from a space +get_nb_atoms(SpaceNameOrInstance, Atoms) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms). + +% Replace an atom in the space +replace_nb_atom(SpaceNameOrInstance, OldAtom, NewAtom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + ( (select(Found, Atoms, TempAtoms),OldAtom=@=Found) + -> NewAtoms = [NewAtom | TempAtoms], + nb_setarg(1, Space, NewAtoms) + ; false + ). + + + +% Function to confirm if a term represents a space +is_valid_nb_space(Space):- compound(Space),functor(Space,'Space',_). + +% Find the original name of a given space +space_original_name(Space, Name) :- + is_registered_space_name(Name), + nb_current(Name, Space). + +% Register and initialize a new space +init_space(Name) :- + Space = 'Space'([]), + asserta(is_registered_space_name(Name)), + nb_setval(Name, Space). + +fetch_or_create_space(Name):- fetch_or_create_space(Name,_). +% Fetch an existing space or create a new one +fetch_or_create_space(NameOrInstance, Space) :- + ( atom(NameOrInstance) + -> (is_registered_space_name(NameOrInstance) + -> nb_current(NameOrInstance, Space) + ; init_space(NameOrInstance), + nb_current(NameOrInstance, Space)) + ; is_valid_nb_space(NameOrInstance) + -> Space = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_space(Space). + + +% Match Pattern in Space and produce Template +'match'(Space, Pattern, Template) :- + 'get-atoms'(Space, Atoms), + 'match-pattern'(Atoms, Pattern, Template). + +% Simple pattern match +'match-pattern'([], _, []). +'match-pattern'([H |_T], H, H) :- !. +'match-pattern'([_H| T], Pattern, Template) :- 'match-pattern'(T, Pattern, Template). + +%is_python_space(X):- python_object(X). + +ensure_space(X,Y):- catch(ensure_space_py(X,Y),_,fail),!. +ensure_space(_N,_V):- fail. + +% =============================== +% Clause Database interface +% =============================== +%debug_metta(Call):- skip(Call). +if_metta_debug(Goal):- getenv('VSPACE_VERBOSE','2'),!,ignore(call(Goal)). +%if_metta_debug(_):-!. +if_metta_debug(Goal):- !,ignore(call(Goal)). +debug_metta(Term):- notrace(if_metta_debug((format('~N; ~@~n',[write_src(Term)])))). +debug_metta(Msg,Term):- notrace(if_metta_debug((format('~N; ~w: ~@~n',[Msg,write_src(Term)])))),!. + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_asserted_space,new_space,init_space). +space_type_method(is_asserted_space,clear_space,clear_nb_atoms). +space_type_method(is_asserted_space,add_atom,metta_assertdb_add). +space_type_method(is_asserted_space,remove_atom,metta_assertdb_rem). +space_type_method(is_asserted_space,replace_atom,metta_assertdb_replace). +space_type_method(is_asserted_space,atom_count,metta_assertdb_count). +space_type_method(is_asserted_space,get_atoms,metta_assertdb_get_atoms). +space_type_method(is_asserted_space,atom_iter,metta_assertdb_iter). +%space_type_method(is_asserted_space,query,space_nb_query). + +%:- dynamic(for_metta/2). +%for_metta(_,T):- fb_pred(F,A),functor(T,F,A),call(T). +metta_assertdb_ls(KB):-listing(metta_atom(KB,_)). +metta_assertdb_add(KB,Atom):- subst_vars(Atom,New), + decl_m_fb_pred(user,get_metta_atom,2), + MP = metta_atom(KB,New), + assert_new(MP). +metta_assertdb_rem(KB,Old):- metta_assertdb_del(KB,Old). +metta_assertdb_del(KB,Atom):- subst_vars(Atom,Old), decl_m_fb_pred(user,get_metta_atom,2), MP = metta_atom(KB,Old), + copy_term(MP,Copy), clause(MP,true,Ref), MP=@= Copy, !, erase(Ref). % ,metta_assertdb('DEL',Old). +metta_assertdb_replace(KB,Old,New):- metta_assertdb_del(KB,Old), metta_assertdb_add(KB,New). +metta_assertdb_count(KB,Count):- + must_det_ll(( + decl_m_fb_pred(user,get_metta_atom,2), full_symbol_count(SL1), + MP = metta_atom(KB,_), + predicate_property(MP,number_of_clauses(SL2)), + predicate_property(MP,number_of_rules(SL3)), + %metta_assertdb_ls(KB), + Count is SL1 + SL2 - SL3)),!. +metta_assertdb_count(_KB,0):-!. +%metta_assertdb_count(KB,Count):- writeln(metta_assertdb_count_in(KB,Count)), findall(Atom,for_metta(KB,Atom),AtomsL),length(AtomsL,Count),writeln(metta_assertdb_count_out(KB,Count)). +metta_assertdb_iter(KB,Atoms):- decl_m_fb_pred(user,get_metta_atom,2), metta_atom(KB,Atoms). + + + +metta_iter_bind(KB,Query,Vars,VarNames):- + term_variables(Query,QVars), + align_varnames(VarNames,Vars), + TV = debug_metta(['match',KB,Query,QVars,Vars,VarNames]), +% \+ \+ (numbervars(TV,0,_,[]),print(tv=TV),nl), + ignore(QVars=Vars), +% \+ \+ (numbervars(TV,0,_,[]),print(qv=TV),nl), + \+ \+ (%numbervars(TV,0,_,[]), + writeq(av=TV),nl), + space_query_vars(KB,Query,TF),TF\=='False'. + + +% Query from hyperon.base.GroundingSpace +space_query_vars(KB,Query,Vars):- is_asserted_space(KB),!, + decl_m_fb_pred(user,get_metta_atom,2), + call_metta(KB,Query,Vars), + debug_metta('RES',space_query_vars(KB,Query,Vars)). + + +metta_assertdb_get_atoms(KB,AtomsL):- decl_m_fb_pred(user,get_metta_atom,2), findall(Atom,metta_atom(KB,Atom),AtomsL). +/* + +%metta_assertdb_iter_bind(KB,Query,Template,AtomsL):- decl_m_fb_pred(user,get_metta_atom,2), findall(Template,metta_atom(KB,Query),AtomsL). +metta_assertdb_iter_bind(KB,Query,Vars):- + ignore(term_variables(Query,Vars)), + print(metta_assertdb(['match',KB,Query,Vars])),nl, + decl_m_fb_pred(user,get_metta_atom,2), (metta_atom(KB,Query)*->true;call_metta_assertdb(KB,Query,Vars)), + metta_assertdb('RES',metta_assertdb_iter_bind(KB,Query,Vars)). +%metta_assertdb_iter_bind(KB,Atom,Template):- metta_assertdb_stats, findall(Template,metta_assertdb_iter(KB,Atom),VarList). + +metta_assertdb_iter_bind(KB,Atoms,Vars):- + metta_assertdb_stats, + term_variables(Atoms,AVars), + metta_assertdb_iter(KB,Atoms), ignore(AVars = Vars). +*/ + + +align_varnames(VarNames,Vars):- + list_to_set(VarNames,NameSet), + merge_named_vars(NameSet,VarNames,Vars). + +merge_named_vars([],_VarNames,_Vars):-!. +merge_named_vars([N|NameSet],VarNames,Vars):- + merge_named(N,_V,VarNames,Vars), + merge_named_vars(NameSet,VarNames,Vars). +%merge_named_vars(_,_,_). + +merge_named(_,_,[],[]):-!. +merge_named(N,V,[N|VarNames],[V|Vars]):- + merge_named(N,V,VarNames,Vars). + + +call_metta( KB,Query,_Vars):- metta_atom(KB,Query). +call_metta(_KB,Query,_Vars):- metta_to_pyswip([],Query,Call),!, + print(user:Call),nl,user:call(Call). + +metta_to_pyswip(_PS,Query,Call):- var(Query),!,Call=Query. +metta_to_pyswip(_PS,Query,Call):- \+ compound(Query),!,Call=Query,!. +metta_to_pyswip(PS,Query,Call):- is_list(Query),Query=[Q|Uery],!,cmpd_to_pyswip(PS,Q,Uery,Call). +metta_to_pyswip(PS,Query,Call):- Query=..[Q|Uery], cmpd_to_pyswip(PS,Q,Uery,Call). + +cmpd_to_pyswip(PS,Q,Uery,Call):- atom(Q),maplist(metta_to_pyswip([Q|PS]),Uery,Cery),Call=..[Q|Cery]. +cmpd_to_pyswip(PS,"and",Uery,Call):- maplist(metta_to_pyswip(PS),Uery,Args),list_to_conjuncts(Args,Call). + + +'show-metta-def'(Pred, []):- + 'get-metta-src'(Pred,[_|SrcL]), + maplist(write_src_nl,SrcL). + +write_src_nl(Src):- format('~N'),write_src(Src),format('~N'). + +%'get-metta-src'(Pred,[Len|SrcL]):- findall(['AtomDef',Src],'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). +'get-metta-src'(Pred,[Len|SrcL]):- findall(Src,'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). +'get-metta-src1'(Pred,Src):- + current_self(Space), + metta_atom(Space,F,A,List), + once((sub_var(Pred,A)->Src = [F,A,List];sub_var(Pred,F)->Src = [F,A|List])). + +% is a quine +'AtomDef'(X,['AtomDef',X]). + +% =============================== +% PRINTERS +% =============================== + + +pp_sax(V) :- is_final_write(V),!. +pp_sax(S) :- \+ allow_concepts,!, write_src(S). +pp_sax(S) :- is_englishy(S),!,print_concept("StringValue",S). +pp_sax(S) :- symbol_length(S,1),symbol_string(S,SS),!,print_concept("StringValue",SS). +pp_sax(S) :- is_an_arg_type(S,T),!,print_concept("TypeNode",T). +pp_sax(S) :- has_type(S,T),!,format('(~wValueNode "~w")',[T,S]). +pp_sax(S) :- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,(Aft>0->format('(~wValueNode "~w")',[Type,S]);format('(TypeNode "~w")',[Type])). +pp_sax(S) :- print_concept("ConceptNode",S). + +print_concept( CType,V):- allow_concepts, !, write("("),write(CType),write(" "),ignore(with_concepts(false,write_src(V))),write(")"). +print_concept(_CType,V):- ignore(write_src(V)). +write_val(V):- number(V),!, write_src(V). +write_val(V):- compound(V),!, write_src(V). +write_val(V):- write('"'),write(V),write('"'). + +% Base case: atoms are printed as-is. +pp_as(V) :- \+ \+ pp_sex(V),flush_output. +pp_sex(V) :- is_final_write(V),!. +pp_sex('!'(V)) :- write('!'),!,pp_sex(V). +pp_sex('exec'(V)) :- write('!'),!,pp_sex(V). +%pp_sex('') :- format('(EmptyNode null)',[]). +pp_sex('') :- !, format('""',[]). +pp_sex([]):- !, write('()'). +pp_sex('='(N,V)):- allow_concepts, !, format("~N;; ~w == ~n",[N]),!,pp_sex(V). +pp_sex(V) :- (number(V) ; is_dict(V)), !, print_concept('ValueAtom',V). +%pp_sex(V) :- (symbol(V),symbol_number(V,N)), !, print_concept('ValueAtom',N). +pp_sex(S) :- symbol(S), always_dash_functor(S,D), pp_sax(D),!. +pp_sex(S) :- string(S),!, print_concept('StringValue',S). +% Lists are printed with parentheses. +pp_sex(V) :- \+ compound(V), !, format('~p',[V]). +pp_sex(V) :- V = '$VAR'(_), !, format('$~p',[V]). +pp_sex('!'(V)) :- write('!'),!,pp_sex(V). +pp_sex(listOf(S,_)) :- !,pp_sex(listOf(S)). +pp_sex(listOf(S)) :- !,format('(ListValue ~@)',[pp_sex(S)]). + +pp_sex([H|T]) :- \+ no_src_indents, atom(H),member(H,['If','cond','let','let*']),!, + with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T])))). + +pp_sex([H|T]) :- is_list(T), length(T,Args),Args =< 2, fail, + wots(SS,((with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')')))))), + ((atom_length(SS,Len),Len < 20) ->write(SS); + with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T]))))),!. +/* + +pp_sex([H|T]) :- is_list(T),atom(H),upcase_atom(H,U),downcase_atom(H,U),!, + with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')'))). + +%pp_sex([H,B,C|T]) :- T==[],!, +% with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression([B,C]), write(')'))). +*/ +pp_sex(V) :- no_src_indents,!,pp_sexi(V). + +pp_sex(V) :- w_proper_indent(2,w_in_p(pp_sexi(V))). + +no_src_indents:- option_else(src_indents,TF,true),!,TF=='False'. + +pp_sexi_l([H,S]):-H=='[...]', write('['),print_items_list(S),write(' ]'). +pp_sexi_l([H,S]):-H=='{...}', write('{'),print_items_list(S),write(' }'). +pp_sexi_l([H|T]):-write('('), pp_sex(H), print_list_as_sexpression(T), write(')'). + +print_items_list(X):- is_list(X),!,print_list_as_sexpression(X). +print_items_list(X):- write_src(X). + +pp_sexi(V) :- is_final_write(V),!. +pp_sexi([H|T]) :- is_list(T),!,pp_sexi_l([H|T]). +% Compound terms. +%pp_sex(Term) :- compound(Term), Term =.. [Functor|Args], write('('),format('(~w ',[Functor]), write_args_as_sexpression(Args), write(')'). +%pp_sex(Term) :- Term =.. ['=',H|Args], length(Args,L),L>2, write('(= '), pp_sex(H), write('\n\t\t'), maplist(pp_sex(2),Args). +pp_sexi(Term) :- Term==[],!,write('()'). +pp_sexi(Term) :- compound_name_arity(Term,F,0),!,pp_sexi([F]). +pp_sexi(Term) :- Term =.. [Functor|Args], always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. +pp_sexi(Term) :- allow_concepts, Term =.. [Functor|Args], format('(EvaluationLink (PredicateNode "~w") (ListLink ',[Functor]), write_args_as_sexpression(Args), write('))'),!. +pp_sexi(Term) :- Term =.. [Functor|Args], + always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. + +pp_sex(2,Result):- write('\t\t'),pp_sex(Result). + + +current_column(Column) :- current_output(Stream), line_position(Stream, Column),!. +current_column(Column) :- stream_property(current_output, position(Position)), stream_position_data(column, Position, Column). +min_indent(Sz):- current_column(Col),Col>Sz,nl,indent_len(Sz). +min_indent(Sz):- current_column(Col),Need is Sz-Col,indent_len(Need),!. +min_indent(Sz):- nl, indent_len(Sz). +indent_len(Need):- forall(between(1,Need,_),write(' ')). + +w_proper_indent(N,G):- + flag(w_in_p,X,X), %(X==0->nl;true), + XX is (X*2)+N,setup_call_cleanup(min_indent(XX),G,true). +w_in_p(G):- setup_call_cleanup(flag(w_in_p,X,X+1),G,flag(w_in_p,_,X)). + + +always_dash_functor(A,B):- once(dash_functor(A,B)),A\=@=B,!. +always_dash_functor(A,A). + +dash_functor(A,C):- \+ symbol(A),!,C=A. +dash_functor(A,C):- p2m(A,B),A\==B,!,always_dash_functor(B,C). +dash_functor(Functor,DFunctor):- + symbol(Functor), atomic_list_concat(L,'-',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'-',DFunctor). +dash_functor(Functor,DFunctor):- fail, + symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'-',DFunctor). +dash_functor(Functor,DFunctor):- + symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'_',DFunctor). + +sort_on(C,R,A,B):- (A==B-> R= (=) ; must_det_ll((call(C,A,AA),call(C,B,BB),!,compare(R,AA+A,BB+B)))),!. +tokens(X,VL):- unaccent_atom(X,A),!, findall(E,(is_tokenizer(T),call(T,A,E)),L),predsort(sort_on(length_fw_len),L,S),last(S,VL). + +length_fw_len([W|List],L+WL):- length(List,L),atom_length(W,WL). + +print_token_args:- make, + fb_arg(X),tokens(X,A0), + exclude(is_dash,A0,A),tterm(A,AT),writeq(X),write(' '),writeq(AT),write(' '),write_src(A),nl,fail. +is_dash('_'). +is_dash('-'). +tterm([A],A):-!. +tterm([A,':',B|M],BA):- atom(A),!,BA=..[A,B|M]. +tterm([A,B|M],BA):- atom(B),!,BA=..[B,A|M]. +tterm([A|B],BA):- atom(A),!,BA=..[B|A]. +tterm(A,A). + +is_tokenizer(into_list). +is_tokenizer(to_case_break_atoms). +is_tokenizer(atom_to_stem_list). +is_tokenizer(tokenize_atom). +%is_tokenizer(double_metaphone). + + + +is_an_arg_type(S,T):- flybase_identifier(S,T),!. +has_type(S,Type):- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,Aft>0. + +% Print arguments of a compound term. +write_args_as_sexpression([]). +write_args_as_sexpression([H|T]) :- write(' '), pp_sex(H), write_args_as_sexpression(T). + +% Print the rest of the list. +print_list_as_sexpression([]). +%print_list_as_sexpression([H]):- w_proper_indent(pp_sex(H)),!. +print_list_as_sexpression([H|T]):- write(' '), pp_sex(H), print_list_as_sexpression(T). + +call_sexpr(S):- writeln(call=S). +%call_sexpr(Space,Expr,Result):- + +:- dynamic(fb_pred/2). + +full_symbol_count(SL):- flag(total_loaded_atoms,SL,SL),SL>1,!. +full_symbol_count(SL):- findall(NC,(fb_pred(F,A),metta_stats(F,A,NC)),Each), sumlist(Each,SL). + +heartbeat :- + % Get the current time and the last printed time + get_time(CurrentTime), + % Check if the global variable is set + ( nb_current(last_printed_time, _) + -> true + ; nb_setval(last_printed_time, CurrentTime) + ), + + nb_getval(last_printed_time, LastPrintedTime), + + % Calculate the difference + Diff is CurrentTime - LastPrintedTime, + + % If the difference is greater than or equal to 60 seconds (1 minute) + ( Diff >= 60 + -> % Print the heartbeat message and update the last printed time + metta_stats + ; % Otherwise, do nothing + true + ). + +metta_stats:- gc_now, + writeln('\n\n\n\n\n\n;~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), + writeln(';~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), + full_symbol_count(SL), + format("~N~n; Total\t\tAtoms (Atomspace size): ~`.t ~D~108|~n",[SL]), + get_time(CurrentTime), nb_setval(last_printed_time, CurrentTime), + post_statistic(memory,Mem), + post_statistic(atom_space,AS), + post_statistic(cputime,TotalSeconds), + post_statistic(atoms,Concepts), + flag(assert_new,CTs,CTs), + post_statistic(stack,StackMem), + + + PM is Mem + StackMem, + RM is Mem-AS, + PA is RM//(SL+1), + APS is 60*floor(SL/(TotalSeconds+1)), + ACS is AS//(Concepts+1), + + pl_stats('SymbolAtoms',Concepts), + pl_stats('Random samples',CTs), + skip((pl_stats('Bytes Per Atom (Average)',PA), pl_stats('Bytes Per ConceptNode (Average)',ACS))), + skip((pl_stats('Relational Memory',RM), pl_stats('ConceptNode Memory',AS))), + %pl_stats('Queryspace Memory',StackMem), + %CPU is CPUTime-57600, + format_time(TotalSeconds, Formatted), + skip((pl_stats('Atoms per minute',APS))), + pl_stats('Total Memory Used',PM), + pl_stats('Runtime (days:hh:mm:ss)',Formatted), + nl,nl,!. +metta_stats(F):- for_all(fb_pred(F,A),metta_stats(F,A)). +metta_stats(F,A):- metta_stats(F,A,NC), pl_stats(F/A,NC). +metta_stats(F,A,NC):- functor(P,F,A),predicate_property(P,number_of_clauses(NC)). +pl_stats(Stat):- statistics(Stat,Value),pl_stats(Stat,Value). +pl_stats(Stat,[Value|_]):- nonvar(Value),!, pl_stats(Stat,Value). +pl_stats(Stat,Value):- format("~N;\t\t~@: ~`.t ~@~100|",[format_value(Stat),format_value(Value)]),!. + + +% AsPred to print the formatted result. +format_value(Value) :- float(Value),!,format("~2f",[Value]),!. +format_value(Bytes) :- integer(Bytes),format_bytes(Bytes, Formatted), write(Formatted). +format_value(Term) :- format("~w",[Term]). +% Base case: If the number is 1G or more, show it in gigabytes (G). +format_bytes(Bytes, Formatted) :- Bytes >= 1073741824, GB is Bytes / 1073741824, format(string(Formatted), '~2fG', [GB]). +% If the number is less than 1G, show it in megabytes (M). +format_bytes(Bytes, Formatted) :- Bytes >= 104857600, Bytes < 1073741824, !, MB is Bytes / 1048576, D is floor(MB), format(string(Formatted), '~DM', [D]). +% If the number is less than 1K, show it in bytes (B). +format_bytes(Bytes, Formatted) :- format(string(Formatted), '~D', [Bytes]). +% % If the number is less than 1M, show it in kilobytes (K). +%format_bytes(Bytes, Formatted) :- Bytes >= 1024, Bytes < 1048576, !, KB is Bytes / 1024, format(string(Formatted), '~0fK', [KB]). + +% Convert total seconds to days, hours, minutes, seconds, and milliseconds. +format_time(TotalSeconds, Formatted) :- + Seconds is floor(TotalSeconds), + % Get days, remaining seconds + Days is div(Seconds, 86400), + Remain1 is mod(Seconds, 86400)-57600, + format_time(string(Out),'%T',Remain1), + % Format the result + format(string(Formatted), '~w:~w', [Days, Out]). + +% AsPred to print the formatted time. +print_formatted_time(TotalSeconds) :- + format_time(TotalSeconds, Formatted), + writeln(Formatted). + + +metta_final:- + save_pre_statistic(memory), + save_pre_statistic(atoms), + save_pre_statistic(atom_space). +/* +symbol(X):- atom(X). +symbol_number(S,N):- atom_number(S,N). +symbol_string(S,N):- atom_string(S,N). +symbol_chars(S,N):- atom_chars(S,N). +symbol_length(S,N):- atom_length(S,N). +symbol_concat(A,B,C):- atom_concat(A,B,C). +symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). +symbol_contains(T,TT):- atom_contains(T,TT). +*/ + diff --git a/metta_vspace/pyswip-12-15/metta_subst.bk b/metta_vspace/pyswip-12-15/metta_subst.bk new file mode 100755 index 00000000..55f0ca41 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_subst.bk @@ -0,0 +1,833 @@ +%self_eval_l1t(X):- var(X),!. +%self_eval_l1t(X):- string(X),!. +%self_eval_l1t(X):- number(X),!. +%self_eval_l1t([]). +self_eval_l1t(X):- \+ callable(X),!. +self_eval_l1t(X):- is_valid_nb_state(X),!. +self_eval_l1t(X):- is_list(X),!,fail. +%self_eval_l1t(X):- compound(X),!. +%self_eval_l1t(X):- is_ref(X),!,fail. +self_eval_l1t(X):- atom(X),!, \+ nb_current(X,_),!. +self_eval_l1t('True'). self_eval_l1t('False'). self_eval_l1t('F'). + + +:- nb_setval(self_space, '&self'). +eval_l1ts_to(XX,Y):- Y==XX,!. +eval_l1ts_to(XX,Y):- Y=='True',!, is_True(XX),!. + +%current_self(Space):- nb_current(self_space,Space). +eval_l1t_args(A,AA):- + current_self(Space), + eval_l1t_args(11,Space,A,AA). + +%eval_l1t_args(Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval_l1t_args(X)),fail. + +eval_l1t_args(_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval_l1t_args(Depth,Self,X,Y):- nonvar(Y),!,eval_l1t_args(Depth,Self,X,XX),eval_l1ts_to(XX,Y). +eval_l1t_args(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args(_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. + +eval_l1t_args(Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + mnotrace((D1 is Depth-1)),!, + eval_l1t_args0(D1,Self,[F|X],Y). + +eval_l1t_args(Depth,Self,X,Y):- + mnotrace((no_repeats_var(YY), + D1 is Depth-1)), + eval_l1t_args0(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY))). + + + + + +:- nodebug(metta(eval_l1t)). + +/* +debugging_metta(G):-is_debugging((eval_l1t))->ignore(G);true. +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_l1t_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval_l1t,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + +*/ + +eval_l1t_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_l1t_num,_,0),debug(metta(eval_l1t))). +eval_l1t_args0(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args0(Depth,Self,X,Y):- + Depth2 is Depth-1, + eval_l1t_args11(Depth,Self,X,M), + (M\=@=X ->eval_l1t_args0(Depth2,Self,M,Y);Y=X). + + + +eval_l1t_args11(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args11(Depth,Self,X,Y):- \+ debugging(metta(eval_l1t)),!, eval_l1t_args1(Depth,Self,X,Y). +eval_l1t_args11(Depth,Self,X,Y):- flag(eval_l1t_num,EX,EX+1), + option_else(traclen,Max,100), + (EX>Max->(nodebug(metta(eval_l1t)),write('Switched off tracing. For a longer trace !(pragma! tracelen 101))'));true), + mnotrace((no_repeats_var(YY), D1 is Depth-1)), + DR is 99-D1, + if_trace(metta(eval_l1t),indentq(Depth,'-->'(EX,Self,X,depth(DR)))), + Ret=retval(fail), + call_cleanup(( + eval_l1t_args1(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + mnotrace(ignore(((Y\=@=X,if_trace(metta(eval_l1t),indentq(Depth,'<--'(EX,Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(eval_l1t_args0(D1,Self,X,Y)),fail)). + + +:- discontiguous eval_l1t_args1/4. +:- discontiguous eval_l1t_args2/4. + +eval_l1t_args1(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. + +eval_l1t_args1(Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval_l1t_args(Depth,Self,VI,VM), + ( VM\==VI -> eval_l1t_args(Depth,Self,[V|VM],VVO) ; + (eval_l1t_args(Depth,Self,V,VV), (V\==VV -> eval_l1t_args(Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_l1t_args1(_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. + +eval_l1t_args1(Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval_l1t_args(Depth,Self),VI,VO). + +eval_l1t_args1(_Dpth,_Slf,['repl!'],'True'):- !, repl. +eval_l1t_args1(Depth,Self,['!',Cond],Res):- !, call(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['rtrace',Cond],Res):- !, rtrace(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['time',Cond],Res):- !, time(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['print',Cond],Res):- !, eval_l1t_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_l1t_args1(Depth,Self,['println!',Cond],Res):- !, eval_l1t_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). + +eval_l1t_args1(_Dpth,_Slf,List,Y):- is_list(List),maplist(self_eval_l1t,List),List=[H|_], \+ atom(H), !,Y=List. + +eval_l1t_args1(Depth,Self,['assertTrue', X],TF):- !, eval_l1t_args(Depth,Self,['assertEqual',X,'True'],TF). +eval_l1t_args1(Depth,Self,['assertFalse',X],TF):- !, eval_l1t_args(Depth,Self,['assertEqual',X,'False'],TF). + +eval_l1t_args1(Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_eval_l1t(Depth,Self,X,XX), + bagof_eval_l1t(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_l1t_args1(Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (setof_eval_l1t(Depth,Self,X,XX), setof_eval_l1t(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). + +eval_l1t_args1(Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_eval_l1t(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +l1t_loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + l1t_loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), + with_debug((eval_l1t),time_eval('Trace',OrigGoal)))). + +l1t_loonit_asserts(Src,Goal,Check):- + loonit_asserts(Src,Goal,Check). + + +/* +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L):-!. +unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- \+ compound(C),!,L=C. +unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). + +unify_lists(C,L):- \+ compound(C),!,L=C. +unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough(XX,YY),!. + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + +*/ + +eval_l1t_args1(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Depth,Space,Goal). +eval_l1t_args1(Depth,Self,['match',Other,Goal,Template,Else],Template):- + (eval_l1t_args1(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). + +% Macro: case +eval_l1t_args1(Depth,Self,X,Res):- + X= [CaseSym,A,CL],CaseSym == 'case', !, + into_case_l1t_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case_l1t(Key,Case0,Value), + if_trace((case),(format('~N'), + writeqln(c(Nth,Key)=Value))))),KVs),!, + ((eval_l1t_args(Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), + (select_case_l1t(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval_l1t_args(Depth,Self,Value,Res). + + select_case_l1t(Depth,Self,AA,Cases,Value):- + (best_key_l1t(AA,Cases,Value) -> true ; + (maybe_special_key_l1ts(Depth,Self,Cases,CasES), + (best_key_l1t(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key_l1t(AA,Cases,Value):- + ((member(Match-Value,Cases),unify_enough(AA,Match))->true; + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match)))). + + %into_case_l1t_list([[C|ASES0]],CASES):- is_list(C),!, into_case_l1t_list([C|ASES0],CASES),!. + into_case_l1t_list(CASES,CASES):- is_list(CASES),!. + is_case_l1t(AA,[AA,Value],Value):-!. + is_case_l1t(AA,[AA|Value],Value). + + maybe_special_key_l1ts(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval_l1t_args(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(Depth,Self,[_|KVI],KVO):- + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(_Depth,_Self,[],[]). + + +%[collapse,[1,2,3]] +eval_l1t_args1(Depth,Self,['collapse',List],Res):-!, bagof_eval_l1t(Depth,Self,List,Res). +%[superpose,[1,2,3]] +eval_l1t_args1(Depth,Self,['superpose',List],Res):- !, member(E,List),eval_l1t_args(Depth,Self,E,Res). +get_l1t_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_l1t_sa_p2(P3,E,Cmpd,SA). +get_l1t_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_l1t_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_l1t_sa_p1(P3,E,Arg,SA). +eval_l1t_args1(Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval_l1t_args(Depth,Self, Term, Res). + +/* + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +*/ + + + +eval_l1t_args1(Depth,Self, Term, Res):- + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, setof_eval_l1t(Depth,Self,List,Var), + eval_l1t_args(Depth,Self, Term, Res). + + +%max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + +eval_l1t_args1(Depth,Self,['if',Cond,Then],Res):- !, + eval_l1t_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_l1t_args(Depth,Self,Then,Res) ; Res = []). + +eval_l1t_args1(Depth,Self,['if',Cond,Then,Else],Res):- !, + eval_l1t_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_l1t_args(Depth,Self,Then,Res);eval_l1t_args(Depth,Self,Else,Res)). + +eval_l1t_args1(_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + +eval_l1t_args1(Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval_l1t_args(Depth,Self,A5,AE), AE=A)), + eval_l1t_args(Depth,Self,AA,OO). +%eval_l1t_args1(Depth,Self,['let',A,A5,AA],AAO):- !,eval_l1t_args(Depth,Self,A5,A),eval_l1t_args(Depth,Self,AA,AAO). +eval_l1t_args1(Depth,Self,['let*',[],Body],RetVal):- !, eval_l1t_args(Depth,Self,Body,RetVal). +eval_l1t_args1(Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_l1t_args1(Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + +eval_l1t_args1(Depth,Self,['colapse'|List], Flat):- !, maplist(eval_l1t_args(Depth,Self),List,Res),flatten(Res,Flat). +eval_l1t_args1(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter_l1t(Depth,Space,PredDecl). +eval_l1t_args1(_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +eval_l1t_args1(_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +eval_l1t_args1(Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval_l1t_args(Depth,Self,A,AA), eval_l1t_args(Depth,Self,B,BB). + +eval_l1t_args1(Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval_l1t_args(Depth,Self,A,AA), eval_l1t_args(Depth,Self,B,BB). + + +eval_l1t_args1(Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval_l1t_args(Depth,Self,StateExpr,StateMonad), + eval_l1t_args(Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_l1t_args1(Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval_l1t_args(Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_l1t_args1(Depth,Self,['get-state',StateExpr],Value):- !, + eval_l1t_args(Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_l1t_args1(Depth,Self,['get-state',Expr],Value):- !, eval_l1t_args(Depth,Self,Expr,State), arg(1,State,Value). + + + +% check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +/* +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). + +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +space_type_method(is_nb_state,new_space,init_state). +space_type_method(is_nb_state,clear_space,clear_nb_values). +space_type_method(is_nb_state,add_atom,add_nb_value). +space_type_method(is_nb_state,remove_atom,'change-state!'). +space_type_method(is_nb_state,replace_atom,replace_nb_value). +space_type_method(is_nb_state,atom_count,value_nb_count). +space_type_method(is_nb_state,get_atoms,'get-state'). +space_type_method(is_nb_state,atom_iter,value_nb_iter). + +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +*/ + +eval_l1t_args1(Depth,Self,['get-type',Val],Type):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!. + +% mnotrace(G):- once(G). +/* +is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval_l1t(EvalMe):- is_list(EvalMe),!. + +get_type(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type(Depth,Self,Val,Type). + + +get_type(Depth,Self,EvalMe,Type):- needs_eval_l1t(EvalMe),eval_l1t_args(Depth,Self,EvalMe,Val), \+ needs_eval_l1t(Val),!, + get_type(Depth,Self,Val,Type). + +get_type(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type(Depth,_Slf,Type,Type):- Depth<1,!. +get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). +get_type(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type(Depth,Self,Expr,Type):-Depth2 is Depth-1, eval_l1t_args(Depth2,Self,Expr,Val),Expr\=@=Val,get_type(Depth2,Self,Val,Type). + + +get_type(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type(_Dpth,_Slf,_,'%Undefined%'):- fail. +*/ + +eval_l1t_args1(Depth,Self,['length',L],Res):- !, eval_l1t_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_l1t_args1(Depth,Self,['CountElement',L],Res):- !, eval_l1t_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + +/* + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +*/ + +/* +eval_l1t_args1(Depth,Self,[F,A|Args],Res):- + \+ self_eval_l1t(A), + eval_l1t_args(Depth,Self,A,AA),AA\==A, + eval_l1t_args(Depth,Self,[F,AA|Args],Res). + + +eval_l1t_args1(Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_eval_l1t(A), + eval_l1t_args(Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), eval_l1t_args(Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +eval_l1t_args1(Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter_l1t(Depth,Self,['=',F,R]), eval_l1t_args(Depth,Self,[R|Args],Res). + +eval_l1t_args1(Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,eval_l1t_args(Depth,Self,FArgs,Res). +*/ +eval_l1t_args1(_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. +eval_l1t_args1(Depth,Self,['bind!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,eval_l1t_args(Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). +eval_l1t_args1(Depth,Self,['pragma!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,eval_l1t_args(Depth,Self,Expr,Value),set_option_value(Name,Value), return_empty(Value,RetVal). +eval_l1t_args1(_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). + + + +eval_l1t_args1(Depth,Self,['nop',Expr],Empty):- !, eval_l1t_args(Depth,Self,Expr,_), return_empty([],Empty). + +/* +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). +*/ +eval_l1t_args1(_Dpth,_Slf,[And],'True'):- is_and(And),!. +eval_l1t_args1(Depth,Self,['and',X,Y],TF):- !, as_tf((eval_l1t_args(Depth,Self,X,'True'),eval_l1t_args(Depth,Self,Y,'True')),TF). +eval_l1t_args1(Depth,Self,[And,X|Y],TF):- is_and(And),!,eval_l1t_args(Depth,Self,X,TF1), + is_True(TF1),eval_l1t_args1(Depth,Self,[And|Y],TF). +%eval_l1t_args2(Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +eval_l1t_args1(Depth,Self,['or',X,Y],TF):- !, as_tf((eval_l1t_args(Depth,Self,X,'True');eval_l1t_args(Depth,Self,Y,'True')),TF). + + + +eval_l1t_args1(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_l1t_args1(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_l1t_args1(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Expander,Other,_,_),L1),length(L1,C1),findall(_,metta_atom(Space,_),L2),length(L2,C2),Count is C1+C2. +eval_l1t_args1(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). + + +eval_l1t_args1(Depth,Self,['+',N1,N2],N):- number(N1),!, + eval_l1t_args(Depth,Self,N2,N2Res), catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +eval_l1t_args1(Depth,Self,['-',N1,N2],N):- number(N1),!, + eval_l1t_args(Depth,Self,N2,N2Res), catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +eval_l1t_args1(Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(V),is_list(VI),!,maplist(eval_l1t_args(Depth,Self),VI,VO). + +eval_l1t_args1(Depth,Self,X,Y):- + (eval_l1t_args2(Depth,Self,X,Y)*->true; + (eval_l1t_args2_failed(Depth,Self,X,Y)*->true;X=Y)). + + +eval_l1t_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +eval_l1t_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +eval_l1t_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(eval_l1t_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%eval_l1t_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval_l1t_args(Depth,Self,V,O)),V\=@=O,!. +eval_l1t_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, + eval_l1t_args(Depth,Self,H,HH), + eval_l1t_args2_failed(Depth,Self,T,TT). + +eval_l1t_args2_failed(Depth,Self,T,TT):- eval_l1t_args(Depth,Self,T,TT). + + %eval_l1t_args(Depth,Self,X,Y):- eval_l1t_args1(Depth,Self,X,Y)*->true;Y=[]. + +%eval_l1t_args1(Depth,_,_,_):- Depth<1,!,fail. +%eval_l1t_args1(Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_l1t_args1(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. + +% Kills zero arity functions eval_l1t_args1(Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval_l1t_args(Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_l1t_args2(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_l1t_args1(Depth,_,_,_):- Depth<1,!,fail. +eval_l1t_args2(Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_l1t_args2(Depth,Self,[F|PredDecl],Res):- + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval_l1t_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval_l1t_args(Depth,Self,[F|Temp],Res). + + + +% user defined function +eval_l1t_args2(Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Self,H)),!, + eval_l1t_args30(Depth,Self,[H|PredDecl],Res). + +% function inherited by system +eval_l1t_args2(Depth,Self,PredDecl,Res):- eval_l1t_args40(Depth,Self,PredDecl,Res). + +/* +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +%catch_warn(G):- notrace(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +%catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). + +%as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +*/ +eval_l1t_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +eval_l1t_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_l1t_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). +eval_l1t_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_l1t_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_l1t_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous eval_l1t_args3/4. +%eval_l1t_args2(Depth,Self,PredDecl,Res):- eval_l1t_args3(Depth,Self,PredDecl,Res). + +%eval_l1t_args2(_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_eval_l1t,L1),!,Res=L1. +%eval_l1t_args2(_Depth,_Self,X,X). + +/* +is_user_defined_head(Other,H):- mnotrace(is_user_defined_head0(Other,H)). +is_user_defined_head0(Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Other,H). +is_user_defined_head0(Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Other,F). +is_user_defined_head0(Other,H):- is_user_defined_head_f(Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,H). +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,[H|_]). + +%is_user_defined_head_f1(Other,H):- metta_type(Other,H,_). +is_user_defined_head_f1(Other,H):- metta_atom(Other,[H|_]). +is_user_defined_head_f1(Other,H):- metta_defn(Expander,Other,[H|_],_). +%is_user_defined_head_f(_,H):- is_metta_builtin(H). + + +is_special_op(F):- \+ atom(F), \+ var(F), !, fail. +is_special_op('case'). +is_special_op(':'). +is_special_op('='). +is_special_op('->'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). +*/ + + +eval_l1t_args30(Depth,Self,H,B):- (eval_l1t_args34(Depth,Self,H,B)*->true;eval_l1t_args37(Depth,Self,H,B)). + +eval_l1t_args34(_Dpth,Self,H,B):- (metta_defn(Expander,Self,H,B);(metta_atom(Self,H),B='True')). + +% Has argument that is headed by the same function +eval_l1t_args37(Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval_l1t_args(Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_l1t_args30(Depth,Self,[H1|NewArgs],Res). + +eval_l1t_args37(Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Expander,Self,[H|Start],Left), + eval_l1t_args(Depth,Self,[Left|T1],Y). + +% Has subterm to eval_l1t +eval_l1t_args37(Depth,Self,[F|PredDecl],Res):- + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval_l1t_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_l1t_args30(Depth,Self,[F|Temp],Res). + +%eval_l1t_args37(Depth,Self,X,Y):- (eval_l1t_args38(Depth,Self,X,Y)*->true;metta_atom_iter_l1t(Depth,Self,[=,X,Y])). + +eval_l1t_args37(Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval_l1t_args(Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +eval_l1t_args38(_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +eval_l1t_args38(_Dpth,Self,[H|T1],Y):- metta_defn(Expander,Self,[H|T1],Y). +eval_l1t_args38(_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +eval_l1t_args38(_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Expander,Self,Left,Y). + + +%eval_l1t_args3(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Expander,Self,['ift',R,Then],Become),eval_l1t_args(Depth,Self,CR,R),eval_l1t_args(Depth,Self,Then,_True),eval_l1t_args(Depth,Self,Become,RO). + +metta_atom_iter_l1t(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Expander,Other,H,B)*->true;(metta_atom(Other,H),B='True')). + +metta_atom_iter_l1t(Depth,_,_):- Depth<3,!,fail. +metta_atom_iter_l1t(_Dpth,_Slf,[]):-!. +metta_atom_iter_l1t(_Dpth,Other,H):- metta_atom(Other,H). +metta_atom_iter_l1t(Depth,Other,H):- D2 is Depth -1, metta_defn(Expander,Other,H,B),metta_atom_iter_l1t(D2,Other,B). +metta_atom_iter_l1t(_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter_l1t(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter_l1t(D2,Self,X),metta_atom_iter_l1t(D2,Self,[And|Y]). +/* +metta_atom_iter_l1t2(_,Self,[=,X,Y]):- metta_defn(Expander,Self,X,Y). +metta_atom_iter_l1t2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Expander,Other,H,B). +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_defn(Expander,Self,X,Y). %, Y\=='True'. +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_atom(Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_l1t_ref(Other,['=',H,B],Ref):-clause(metta_defn(Expander,Other,H,B),true,Ref). +metta_atom_iter_l1t_ref(Other,H,Ref):-clause(metta_atom(Other,H),true,Ref). + +%not_compound(Term):- \+ is_list(Term),!. +%eval_l1t_args2(Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_l1t_args345(Depth,Self,Term,Res). + + +% function inherited by system +eval_l1t_args40(Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(eval_l1t_args(Depth,Self),X,Y),!,eval_l1t_args5(Depth,Self,[F|Y],FY). +eval_l1t_args40(Depth,Self,FX,FY):- eval_l1t_args5(Depth,Self,FX,FY). + +eval_l1t_args5(_Dpth,_Slf,[F|LESS],Res):- once(eval_l1t_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. +eval_l1t_args5(Depth,Self,[AE|More],TF):- length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_l1t_args6(Depth,Self,[AE|More],TF). +eval_l1t_args6(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). + +%eval_l1t_args40(Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval_l1t_args(Depth,Self,[F2|X2],Y2),eval_l1t_args(Depth,Self,X1,Y1). + + +%cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +bagof_eval_l1t(Depth,Self,X,L):- !,findall(E,eval_l1t_args(Depth,Self,X,E),L). +setof_eval_l1t(Depth,Self,X,S):- !,findall(E,eval_l1t_args(Depth,Self,X,E),L),sort(L,S). +%setof_eval_l1t(Depth,Self,X,S):- setof(E,eval_l1t_args(Depth,Self,X,E),S)*->true;S=[]. + + diff --git a/metta_vspace/pyswip-12-15/metta_subst.pl b/metta_vspace/pyswip-12-15/metta_subst.pl new file mode 100755 index 00000000..0cb31401 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_subst.pl @@ -0,0 +1,971 @@ +%self_subst(X):- var(X),!. +%self_subst(X):- string(X),!. +%self_subst(X):- number(X),!. +%self_subst([]). +self_subst(X):- \+ callable(X),!. +self_subst(X):- self_eval(X),!. +self_subst(X):- is_valid_nb_state(X),!. +self_subst(X):- is_list(X),!,fail. +%self_subst(X):- compound(X),!. +%self_subst(X):- is_ref(X),!,fail. +self_subst(X):- atom(X),!, \+ nb_current(X,_),!. +self_subst('True'). self_subst('False'). self_subst('F'). + + +:- nb_setval(self_space, '&self'). +substs_to(XX,Y):- Y==XX,!. +substs_to(XX,Y):- Y=='True',!, is_True(XX),!. + +%current_self(Space):- nb_current(self_space,Space). +/* +subst_args(Eq,RetType,A,AA):- + current_self(Space), + subst_args(Eq,RetType,11,Space,A,AA). + +%subst_args(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(subst_args(Eq,RetType,X)),fail. +*/ + +subst_args(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + :- style_check(-singleton). + + + +%subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. +%subst_args(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!,subst_args(Eq,RetType,Depth,Self,X,XX),substs_to(XX,Y). +subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. + +subst_args(Eq,RetType,Depth,Self,[F|X],Y):- + % (F=='superpose' ; ( option_value(no_repeats,false))), + mnotrace((D1 is Depth-1)),!, + subst_args0(Eq,RetType,D1,Self,[F|X],Y). + +subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args0(Eq,RetType,Depth,Self,X,Y). +/* +subst_args(Eq,RetType,Depth,Self,X,Y):- + mnotrace((no_repeats_var(YY), + D1 is Depth-1)), + subst_args0(Eq,RetType,D1,Self,X,Y), + mnotrace(( \+ (Y\=YY))). +*/ + + + +:- nodebug(metta(eval)). + +/* +debugging_metta(G):-is_debugging((eval))->ignore(G);true. +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(DR,EX,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + +*/ + +subst_args0(Eq,RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +subst_args0(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args0(Eq,RetType,Depth,Self,X,Y):- + Depth2 is Depth-1, + subst_args11(Eq,RetType,Depth,Self,X,M), + (M\=@=X ->subst_args0(Eq,RetType,Depth2,Self,M,Y);Y=X). + + + +subst_args11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((subst_args)),!, + D1 is Depth-1, + subst_args1(Eq,RetType,D1,Self,X,Y). +subst_args11(Eq,RetType,Eq,RetType,Depth,Self,X,Y):- + notrace(( + + flag(subst_args_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(subst_args,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((subst_args),(PrintRet=1, indentq(DR,EX, '-->',subst(X))))), + Ret=retval(fail))), + + call_cleanup(( + (subst_args1(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + + (PrintRet==1 -> indentq(DR,EX,'<--',Ret) ; + mnotrace(ignore(((Y\=@=X, + if_t(DR<10,if_trace((subst_args),indentq(DR,EX,'<--',s(Ret)))))))))), + + (Ret\=@=retval(fail)->true;(rtrace(subst_args_00(Eq,RetType,D1,Self,X,Y)),fail)). + +/* + +subst_args11(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args11(Eq,RetType,Depth,Self,X,Y):- \+ debugging(metta(eval)),!, subst_args1(Eq,RetType,Depth,Self,X,Y). +subst_args11(Eq,RetType,Depth,Self,X,Y):- + +notrace(( + + flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(DR,EX,'-->'(subst_args(Self,X,'$VAR'('RET'))))))), + Ret=retval(fail))), + + call_cleanup(( + subst_args1(Eq,RetType,D1,Self,X,Y), + mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + mnotrace(ignore(((Y\=@=X,if_trace(metta(eval),indentq(DR,EX,'<--'(Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(subst_args0(Eq,RetType,D1,Self,X,Y)),fail)). +*/ + +:- discontiguous subst_args1/6. +:- discontiguous subst_args2/6. + +subst_args1(Eq,RetType,Depth,Self,X,Y):- + var(Eq) -> (!,subst_args1('=',RetType,Depth,Self,X,Y)); + (atom(Eq), ( Eq \== ('=')) ,!, call(Eq,'=',RetType,Depth,Self,X,Y)). + +subst_args1(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. + +subst_args1(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + subst_args(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> subst_args(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (subst_args(Eq,RetType,Depth,Self,V,VV), (V\==VV -> subst_args(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. + +subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). + +subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((subst_args(Eq,RetType,Depth,Self,A5,AE), AE=A)), + subst_args(Eq,RetType,Depth,Self,AA,OO). +%subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,subst_args(Eq,RetType,Depth,Self,A5,A),subst_args(Eq,RetType,Depth,Self,AA,AAO). +subst_args1(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, subst_args(Eq,RetType,Depth,Self,Body,RetVal). +subst_args1(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + subst_args1(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + is_sl_op('>'). is_sl_op('<'). % is_sl_op('>'). + is_sl_op('\\=@='). + +subst_args1(Eq,RetType,Depth,Self,[OP,N1,N2],TF):- is_sl_op(OP), !, + ((subst_args(Eq,RetType,Depth,Self,N1,N1Res),subst_args(Eq,RetType,Depth,Self,N2,N2Res), + ((N1,N2)\=@=(N1Res,N2Res)),subst_args1(Eq,RetType,Depth,Self,[OP,N1Res,N2Res],TF)) + *->true; + subst_selfless([OP,N1,N2],TF)). + + + +subst_args1(Eq,RetType,_Dpth,_Slf,['repl!'],'True'):- !, repl. +subst_args1(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['rtrace',Cond],Res):- !, rtrace(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['print',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +subst_args1(Eq,RetType,Depth,Self,['println!',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). + +subst_args1(Eq,RetType,_Dpth,_Slf,List,Y):- is_list(List),maplist(self_subst,List),List=[H|_], \+ atom(H), !,Y=List. + +subst_args1(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +subst_args1(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +subst_args1(Eq,RetType,Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_subst(Depth,Self,X,XX), + bagof_subst(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +subst_args1(Eq,RetType,Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (setof_subst(Depth,Self,X,XX), setof_subst(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). + +subst_args1(Eq,RetType,Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_subst(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +l1t_loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + l1t_loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), + with_debug((eval),time_eval('Trace',OrigGoal)))). + +l1t_loonit_asserts(Src,Goal,Check):- + loonit_asserts(Src,Goal,Check). + + +/* +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L):-!. +unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- \+ compound(C),!,L=C. +unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). + +unify_lists(C,L):- \+ compound(C),!,L=C. +unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough(XX,YY),!. + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + +*/ +subst_args1(Eq,RetType,Depth, Self, [OP|ARGS], Template):- + is_space_op(OP), !, + subst_args_as(Depth, Self, [OP|ARGS], Template). + +% Definition of uses_op to validate operations +is_space_op('match'). +is_space_op('get-atoms'). +is_space_op('add-atom'). +is_space_op('remove-atom'). +is_space_op('atom-count'). +is_space_op('atom-replace'). + +subst_args_as(Depth, Self, [OP|ARGS], Template):- !, eval_20('=',_,Depth, Self, [OP|ARGS], Template). + +subst_args_as(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Eq,Depth,Space,Goal). +subst_args_as(Depth,Self,['match',Other,Goal,Template,Else],Template):- + (subst_args_as(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). +subst_args_as(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter_l1t(Eq,Depth,Space,PredDecl). +subst_args_as(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +subst_args_as(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +subst_args_as(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L_as),length(L_as,C_as),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C_as+C2. +subst_args_as(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). + +subst_args1(Eq,RetType,Depth,Self,X,Res):- + X= [CaseSym|_],CaseSym == 'case', !, eval_20('=',_,Depth, Self, X,Res). + +% Macro: case +subst_args1_hide(Depth,Self,X,Res):- + X= [CaseSym,A,CL],CaseSym == 'case', !, + into_case_l1t_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case_l1t(Key,Case0,Value), + if_trace((case),(format('~N'), + writeqln(c(Nth,Key)=Value))))),KVs),!, + ((subst_args(Eq,RetType,Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), + (select_case_l1t(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + subst_args(Eq,RetType,Depth,Self,Value,Res). + + select_case_l1t(Depth,Self,AA,Cases,Value):- + (best_key_l1t(AA,Cases,Value) -> true ; + (maybe_special_key_l1ts(Depth,Self,Cases,CasES), + (best_key_l1t(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key_l1t(AA,Cases,Value):- + ((member(Match-Value,Cases),unify_enough(AA,Match))->true; + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match)))). + + %into_case_l1t_list([[C|ASES0]],CASES):- is_list(C),!, into_case_l1t_list([C|ASES0],CASES),!. + into_case_l1t_list(CASES,CASES):- is_list(CASES),!. + is_case_l1t(AA,[AA,Value],Value):-!. + is_case_l1t(AA,[AA|Value],Value). + + maybe_special_key_l1ts(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + subst_args(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(Depth,Self,[_|KVI],KVO):- + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(_Depth,_Self,[],[]). + + +%[collapse,[1,2,3]] +subst_args1(Eq,RetType,Depth,Self,['collapse',List],Res):-!, bagof_subst(Depth,Self,List,Res). +%[superpose,[1,2,3]] +subst_args1(Eq,RetType,Depth,Self,['superpose',List],Res):- !, member(E,List),subst_args(Eq,RetType,Depth,Self,E,Res). + +get_l1t_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_l1t_sa_p2(P3,E,Cmpd,SA). +get_l1t_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_l1t_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_l1t_sa_p1(P3,E,Arg,SA). +subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + subst_args(Eq,RetType,Depth,Self, Term, Res). + +/* + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +*/ +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +subst_args1(Eq,RetType,_Depth,_Self,['nop'], _ ):- !, fail. +subst_args1(Eq,RetType,Depth,Self,['nop',Expr], Empty):- !, + ignore(subst_args(Eq,RetType,Depth,Self,Expr,_)), + return_empty([], Empty). + +subst_args1(Eq,RetType,Depth,Self,['do',Expr], Empty):- !, + forall(subst_args(Eq,RetType,Depth,Self,Expr,_),true), + return_empty([],Empty). + +subst_args1(Eq,RetType,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). + +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + +subst_args1(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(subst_args,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + (call(Body), nb_setarg(1,Do_more_defs,false), + deterministic(TF), (TF==true -> ! ; true)). + + +subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> subst_args(Eq,RetType,Depth,Self,Then,Res) + ; subst_args(Eq,RetType,Depth,Self,Else,Res)). + +subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> subst_args(Eq,RetType,Depth,Self,Then,Res) + ; subst_args(Eq,RetType,Depth,Self,Else,Res)). + +subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + + + +subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, setof_subst(Depth,Self,List,Var), + subst_args(Eq,RetType,Depth,Self, Term, Res). + + +%max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + +subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + + + +subst_args1(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(subst_args(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). +subst_args1(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +subst_args1(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). + +subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). + + +subst_args1(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), + subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +subst_args1(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +subst_args1(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% subst_args1(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, subst_args(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +% check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +/* +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). + +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +space_type_method(is_nb_state,new_space,init_state). +space_type_method(is_nb_state,clear_space,clear_nb_values). +space_type_method(is_nb_state,add_atom,add_nb_value). +space_type_method(is_nb_state,remove_atom,'change-state!'). +space_type_method(is_nb_state,replace_atom,replace_nb_value). +space_type_method(is_nb_state,atom_count,value_nb_count). +space_type_method(is_nb_state,get_atoms,'get-state'). +space_type_method(is_nb_state,atom_iter,value_nb_iter). + +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type_l1t(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type_l1t(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type_l1t(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +*/ + +subst_args1(Eq,RetType,Depth,Self,['get-type',Val],Type):- !, get_type_l1t(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!. + +% mnotrace(G):- once(G). +/* +is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +*/ + +needs_subst(EvalMe):- is_list(EvalMe),!. + + +get_type_l1t(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type_l1t(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type_l1t(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type_l1t(Depth,Self,Val,Type). + + +get_type_l1t(Depth,Self,EvalMe,Type):- needs_subst(EvalMe),subst_args(Eq,RetType,Depth,Self,EvalMe,Val), \+ needs_subst(Val),!, + get_type_l1t(Depth,Self,Val,Type). + +get_type_l1t(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type_l1t(Depth,_Slf,Type,Type):- Depth<1,!. +get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type_l1t(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type_l1t(Depth2,Self),List,Types). +get_type_l1t(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type_l1t(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type_l1t(Depth2,Self,Type2,Type). +%get_type_l1t(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type_l1t(Depth,Self,Expr,Type):-Depth2 is Depth-1, subst_args(Eq,RetType,Depth2,Self,Expr,Val),Expr\=@=Val,get_type_l1t(Depth2,Self,Val,Type). + + +get_type_l1t(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type_l1t(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type_l1t(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type_l1t(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type_l1t(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type_l1t(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type_l1t(Depth2,Self,Ele,Type)),!. +%get_type_l1t(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type_l1t(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type_l1t(_Dpth,_Slf,_,'%Undefined%'):- fail. + + +subst_args1(Eq,RetType,Depth,Self,['length',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +subst_args1(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + +/* + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +*/ + +/* +subst_args1(Eq,RetType,Depth,Self,[F,A|Args],Res):- + \+ self_subst(A), + subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A, + subst_args(Eq,RetType,Depth,Self,[F,AA|Args],Res). + + +subst_args1(Eq,RetType,Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_subst(A), + subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), subst_args(Eq,RetType,Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter_l1t(Eq,Depth,Self,['=',F,R]), subst_args(Eq,RetType,Depth,Self,[R|Args],Res). + +subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,subst_args(Eq,RetType,Depth,Self,FArgs,Res). +*/ +subst_args1(Eq,RetType,_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. +subst_args1(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). +subst_args1(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),set_option_value(Name,Value), return_empty(Value,RetVal). +subst_args1(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). + + + +%l_l1t_args1(Depth,Self,['nop',Expr],Empty):- !, subst_args(Eq,RetType,Depth,Self,Expr,_), return_empty([],Empty). + +/* +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). +*/ +subst_args1(Eq,RetType,_Dpth,_Slf,[And],'True'):- is_and(And),!. +subst_args1(Eq,RetType,Depth,Self,['and',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True'),subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). +subst_args1(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And),!,subst_args(Eq,RetType,Depth,Self,X,TF1), + is_True(TF1),subst_args1(Eq,RetType,Depth,Self,[And|Y],TF). +%subst_args2(Eq,Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +subst_args1(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True');subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). + + + + +subst_args1(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +subst_args1(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(Eq,V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). + +subst_args1(Eq,RetType,Depth,Self,X,Y):- + (subst_args2(Eq,Depth,Self,X,Y)*->true; + (subst_args2_failed(Depth,Self,X,Y)*->true;X=Y)). + + +subst_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +subst_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +subst_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%subst_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(subst_args(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +subst_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, + subst_args(Eq,RetType,Depth,Self,H,HH), + subst_args2_failed(Depth,Self,T,TT). + +subst_args2_failed(Depth,Self,T,TT):- subst_args(Eq,RetType,Depth,Self,T,TT). + + %subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args1(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. + +%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%subst_args1(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. + +% Kills zero arity functions subst_args1(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,subst_args(Eq,RetType,Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +subst_args2(Eq,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +subst_args2(Eq,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +subst_args2(Eq,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + subst_args(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + subst_args(Eq,RetType,Depth,Self,[F|Temp],Res). + + + +% user defined function +subst_args2(Eq,Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Eq,Self,H)),!, + subst_args30(Eq,Depth,Self,[H|PredDecl],Res). + +% function inherited by system +subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args40(Eq,Depth,Self,PredDecl,Res). + +/* +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +%catch_warn(G):- notrace(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +%catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). + +%as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +*/ +subst_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +subst_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +subst_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). +subst_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +subst_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +subst_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous subst_args3/4. +%subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args3(Depth,Self,PredDecl,Res). + +%subst_args2(Eq,_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_subst,L1),!,Res=L1. +%subst_args2(Eq,_Depth,_Self,X,X). + +/* +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +is_user_defined_head_f1(Eq,Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + + +is_special_op(F):- \+ atom(F), \+ var(F), !, fail. +is_special_op('case'). +is_special_op(':'). +is_special_op('='). +is_special_op('->'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). +*/ + + +subst_args30(Eq,Depth,Self,H,B):- (subst_args34(Depth,Self,H,B)*->true;subst_args37(Eq,Depth,Self,H,B)). + +subst_args34(_Dpth,Self,H,B):- (metta_defn(Eq,Self,H,B);(get_metta_atom(Eq,Self,H),B=H)). + +% Has argument that is headed by the same function +subst_args37(Eq,Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + subst_args(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + subst_args30(Eq,Depth,Self,[H1|NewArgs],Res). + +subst_args37(Eq,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Eq,Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + subst_args(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to subst +subst_args37(Eq,Depth,Self,[F|PredDecl],Res):- + Depth>1, fail, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + subst_args(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + subst_args30(Eq,Depth,Self,[F|Temp],Res). + +%subst_args37(Eq,Depth,Self,X,Y):- (subst_args38(Eq,Depth,Self,X,Y)*->true;metta_atom_iter_l1t(Eq,Depth,Self,[=,X,Y])). + +subst_args37(Eq,Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (get_metta_atom(Eq,Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (subst_args(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +subst_args38(Eq,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Eq,Self,H) ), !,fail. +subst_args38(Eq,_Dpth,Self,[H|T1],Y):- metta_defn(Eq,Self,[H|T1],Y). +subst_args38(Eq,_Dpth,Self,[H|T1],'True'):- get_metta_atom(Eq,Self,[H|T1]). +subst_args38(Eq,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Eq,Self,Left,Y). + + +%subst_args3(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Eq,Self,['ift',R,Then],Become),subst_args(Eq,RetType,Depth,Self,CR,R),subst_args(Eq,RetType,Depth,Self,Then,_True),subst_args(Eq,RetType,Depth,Self,Become,RO). + +metta_atom_iter_l1t(Eq,_Dpth,Other,[Equal,H,B]):- Eq == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B=H)). + +metta_atom_iter_l1t(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter_l1t(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter_l1t(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter_l1t(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter_l1t(Eq,D2,Other,B). +metta_atom_iter_l1t(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter_l1t(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter_l1t(Eq,D2,Self,X),metta_atom_iter_l1t(Eq,D2,Self,[And|Y]). +/* +metta_atom_iter_l1t2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter_l1t2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_l1t_ref(Other,['=',H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). +metta_atom_iter_l1t_ref(Other,H,Ref):-clause(get_metta_atom(Eq,Other,H),true,Ref). + +%not_compound(Term):- \+ is_list(Term),!. +%subst_args2(Eq,Depth,Self,Term,Res):- maplist(not_compound,Term),!,subst_args345(Depth,Self,Term,Res). + + +% function inherited by system +subst_args40(Eq,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(subst_args(Eq,RetType,Depth,Self),X,Y),!,subst_args5(Depth,Self,[F|Y],FY). +subst_args40(Eq,Depth,Self,FX,FY):- subst_args5(Depth,Self,FX,FY). + +subst_args5(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. +subst_args5(Depth,Self,[AE|More],TF):- is_system_pred(AE), length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;subst_args6(Depth,Self,[AE|More],TF). +subst_args6(_Dpth,_Slf,[AE|More],TF):- is_system_pred(AE),length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). + +%subst_args40(Eq,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,subst_args(Eq,RetType,Depth,Self,[F2|X2],Y2),subst_args(Eq,RetType,Depth,Self,X1,Y1). + + +%cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +bagof_subst(Depth,Self,X,L):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L). +setof_subst(Depth,Self,X,S):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L),sort(L,S). +%setof_subst(Depth,Self,X,S):- setof(E,subst_args(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. + + diff --git a/metta_vspace/pyswip-12-15/metta_test_nars_1.pl b/metta_vspace/pyswip-12-15/metta_test_nars_1.pl new file mode 100755 index 00000000..4a2f432f --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_test_nars_1.pl @@ -0,0 +1,1752 @@ +% (track_load_into_file "../../examples/VRUN_tests1.metta") +:-metta_eval(['extend-py!',metta_learner]). + +%;; stdlib extension +metta_type('&self','If',[->,'Bool','Atom','Atom']). + +metta_defn_ES(['If','True',Then],Then). + +metta_defn_ES(['If','False',Then],[]). + +metta_type('&self','If',[->,'Bool','Atom','Atom','Atom']). + +metta_defn_ES( + ['If',Cond,Then,Else], + [if,Cond,Then,Else]). + +metta_defn_ES( + ['TupleConcat',Ev1,Ev2], + [ collapse, + [ superpose, + [ [ superpose, Ev1 ], + [ superpose, Ev2 ]]]]). + +metta_defn_ES( + [max,Num1,Num2], + [ 'If', + [>,Num1,Num2], Num1,Num2]). + +metta_defn_ES( + [min,Num1,Num2], + [ 'If', + [<,Num1,Num2], Num1,Num2]). + +metta_defn_ES( + [abs,X], + [ 'If', + [<,X,0], + [-,0,X], + X]). + +metta_type('&self',sequential,[->,'Expression','%Undefined%']). + +metta_defn_ES([sequential,Num1],[superpose,Num1]). + +metta_type('&self',do,[->,'Expression','%Undefined%']). + +metta_defn_ES([do,Num1],[case,Num1,[]]). + +metta_defn_ES(['TupleCount',[]],0). + +metta_defn_ES(['TupleCount',[1]],1). + +metta_defn_ES( + ['BuildTupleCounts',TOld,C,N], + [ let, + T, + [ collapse, + [ superpose, + [ 1, + [superpose,TOld]]]], + [ superpose, + [ [ 'add-atom', + '&self', + [ =, + ['TupleCount',T], + [+,C,2]]], + [ 'If', + [<,C,N], + [ 'BuildTupleCounts', + T, + [+,C,1], + N]]]]]). + +metta_type('&self','CountElement',[->,'Expression','Number']). + +metta_defn_ES( + ['CountElement',X], + [ case, + X, + [ [ Y,1]]]). + +%;;Build for count up to 100 (takes a few sec but it is worth it if space or generally collapse counts are often needed) +:-metta_eval(['BuildTupleCounts',[1],0,100]). + +metta_defn_ES( + [ 'BuildTupleCounts', + [1], 0,100], + [ let, + A, + [ collapse, + [ superpose, + [ 1, + [ superpose, + [1]]]]], + [ superpose, + [ [ 'add-atom', + '&self', + [ =, + ['TupleCount',A], + [+,0,2]]], + [ 'If', + [<,0,100], + [ 'BuildTupleCounts', + A, + [+,0,1], + 100]]]]]). + +metta_type('&self','CollapseCardinality',[->,'Expression','Number']). + +metta_defn_ES( + ['CollapseCardinality',Expression], + [ 'TupleCount', + [ collapse, + ['CountElement',Expression]]]). + +%;; Truth functions +metta_defn_ES( + ['Truth_c2w',C], + [ /, + C, + [-,1,C]]). + +metta_defn_ES( + ['Truth_w2c',W], + [ /, + W, + [+,W,1]]). + +metta_defn_ES( + [ 'Truth_Deduction', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,F1,F2], + [*,C1,C2]]]). + +metta_defn_ES( + [ 'Truth_Abduction', + [F1,C1], + [F2,C2]], + [ F2, + [ 'Truth_w2c', + [ *, + [*,F1,C1], + C2]]]). + +metta_defn_ES( + ['Truth_Induction',T1,T2], + ['Truth_Abduction',T2,T1]). + +metta_defn_ES( + [ 'Truth_Exemplification', + [F1,C1], + [F2,C2]], + [ 1.0, + [ 'Truth_w2c', + [ *, + [*,F1,F2], + [*,C1,C2]]]]). + +metta_defn_ES( + ['Truth_StructuralDeduction',T], + [ 'Truth_Deduction', + T, + [1.0,0.9]]). + +metta_defn_ES( + [ 'Truth_Negation', + [F,C]], + [ [-,1,F], + C]). + +metta_defn_ES( + ['Truth','StructuralDeductionNegated',T], + [ 'Truth_Negation', + ['Truth_StructuralDeduction',T]]). + +metta_defn_ES( + [ 'Truth_Intersection', + [F1,C1], + [F2,C2]], + [ [ * ,F1,F2], + [ * ,C1,C2]]). + +metta_defn_ES( + ['Truth_StructuralIntersection',T], + [ 'Truth_Intersection', + T, + [1.0,0.9]]). + +metta_defn_ES( + ['Truth_or',A,B], + [ -, + 1, + [ *, + [-,1,A], + [-,1,B]]]). + +metta_defn_ES( + [ 'Truth_Comparison', + [F1,C1], + [F2,C2]], + [ let, + F0, + ['Truth_or',F1,F2], + [ [ 'If', + [==,F0,0.0], + 0.0, + [ /, + [*,F1,F2], + F0]], + [ 'Truth_w2c', + [ *, + F0, + [*,C1,C2]]]]]). + +metta_defn_ES( + [ 'Truth_Analogy', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,C1,C2], + F2]]). + +metta_defn_ES( + [ 'Truth_Resemblance', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,C1,C2], + ['Truth_or',F1,F2]]]). + +metta_defn_ES( + [ 'Truth_Union', + [F1,C1], + [F2,C2]], + [ [ 'Truth_or', F1 , F2 ], + [ * , C1 , C2 ]]). + +metta_defn_ES( + [ 'Truth_Difference', + [F1,C1], + [F2,C2]], + [ [ *, + F1, + [-,1,F2]], + [*,C1,C2]]). + +metta_defn_ES( + [ 'Truth_DecomposePNN', + [F1,C1], + [F2,C2]], + [ let, + Fn, + [ *, + F1, + [-,1,F2]], + [ [-,1,Fn], + [ *, + Fn, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_DecomposeNPP', + [F1,C1], + [F2,C2]], + [ let, + F, + [ *, + [-,1,F1], + F2], + [ F, + [ *, + F, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_DecomposePNP', + [F1,C1], + [F2,C2]], + [ let, + F, + [ *, + F1, + [-,1,F2]], + [ F, + [ *, + F, + [*,C1,C2]]]]). + +metta_defn_ES( + ['Truth_DecomposePPP',V1,V2], + [ 'Truth_DecomposeNPP', + ['Truth_Negation',V1], + V2]). + +metta_defn_ES( + [ 'Truth_DecomposeNNN', + [F1,C1], + [F2,C2]], + [ let, + Fn, + [ *, + [-,1,F1], + [-,1,F2]], + [ [-,1,Fn], + [ *, + Fn, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_Eternalize', + [F,C]], + [ F, + ['Truth_w2c',C]]). + +metta_defn_ES( + [ 'Truth_Revision', + [F1,C1], + [F2,C2]], + [ 'let*', + [ [ W1, + ['Truth_c2w',C1]], + [ W2, + ['Truth_c2w',C2]], + [ W, + [+,W1,W2]], + [ F, + [ /, + [ +, + [*,W1,F1], + [*,W2,F2]], + W]], + [ C, + ['Truth_w2c',W]]], + [ [min,1.0,F], + [ min, + 0.99, + [ max, + [max,C,C1], + C2]]]]). + +metta_defn_ES( + [ 'Truth_Expectation', + [F,C]], + [ +, + [ *, + C, + [-,F,0.5]], + 0.5]). +% ;;NAL-1 +% ;;!Syllogistic rules for Inheritance: +metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[A,-->,D],['Truth_Deduction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,-->,B],['Truth_Induction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,-->,A],['Truth_Abduction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[D,-->,A],['Truth_Exemplification',C,E]]). +% ;;NAL-2 +% ;;!Rules for Similarity: +metta_defn_ES(['|-',[[A,<->,B],C]] , [[B,<->,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[A,<->,B],C],[[D,<->,A],E]] , [[D,<->,B],['Truth_Resemblance',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,<->,A],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,<->,B],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,A],E]] , [[D,-->,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,B],E]] , [[A,-->,D],['Truth_Analogy',C,E]]). +% ;;!Dealing with properties and instances: +metta_defn_ES(['|-',[[A,-->,['{',B,'}']],C]] , [[A,<->,['{',B,'}']],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[['$OBJ'(claz_bracket_vector,['$S'])],-->,A],B]] , [[['$OBJ'(claz_bracket_vector,['$S'])],<->,A],['Truth_StructuralIntersection',B]]). +metta_defn_ES(['|-',[[['{',A,'}'],-->,B],C],[[D,<->,A],E]] , [[['{',D,'}'],-->,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,-->,['$OBJ'(claz_bracket_vector,['$M'])]],B],[[_,<->,_],C]] , [[A,-->,['$OBJ'(claz_bracket_vector,['$S'])]],['Truth_Analogy',B,C]]). +get_metta_atom(Eq,'&self',[=,['|-',[[['{',A,'}'],<->,['{',B,'}']]],[A,<->,B],['Truth_StructuralIntersection',_]]]). +get_metta_atom(Eq,'&self',[=,['|-',[[['$OBJ'(claz_bracket_vector,[A])],<->,['$OBJ'(claz_bracket_vector,[B])]]],[_,<->,_],['Truth_StructuralIntersection',_]]]). +% ;;NAL-3 +% ;;!Set decomposition: +metta_defn_ES(['|-',[[['{',A,_,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[['{',_,A,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[A])]],['Truth_StructuralDeduction',A]]). +metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[B])]],['Truth_StructuralDeduction',A]]). +% ;;!Extensional and intensional intersection decomposition: +metta_defn_ES(['|-',[[[A,'|',_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[B,&,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[_,'|',A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[_,&,B]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[A,~,_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[B,-,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[_,~,A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). +metta_defn_ES(['|-',[[A,-->,[_,-,B]],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). +% ;;!Extensional and intensional intersection composition: (sets via reductions). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,'|',D],-->,B],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,&,D],-->,B],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,~,D],-->,B],['Truth_Difference',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,&,D]],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,'|',D]],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,-,D]],['Truth_Difference',C,E]]). +% ;;!Extensional and intensional intersection decomposition: +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,'|',D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,'|',A],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,&,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,&,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,~,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,~,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,&,D]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,&,B]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,'|',D]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,'|',B]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,-,D]],E]] , [[A,-->,D],['Truth_DecomposePNP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,-,B]],E]] , [[A,-->,D],['Truth_DecomposeNNN',C,E]]). +% ;; NAL-4 +% ;;!Transformation rules between product and image: +metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[A,-->,[C,'/1',B]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[B,-->,[C,'/2',A]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\1',C],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\2',B],-->,C],['Truth_StructuralIntersection',D]]). +% ;;other direction of same rules (as these are bi-directional). +metta_defn_ES(['|-',[[A,-->,[B,'/1',C]],D]] , [[[A,*,C],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,'/2',C]],D]] , [[[C,*,A],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,'\\1',B],-->,C],D]] , [[A,-->,[C,*,B]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,'\\2',B],-->,C],D]] , [[A,-->,[B,*,C]],['Truth_StructuralIntersection',D]]). +% ;;!Comparative relations +metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[>>>,_]],['Truth_FrequencyGreater',B,D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[>>>,C]],D],[[[B,*,E],-->,[>>>,C]],F]] , [[[A,*,E],-->,[>>>,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[===,_]],['Truth_FrequencyEqual',B,D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D],[[[B,*,E],-->,[===,C]],F]] , [[[A,*,E],-->,[===,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D]] , [[[B,*,A],-->,[===,C]],['Truth_StructuralIntersection',D]]). +% ;;!Optional rules for more efficient reasoning about relation components: +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[E,-->,A],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[E,-->,B],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[E,-->,B],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[E,-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,A],F]] , [[[E,*,B],-->,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[A,-->,E],F]] , [[[E,*,B],-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,A],F]] , [[[E,*,B],-->,C],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,B],F]] , [[[A,*,E],-->,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[B,-->,E],F]] , [[[A,*,E],-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,B],F]] , [[[A,*,E],-->,C],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[B,-->,E],F]] , [[A,-->,[E,*,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,B],F]] , [[A,-->,[E,*,C]],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,B],F]] , [[A,-->,[E,*,C]],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[C,-->,E],F]] , [[A,-->,[B,*,E]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,C],F]] , [[A,-->,[B,*,E]],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,C],F]] , [[A,-->,[B,*,E]],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[A,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[C,<->,E],['Truth_Comparison',D,F]]). +% ;;NAL-5 +% ;;!Negation conjunction and disjunction decomposition: +metta_defn_ES(['|-',[[!,A],B]],[A,['Truth_Negation',B]]). +metta_defn_ES(['|-',[[A,&&,_],B]],[A,['Truth_StructuralDeduction',B]]). +metta_defn_ES(['|-',[[_,&&,A],B]],[A,['Truth_StructuralDeduction',B]]). +metta_defn_ES(['|-',[[A,&&,B],C]] , [[B,&&,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[A,B],[[A,&&,C],D]],[C,['Truth_DecomposePNN',B,D]]). +metta_defn_ES(['|-',[A,B],[[A,'||',C],D]],[C,['Truth_DecomposeNPP',B,D]]). +metta_defn_ES(['|-',[A,B],[[[!,A],&&,C],D]],[C,['Truth_DecomposeNNN',B,D]]). +metta_defn_ES(['|-',[A,B],[[[!,A],'||',C],D]],[C,['Truth_DecomposePPP',B,D]]). +% ;;!Syllogistic rules for Implication: +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[A,==>,D],['Truth_Deduction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,==>,B],['Truth_Induction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,==>,A],['Truth_Abduction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[D,==>,A],['Truth_Exemplification',C,E]]). +% ;;!Conditional composition for conjunction and disjunction: +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,&&,D],==>,B],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,'||',D],==>,B],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,&&,D]],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,'||',D]],['Truth_Union',C,E]]). +% ;;!Multi-conditional inference: +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[A,==>,C],E]],[B,['Truth_Abduction',D,E]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[E,==>,B],F]] , [[[A,&&,E],==>,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[[A,&&,E],==>,C],F]] , [[E,==>,B],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[B,==>,E],F]] , [[[A,&&,E],==>,C],['Truth_Induction',D,F]]). +% ;;!Rules for equivalence: +metta_defn_ES(['|-',[[A,<=>,B],C]] , [[B,<=>,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,A],D]] , [[A,<=>,B],['Truth_Intersection',C,D]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,<=>,A],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,<=>,B],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,A],E]] , [[D,==>,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,B],E]] , [[A,==>,D],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,<=>,B],C],[[D,<=>,A],E]] , [[D,<=>,B],['Truth_Resemblance',C,E]]). +% ;;!Higher-order decomposition +metta_defn_ES(['|-',[A,B],[[A,==>,C],D]],[C,['Truth_Deduction',B,D]]). +metta_defn_ES(['|-',[A,B],[[[A,&&,C],==>,D],E]] , [[C,==>,D],['Truth_Deduction',B,E]]). +metta_defn_ES(['|-',[A,B],[[C,==>,A],D]],[C,['Truth_Abduction',B,D]]). +metta_defn_ES(['|-',[A,B],[[A,<=>,C],D]],[C,['Truth_Analogy',B,D]]). +% ;;NAL term reductions +% ;;!Extensional intersection, union, conjunction reductions: +metta_defn_ES([A,&,A],A). +metta_defn_ES([A,'|',A],A). +metta_defn_ES([A,&&,A],A). +metta_defn_ES([A,'||',A],A). +% ;;!Extensional set reductions: +metta_defn_ES([['{',A,'}'],'|',['{',B,'}']],['{',A,B,'}']). +metta_defn_ES([['{',A,B,'}'],'|',['{',C,'}']],['{',[A|B],C,'}']). +metta_defn_ES([['{',A,'}'],'|',['{',B,C,'}']],['{',A,[B|C],'}']). +% ;;!Intensional set reductions: +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B])]],['$OBJ'(claz_bracket_vector,[A,B])]). +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A,B])],&,['$OBJ'(claz_bracket_vector,[C])]],['$OBJ'(claz_bracket_vector,[[A|B],C])]). +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B,C])]],['$OBJ'(claz_bracket_vector,[A,[B|C]])]). +% ;;!Reduction for set element copula: +metta_defn_ES(['{',[A|B],'}'],['{',A,B,'}']). +metta_defn_ES(['$OBJ'(claz_bracket_vector,[[A|B]])],['$OBJ'(claz_bracket_vector,[A,B])]). + +%;params +metta_defn_ES(['BeliefEventsMax'],10). + +metta_defn_ES(['GoalEventsMax'],10). + +%;spaces +:-metta_eval(['bind!','&belief_events',['new-space']]). + +:-metta_eval(['bind!','&goal_events',['new-space']]). + +%;states +:-metta_eval(['bind!','¤tTime',['new-state',1]]). + +:-metta_eval(['bind!','&evidentialBase',['new-state',1]]). + +metta_defn_ES( + [increment,Atom], + [ 'change-state!', + Atom, + [ +, + 1, + ['get-state',Atom]]]). + +metta_defn_ES( + ['UpdateReasonerState'], + [ [ increment , '¤tTime' ], + [ increment ,'&evidentialBase']]). + +metta_defn_ES( + ['GetReasonerState'], + [ ['get-state','¤tTime'], + [ [ 'get-state' ,'&evidentialBase']]]). + +%;priority of events +metta_defn_ES( + [ 'EventPriorityNow', + [T,P], + T], + [ *, + P, + [ /, + 1, + [ +, + 1, + [-,T,T]]]]). + +%;retrieve the best candidate (allows to use tuples / collapse results / spaces as a PQ) +:-metta_eval(['bind!','&tempbest',['new-state',[]]]). + +:-metta_eval(['bind!','&tempbestscore',['new-state',0]]). + +metta_defn_ES( + ['BestCandidate',Tuple,EvaluateCandidateFunction,T], + [ sequential, + [ [ do, + ['change-state!','&tempbestscore',0]], + [ do, + ['change-state!','&tempbest',[]]], + [ do, + [ 'let*', + [ [ X, + [superpose,Tuple]], + [ Fx, + [EvaluateCandidateFunction,X,T]]], + [ superpose, + [ [ 'If', + [ >, + Fx, + ['get-state','&tempbestscore']], + [ sequential, + [ [ 'change-state!' , '&tempbest' , X ], + [ 'change-state!' ,'&tempbestscore', Fx ]]]]]]]], + ['get-state','&tempbest']]]). + +%;functions to select highest-priority events in belief and goal PQ +metta_defn_ES( + [ 'PriorityOf', + [ 'Event', + Sentence, + [OccT,Ev,Prio]], + T], + ['EventPriorityNow',Prio,T]). + +metta_defn_ES( + ['SelectHighestPriorityEvent',Collection,T], + [ 'BestCandidate', + [ collapse, + ['get-atoms',Collection]], 'PriorityOf',T]). + +%;a belief event to process, which demands adding it to the PQ and updating its concept +metta_defn_ES( + ['ProcessBeliefEvent',Ev,T], + [ sequential, + [ [ 'add-atom' ,'&belief_events', Ev ], + [ 'UpdateConcept' , Ev , T ]]]). + +%;bound the size of the attentional focus for tasks / events +metta_defn_ES( + [ 'BoundEvents', Collection,Threshold, + Increment, TargetAmount, T], + [ sequential, + [ [ do, + [ 'let*', + [ [ Ev, + ['get-atoms',Collection]], + [ [ 'Event', + Sentence, + [Time,Evidence,EPrio]], + Ev]], + [ 'If', + [ <, + ['EventPriorityNow',EPrio,T], + Threshold], + ['remove-atom',Collection,Ev]]]], + [ let, + CurrentAmount, + [ 'CollapseCardinality', + ['get-atoms',Collection]], + [ 'If', + [>,CurrentAmount,TargetAmount], + [ 'BoundEvents', + Collection, + [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). + +%;params +metta_defn_ES(['AttentionalFocusConceptsMax'],10). + +%;spaces +:-metta_eval(['bind!','&concepts',['new-space']]). + +:-metta_eval(['bind!','&attentional_focus',['new-space']]). + +%;priority of concepts +metta_defn_ES( + [ 'ConceptPriorityNow', + [T,P], + T], + [ *, + P, + [ /, + 1, + [ +, + 1, + [-,T,T]]]]). + +%;whether evidence was just counted once +:-metta_eval(['bind!','&tempstate',['new-state','False']]). + +:-metta_eval(['bind!','&tempset',['new-space']]). + +metta_defn_ES( + ['StampDisjoint',X], + [ not, + [ sequential, + [ [ do, + ['change-state!','&tempstate','False']], + [ do, + [ case, + ['get-atoms','&tempset'], + [ [ Y, + ['remove-atom','&tempset',Y]]]]], + [ do, + [ let, + Z, + [superpose,X], + [ case, + [match,'&tempset',Z,Z], + [ [ W, + ['change-state!','&tempstate','True']], + [ '%void%', + ['add-atom','&tempset',Z]]]]]], + ['get-state','&tempstate']]]]). + +%;revise if there is no evidential overlap, else use higher-confident candidate +metta_defn_ES( + [ 'RevisionAndChoice', + [ 'Event', + [ Term1, + [F1,C1]], + [eternal,Ev1,EPrio1]], + [ 'Event', + [ Term2, + [F2,C2]], + [eternal,Ev2,EPrio2]]], + [ let, + ConclusionStamp, + ['TupleConcat',Ev1,Ev2], + [ 'If', + ['StampDisjoint',ConclusionStamp], + [ 'Event', + [ Term1, + [ 'Truth_Revision', + [F1,C1], + [F2,C2]]], + [ eternal, + ConclusionStamp, + [0,0.0]]], + [ 'If', + [>,C1,C2], + [ 'Event', + [ Term1, + [F1,C1]], + [ eternal, + Ev1, + [0,0.0]]], + [ 'Event', + [ Term2, + [F2,C2]], + [ eternal, + Ev2, + [0,0.0]]]]]]). + +%;;update beliefs in existing concept with the new event or create new concept to enter the new evidence +metta_defn_ES( + ['UpdateConcept',NewEvent,T], + [ 'let*', + [ [ [ 'Event', + [Term,TV], + [Time,Evidence,EPrio]], + NewEvent], + [ NewEventEternalized, + ['Eternalize',NewEvent]], + [ MatchConcept, + [ 'Concept', Term,Belief, + BeliefEvent,CPrio]]], + [ sequential, + [ [ case, + [match,'&attentional_focus',MatchConcept,MatchConcept], + [ [ MatchConcept, + [ sequential, + [ ['remove-atom','&attentional_focus',MatchConcept], + [ 'let*', + [ [ RevisedBelief, + ['RevisionAndChoice',Belief,NewEventEternalized]], + [ MaxPrio, + [ 'If', + [ >, + ['EventPriorityNow',EPrio,T], + ['ConceptPriorityNow',CPrio,T]], EPrio,CPrio]]], + [ 'add-atom', + '&attentional_focus', + [ 'Concept', Term, RevisedBelief, NewEvent, MaxPrio]]]]]], + [ '%void%', + [ case, + [match,'&concepts',MatchConcept,MatchConcept], + [ [ MatchConcept, + [ sequential, + [ [ 'remove-atom' , '&concepts' , MatchConcept ], + [ 'add-atom' ,'&attentional_focus', MatchConcept ], + [ 'UpdateConcept' , NewEvent , T ]]]], + [ '%void%', + [ 'add-atom', + '&attentional_focus', + [ 'Concept', Term, NewEventEternalized, NewEvent, EPrio]]]]]]]]]]]). + +%;bound the size of attentional focus of concepts +metta_defn_ES( + [ 'BoundAttention', Threshold,Increment, + TargetAmount,T], + [ sequential, + [ [ do, + [ 'let*', + [ [ C, + ['get-atoms','&attentional_focus']], + [ [ 'Concept', + Term, + ['Event',Sentence,Metadata], BeliefEvent,CPrio], + C]], + [ 'If', + [ <, + ['ConceptPriorityNow',CPrio,T], + Threshold], + [ sequential, + [ [ 'remove-atom' ,'&attentional_focus', C ], + [ 'add-atom' , '&concepts' , C ]]]]]], + [ let, + CurrentAmount, + [ 'CollapseCardinality', + ['get-atoms','&attentional_focus']], + [ 'If', + [>,CurrentAmount,TargetAmount], + [ 'BoundAttention', + [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). + +%;get eternal belief of concept +metta_type('&self','EternalQuestion',[->,'Expression',T]). + +metta_defn_ES( + ['EternalQuestion',Term], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', Term,Belief, + BeliefEvent,CPrio], + Belief], + [ [Ev,Ev], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;get event belief of concept +metta_type('&self','EventQuestion',[->,'Expression',T]). + +metta_defn_ES( + ['EventQuestion',Term], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', Term,Belief, + BeliefEvent,CPrio], + BeliefEvent], + [ [Ev,Ev], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [0,[],0.0]]]]]). + +%;;Declarative inference (deriving events and knowledge from observed events) +%;Derived belief event priority +metta_defn_ES( + ['ConclusionPriority',EPrio,CPrio,ConcTV], + [ *, + [*,EPrio,CPrio], + ['Truth_Expectation',ConcTV]]). + +%;making declarative inferences on two events (task from PQ and belief from concept) +metta_defn_ES( + [ 'Conclude', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + [ 'Event', + S2, + [Time2,Ev2,Prio2]], CPrio,T], + [ let, + ConclusionStamp, + ['TupleConcat',Ev1,Ev2], + [ 'If', + ['StampDisjoint',ConclusionStamp], + [ let, + [ConcTerm,ConcTV], + [ superpose, + [ [ '|-', S1 , S2 ], + [ '|-', S2 , S1 ]]], + [ 'Event', + [ConcTerm,ConcTV], + [ Time1, + ConclusionStamp, + [ T, + [ 'ConclusionPriority', + ['EventPriorityNow',Prio1,T], + ['ConceptPriorityNow',CPrio,T], + ConcTV]]]]]]]). + +%;find a belief for the task to generate conclusions with +metta_defn_ES( + [ 'ReasonWithTask', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + T], + [ let, + [Belief,CPrio], + [ case, + ['get-atoms','&attentional_focus'], + [ [ [ 'Concept', + Term, + [ 'Event', + SE2, + [TimeE2,EvE2,PrioE2]], + [ 'Event', + S2, + [Time2,Ev2,Prio2]], + CPrio], + [ 'If', + [ and, + [ not, + [==,Time1,eternal]], + [ >, + [ abs, + [-,Time1,Time2]], + 20]], + [ [ 'Event', + SE2, + [TimeE2,EvE2,PrioE2]], + Cprio], + [ [ 'Event', + S2, + [Time2,Ev2,Prio2]], + CPrio]]]]], + [ case, + [ 'Conclude', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + ['TemporallyAlignedBelief',Time1,Belief], CPrio,T], + [ [ ['Event',Num1,Num2], + [ 'ProcessBeliefEvent', + ['Event',Num1,Num2], + T]]]]]). + +%;select the highest priority belief event from the PQ and use it for reasoning +metta_defn_ES( + ['BeliefCycle',T], + [ do, + [ sequential, + [ [ let, + Ev, + ['SelectHighestPriorityEvent','&belief_events',T], + [ sequential, + [ [ 'remove-atom' ,'&belief_events', Ev ], + [ 'ReasonWithTask', Ev , T ]]]], + ['UpdateReasonerState'], + [ 'BoundEvents', '&belief_events',0.0,0.1, + ['BeliefEventsMax'], + T], + [ 'BoundAttention', 0.0,0.1, + ['AttentionalFocusConceptsMax'], + T]]]]). + +%;;Temporal inference (sequence and implication formation based on FIFO) +%;use the event's evidence to induce a time-independent belief which can be used in the future +metta_defn_ES( + ['Eternalize',Ev], + [ let, + [ 'Event', + [Term,TV], + [Time,Evidence,EPrio]], + Ev, + [ 'If', + [==,Time,eternal], + Ev, + [ 'Event', + [ Term, + ['Truth_Eternalize',TV]], + [ eternal, + Evidence, + [0,0.0]]]]]). + +%;use evidence of an event at a slightly different moment in time +metta_defn_ES( + [ 'Projection', + [ 'Event', + [ Term, + [F,C]], + [Time,Evidence,EPrio]], + TargetTime], + [ 'Event', + [ Term, + [ F, + [ *, + C, + [ min, + 1, + [ /, + 1, + [ abs, + [-,Time,TargetTime]]]]]]], + [TargetTime,Evidence,EPrio]]). + +%;make the belief occurrence time compatible with the task's +metta_defn_ES( + ['TemporallyAlignedBelief',TaskTime,Belief], + [ 'If', + [==,TaskTime,eternal], + ['Eternalize',Belief], + ['Projection',Belief,TaskTime]]). + +%;FIFO max. size bound +:-metta_eval(['bind!','&FIFO',['new-state',[]]]). + +metta_defn_ES(['ListFirstK',C,[]],[]). + +metta_defn_ES( + [ 'ListFirstK', + C, + [LH,LT]], + [ 'If', + [>,C,0], + [ LH, + [ 'ListFirstK', + [-,C,1], + LT]], + []]). + +%;Add event to FIFO +metta_defn_ES( + ['EventToFIFO',Ev], + [ let, + Newlist, + [ 'ListFirstK', + 3, + [ Ev, + ['get-state','&FIFO']]], + ['change-state!','&FIFO',Newlist]]). + +%;Form a sequence of two events +metta_defn_ES( + [ 'TemporalSequence', + Ev1, + [ 'Event', + [Term2,Truth2], + [Time2,Evidence2,EPrio2]]], + [ let, + [ 'Event', + [Term1,Truth1], + [Time1,Evidence1,EPrio1]], + ['Projection',Ev1,Time2], + [ 'Event', + [ [ Term1 , &/ , Term2 ], + [ 'Truth_Intersection', Truth1 , Truth2 ]], + [ Time2, + ['TupleConcat',Evidence1,Evidence2], + [0,0.0]]]]). + +%;Form a temporal implication between two events +metta_defn_ES( + [ 'TemporalImplication', + Ev1, + [ 'Event', + [Term2,Truth2], + [Time2,Evidence2,EPrio2]]], + [ let, + [ 'Event', + [Term1,Truth1], + [Time1,Evidence1,EPrio1]], + ['Projection',Ev1,Time2], + [ 'Event', + [ [ Term1 , =/> , Term2 ], + [ 'Truth_Induction', Truth1 , Truth2 ]], + [ Time2, + ['TupleConcat',Evidence1,Evidence2], + [0,0.0]]]]). + +%;Whether an event's term is an operation +metta_defn_ES( + [ 'IsOp', + [ 'Event', + [Term,Truth], + Metadata]], + [ case, + Term, + [ [ [^,Opname], + 'True'], + [Otherwise,'False']]]). + +%;Find implications in the event FIFO: +%;procedural implications +metta_defn_ES( + [ 'TemporalImplicationInduction', + [ Cons, + [ Op, + [Prec,Tail]]]], + [ 'If', + [ and, + ['IsOp',Op], + [ and, + [ not, + ['IsOp',Cons]], + [ not, + ['IsOp',Prec]]]], + [ let, + PrecOp, + ['TemporalSequence',Prec,Op], + ['TemporalImplication',PrecOp,Cons]]]). + +%;and temporal without operation +metta_defn_ES( + [ 'TemporalImplicationInduction', + [ Cons, + [Prec,Tail]]], + [ 'If', + [ and, + [ not, + ['IsOp',Prec]], + [ not, + ['IsOp',Cons]]], + ['TemporalImplication',Prec,Cons]]). + +%;Add negative evidence for implications which predicted the input unsuccessfully +metta_defn_ES( + ['NegConfirmation',PrecTerm,ObservedCons,T], + [ let, + [ 'Event', + [ [PrecTerm,=/>,PredictedCons], + ImpTV], + ImpMetadata], + [ 'EternalQuestion', + [PrecTerm,=/>,PredictedCons]], + [ 'If', + [ not, + [==,ObservedCons,PredictedCons]], + [ 'UpdateConcept', + [ 'Event', + [ [ PrecTerm , =/> ,PredictedCons], + [ 0.0 , 0.1 ]], + [ T, + [], + [0,0.0]]], + T]]]). + +%;Check if the implication's preconditions are met to anticipate the by the implication predicted outcome +get_metta_atom(Eq, '&self', [ + =, + [ 'Anticipate', + [Pos,[]], + T]]). + +metta_defn_ES( + [ 'Anticipate', + [ Pos, + [Pre,[]]], + T], + [ 'let*', + [ [ [ 'Event', + [PreTerm,PreTV], + PreMetadata], + Pre], + [ [ 'Event', + [PosTerm,PosTV], + PosMetadata], + Pos]], + [ 'If', + [ not, + ['IsOp',Pre]], + ['NegConfirmation',PreTerm,PosTerm,T]]]). + +metta_defn_ES( + [ 'Anticipate', + [ Pos, + [ Op, + [Pre,Trail]]], + T], + [ 'let*', + [ [ [ 'Event', + [PreTerm,PreTV], + PreMetadata], + Pre], + [ [ 'Event', + [OpTerm,OpTV], + OpMetadata], + Op], + [ [ 'Event', + [PosTerm,PosTV], + PosMetadata], + Pos], + [ Sequence, + [Pre,&/,'Pos']]], + [ 'If', + [ and, + ['IsOp',Op], + [ not, + ['IsOp',Pre]]], + [ 'NegConfirmation', + [PreTerm,&/,OpTerm], PosTerm,T]]]). + +%;;Input procedure +metta_defn_ES( + ['AddBeliefEvent',Sentence], + [ 'let*', + [ [ [ T , EvidentialBase ], + [ 'GetReasonerState']], + [ InputEvent, + [ 'Event', + Sentence, + [ T, + EvidentialBase, + [T,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',InputEvent], + [ let, + InducedHypothesis, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',InducedHypothesis,T]], + ['ProcessBeliefEvent',InputEvent,T], + [ 'Anticipate', + ['get-state','&FIFO'], + T], + ['BeliefCycle',T]]]]]). + +%;;Procedural inference (decision making with operation execution and subgoaling) +%;Derived goal event priority +metta_defn_ES( + ['SubgoalPriority',EPrio,ConcTV], + [ *, + EPrio, + ['Truth_Expectation',ConcTV]]). + +%;Expectation of an operation is the truth expectation of its desire value +metta_defn_ES( + [ 'OpExpectation', + [ 'Decision', + [Opname,DVOp], + Subgoal], + T], + ['Truth_Expectation',DVOp]). + +%;Inject executed operation as an event and return its name +metta_defn_ES( + ['Execute',Opname], + [ superpose, + [ [ 'AddBeliefEvent', + [ Opname, + [1.0,0.9]]], + Opname]]). + +%;Add subgoals to the PQ +metta_defn_ES( + ['DeriveSubgoals',Options], + [ do, + [ let, + ['Decision',Op,Subgoal], + [superpose,Options], + ['add-atom','&goal_events',Subgoal]]]). + +%;execute the operation which most likely gets the goal achieved in current contexts, and if contexts are not yet fulfilled, derive them as subgoals +metta_defn_ES( + [ 'BestDecision', + T, + [ 'Event', + [Term,DV], + [GoalTime,GoalEvBase,GoalPrio]], + FIFO], + [ let, + Options, + [ collapse, + [ 'let*', + [ [ [ 'Event', + [ [ [ Prec, + &/, + [^,Op]], =/>,Term], + ImpTV], + [ImpTime,ImpEvBase,ImpPrio]], + [ 'EternalQuestion', + [ [ Prec, + &/, + [^,Op]], =/>,Term]]], + [ DVPrecOp, + ['Truth_Deduction',DV,ImpTV]], + [ [ 'Event', + [PrecTerm,PrecTV], + PrecMetadata], + [ 'Projection', + ['EventQuestion',Prec], + T]], + [ DVOp, + ['Truth_Deduction',PrecTV,DVPrecOp]], + [ DVPrec, + ['Truth_StructuralDeduction',DVPrecOp]], + [ SubgoalStamp, + ['TupleConcat',GoalEvBase,ImpEvBase]]], + [ 'If', + ['StampDisjoint',SubgoalStamp], + [ 'Decision', + [ [^,Op], + DVOp], + [ 'Event', + [ Prec, + ['Truth_StructuralDeduction',DVPrecOp]], + [ T, + SubgoalStamp, + [ T, + [ 'SubgoalPriority', + ['EventPriorityNow',GoalPrio,T], + DVPrec]]]]]]]], + [ let, + [ 'Decision', + [Opname,DVOp], + Subgoal], + ['BestCandidate',Options,'OpExpectation',T], + [ 'If', + [ >, + ['Truth_Expectation',DVOp], + 0.5], + ['Execute',Opname], + ['DeriveSubgoals',Options]]]]). + +%;;select the highest priority goal event from the PQ and use it for decision making +metta_defn_ES( + ['GoalCycle',T], + [ sequential, + [ [ let, + Ev, + ['SelectHighestPriorityEvent','&goal_events',T], + [ sequential, + [ [ do, + ['remove-atom','&goal_events',Ev]], + [ 'BestDecision', T,Ev, + ['get-state','&FIFO']]]]], + [ do, + ['UpdateReasonerState']], + [ do, + [ 'BoundEvents', '&goal_events',0.0,0.1, + ['GoalEventsMax'], + T]]]]). + +%;;Input procedure +metta_defn_ES( + ['AddGoalEvent',Sentence], + [ 'let*', + [ [ [ T , EvidentialBase ], + [ 'GetReasonerState']], + [ InputEvent, + [ 'Event', + Sentence, + [ T, + EvidentialBase, + [T,1.0]]]]], + [ sequential, + [ [ do, + ['add-atom','&goal_events',InputEvent]], + ['GoalCycle',T]]]]). + +:-metta_eval([print,'$STRING'("NARS test!!!!!!!!!!!!!!!!!!")]). + +:-metta_eval(['metta_learner::vspace-main']). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +%;The following question needs both a deduction and abduction step: +( :- ( + metta_eval( [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.2965825874694874)) (eternal (Cons 2 (Cons 1 (Cons 3 Nil))) 0.643288027761712))] +%;Lets stress the control mechanism as these type of events with common extension or intension causes dozens of derivations: +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ A ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'A',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'A',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ B ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'B',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'B',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ C ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'C',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'C',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +:-metta_eval(['EternalQuestion',[['A',&,'B'],-->,cat]]). + +metta_defn_ES( + [ 'EternalQuestion', + [['A',&,'B'],-->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [['A',&,'B'],-->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((A & B) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 4 (Cons 5 Nil)) (5 0.4525)))] +:-metta_eval(['EternalQuestion',[['B',&,'C'],-->,cat]]). + +metta_defn_ES( + [ 'EternalQuestion', + [['B',&,'C'],-->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [['B',&,'C'],-->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((B & C) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 5 (Cons 6 Nil)) (6 0.4525)))] +( :- ( + metta_eval( [ 'EternalQuestion', + [ [['A',&,'B'],&,'C'], -->,cat]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [['A',&,'B'],&,'C'], -->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [['A',&,'B'],&,'C'], -->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event ((((A & B) & C) --> cat) (1.0 0.42163100057836905)) (eternal (Cons 5 (Cons 4 (Cons 6 Nil))) (6 0.195593125))) +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.5692683291397822)) (eternal (Cons 7 (Cons 2 (Cons 1 (Cons 3 Nil)))) 0.0))] +%;Please notice that it has revised it with the prior derived result, as you can also see in the evidence trail 1,2,3 being included +:-metta_eval(['metta_learner::vspace-main']). + +%;debug: +:-metta_eval(['CollapseCardinality',['get-atoms','&belief_events']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&belief_events']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&belief_events']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&belief_events']], + [ case, + ['get-atoms','&belief_events'], + [ [ _,1]]]). + +%;[8] +:-metta_eval(['CollapseCardinality',['get-atoms','&attentional_focus']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&attentional_focus']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&attentional_focus']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&attentional_focus']], + [ case, + ['get-atoms','&attentional_focus'], + [ [ _,1]]]). + +%;[8] +:-metta_eval(['CollapseCardinality',['get-atoms','&concepts']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&concepts']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&concepts']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&concepts']], + [ case, + ['get-atoms','&concepts'], + [ [ _,1]]]). + +%;[100] +:-metta_eval(['metta_learner::vspace-main']). + +% 17,439,387 inferences, 1.561 CPU in 1.572 seconds (99% CPU, 11172049 Lips) + diff --git a/metta_vspace/pyswip-12-15/metta_testing.pl b/metta_vspace/pyswip-12-15/metta_testing.pl new file mode 100755 index 00000000..ef36d30c --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_testing.pl @@ -0,0 +1,1174 @@ +/* + this is part of (H)MUARC https://logicmoo.org/xwiki/bin/view/Main/ARC/ + + This work may not be copied and used by anyone other than the author Douglas Miles + unless permission or license is granted (contact at business@logicmoo.org) +*/ +%:- encoding(iso_latin_1). + +:- ensure_loaded(library(occurs)). +:- ensure_loaded(metta_utils). + +% Reset loonit counters +loonit_reset :- + flush_output, + loonit_report, + flush_output, + flag(loonit_failure, _, 0), + flag(loonit_success, _, 0). + +has_loonit_results :- loonit_number(FS),FS>1. + +loonit_number(FS) :- flag(loonit_test_number,FS,FS),FS>0,!. +loonit_number(FS) :- + flag(loonit_success, Successes, Successes), + flag(loonit_failure, Failures, Failures), + FS is Successes+Failures+1. + + +string_replace(Original, Search, Replace, Replaced) :- + atomic_list_concat(Split, Search, Original), + atomic_list_concat(Split, Replace, Replaced),!. + +get_test_name(Number,TestName) :- + ((nb_current(loading_file,FilePath),FilePath\==[])->true; FilePath='SOME/UNIT-TEST'), + make_test_name(FilePath, Number, TestName). + +ensure_basename(FilePath,FilePath):- \+ directory_file_path(('.'), _, FilePath),!. +ensure_basename(FilePath0,FilePath):- + absolute_file_name(FilePath0,FilePath),!. +ensure_basename(FilePath,FilePath). + +make_test_name(FilePath0, Number, TestName) :- + % Extract the file name and its parent directory from the file path + ensure_basename(FilePath0,FilePath), + file_base_name(FilePath, FileName), + directory_file_path(ParentDir, FileName, FilePath), + file_base_name(ParentDir, ParentDirBase), + % Remove file extension + file_name_extension(Base, _, FileName), + % Convert to uppercase + string_upper(ParentDirBase, UpperParentDirBase), + string_upper(Base, UpperBase), + % Replace "_" with "-" + string_replace(UpperBase, "_", "-", NoUnderscore), + string_replace(UpperParentDirBase, "_", "-", NoUnderscoreParent), + % Format the test name + wots(NS,format('~`0t~d~2|',[Number])), + format(string(TestName), "~w.~w.~w", [NoUnderscoreParent, NoUnderscore, NS]). + + +%color_g_mesg(C,G):- silent_loading,!. +color_g_mesg(C,G):- notrace((nop(check_silent_loading),color_g_mesg_ok(C,G))). +color_g_mesg_ok(C,G):- + quietly(( + wots(S,must_det_ll(user:G)), + (S == "" -> true ; our_ansi_format(C, '~w~n', [S])))),!. + +our_ansi_format(C, Fmt,Args):- \+ atom(C), % set_stream(current_output,encoding(utf8)), + ansi_format(C, Fmt,Args). +our_ansi_format(C, Fmt,Args):- our_ansi_format([fg(C)], Fmt,Args). + +print_current_test:- + loonit_number(Number), + get_test_name(Number,TestName),format(';

    ;; ~w

    ~n',[TestName,TestName]). + +% Increment loonit counters based on goal evaluation +loonit_asserts(S,Pre,G):- + flag(loonit_test_number,X,X+1), + copy_term(Pre,Pro), + print_current_test, + once(Pre), + ((nb_current(exec_src,Exec),Exec\==[])->true;S=Exec), + % wots(S,((((nb_current(exec_src,WS),WS\==[])->writeln(WS);write_src(exec(TestSrc)))))), + once(loonit_asserts1(Exec,Pro,G)). + +give_pass_credit(TestSrc,_Pre,_G):- + inside_assert(TestSrc,BaseEval), + always_exec(BaseEval),!. +give_pass_credit(TestSrc,_Pre,G):- + write_pass_fail(TestSrc,'PASS',G), + flag(loonit_success, X, X+1),!, + color_g_mesg(cyan,write_src(loonit_success(G))),!. + +write_pass_fail([P,C,_],PASS_FAIL,G):- + must_det_ll(( + loonit_number(Number), + get_test_name(Number,TestName), + arg(1,G,G1),arg(2,G,G2), write_pass_fail(TestName,P,C,PASS_FAIL,G1,G2))). + +write_pass_fail(TestName,P,C,PASS_FAIL,G1,G2):- + ignore((( + (nb_current(loading_file,FilePath),FilePath\==[])->true; FilePath='SOME/UNIT-TEST.metta'), + atomic_list_concat([_,R],'examples/',FilePath), + file_name_extension(Base, _, R))), + nop(format('

    ;; ~w

    ',[TestName,TestName])), + + if_t( (tee_file(TEE_FILE)->true;'TEE.ansi'=TEE_FILE), + (%atom_concat(TEE_FILE,'.UNITS',UNITS), + UNITS = '/tmp/SHARED.UNITS', + open(UNITS, append, Stream,[encoding(utf8)]), + format(Stream,'| ~w | [~w](https://htmlpreview.github.io/?https://raw.githubusercontent.com/logicmoo/vspace-metta/main/reports/cuRRent/~w.metta.html#~w) | ~@ | ~@ | ~@ |~n', + [PASS_FAIL,TestName,Base,TestName,trim_gstring(with_indents(false,write_src([P,C])),200), + trim_gstring(with_indents(false,write_src(G1)),100),with_indents(false,write_src(G2))]),!, + close(Stream))). + +trim_gstring(Goal, MaxLen) :- + wots(String,Goal), + atom_length(String, Len), + ( Len =< MaxLen + -> Trimmed = String + ; SubLen is MaxLen, + sub_atom(String, 0, SubLen, _, SubStr), + string_concat(SubStr, "...", Trimmed) + ), + write(Trimmed). + +loonit_asserts1(TestSrc,Pre,G) :- nop(Pre), + call(G), !, + give_pass_credit(TestSrc,Pre,G),!. + +loonit_asserts1(TestSrc,Pre,G) :- + sub_var('BadType',TestSrc), \+ check_type,!, + write('\n!check_type (not considering this a failure)\n'), + color_g_mesg('#D8BFD8',write_src(loonit_failureR(G))),!, + ignore((( + option_value('on-fail','trace'), + setup_call_cleanup(debug(metta(eval)),call((Pre,G)),nodebug(metta(eval)))))). + + +loonit_asserts1(TestSrc,Pre,G) :- + write_pass_fail(TestSrc,'FAIL',G), + ((sub_var('BadType',TestSrc), \+ check_type) -> write('\n!check_type (not considering this a failure)\n') ; + flag(loonit_failure, X, X+1)), !, + color_g_mesg(red,write_src(loonit_failureR(G))),!, + %itrace, G. + ignore((( + option_value('on-fail','trace'), + setup_call_cleanup(debug(metta(eval)),call((Pre,G)),nodebug(metta(eval)))))). + %(thread_self(main)->trace;sleep(0.3)) + +% Generate loonit report with colorized output +:- dynamic(gave_loonit_report/0). +loonit_report:- gave_loonit_report,!. +loonit_report :- +% assert(gave_loonit_report), + flag(loonit_success, Successes, Successes), + flag(loonit_failure, Failures, Failures), + loonit_report(Successes,Failures). + +:- at_halt(loonit_report). + + +loonit_report(0,0):-!. % ansi_format([fg(yellow)], 'Nothing to report~n', []). +loonit_report(Successes,Failures):- + ansi_format([bold], 'LoonIt Report~n',[]), + format('------------~n'), + ansi_format([fg(green)], 'Successes: ~w~n', [Successes]), + ((integer(Failures),Failures>0) -> ansi_format([fg(red)], 'Failures: ~w~n', [Failures]);ansi_format([fg(green)], 'Failures: ~w~n', [Failures])). + +% Resets loonit counters, consults the given file, and prints the status report. +loon_metta(File) :- + flag(loonit_success, WasSuccesses, 0), + flag(loonit_failure, WasFailures, 0), + load_metta(File), + loonit_report, + flag(loonit_success, _, WasSuccesses), + flag(loonit_failure, _, WasFailures),!. + + +:- dynamic(file_answers/3). +:- dynamic(file_exec_num/2). + +% set_exec_num/2 +% Update or assert the execution number for the given file. + +set_exec_num(SFileName, Val) :- + absolute_file_name(SFileName,FileName), + ( retract(file_exec_num(FileName, _)) % If an entry exists, retract it + -> true + ; true % Otherwise, do nothing + ), + asserta(file_exec_num(FileName, Val)). % Assert the new value + +% get_exec_num/2 +% Retrieve the execution number for the given file. If none exists, it returns 0. +get_exec_num(Val):- + current_exec_file_abs(FileName), + file_exec_num(FileName, Val),!. +get_exec_num(FileName, Val) :- + ( file_exec_num(FileName, CurrentVal) + -> Val = CurrentVal + ; Val = 0 + ). + + current_exec_file_abs(FileName):- + current_exec_file(SFileName), + absolute_file_name(SFileName,FileName),!. + + +get_expected_result(Ans):- + ignore(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + file_answers(FileName, Nth, Ans))),!. + + + +got_exec_result(Val):- + ignore(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + file_answers(FileName, Nth, Ans), + got_exec_result(Val,Ans))). + + +got_exec_result(Val,Ans):- + must_det_ll(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + (equal_enough_for_test(Val,Ans) + -> write_pass_fail_result(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result(TestName,exec,Exec,'FAIL',Ans,Val)))). + +write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,writeq(write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val)),nl, + write_pass_fail(TestName,exec,Exec,PASS_FAIL,Ans,Val). + + +current_exec_file(FileName):- nb_current(loading_file,FileName). + +% inc_exec_num/1 +% Increment the execution number for the given file. If no entry exists, initialize it to 1. +inc_exec_num :- current_exec_file_abs(FileName),!,inc_exec_num(FileName). +inc_exec_num(FileName) :- + ( retract(file_exec_num(FileName, CurrentVal)) + -> NewVal is CurrentVal + 1 + ; NewVal = 1 + ), + asserta(file_exec_num(FileName, NewVal)). + + +load_answer_file(File):- ( \+ atom(File); \+ is_absolute_file_name(File); \+ exists_file(File)), + absolute_file_name(File,AbsFile), File\=@=AbsFile, load_answer_file_now(AbsFile),!. +load_answer_file(File):- load_answer_file_now(File),!. +load_answer_file_now(File) :- + ignore(( + ensure_extension(File, answers, AnsFile), + remove_specific_extension(AnsFile, answers, StoredAs), + set_exec_num(StoredAs,1), + fbug(load_answer_file(AnsFile,StoredAs)), + load_answer_file(AnsFile,StoredAs))). + +load_answer_file(AnsFile,StoredAs):- + ( file_answers(StoredAs,_, _) -> true + ; ( \+ exists_file(AnsFile) -> true + ; (setup_call_cleanup( + open(AnsFile, read, Stream, [encoding(utf8)]), + (load_answer_stream(1,StoredAs, Stream)), + close(Stream))))), + set_exec_num(StoredAs,1),!. + +:- debug(metta(answers)). +load_answer_stream(_Nth, StoredAs, Stream):- at_end_of_stream(Stream),!, + if_trace(metta(answers), + prolog_only(listing(file_answers(StoredAs,_,_)))). +load_answer_stream(Nth, StoredAs, Stream):- + read_line_to_string(Stream, String), + load_answer_stream(Nth, StoredAs, String, Stream). +/* +load_answer_stream(Nth, StoredAs, String, Stream) :- fail, + atom_chars(String,Chars), + count_brackets(Chars, 0, 0, Balance), + ( Balance =< 0 + -> StoredAs = String + ; read_line_to_string(Stream, NextString), + string_concat(String, "\n", StringWithNewLine), + string_concat(StringWithNewLine, NextString, CombinedString), + load_answer_stream(Nth, StoredAs, CombinedString, Stream) + ). +*/ +load_answer_stream(Nth, StoredAs, String, Stream):- % string_concat("[",_,String),!, + fbug(Nth = String), + parse_answer_string(String,Metta),!, + %if_t(sub_var(',',Metta),rtrace(parse_answer_string(String,_Metta2))), + assert(file_answers(StoredAs,Nth,Metta)), + skip(must_det_ll(\+ sub_var(',',Metta))), + Nth2 is Nth+1,load_answer_stream(Nth2, StoredAs, Stream). + +load_answer_stream(Nth, StoredAs, _, Stream):- load_answer_stream(Nth, StoredAs, Stream). +/* +count_brackets([], Open, Close, Balance) :- !, + Balance is Open - Close. +count_brackets([Char|Rest], Open, Close, Balance) :- + (((( Char == '[' + -> NewOpen is Open + 1 + ; (Char == ']' + -> NewClose is Close + 1 + ; (NewOpen = Open, + NewClose = Close)))))), + count_brackets(Rest, NewOpen, NewClose, Balance). +*/ +parse_answer_string("[]",[]):- !. +%parse_answer_string(String,Metta):- string_concat("(",_,String),!,parse_sexpr_metta(String,Metta),!. +parse_answer_string(String,_Metta):- string_concat("[(Error (assert",_,String),!,fail. +parse_answer_string(String,_Metta):- string_concat("Expected: [",Mid,String),string_concat(_Expected_Inner,"]",Mid),!,fail. +parse_answer_string(String,Metta):- string_concat("Got: [",Mid,String),string_concat(Got_Inner,"]",Mid),!,parse_answer_inner(Got_Inner,Metta). +parse_answer_string(String,Metta):- string_concat("[",Mid,String),string_concat(Inner0,"]",Mid),!,parse_answer_inner(Inner0,Metta). + + +parse_answer_inner(Inner0,Metta):- must_det_ll(( replace_in_string([', '=' , '],Inner0,Inner), parse_answer_str(Inner,Metta), + skip((\+ sub_var(',',rc(Metta)))))). + +parse_answer_str(Inner,[C|Metta]):- + atomics_to_string(["(",Inner,")"],Str), + parse_sexpr_metta(Str,CMettaC), CMettaC=[C|MettaC], + ((remove_m_commas(MettaC,Metta), + \+ sub_var(',',rc(Metta)))). +parse_answer_str(Inner0,Metta):- atomic_list_concat(InnerL,' , ',Inner0), maplist(atom_string,InnerL,Inner), maplist(parse_sexpr_metta,Inner,Metta),skip((must_det_ll(( \+ sub_var(',',rc2(Metta)))))),!. +parse_answer_str(Inner0,Metta):- + (( replace_in_string([' , '=' '],Inner0,Inner), + atomics_to_string(["(",Inner,")"],Str),!, + parse_sexpr_metta(Str,Metta),!, + skip((must_det_ll(\+ sub_var(',',rc3(Metta))))), + skip((\+ sub_var(',',rc(Metta)))))). + +%parse_answer_string(String,Metta):- String=Metta,!,fail. + +remove_m_commas(Metta,Metta):- \+ sub_var(',',Metta),!. +remove_m_commas([C,H|T],[H|TT]):- C=='and', !, remove_m_commas(T,TT). +remove_m_commas([C,H|T],[H|TT]):- C==',', !, remove_m_commas(T,TT). +remove_m_commas([H|T],[H|TT]):- !, remove_m_commas(T,TT). + + +% Example usage: +% ?- change_extension('path/to/myfile.txt', 'pdf', NewFileName). +% NewFileName = 'path/to/myfile.pdf'. +change_extension(OriginalFileName, NewExtension, NewBaseName) :- + %file_base_name(OriginalFileName, BaseName), % Extract base name + file_name_extension(BaseWithoutExt, _, OriginalFileName), % Split extension + file_name_extension(BaseWithoutExt, NewExtension, NewBaseName),!. % Create new base name with new extension + %directory_file_path(Directory, NewBaseName, NewFileName). % Join with directory path +% Example usage: +% ?- ensure_extension('path/to/myfile.txt', 'txt', NewFileName). +% NewFileName = 'path/to/myfile.txt'. +ensure_extension(OriginalFileName, Extension, NewFileName) :- + file_name_extension(_, CurrentExt, OriginalFileName), + ( CurrentExt = Extension + -> NewFileName = OriginalFileName + ; atom_concat(OriginalFileName, '.', TempFileName), + atom_concat(TempFileName, Extension, NewFileName) + ). +% Example usage: +% ?- remove_specific_extension('path/to/myfile.txt', 'txt', NewFileName). +% NewFileName = 'path/to/myfile'. + +% ?- remove_specific_extension('path/to/myfile.txt', 'pdf', NewFileName). +% NewFileName = 'path/to/myfile.txt'. +remove_specific_extension(OriginalFileName, Extension, FileNameWithoutExtension) :- + file_name_extension(FileNameWithoutExtension, Ext, OriginalFileName), + ( Ext = Extension -> true ; FileNameWithoutExtension = OriginalFileName ). + + +quick_test:- + %set_prolog_flag(encoding,iso_latin_1), + forall(quick_test(Test), + forall(open_string(Test,Stream), + load_metta_stream('&self',Stream))). + +/* + tests for term expander + + +*/ +% :- debug(term_expansion). +:- if(debugging(term_expansion)). +:- enable_arc_expansion. +:- style_check(-singleton). +dte:- set(_X.local) = val. +dte:- gset(_X.global) = gval. +dte:- must_det_ll((set(_X.a) = b)). +dte:- must_det_ll(locally(nb_setval(e,X.locally),dte([foo|set(X.tail)]))). +dte:- member(set(V.element),set(V.list)). +dte(set(E.v)):- set(E.that)=v. +:- style_check(+singleton). +:- disable_arc_expansion. +:- listing(dte). +:- endif. + + + +% 1. Recursive Approach +factorial_recursive(0, 1). +factorial_recursive(N, Result) :- + N > 0, + N1 is N - 1, + factorial_recursive(N1, Result1), + Result is N * Result1. + +% 2. Tail Recursive Approach +factorial_tail_recursive(N, Result) :- factorial_tail_helper(N, 1, Result). + +factorial_tail_helper(0, Acc, Acc). +factorial_tail_helper(N, Acc, Result) :- + N > 0, + NewAcc is Acc * N, + N1 is N - 1, + factorial_tail_helper(N1, NewAcc, Result). + +% 3. Accumulator Approach +factorial_accumulator(N, Result) :- factorial_acc(N, 1, Result). + +factorial_acc(0, Result, Result). +factorial_acc(N, Acc, Result) :- + N > 0, + NewAcc is Acc * N, + N1 is N - 1, + factorial_acc(N1, NewAcc, Result). + +% You can test each one by querying, for example: +% ?- factorial_recursive(5, X + + + + + + +% Example-usage +example_usages :- + fetch_or_create_space(newSpace,Space), % Assuming fetch_or_create_space/1 is defined to initialize a space + 'add-atom'(Space, a), + 'add-atom'(Space, b), + 'add-atom'(Space, c), + 'match'(Space, a, Template), + write('Matched template: '), writeln(Template), + + + write('Initial space: '), writeln(Space), + + 'add-atom'(Space, a), + write('Space after adding "a": '), writeln(Space), + + 'add-atom'(Space, b), + write('Space after adding "b": '), writeln(Space), + + 'replace-atom'(Space, a, c), + write('Space after replacing "a" with "c": '), writeln(Space), + + 'get-atoms'(Space, Atoms), + write('Atoms in space: '), writeln(Atoms), + + 'atom-count'(Space, Count), + write('Number of atoms in space: '), writeln(Count). + +% Test case for clearing a space +test_clear_space :- + writeln('Test: Clearing a space'), + init_space('&kb1'), + 'add-atom'('&kb1', a), + 'add-atom'('&kb1', b), + writeln('Expected Count Before Clearing: 2'), + 'atom-count'('&kb1', CountBefore), writeln('Actual Count:'), writeln(CountBefore), + writeln('Expected Atoms Before Clearing: [b, a]'), + 'get-atoms'('&kb1', AtomsBefore), writeln('Actual Atoms:'), writeln(AtomsBefore), + 'clear-atoms'('&kb1'), + writeln('Expected Count After Clearing: 0'), + 'atom-count'('&kb1', CountAfter), writeln('Actual Count:'), writeln(CountAfter), + writeln('Expected Atoms After Clearing: []'), + 'get-atoms'('&kb1', AtomsAfter), writeln('Actual Atoms:'), writeln(AtomsAfter). + +% Test case for various operations on a space +test_operations :- + writeln('Test: Various Operations on a Space'), + init_space('&kb2'), + 'add-atom'('&kb2', a), + 'add-atom'('&kb2', b), + writeln('Expected Count After Adding: 2'), + 'atom-count'('&kb2', Count1), writeln('Actual Count:'), writeln(Count1), + writeln('Expected Atoms After Adding: [b, a]'), + 'get-atoms'('&kb2', Atoms1), writeln('Actual Atoms:'), writeln(Atoms1), + 'remove-atom'('&kb2', a), + writeln('Expected Atoms After Removing a: [b]'), + 'get-atoms'('&kb2', Atoms2), writeln('Actual Atoms:'), writeln(Atoms2), + 'replace-atom'('&kb2', b, c), + writeln('Expected Atoms After Replacing b with c: [c]'), + 'get-atoms'('&kb2', Atoms3), writeln('Actual Atoms:'), writeln(Atoms3). + +% Run the test cases +run_tests :- + writeln('Running test_clear_space:'), + test_clear_space, + writeln('---'), + writeln('Running test_operations:'), + test_operations. + + +% Test case for various operations on a space +test_my_space :- + fetch_or_create_space('&KB', InstanceOfKB), + 'clear-atoms'('&KB'), + 'add-atom'(InstanceOfKB, a), + 'add-atom'(InstanceOfKB, b), + 'atom-count'(InstanceOfKB, Count1), + writeln('Should print 2: ' : Count1), + + 'get-atoms'(InstanceOfKB, Atoms1), + writeln('Should print [b, a]: ' : Atoms1), + + 'remove-atom'(InstanceOfKB, a), + 'get-atoms'(InstanceOfKB, Atoms2), + writeln('Should print [b]: ' : Atoms2), + + 'replace-atom'(InstanceOfKB, b, c), + 'get-atoms'(InstanceOfKB, Atoms3), + writeln('Should print [c]: ' : Atoms3), + + space_original_name(InstanceOfKB, OriginalName), + writeln('Should print &KB':OriginalName), + + fetch_or_create_space('&KB'), + 'add-atom'('&KB', x), + 'add-atom'('&KB', y), + 'atom-count'('&KB', Count2), + writeln('Should print 3: ' : Count2), + + 'get-atoms'('&KB', Atoms4), + writeln('Should print [c, y, x]: ' : Atoms4), + + 'remove-atom'('&KB', x), + 'get-atoms'('&KB', Atoms5), + writeln('Should print [c,y]: ' : Atoms5), + + 'replace-atom'('&KB', y, z), + 'get-atoms'(InstanceOfKB, Atoms6), + writeln('Should print [c,z]: ' : Atoms6). + + +% Test the code +test_clr_my_kb22 :- + fetch_or_create_space('&kb22'), + 'add-atom'('&kb22', a), + 'add-atom'('&kb22', b), + 'atom-count'('&kb22', Count1), writeln(Count1), + 'get-atoms'('&kb22', Atoms1), writeln(Atoms1), + 'clear-atoms'('&kb22'), + 'atom-count'('&kb22', Count2), writeln(Count2), + 'get-atoms'('&kb22', Atoms2), writeln(Atoms2). + +% Test the code +test_my_kb2:- + fetch_or_create_space('&kb1', InstanceOfKB), + \+ \+ ('add-atom'('&kb1', a)), + \+ \+ ('add-atom'('&kb1', b)), + \+ \+ ('atom-count'('&kb1', Count), writeln(Count)), + \+ \+ ('get-atoms'('&kb1', Atoms), writeln(Atoms)), + \+ \+ ('remove-atom'(InstanceOfKB, a)), + \+ \+ ('get-atoms'('&kb1', NewAtoms), writeln(NewAtoms)), + \+ \+ ('replace-atom'('&kb1', b, c)), + \+ \+ ('get-atoms'('&kb1', FinalAtoms), writeln(FinalAtoms)), + \+ \+ (space_original_name(InstanceOfKB, OriginalName), writeln(OriginalName)), + \+ \+ (fetch_or_create_space('&kb2',_)), % Creating a new space with a different name + \+ \+ ('add-atom'('&kb2', a)), + \+ \+ ('add-atom'('&kb2', b)), + \+ \+ ('atom-count'('&kb2', Count), writeln(Count)), + \+ \+ ('get-atoms'('&kb2', Atoms), writeln(Atoms)), + \+ \+ ('remove-atom'('&kb2', a)), + \+ \+ ('get-atoms'('&kb2', NewAtoms), writeln(NewAtoms)), + \+ \+ ('replace-atom'('&kb2', b, c)), + \+ \+ ('get-atoms'('&kb2', FinalAtoms), writeln(FinalAtoms)). + + + + +end_of_file. % comment this out once to get these files in your readline history +mf('./1-VSpaceTest.metta'). +mf('./2-VSpaceTest.metta'). +mf('./3-Learn-Rules.metta'). +mf('./4-VSpaceTest.metta'). +mf('./5-Learn-Flybase.metta'). +mf('./6-Learn-Flybase-Full.metta'). +mf('./8-VSpaceTest.metta'). +mf('./autoexec.metta'). +mf('./data/OBO-Metta/export/Alliance_of_Genome_Resources.metta'). +mf('./data/OBO-Metta/export/biosapiens.metta'). +mf('./data/OBO-Metta/export/chebi_fb_2023_04.metta'). +mf('./data/OBO-Metta/export/DBVAR.metta'). +mf('./data/OBO-Metta/export/doid.metta'). +mf('./data/OBO-Metta/export/flybase_controlled_vocabulary.metta'). +mf('./data/OBO-Metta/export/flybase_stock_vocabulary.metta'). +mf('./data/OBO-Metta/export/fly_anatomy.metta'). +mf('./data/OBO-Metta/export/fly_development.metta'). +mf('./data/OBO-Metta/export/gene_group_FB2023_04.metta'). +mf('./data/OBO-Metta/export/go-basic.metta'). +mf('./data/OBO-Metta/export/image.metta'). +mf('./data/OBO-Metta/export/psi-mi.metta'). +mf('./data/OBO-Metta/export/slice.chebi.metta'). +mf('./data/OBO-Metta/export/so-simple.metta'). +mf('./data/OBO-Metta/export/so.metta'). +mf('./data/OBO-Metta/export/SOFA.metta'). +mf('./examples/compat/common/BelieveMe.metta'). +mf('./examples/compat/common/EqualityType.metta'). +mf('./examples/compat/common/EqualityTypeTest.metta'). +mf('./examples/compat/common/formula/DeductionFormula.metta'). +mf('./examples/compat/common/formula/DeductionFormulaTest.metta'). +mf('./examples/compat/common/formula/ImplicationDirectIntroductionFormula.metta'). +mf('./examples/compat/common/formula/ModusPonensFormula.metta'). +mf('./examples/compat/common/In.metta'). +mf('./examples/compat/common/InTest.metta'). +mf('./examples/compat/common/List.metta'). +mf('./examples/compat/common/ListTest.metta'). +mf('./examples/compat/common/Maybe.metta'). +mf('./examples/compat/common/MaybeTest.metta'). +mf('./examples/compat/common/Num.metta'). +mf('./examples/compat/common/NumTest.metta'). +mf('./examples/compat/common/OrderedSet.metta'). +mf('./examples/compat/common/OrderedSetTest.metta'). +mf('./examples/compat/common/Record.metta'). +mf('./examples/compat/common/truthvalue/EvidentialTruthValue.metta'). +mf('./examples/compat/common/truthvalue/EvidentialTruthValueTest.metta'). +mf('./examples/compat/common/truthvalue/MeasEq.metta'). +mf('./examples/compat/common/truthvalue/TemporalTruthValue.metta'). +mf('./examples/compat/common/truthvalue/TruthValue.metta'). +mf('./examples/compat/common/truthvalue/TruthValueTest.metta'). +mf('./examples/compat/dependent-types/DeductionDTL.metta'). +mf('./examples/compat/dependent-types/DeductionDTLTest.metta'). +mf('./examples/compat/dependent-types/DeductionImplicationDirectIntroductionDTLTest.metta'). +mf('./examples/compat/dependent-types/ImplicationDirectIntroductionDTL.metta'). +mf('./examples/compat/dependent-types/ImplicationDirectIntroductionDTLTest.metta'). +mf('./examples/compat/dependent-types/ModusPonensDTL.metta'). +mf('./examples/compat/dependent-types/ModusPonensDTLTest.metta'). +mf('./examples/compat/entail/DeductionEntail.metta'). +mf('./examples/compat/entail/DeductionEntailTest.metta'). +mf('./examples/compat/entail/ImplicationDirectIntroductionEntail.metta'). +mf('./examples/compat/entail/ImplicationDirectIntroductionEntailTest.metta'). +mf('./examples/compat/equal/DeductionEqual.metta'). +mf('./examples/compat/equal/DeductionEqualTest.metta'). +mf('./examples/compat/equal/ImplicationDirectIntroductionEqual.metta'). +mf('./examples/compat/equal/ImplicationDirectIntroductionEqualTest.metta'). +mf('./examples/compat/match/DeductionImplicationDirectIntroductionMatchTest.metta'). +mf('./examples/compat/match/DeductionMatch.metta'). +mf('./examples/compat/match/DeductionMatchTest.metta'). +mf('./examples/compat/match/ImplicationDirectIntroductionMatch.metta'). +mf('./examples/compat/match/ImplicationDirectIntroductionMatchTest.metta'). +mf('./examples/compat/prob-dep-types/inf_order_probs.metta'). +mf('./examples/compat/prob-dep-types/prob_dep_types.metta'). +mf('./examples/compat/recursion-schemes/src/base.metta'). +mf('./examples/compat/recursion-schemes/src/examples/benchmark.metta'). +mf('./examples/compat/recursion-schemes/src/examples/expression.metta'). +mf('./examples/compat/recursion-schemes/src/schemes.metta'). +mf('./examples/compat/synthesis/experiments/non-determinism.metta'). +mf('./examples/compat/synthesis/experiments/self-contained-synthesize.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-case-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-case.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-let-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-let.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-superpose.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-type-checking.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-unify-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-unify.metta'). +mf('./examples/compat/synthesis/experiments/unify-via-case.metta'). +mf('./examples/compat/synthesis/experiments/unify-via-let.metta'). +mf('./examples/compat/synthesis/Synthesize.metta'). +mf('./examples/compat/synthesis/SynthesizeTest.metta'). +mf('./examples/compat/synthesis/Unify.metta'). +mf('./examples/compat/synthesis/UnifyTest.metta'). +mf('./examples/compat/test_scripts/a1_symbols.metta'). +mf('./examples/compat/test_scripts/a2_opencoggy.metta'). +mf('./examples/compat/test_scripts/a3_twoside.metta'). +mf('./examples/compat/test_scripts/b0_chaining_prelim.metta'). +mf('./examples/compat/test_scripts/b1_equal_chain.metta'). +mf('./examples/compat/test_scripts/b2_backchain.metta'). +mf('./examples/compat/test_scripts/b3_direct.metta'). +mf('./examples/compat/test_scripts/b4_nondeterm.metta'). +mf('./examples/compat/test_scripts/b5_types_prelim.metta'). +mf('./examples/compat/test_scripts/c1_grounded_basic.metta'). +mf('./examples/compat/test_scripts/c2_spaces.metta'). +mf('./examples/compat/test_scripts/c2_spaces_kb.metta'). +mf('./examples/compat/test_scripts/c3_pln_stv.metta'). +mf('./examples/compat/test_scripts/d1_gadt.metta'). +mf('./examples/compat/test_scripts/d2_higherfunc.metta'). +mf('./examples/compat/test_scripts/d3_deptypes.metta'). +mf('./examples/compat/test_scripts/d4_type_prop.metta'). +mf('./examples/compat/test_scripts/d5_auto_types.metta'). +mf('./examples/compat/test_scripts/e1_kb_write.metta'). +mf('./examples/compat/test_scripts/e2_states.metta'). +mf('./examples/compat/test_scripts/e3_match_states.metta'). +mf('./examples/compat/test_scripts/f1_imports.metta'). +mf('./examples/compat/test_scripts/f1_moduleA.metta'). +mf('./examples/compat/test_scripts/f1_moduleB.metta'). +mf('./examples/compat/test_scripts/f1_moduleC.metta'). +mf('./examples/compat/test_scripts/_e2_states_dia.metta'). +mf('./examples/fibo.metta'). +mf('./examples/fwgc.metta'). +mf('./examples/httpclient.metta'). +mf('./examples/NARS.metta'). +mf('./examples/NARS_listing.metta'). +mf('./examples/RUN_minnars.metta'). +mf('./examples/RUN_tests0.metta'). +mf('./examples/RUN_tests1.metta'). +mf('./examples/RUN_tests2.metta'). +mf('./examples/RUN_tests3.metta'). +mf('./examples/send-more.metta'). +mf('./examples/talk80.metta'). +mf('./examples/VRUN_tests0.metta'). +mf('./examples/VRUN_tests1.metta'). +mf('./examples/VRUN_tests2.metta'). +mf('./examples/VRUN_tests3.metta'). +mf('./metta_vspace/nm_test.metta'). +mf('./metta_vspace/r.metta'). +mf('./metta_vspace/test_nspace.metta'). +:- forall(mf(H),add_history1(load_metta(H))). +%:- load_metta + + + + + +end_of_file. + + + +parsing(String, Expr) :- string(String),!,string_codes(String,Codes),phrase(expressions(Expr), Codes). +parsing(String, Expr) :- phrase(expressions(Expr), String). + +expressions([E|Es]) --> + ws, expression(E), ws, + !, % single solution: longest input match + expressions(Es). +expressions([]) --> []. + +% ws --> ";",until_eol, +ws --> [W], { code_type(W, space) }, ws. +ws --> []. + +% A number N is represented as n(N), a symbol S as s(S). + +expression(s(A)) --> symbol(Cs), { atom_codes(A, Cs) }. +expression(n(N)) --> number(Cs), { number_codes(N, Cs) }. +expression(List) --> [L],{is_bracket_lr(L,R)},expressions(List), [R]. +expression([s(quote),Q]) --> "'", expression(Q). + +number([D|Ds]) --> digit(D), number(Ds). +number([D]) --> digit(D). + +digit(D) --> [D], { code_type(D, digit) }. + +symbol([A|As]) --> + [A], + { is_ok_symbolchar(A) }, + symbolr(As). + +symbolr([A|As]) --> + [A], + { is_ok_symbolchar(A) ; code_type(A, alnum) }, + symbolr(As). +symbolr([]) --> []. + +is_bracket_lr(L,R):- member(LR,["()","{}","[]","\"\""]), nth0(0,LR,L),nth0(1,LR,R). +is_ok_symbolchar(A):- \+ code_type(A, space), \+ code_type(A, white), \+ is_bracket_lr(A,_), \+ is_bracket_lr(_,A). + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Interpretation + -------------- + + Declaratively, execution of a Lisp form is a relation between the + (function and variable) binding environment before its execution + and the environment after its execution. A Lisp program is a + sequence of Lisp forms, and its result is the sequence of their + results. The environment is represented as a pair of association + lists Fs-Vs, associating function names with argument names and + bodies, and variables with values. DCGs are used to implicitly + thread the environment state through. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +codelist_to_forms_i(AsciiCodesList,FormsOut):- + parsing(AsciiCodesList, Forms0), + compile_all(Forms0, FormsOut),!. + +run(Program, Values) :- + parsing(Program, Forms0), + empty_assoc(E), + compile_all(Forms0, Forms), + writeq(seeingFormas(Forms)),nl, + phrase(eval_all(Forms, Values0), [E-E], _), + maplist(unfunc, Values0, Values). + +unfunc(s(S), S). +unfunc(t, t). +unfunc(n(N), N). +unfunc([], []). +unfunc([Q0|Qs0], [Q|Qs]) :- unfunc(Q0, Q), unfunc(Qs0, Qs). + +fold([], _, V, n(V)). +fold([n(F)|Fs], Op, V0, V) :- E =.. [Op,V0,F], V1 is E, fold(Fs, Op, V1, V). + +compile_all(Fs0, Fs) :- maplist(compile, Fs0, Fs). + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + compile/2 marks (with 'user/1') calls of user-defined functions. + This eliminates an otherwise defaulty representation of function + calls and thus allows for first argument indexing in eval//3. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +compile(F0, F) :- + ( F0 = n(_) -> F = F0 + ; F0 = s(t) -> F = t + ; F0 = s(nil) -> F = [] + ; F0 = s(_) -> F = F0 + ; F0 = [] -> F = [] + ; F0 = [s(quote),Arg] -> F = [quote,Arg] + ; F0 = [s(setq),s(Var),Val0] -> compile(Val0, Val), F = [setq,Var,Val] + ; F0 = [s(Op)|Args0], + memberchk(Op, [+,-,*,equal,if,>,<,=,progn,eval,list,car,cons, + cdr,while,not]) -> + compile_all(Args0, Args), + F = [Op|Args] + ; F0 = [s(defun),s(Name),Args0|Body0] -> + compile_all(Body0, Body), + maplist(arg(1), Args0, Args), + F = [defun,Name,Args|Body] + ; F0 = [s(Op)|Args0] -> compile_all(Args0, Args), F = [user(Op)|Args] + ). + +eval_all([], []) --> []. +eval_all([A|As], [B|Bs]) --> eval(A, B), eval_all(As, Bs). + +eval(n(N), n(N)) --> []. +eval(t, t) --> []. +eval([], []) --> []. +eval(s(A), V), [Fs-Vs] --> [Fs-Vs], { get_assoc(A, Vs, V) }. +eval([L|Ls], Value) --> eval(L, Ls, Value). + +eval(quote, [Q], Q) --> []. +eval(+, As0, V) --> eval_all(As0, As), { fold(As, +, 0, V) }. +eval(-, As0, V) --> eval_all(As0, [n(V0)|Vs0]), { fold(Vs0, -, V0, V) }. +eval(*, As0, V) --> eval_all(As0, Vs), { fold(Vs, *, 1, V) }. +eval(car, [A], C) --> eval(A, V), { V == [] -> C = [] ; V = [C|_] }. +eval(cdr, [A], C) --> eval(A, V), { V == [] -> C = [] ; V = [_|C] }. +eval(list, Ls0, Ls) --> eval_all(Ls0, Ls). +eval(not, [A], V) --> eval(A, V0), goal_truth(V0=[], V). +eval(>, [A,B], V) --> eval(A, n(V1)), eval(B, n(V2)), goal_truth(V1>V2, V). +eval(<, [A,B], V) --> eval(>, [B,A], V). +eval(=, [A,B], V) --> eval(A, n(V1)), eval(B, n(V2)), goal_truth(V1=:=V2, V). +eval(progn, Ps, V) --> eval_all(Ps, Vs), { last(Vs, V) }. +eval(eval, [A], V) --> eval(A, F0), { compile(F0, F1) }, eval(F1, V). +eval(equal, [A,B], V) --> eval(A, V1), eval(B, V2), goal_truth(V1=V2, V). +eval(cons, [A,B], [V0|V1]) --> eval(A, V0), eval(B, V1). +eval(while, [Cond|Bs], []) --> + ( eval(Cond, []) -> [] + ; eval_all(Bs, _), + eval(while, [Cond|Bs], _) + ). +eval(defun, [F,As|Body], s(F)), [Fs-Vs0] --> + [Fs0-Vs0], + { put_assoc(F, Fs0, As-Body, Fs) }. +eval(user(F), As0, V), [Fs-Vs] --> + eval_all(As0, As1), + [Fs-Vs], + { empty_assoc(E), + get_assoc(F, Fs, As-Body), + bind_arguments(As, As1, E, Bindings), + phrase(eval_all(Body, Results), [Fs-Bindings], _), + last(Results, V) }. +eval('bind!', [Var,V0], V), [Fs0-Vs] --> + eval(V0, V), + [Fs0-Vs0], + { put_assoc(Var, Vs0, V, Vs) }. +eval(setq, [Var,V0], V), [Fs0-Vs] --> + eval(V0, V), + [Fs0-Vs0], + { put_assoc(Var, Vs0, V, Vs) }. +eval(if, [Cond,Then|Else], Value) --> + ( eval(Cond, []) -> eval_all(Else, Values), { last(Values, Value) } + ; eval(Then, Value) + ). + +:- meta_predicate goal_truth(0,*,//,//). +goal_truth(Goal, T) --> { Goal -> T = t ; T = [] }. + +bind_arguments([], [], Bs, Bs). +bind_arguments([A|As], [V|Vs], Bs0, Bs) :- + put_assoc(A, Bs0, V, Bs1), + bind_arguments(As, Vs, Bs1, Bs). + +run(S):-'format'('~n~s~n',[S]),run(S,V),writeq(V). + +%if_script_file_time(X):-if_startup_script(time(X)). +if_script_file_time(_):-!. +%if_script_file_time(X):- nop(time(X)). + +% Append: + :- if_script_file_time(run(" + (defun append (x y) + (if x + (cons (car x) (append (cdr x) y)) + y)) + + (append '(a b) '(3 4 5))")). + + %@ V = [append, [a, b, 3, 4, 5]]. + + +% Fibonacci, naive version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) + 0 + (if (= 1 n) + 1 + (+ (fib (- n 1)) (fib (- n 2)))))) + (fib 24)")). + + %@ % 14,255,802 inferences, 3.71 CPU in 3.87 seconds (96% CPU, 3842534 Lips) + %@ V = [fib, 46368]. + + +% Fibonacci, accumulating version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) 0 (fib1 0 1 1 n))) + + (defun fib1 (f1 f2 i to) + (if (= i to) + f2 + (fib1 f2 (+ f1 f2) (+ i 1) to))) + + (fib 250)")). + + %@ % 39,882 inferences, 0.010 CPU in 0.013 seconds (80% CPU, 3988200 Lips) + %@ V = [fib, fib1, 7896325826131730509282738943634332893686268675876375]. + + +% Fibonacci, iterative version: + :- if_script_file_time(run(" + (defun fib (n) + (setq f (cons 0 1)) + (setq i 0) + (while (< i n) + (setq f (cons (cdr f) (+ (car f) (cdr f)))) + (setq i (+ i 1))) + (car f)) + + (fib 350)")). + + %@ % 30,794 inferences, 0.002 CPU in 0.002 seconds (100% CPU, 12831368 Lips) + %@ V = [fib, 6254449428820551641549772190170184190608177514674331726439961915653414425]. + + + +% Fibonacci, accumulating version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) 0 (fib1 0 1 1 n))) + + (defun fib1 (f1 f2 i to) + (if (= i to) + f2 + (fib1 f2 (+ f1 f2) (+ i 1) to))) + + (fib 350)")). + + %@ % 44,595 inferences, 0.003 CPU in 0.003 seconds (100% CPU, 14526532 Lips) + %@ V = [fib, fib1, 6254449428820551641549772190170184190608177514674331726439961915653414425]. + + +% Higher-order programming and eval: + :- if_script_file_time(run(" + (defun map (f xs) + (if xs + (cons (eval (list f (car xs))) (map f (cdr xs))) + ())) + + (defun plus1 (x) (+ 1 x)) + + (map 'plus1 '(1 2 3)) + " + )). + + %@ V = [map, plus1, [2, 3, 4]]. + +%:- ensure_loaded(metta_reader). + + + +#[test] +fn test_case_operation() { + let metta = new_metta_rust(); + let result = metta.run(&mut SExprParser::new(" + ")); + + let expected = metta.run(&mut SExprParser::new(" + ! OK + ! 7 + ! (superpose (OK-3 OK-4)) + ! (superpose (3 4 5)) + ! (superpose ()) + ")); + assert_eq!(result, expected); + + let metta = new_metta_rust(); + let result = metta.run(&mut SExprParser::new(" + (Rel-P A B) + (Rel-Q A C) + + ; cases can be used for deconstruction + !(case (match &self ($rel A $x) ($rel $x)) + (((Rel-P $y) (P $y)) + ((Rel-Q $y) (Q $y)))) + + ; %void% can be used to capture empty results + !(case (match &self ($rel B $x) ($rel $x)) + (((Rel-P $y) (P $y)) + ((Rel-Q $y) (Q $y)) + (%void% no-match))) + + ; a functional example + (= (maybe-inc $x) + (case $x + (((Just $v) (Just (+ 1 $v))) + (Nothing Nothing))) + ) + !(maybe-inc Nothing) + !(maybe-inc (Just 2)) + ")); + let expected = metta.run(&mut SExprParser::new(" + ! (superpose ((Q C) (P B))) + ! no-match + ! Nothing + ! (Just 3) + ")); + assert_eq_metta_results!(result, expected); +} + + + +use hyperon::metta::text::*; +use hyperon::metta::runner::new_metta_rust; + +#[test] +fn test_reduce_higher_order() { + let program = " + ; Curried plus + (: plus (-> Number (-> Number Number))) + (= ((plus $x) $y) (+ $x $y)) + ; Define inc as partial evaluation of plus + (: inc (-> (-> Number Number))) + (= (inc) (plus 1)) + + !(assertEqualToResult ((inc) 2) (3)) + "; + let metta = new_metta_rust(); + + let result = metta.run(&mut SExprParser::new(program)); + + assert_eq!(result, Ok(vec![vec![]])); +} + + + +use hyperon::*; +use hyperon::space::grounding::GroundingSpace; + +#[test] +fn test_custom_match_with_space() { + let mut main_space = GroundingSpace::new(); + let mut inserted_space = GroundingSpace::new(); + inserted_space.add(expr!("implies" ("B" x) ("C" x))); + inserted_space.add(expr!("implies" ("A" x) ("B" x))); + inserted_space.add(expr!("A" "Sam")); + main_space.add(Atom::gnd(inserted_space)); + let result = main_space.query(&expr!("," ("implies" ("B" x) z) ("implies" ("A" x) y) ("A" x))); + assert_eq!(result.len(), 1); + assert_eq!(result[0].resolve(&VariableAtom::new("y")), Some(expr!("B" "Sam"))); + assert_eq!(result[0].resolve(&VariableAtom::new("z")), Some(expr!("C" "Sam"))); +} + + + +use hyperon::*; +use hyperon::common::*; +use hyperon::metta::interpreter::*; +use hyperon::space::grounding::GroundingSpace; + +#[test] +fn test_types_in_metta() { + let mut space = GroundingSpace::new(); + space.add(expr!("=" ("check" (":" n "Int")) ({IS_INT} n))); + space.add(expr!("=" ("check" (":" n "Nat")) ({AND} ("check" (":" n "Int")) ({GT} n {0})))); + space.add(expr!("=" ("if" {true} then else) then)); + space.add(expr!("=" ("if" {false} then else) else)); + space.add(expr!(":" "if" ("->" "bool" "Atom" "Atom" "Atom"))); + space.add(expr!("=" ("fac" n) ("if" ("check" (":" n "Nat")) ("if" ({EQ} n {1}) {1} ({MUL} n ("fac" ({SUB} n {1})))) ({ERR})))); + + assert_eq!(interpret(&space, &expr!("check" (":" {3} "Int"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {(-3)} "Int"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {3} "Nat"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {(-3)} "Nat"))), Ok(vec![expr!({false})])); + assert_eq!(interpret(&space, &expr!("if" ("check" (":" {(3)} "Nat")) "ok" "nok")), Ok(vec![expr!("ok")])); + assert_eq!(interpret(&space, &expr!("if" ("check" (":" {(-3)} "Nat")) "ok" "nok")), Ok(vec![expr!("nok")])); + assert_eq!(interpret(&space, &expr!("fac" {1})), Ok(vec![expr!({1})])); + assert_eq!(interpret(&space, &expr!("fac" {3})), Ok(vec![expr!({6})])); +} + + + + + + + + + #[test] + fn test_match_expression_with_variables() { + let mut space = GroundingSpace::new(); + space.add(expr!("+" "A" ("*" "B" "C"))); + assert_eq!(space.query(&expr!("+" a ("*" b c))), + bind_set![{a: expr!("A"), b: expr!("B"), c: expr!("C") }]); + } + + #[test] + fn test_match_different_value_for_variable() { + let mut space = GroundingSpace::new(); + space.add(expr!("+" "A" ("*" "B" "C"))); + assert_eq!(space.query(&expr!("+" a ("*" a c))), BindingsSet::empty()); + } + + #[test] + fn test_match_query_variable_has_priority() { + let mut space = GroundingSpace::new(); + space.add(expr!("equals" x x)); + + let result = space.query(&expr!("equals" y z)); + assert_eq!(result, bind_set![{ y: expr!(z) }]); + } + + #[test] + fn test_match_query_variable_via_data_variable() { + let mut space = GroundingSpace::new(); + space.add(expr!(x x)); + assert_eq!(space.query(&expr!(y (z))), bind_set![{y: expr!((z))}]); + } + + #[test] + fn test_match_if_then_with_x() { + let mut space = GroundingSpace::new(); + space.add(expr!("=" ("if" "True" then) then)); + assert_eq!(space.query(&expr!("=" ("if" "True" "42") X)), + bind_set![{X: expr!("42")}]); + } + + #[test] + fn test_match_combined_query() { + let mut space = GroundingSpace::new(); + space.add(expr!("posesses" "Sam" "baloon")); + space.add(expr!("likes" "Sam" ("blue" "stuff"))); + space.add(expr!("has-color" "baloon" "blue")); + + let result = space.query(&expr!("," ("posesses" "Sam" object) + ("likes" "Sam" (color "stuff")) + ("has-color" object color))); + assert_eq!(result, bind_set![{object: expr!("baloon"), color: expr!("blue")}]); + } + diff --git a/metta_vspace/pyswip-12-15/metta_toplevel.pl b/metta_vspace/pyswip-12-15/metta_toplevel.pl new file mode 100755 index 00000000..82b52d6e --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_toplevel.pl @@ -0,0 +1,2155 @@ +/* Part of SWI-Prolog + + Author: Jan Wielemaker + E-mail: J.Wielemaker@vu.nl + WWW: http://www.swi-prolog.org + Copyright (c) 1985-2021, University of Amsterdam + VU University Amsterdam + SWI-Prolog Solutions b.v. + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in + the documentation and/or other materials provided with the + distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. +*/ +/* +:- module('metta_toplevel', + [ '$initialise'/0, % start Prolog + 'metta_toplevel'/0, % Prolog top-level (re-entrant) + '$compile'/0, % `-c' toplevel + '$config'/0, % --dump-runtime-variables toplevel + initialize/0, % Run program '$initialization' + version/0, % Write initial banner + version/1, % Add message to the banner + prolog/0, % user toplevel predicate + 'metta_query_loop'/0, % toplevel predicate + 'metta_execute_query'/3, % +Query, +Bindings, -Truth + residual_goals/1, % +Callable + ('$initialization')/1, % '$initialization' goal (directive) + '$thread_init'/0, % initialise thread + (thread_initialization)/1 % thread '$initialization' goal + ]). +*/ + + /******************************* + * VERSION BANNER * + *******************************/ + +:- dynamic + prolog:version_msg/1. + +%! version is det. +% +% Print the Prolog banner message and messages registered using +% version/1. + +version :- + print_message(banner, welcome). + +%! version(+Message) is det. +% +% Add message to version/0 +/* +:- multifile + system:term_expansion/2. + +system:term_expansion((:- version(Message)), + prolog:version_msg(Message)). + +version(Message) :- + ( prolog:version_msg(Message) + -> true + ; assertz(prolog:version_msg(Message)) + ). +*/ + + /******************************** + * INITIALISATION * + *********************************/ + +%! load_init_file is det. +% +% Load the user customization file. This can be done using ``swipl -f +% file`` or simply using ``swipl``. In the first case we search the +% file both directly and over the alias `user_app_config`. In the +% latter case we only use the alias. + +load_init_file :- + '$cmd_option_val'(init_file, OsFile), + !, + prolog_to_os_filename(File, OsFile), + load_init_file(File, explicit). +load_init_file :- + load_init_file('init.pl', implicit). + +%! loaded_init_file(?Base, ?AbsFile) +% +% Used by prolog_load_context/2 to confirm we are loading a script. + +:- dynamic + loaded_init_file/2. % already loaded init files + +load_init_file(none, _) :- !. +load_init_file(Base, _) :- + loaded_init_file(Base, _), + !. +load_init_file(InitFile, explicit) :- + exists_file(InitFile), + !, + ensure_loaded(user:InitFile). +load_init_file(Base, _) :- + absolute_file_name(user_app_config(Base), InitFile, + [ access(read), + file_errors(fail) + ]), + asserta(loaded_init_file(Base, InitFile)), + load_files(user:InitFile, + [ scope_settings(false) + ]). +load_init_file('init.pl', implicit) :- + ( current_prolog_flag(windows, true), + absolute_file_name(user_profile('swipl.ini'), InitFile, + [ access(read), + file_errors(fail) + ]) + ; expand_file_name('~/.swiplrc', [InitFile]), + exists_file(InitFile) + ), + !, + print_message(warning, backcomp(init_file_moved(InitFile))). +load_init_file(_, _). + +'$load_system_init_file' :- + loaded_init_file(system, _), + !. +'$load_system_init_file' :- + '$cmd_option_val'(system_init_file, Base), + Base \== none, + current_prolog_flag(home, Home), + file_name_extension(Base, rc, Name), + atomic_list_concat([Home, '/', Name], File), + absolute_file_name(File, Path, + [ file_type(prolog), + access(read), + file_errors(fail) + ]), + asserta(loaded_init_file(system, Path)), + load_files(user:Path, + [ silent(true), + scope_settings(false) + ]), + !. +'$load_system_init_file'. + +'$load_script_file' :- + loaded_init_file(script, _), + !. +'$load_script_file' :- + '$cmd_option_val'(script_file, OsFiles), + load_script_files(OsFiles). + +load_script_files([]). +load_script_files([OsFile|More]) :- + prolog_to_os_filename(File, OsFile), + ( absolute_file_name(File, Path, + [ file_type(prolog), + access(read), + file_errors(fail) + ]) + -> asserta(loaded_init_file(script, Path)), + load_files(user:Path, []), + load_files(More) + ; throw(error(existence_error(script_file, File), _)) + ). + + + /******************************* + * AT_INITIALISATION * + *******************************/ + +:- meta_predicate + '$initialization'(0). + +:- '$iso'(('$initialization')/1). + +%! '$initialization'(:Goal) +% +% Runs Goal after loading the file in which this directive +% appears as well as after restoring a saved state. +% +% @see '$initialization'/2 +/* +'$initialization'(Goal) :- + Goal = _:G, + prolog:initialize_now(G, Use), + !, + print_message(warning, initialize_now(G, Use)), + initialization(Goal, now). +'$initialization'(Goal) :- + initialization(Goal, after_load). + +:- multifile + prolog:initialize_now/2, + prolog:message//1. + +prolog:initialize_now(load_foreign_library(_), + 'use :- use_foreign_library/1 instead'). +prolog:initialize_now(load_foreign_library(_,_), + 'use :- use_foreign_library/2 instead'). + +prolog:message(initialize_now(Goal, Use)) --> + [ 'Initialization goal ~p will be executed'-[Goal],nl, + 'immediately for backward compatibility reasons', nl, + '~w'-[Use] + ]. + +'$run_initialization' :- + '$run_initialization'(_, []), + '$thread_init'. + +%! initialize +% +% Run goals registered with `:- '$initialization'(Goal, program).`. Stop +% with an exception if a goal fails or raises an exception. + +initialize :- + forall('$init_goal'(when(program), Goal, Ctx), + run_initialize(Goal, Ctx)). + +run_initialize(Goal, Ctx) :- + ( catch(Goal, E, true), + ( var(E) + -> true + ; throw(error(initialization_error(E, Goal, Ctx), _)) + ) + ; throw(error(initialization_error(failed, Goal, Ctx), _)) + ). + +*/ + /******************************* + * THREAD INITIALIZATION * + *******************************/ +/* +:- meta_predicate + thread_initialization(0). +:- dynamic + '$at_thread_initialization'/1. + +%! thread_initialization(:Goal) +% +% Run Goal now and everytime a new thread is created. + +thread_initialization(Goal) :- + assert('$at_thread_initialization'(Goal)), + call(Goal), + !. + +'$thread_init' :- + ( '$at_thread_initialization'(Goal), + ( call(Goal) + -> fail + ; fail + ) + ; true + ). +*/ + + /******************************* + * FILE SEARCH PATH (-p) * + *******************************/ +/* +%! '$set_file_search_paths' is det. +% +% Process -p PathSpec options. + +'$set_file_search_paths' :- + '$cmd_option_val'(search_paths, Paths), + ( '$member'(Path, Paths), + atom_chars(Path, Chars), + ( phrase('$search_path'(Name, Aliases), Chars) + -> '$reverse'(Aliases, Aliases1), + forall('$member'(Alias, Aliases1), + asserta(user:file_search_path(Name, Alias))) + ; print_message(error, commandline_arg_type(p, Path)) + ), + fail ; true + ). + +'$search_path'(Name, Aliases) --> + '$string'(NameChars), + [=], + !, + {atom_chars(Name, NameChars)}, + '$search_aliases'(Aliases). + +'$search_aliases'([Alias|More]) --> + '$string'(AliasChars), + path_sep, + !, + { '$make_alias'(AliasChars, Alias) }, + '$search_aliases'(More). +'$search_aliases'([Alias]) --> + '$string'(AliasChars), + '$eos', + !, + { '$make_alias'(AliasChars, Alias) }. + +path_sep --> + { current_prolog_flag(windows, true) + }, + !, + [;]. +path_sep --> + [:]. + +'$string'([]) --> []. +'$string'([H|T]) --> [H], '$string'(T). + +'$eos'([], []). + +'$make_alias'(Chars, Alias) :- + catch(term_to_atom(Alias, Chars), _, fail), + ( atom(Alias) + ; functor(Alias, F, 1), + F \== / + ), + !. +'$make_alias'(Chars, Alias) :- + atom_chars(Alias, Chars). + +*/ + /******************************* + * LOADING ASSIOCIATED FILES * + *******************************/ + +%! argv_files(-Files) is det. +% +% Update the Prolog flag `argv`, extracting the leading script files. +/* +argv_files(Files) :- + current_prolog_flag(argv, Argv), + no_option_files(Argv, Argv1, Files, ScriptArgs), + ( ( ScriptArgs == true + ; Argv1 == [] + ) + -> ( Argv1 \== Argv + -> set_prolog_flag(argv, Argv1) + ; true + ) + ; '$usage', + halt(1) + ). + +no_option_files([--|Argv], Argv, [], true) :- !. +no_option_files([Opt|_], _, _, ScriptArgs) :- + ScriptArgs \== true, + sub_atom(Opt, 0, _, _, '-'), + !, + '$usage', + halt(1). +no_option_files([OsFile|Argv0], Argv, [File|T], ScriptArgs) :- + file_name_extension(_, Ext, OsFile), + user:prolog_file_type(Ext, prolog), + !, + ScriptArgs = true, + prolog_to_os_filename(File, OsFile), + no_option_files(Argv0, Argv, T, ScriptArgs). +no_option_files([OsScript|Argv], Argv, [Script], ScriptArgs) :- + ScriptArgs \== true, + !, + prolog_to_os_filename(Script, OsScript), + ( exists_file(Script) + -> true + ; '$existence_error'(file, Script) + ), + ScriptArgs = true. +no_option_files(Argv, Argv, [], _). + +clean_argv :- + ( current_prolog_flag(argv, [--|Argv]) + -> set_prolog_flag(argv, Argv) + ; true + ). + +%! associated_files(-Files) +% +% If SWI-Prolog is started as ., where is +% the extension registered for associated files, set the Prolog +% flag associated_file, switch to the directory holding the file +% and -if possible- adjust the window title. + +associated_files([]) :- + current_prolog_flag(saved_program_class, runtime), + !, + clean_argv. +associated_files(Files) :- + '$set_prolog_file_extension', + argv_files(Files), + ( Files = [File|_] + -> absolute_file_name(File, AbsFile), + set_prolog_flag(associated_file, AbsFile), + set_working_directory(File), + set_window_title(Files) + ; true + ). + +%! set_working_directory(+File) +% +% When opening as a GUI application, e.g., by opening a file from +% the Finder/Explorer/..., we typically want to change working +% directory to the location of the primary file. We currently +% detect that we are a GUI app by the Prolog flag =console_menu=, +% which is set by swipl-win[.exe]. + +set_working_directory(File) :- + current_prolog_flag(console_menu, true), + access_file(File, read), + !, + file_directory_name(File, Dir), + working_directory(_, Dir). +set_working_directory(_). + +set_window_title([File|More]) :- + current_predicate(system:window_title/2), + !, + ( More == [] + -> Extra = [] + ; Extra = ['...'] + ), + atomic_list_concat(['SWI-Prolog --', File | Extra], ' ', Title), + system:window_title(_, Title). +set_window_title(_). + + +%! start_pldoc +% +% If the option =|--pldoc[=port]|= is given, load the PlDoc +% system. + +start_pldoc :- + '$cmd_option_val'(pldoc_server, Server), + ( Server == '' + -> call((doc_server(_), doc_browser)) + ; catch(atom_number(Server, Port), _, fail) + -> call(doc_server(Port)) + ; print_message(error, option_usage(pldoc)), + halt(1) + ). +start_pldoc. + + +%! load_associated_files(+Files) +% +% Load Prolog files specified from the commandline. + +load_associated_files(Files) :- + ( '$member'(File, Files), + load_files(user:File, [expand(false)]), + fail + ; true + ). + +hkey('HKEY_CURRENT_USER/Software/SWI/Prolog'). +hkey('HKEY_LOCAL_MACHINE/Software/SWI/Prolog'). + +'$set_prolog_file_extension' :- + current_prolog_flag(windows, true), + hkey(Key), + catch(win_registry_get_value(Key, fileExtension, Ext0), + _, fail), + !, + ( atom_concat('.', Ext, Ext0) + -> true + ; Ext = Ext0 + ), + ( user:prolog_file_type(Ext, prolog) + -> true + ; asserta(user:prolog_file_type(Ext, prolog)) + ). +'$set_prolog_file_extension'. + +*/ + /******************************** + * TOPLEVEL GOALS * + *********************************/ +/* +%! '$initialise' is semidet. +% +% Called from PL_initialise() to do the Prolog part of the +% '$initialization'. If an exception occurs, this is printed and +% '$initialise' fails. + +'$initialise' :- + catch(initialise_prolog, E, initialise_error(E)). + +initialise_error('$aborted') :- !. +initialise_error(E) :- + print_message(error, initialization_exception(E)), + fail. +*/ +initialise_prolog :- + '$clean_history', + apple_setup_app, + '$run_initialization', + '$load_system_init_file', + set_toplevel, + '$set_file_search_paths', + init_debug_flags, + start_pldoc, + opt_attach_packs, + load_init_file, + catch(setup_colors, E, print_message(warning, E)), + associated_files(Files), + '$load_script_file', + load_associated_files(Files), + '$cmd_option_val'(goals, Goals), + ( Goals == [], + \+ '$init_goal'(when(_), _, _) + -> version % default interactive run + ; run_init_goals(Goals), + ( load_only + -> version + ; run_program_init, + run_main_init + ) + ). + +:- if(current_prolog_flag(apple,true)). +apple_set_working_directory :- + ( expand_file_name('~', [Dir]), + exists_directory(Dir) + -> working_directory(_, Dir) + ; true + ). + +apple_set_locale :- + ( getenv('LC_CTYPE', 'UTF-8'), + apple_current_locale_identifier(LocaleID), + atom_concat(LocaleID, '.UTF-8', Locale), + catch(setlocale(ctype, _Old, Locale), _, fail) + -> setenv('LANG', Locale), + unsetenv('LC_CTYPE') + ; true + ). + +apple_setup_app :- + current_prolog_flag(apple, true), + current_prolog_flag(console_menu, true), % SWI-Prolog.app on MacOS + apple_set_working_directory, + apple_set_locale. +:- endif. +apple_setup_app. + +opt_attach_packs :- + current_prolog_flag(packs, true), + !, + attach_packs. +opt_attach_packs. + +set_toplevel :- + '$cmd_option_val'(toplevel, TopLevelAtom), + catch(term_to_atom(TopLevel, TopLevelAtom), E, + (print_message(error, E), + halt(1))), + create_prolog_flag(toplevel_goal, TopLevel, [type(term)]). + +load_only :- + current_prolog_flag(os_argv, OSArgv), + memberchk('-l', OSArgv), + current_prolog_flag(argv, Argv), + \+ memberchk('-l', Argv). + +%! run_init_goals(+Goals) is det. +% +% Run registered '$initialization' goals on order. If a goal fails, +% execution is halted. + +run_init_goals([]). +run_init_goals([H|T]) :- + run_init_goal(H), + run_init_goals(T). + +run_init_goal(Text) :- + catch(term_to_atom(Goal, Text), E, + ( print_message(error, init_goal_syntax(E, Text)), + halt(2) + )), + run_init_goal(Goal, Text). + +%! run_program_init is det. +% +% Run goals registered using + +run_program_init :- + forall('$init_goal'(when(program), Goal, Ctx), + run_init_goal(Goal, @(Goal,Ctx))). + +run_main_init :- + findall(Goal-Ctx, '$init_goal'(when(main), Goal, Ctx), Pairs), + '$last'(Pairs, Goal-Ctx), + !, + ( current_prolog_flag(toplevel_goal, default) + -> set_prolog_flag(toplevel_goal, halt) + ; true + ), + run_init_goal(Goal, @(Goal,Ctx)). +run_main_init. + +run_init_goal(Goal, Ctx) :- + ( catch_with_backtrace(user:Goal, E, true) + -> ( var(E) + -> true + ; print_message(error, init_goal_failed(E, Ctx)), + halt(2) + ) + ; ( current_prolog_flag(verbose, silent) + -> Level = silent + ; Level = error + ), + print_message(Level, init_goal_failed(failed, Ctx)), + halt(1) + ). + +%! init_debug_flags is det. +% +% Initialize the various Prolog flags that control the debugger and +% toplevel. + +init_debug_flags :- + once(print_predicate(_, [print], PrintOptions)), + Keep = [keep(true)], + create_prolog_flag(answer_write_options, PrintOptions, Keep), + create_prolog_flag(prompt_alternatives_on, determinism, Keep), + create_prolog_flag(toplevel_extra_white_line, true, Keep), + create_prolog_flag(toplevel_print_factorized, false, Keep), + create_prolog_flag(print_write_options, + [ portray(true), quoted(true), numbervars(true) ], + Keep), + create_prolog_flag(toplevel_residue_vars, false, Keep), + create_prolog_flag(toplevel_list_wfs_residual_program, true, Keep), + '$set_debugger_write_options'(print). + +%! setup_backtrace +% +% Initialise printing a backtrace. + +setup_backtrace :- + ( \+ current_prolog_flag(backtrace, false), + load_setup_file(library(prolog_stack)) + -> true + ; true + ). + +%! setup_colors is det. +% +% Setup interactive usage by enabling colored output. + +setup_colors :- + ( \+ current_prolog_flag(color_term, false), + stream_property(user_input, tty(true)), + stream_property(user_error, tty(true)), + stream_property(user_output, tty(true)), + \+ getenv('TERM', dumb), + load_setup_file(user:library(ansi_term)) + -> true + ; true + ). + +%! setup_history +% +% Enable per-directory persistent history. + +setup_history :- + ( \+ current_prolog_flag(save_history, false), + stream_property(user_input, tty(true)), + \+ current_prolog_flag(readline, false), + load_setup_file(library(prolog_history)) + -> prolog_history(enable) + ; true + ), + set_default_history, + '$load_history'. + +%! setup_readline +% +% Setup line editing. + +setup_readline :- + ( current_prolog_flag(readline, swipl_win) + -> true + ; stream_property(user_input, tty(true)), + current_prolog_flag(tty_control, true), + \+ getenv('TERM', dumb), + ( current_prolog_flag(readline, ReadLine) + -> true + ; ReadLine = true + ), + readline_library(ReadLine, Library), + load_setup_file(library(Library)) + -> set_prolog_flag(readline, Library) + ; set_prolog_flag(readline, false) + ). + +readline_library(true, Library) :- + !, + preferred_readline(Library). +readline_library(false, _) :- + !, + fail. +readline_library(Library, Library). + +preferred_readline(editline). +preferred_readline(readline). + +%! load_setup_file(+File) is semidet. +% +% Load a file and fail silently if the file does not exist. + +load_setup_file(File) :- + catch(load_files(File, + [ silent(true), + if(not_loaded) + ]), _, fail). + + +:- '$hide'('metta_toplevel'/0). % avoid in the GUI stacktrace + +%! 'metta_toplevel' +% +% Called from PL_toplevel() + +'metta_toplevel' :- + '$runtoplevel', + print_message(informational, halt). + +%! '$runtoplevel' +% +% Actually run the toplevel. The values `default` and `prolog` both +% start the interactive toplevel, where `prolog` implies the user gave +% =|-t prolog|=. +% +% @see prolog/0 is the default interactive toplevel + +'$runtoplevel' :- + current_prolog_flag(toplevel_goal, TopLevel0), + toplevel_goal(TopLevel0, TopLevel), + user:TopLevel. + +:- dynamic setup_done/0. +:- volatile setup_done/0. + +toplevel_goal(default, 'metta_query_loop') :- + !, + setup_interactive. +toplevel_goal(prolog, 'metta_query_loop') :- + !, + setup_interactive. +toplevel_goal(Goal, Goal). + +setup_interactive :- + setup_done, + !. +setup_interactive :- + asserta(setup_done), + catch(setup_backtrace, E, print_message(warning, E)), + catch(setup_readline, E, print_message(warning, E)), + catch(setup_history, E, print_message(warning, E)). + +%! '$compile' +% +% Toplevel called when invoked with -c option. + +'$compile' :- + ( catch('$compile_', E, (print_message(error, E), halt(1))) + -> true + ; print_message(error, error(goal_failed('$compile'), _)), + halt(1) + ), + halt. % set exit code + +'$compile_' :- + '$load_system_init_file', + catch(setup_colors, _, true), + '$set_file_search_paths', + init_debug_flags, + '$run_initialization', + opt_attach_packs, + use_module(library(qsave)), + qsave:qsave_toplevel. + +%! '$config' +% +% Toplevel when invoked with --dump-runtime-variables +/* +'$config' :- + '$load_system_init_file', + '$set_file_search_paths', + init_debug_flags, + '$run_initialization', + load_files(library(prolog_config)), + ( catch(prolog_dump_runtime_variables, E, + (print_message(error, E), halt(1))) + -> true + ; print_message(error, error(goal_failed(prolog_dump_runtime_variables),_)) + ). + +*/ + /******************************** + * USER INTERACTIVE LOOP * + *********************************/ + +%! prolog +% +% Run the Prolog toplevel. This is now the same as break/0, which +% pretends to be in a break-level if there is a parent +% environment. + +%prolog :- break. + +:- create_prolog_flag(toplevel_mode, backtracking, []). + +%! 'metta_query_loop' +% +% Run the normal Prolog query loop. Note that the query is not +% protected by catch/3. Dealing with unhandled exceptions is done +% by the C-function query_loop(). This ensures that unhandled +% exceptions are really unhandled (in Prolog). + +'metta_query_loop' :- + current_prolog_flag(toplevel_mode, recursive), + !, + break_level(Level), + read_expanded_query(Level, Query, Bindings), + ( Query == end_of_file + -> print_message(query, query(eof)) + ; '$call_no_catch'('metta_execute_query'(Query, Bindings, _)), + ( current_prolog_flag(toplevel_mode, recursive) + -> 'metta_query_loop' + ; '$switch_toplevel_mode'(backtracking), + 'metta_query_loop' % Maybe throw('$switch_toplevel_mode')? + ) + ). +'metta_query_loop' :- + break_level(BreakLev), + repeat, + read_expanded_query(BreakLev, Query, Bindings), + ( Query == end_of_file + -> !, print_message(query, query(eof)) + ; 'metta_execute_query'(Query, Bindings, _), + ( current_prolog_flag(toplevel_mode, recursive) + -> !, + '$switch_toplevel_mode'(recursive), + 'metta_query_loop' + ; fail + ) + ). + +break_level(BreakLev) :- + ( current_prolog_flag(break_level, BreakLev) + -> true + ; BreakLev = -1 + ). + +read_expanded_query(BreakLev, ExpandedQuery, ExpandedBindings) :- + '$current_typein_module'(TypeIn), + ( stream_property(user_input, tty(true)) + -> '$system_prompt'(TypeIn, BreakLev, Prompt), + prompt(Old, '| ') + ; Prompt = '', + prompt(Old, '') + ), + trim_stacks, + trim_heap, + repeat, + read_query(Prompt, Query, Bindings), + prompt(_, Old), + catch(call_expand_query(Query, ExpandedQuery, + Bindings, ExpandedBindings), + Error, + (print_message(error, Error), fail)), + !. + +%! read_s_term_with_history(-Term, +Options) +% +% Read a term guide by Options and maintain a history similar to most +% Unix shells. +% +% When read_history reads a term of the form $silent(Goal), it will +% call Goal and pretend it has not seen anything. This hook is used by +% the GNU-Emacs interface to for communication between GNU-EMACS and +% SWI-Prolog. + +read_s_term_with_history(Term, Options) :- + '$option'(prompt(Prompt), Options, '~! metta>'), + '$option'(input(Input), Options, user_input), + repeat, + prompt_history(Prompt), + read_query_line(Input, Raw), + read_history_(Raw, Term, Options), + !. + + +%! read_query(+Prompt, -Goal, -Bindings) is det. +% +% Read the next query. The first clause deals with the case where +% !-based history is enabled. The second is used if we have command +% line editing. + + +:- if(current_prolog_flag(emscripten, true)). +read_query(_Prompt, Goal, Bindings) :- + '$can_yield', + !, + await(goal, GoalString), + term_string(Goal, GoalString, [variable_names(Bindings)]). +:- endif. +read_query(Prompt, Goal, Bindings) :- + current_prolog_flag(history, N), + integer(N), N > 0, + !, + read_s_term_with_history( + Goal, + [ show(h), + help('!h'), + no_save([trace, end_of_file]), + prompt(Prompt), + variable_names(Bindings) + ]). +read_query(Prompt, Goal, Bindings) :- + remove_history_prompt(Prompt, Prompt1), + repeat, % over syntax errors + prompt1(Prompt1), + read_query_line(user_input, Line), + '$save_history_line'(Line), % save raw line (edit syntax errors) + '$current_typein_module'(TypeIn), + catch(read_s_term_as_atom(Line, Goal, + [ variable_names(Bindings), + module(TypeIn) + ]), E, + ( print_message(error, E), + fail + )), + !, + '$save_history_event'(Line). % save event (no syntax errors) + +%! read_query_line(+Input, -Line) is det. + +read_query_line(Input, Line) :- + stream_property(Input, error(true)), + !, + Line = end_of_file. +read_query_line(Input, Line) :- + catch(read_s_term_as_atom(Input, Line), Error, true), + save_debug_after_read, + ( var(Error) + -> true + ; catch(print_message(error, Error), _, true), + ( Error = error(syntax_error(_),_) + -> fail + ; throw(Error) + ) + ). + +%! read_s_term_as_atom(+Input, -Line) +% +% Read the next term as an atom and skip to the newline or a +% non-space character. + +read_s_term_as_atom(In, Line) :- + read_metta(In,Line), + ( Line == end_of_file + -> true + ; skip_to_nl(In) + ). +/* +read_s_term_as_atom(In, Line) :- + '$raw_read'(In, Line), + ( Line == end_of_file + -> true + ; skip_to_nl(In) + ). +*/ + +%! skip_to_nl(+Input) is det. +% +% Read input after the term. Skips white space and %... comment +% until the end of the line or a non-blank character. + +skip_to_nl(In) :- + repeat, + peek_char(In, C), + ( C == '%' + -> skip(In, '\n') + ; char_type(C, space) + -> get_char(In, _), + C == '\n' + ; true + ), + !. + +remove_history_prompt('', '') :- !. +remove_history_prompt(Prompt0, Prompt) :- + atom_chars(Prompt0, Chars0), + clean_history_prompt_chars(Chars0, Chars1), + delete_leading_blanks(Chars1, Chars), + atom_chars(Prompt, Chars). + +clean_history_prompt_chars([], []). +clean_history_prompt_chars(['~', !|T], T) :- !. +clean_history_prompt_chars([H|T0], [H|T]) :- + clean_history_prompt_chars(T0, T). + +delete_leading_blanks([' '|T0], T) :- + !, + delete_leading_blanks(T0, T). +delete_leading_blanks(L, L). + + +%! set_default_history +% +% Enable !-based numbered command history. This is enabled by default +% if we are not running under GNU-emacs and we do not have our own +% line editing. + +set_default_history :- + current_prolog_flag(history, _), + !. +set_default_history :- + ( ( \+ current_prolog_flag(readline, false) + ; current_prolog_flag(emacs_inferior_process, true) + ) + -> create_prolog_flag(history, 0, []) + ; create_prolog_flag(history, 25, []) + ). + + + /******************************* + * TOPLEVEL DEBUG * + *******************************/ + +%! save_debug_after_read +% +% Called right after the toplevel read to save the debug status if +% it was modified from the GUI thread using e.g. +% +% == +% thread_signal(main, gdebug) +% == +% +% @bug Ideally, the prompt would change if debug mode is enabled. +% That is hard to realise with all the different console +% interfaces supported by SWI-Prolog. + +save_debug_after_read :- + current_prolog_flag(debug, true), + !, + save_debug. +save_debug_after_read. + +save_debug :- + ( tracing, + notrace + -> Tracing = true + ; Tracing = false + ), + current_prolog_flag(debug, Debugging), + set_prolog_flag(debug, false), + create_prolog_flag(query_debug_settings, + debug(Debugging, Tracing), []). + +restore_debug :- + current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), + set_prolog_flag(debug, Debugging), + ( Tracing == true + -> trace + ; true + ). + +%:- '$initialization'(create_prolog_flag(query_debug_settings, debug(false, false), [])). + + + /******************************** + * PROMPTING * + ********************************/ + +'$system_prompt'(Module, BrekLev, Prompt) :- + current_prolog_flag(toplevel_prompt, PAtom), + atom_codes(PAtom, P0), + ( Module \== user + -> '$substitute'('~m', [Module, ': '], P0, P1) + ; '$substitute'('~m', [], P0, P1) + ), + ( BrekLev > 0 + -> '$substitute'('~l', ['[', BrekLev, '] '], P1, P2) + ; '$substitute'('~l', [], P1, P2) + ), + current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), + ( Tracing == true + -> '$substitute'('~d', ['[trace] '], P2, P3) + ; Debugging == true + -> '$substitute'('~d', ['[debug] '], P2, P3) + ; '$substitute'('~d', [], P2, P3) + ), + atom_chars(Prompt, P3). + +'$substitute'(From, T, Old, New) :- + atom_codes(From, FromCodes), + phrase(subst_chars(T), T0), + '$append'(Pre, S0, Old), + '$append'(FromCodes, Post, S0) -> + '$append'(Pre, T0, S1), + '$append'(S1, Post, New), + !. +'$substitute'(_, _, Old, Old). + +subst_chars([]) --> + []. +subst_chars([H|T]) --> + { atomic(H), + !, + atom_codes(H, Codes) + }, + Codes, + subst_chars(T). +subst_chars([H|T]) --> + H, + subst_chars(T). + + + /******************************** + * EXECUTION * + ********************************/ + +%! 'metta_execute_query'(Goal, Bindings, -Truth) is det. +% +% Execute Goal using Bindings. + +'metta_execute_query'(Var, _, true) :- + var(Var), + !, + print_message(informational, var_query(Var)). +'metta_execute_query'(Goal, Bindings, Truth) :- + '$current_typein_module'(TypeIn), + '$dwim_correct_goal'(TypeIn:Goal, Bindings, Corrected), + !, + setup_call_cleanup( + '$set_source_module'(M0, TypeIn), + expand_goal(Corrected, Expanded), + '$set_source_module'(M0)), + print_message(silent, toplevel_goal(Expanded, Bindings)), + '$execute_goal2'(Expanded, Bindings, Truth). +'metta_execute_query'(_, _, false) :- + notrace, + print_message(query, query(no)). + +'$execute_goal2'(Goal, Bindings, true) :- + restore_debug, + '$current_typein_module'(TypeIn), + residue_vars(TypeIn:Goal, Vars, TypeIn:Delays, Chp), + deterministic(Det), + ( save_debug + ; restore_debug, fail + ), + flush_output(user_output), + ( Det == true + -> DetOrChp = true + ; DetOrChp = Chp + ), + call_expand_answer(Bindings, NewBindings), + ( \+ \+ write_bindings(NewBindings, Vars, Delays, DetOrChp) + -> ! + ). +'$execute_goal2'(_, _, false) :- + save_debug, + print_message(query, query(no)). + +residue_vars(Goal, Vars, Delays, Chp) :- + current_prolog_flag(toplevel_residue_vars, true), + !, + '$wfs_call'(call_residue_vars(stop_backtrace(Goal, Chp), Vars), Delays). +residue_vars(Goal, [], Delays, Chp) :- + '$wfs_call'(stop_backtrace(Goal, Chp), Delays). + +stop_backtrace(Goal, Chp) :- + toplevel_call(Goal), + prolog_current_choice(Chp). + +toplevel_call(Goal) :- + call(Goal), + no_lco. + +no_lco. + +%! write_bindings(+Bindings, +ResidueVars, +Delays, +DetOrChp) +%! is semidet. +% +% Write bindings resulting from a query. The flag +% prompt_alternatives_on determines whether the user is prompted +% for alternatives. =groundness= gives the classical behaviour, +% =determinism= is considered more adequate and informative. +% +% Succeeds if the user accepts the answer and fails otherwise. +% +% @arg ResidueVars are the residual constraints and provided if +% the prolog flag `toplevel_residue_vars` is set to +% `project`. + +write_bindings(Bindings, ResidueVars, Delays, DetOrChp) :- + '$current_typein_module'(TypeIn), + translate_bindings(Bindings, Bindings1, ResidueVars, TypeIn:Residuals), + omit_qualifier(Delays, TypeIn, Delays1), + name_vars(Bindings1, Residuals, Delays1), + write_bindings2(Bindings1, Residuals, Delays1, DetOrChp). + +write_bindings2([], Residuals, Delays, _) :- + current_prolog_flag(prompt_alternatives_on, groundness), + !, + print_message(query, query(yes(Delays, Residuals))). +write_bindings2(Bindings, Residuals, Delays, true) :- + current_prolog_flag(prompt_alternatives_on, determinism), + !, + print_message(query, query(yes(Bindings, Delays, Residuals))). +write_bindings2(Bindings, Residuals, Delays, Chp) :- + repeat, + print_message(query, query(more(Bindings, Delays, Residuals))), + get_respons(Action, Chp), + ( Action == redo + -> !, fail + ; Action == show_again + -> fail + ; !, + print_message(query, query(done)) + ). + +name_vars(Bindings, Residuals, Delays) :- + current_prolog_flag(toplevel_name_variables, true), + !, + '$term_multitons'(t(Bindings,Residuals,Delays), Vars), + name_vars_(Vars, Bindings, 0), + term_variables(t(Bindings,Residuals,Delays), SVars), + anon_vars(SVars). +name_vars(_Bindings, _Residuals, _Delays). + +name_vars_([], _, _). +name_vars_([H|T], Bindings, N) :- + name_var(Bindings, Name, N, N1), + H = '$VAR'(Name), + name_vars_(T, Bindings, N1). + +anon_vars([]). +anon_vars(['$VAR'('_')|T]) :- + anon_vars(T). + +name_var(Bindings, Name, N0, N) :- + between(N0, infinite, N1), + I is N1//26, + J is 0'A + N1 mod 26, %' + ( I == 0 + -> format(atom(Name), '_~c', [J]) + ; format(atom(Name), '_~c~d', [J, I]) + ), + ( current_prolog_flag(toplevel_print_anon, false) + -> true + ; \+ is_bound(Bindings, Name) + ), + !, + N is N1+1. + +is_bound([Vars=_|T], Name) :- + ( in_vars(Vars, Name) + -> true + ; is_bound(T, Name) + ). + +in_vars(Name, Name) :- !. +in_vars(Names, Name) :- + '$member'(Name, Names). + +%! residual_goals(:NonTerminal) +% +% Directive that registers NonTerminal as a collector for residual +% goals. +/* +:- multifile + residual_goal_collector/1. + +:- meta_predicate + residual_goals(2). + +residual_goals(NonTerminal) :- + throw(error(context_error(nodirective, residual_goals(NonTerminal)), _)). + +system:term_expansion((:- residual_goals(NonTerminal)), + 'metta_toplevel':residual_goal_collector(M2:Head)) :- + \+ current_prolog_flag(xref, true), + prolog_load_context(module, M), + strip_module(M:NonTerminal, M2, Head), + '$must_be'(callable, Head). + +%! prolog:residual_goals// is det. +% +% DCG that collects residual goals that are not associated with +% the answer through attributed variables. + +:- public prolog:residual_goals//0. + +prolog:residual_goals --> + { findall(NT, residual_goal_collector(NT), NTL) }, + collect_residual_goals(NTL). + +collect_residual_goals([]) --> []. +collect_residual_goals([H|T]) --> + ( call(H) -> [] ; [] ), + collect_residual_goals(T). +*/ + + +%! prolog:translate_bindings(+Bindings0, -Bindings, +ResidueVars, +%! +ResidualGoals, -Residuals) is det. +% +% Translate the raw variable bindings resulting from successfully +% completing a query into a binding list and list of residual +% goals suitable for human consumption. +% +% @arg Bindings is a list of binding(Vars,Value,Substitutions), +% where Vars is a list of variable names. E.g. +% binding(['A','B'],42,[])` means that both the variable +% A and B have the value 42. Values may contain terms +% '$VAR'(Name) to indicate sharing with a given variable. +% Value is always an acyclic term. If cycles appear in the +% answer, Substitutions contains a list of substitutions +% that restore the original term. +% +% @arg Residuals is a pair of two lists representing residual +% goals. The first element of the pair are residuals +% related to the query variables and the second are +% related that are disconnected from the query. +/* +:- public + prolog:translate_bindings/5. +:- meta_predicate + prolog:translate_bindings(+, -, +, +, :). + +prolog:translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals) :- + translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals). +*/ +translate_bindings(Bindings0, Bindings, ResidueVars, Residuals) :- + prolog:residual_goals(ResidueGoals, []), + translate_bindings(Bindings0, Bindings, ResidueVars, ResidueGoals, + Residuals). + +translate_bindings(Bindings0, Bindings, [], [], _:[]-[]) :- + term_attvars(Bindings0, []), + !, + join_same_bindings(Bindings0, Bindings1), + factorize_bindings(Bindings1, Bindings2), + bind_vars(Bindings2, Bindings3), + filter_bindings(Bindings3, Bindings). +translate_bindings(Bindings0, Bindings, ResidueVars, ResGoals0, + TypeIn:Residuals-HiddenResiduals) :- + project_constraints(Bindings0, ResidueVars), + hidden_residuals(ResidueVars, Bindings0, HiddenResiduals0), + omit_qualifiers(HiddenResiduals0, TypeIn, HiddenResiduals), + copy_term(Bindings0+ResGoals0, Bindings1+ResGoals1, Residuals0), + '$append'(ResGoals1, Residuals0, Residuals1), + omit_qualifiers(Residuals1, TypeIn, Residuals), + join_same_bindings(Bindings1, Bindings2), + factorize_bindings(Bindings2, Bindings3), + bind_vars(Bindings3, Bindings4), + filter_bindings(Bindings4, Bindings). + +hidden_residuals(ResidueVars, Bindings, Goal) :- + term_attvars(ResidueVars, Remaining), + term_attvars(Bindings, QueryVars), + subtract_vars(Remaining, QueryVars, HiddenVars), + copy_term(HiddenVars, _, Goal). + +subtract_vars(All, Subtract, Remaining) :- + sort(All, AllSorted), + sort(Subtract, SubtractSorted), + ord_subtract(AllSorted, SubtractSorted, Remaining). + +ord_subtract([], _Not, []). +ord_subtract([H1|T1], L2, Diff) :- + diff21(L2, H1, T1, Diff). + +diff21([], H1, T1, [H1|T1]). +diff21([H2|T2], H1, T1, Diff) :- + compare(Order, H1, H2), + diff3(Order, H1, T1, H2, T2, Diff). + +diff12([], _H2, _T2, []). +diff12([H1|T1], H2, T2, Diff) :- + compare(Order, H1, H2), + diff3(Order, H1, T1, H2, T2, Diff). + +diff3(<, H1, T1, H2, T2, [H1|Diff]) :- + diff12(T1, H2, T2, Diff). +diff3(=, _H1, T1, _H2, T2, Diff) :- + ord_subtract(T1, T2, Diff). +diff3(>, H1, T1, _H2, T2, Diff) :- + diff21(T2, H1, T1, Diff). + + +%! project_constraints(+Bindings, +ResidueVars) is det. +% +% Call :project_attributes/2 if the Prolog flag +% `toplevel_residue_vars` is set to `project`. + +project_constraints(Bindings, ResidueVars) :- + !, + term_attvars(Bindings, AttVars), + phrase(attribute_modules(AttVars), Modules0), + sort(Modules0, Modules), + term_variables(Bindings, QueryVars), + project_attributes(Modules, QueryVars, ResidueVars). +project_constraints(_, _). + +project_attributes([], _, _). +project_attributes([M|T], QueryVars, ResidueVars) :- + ( current_predicate(M:project_attributes/2), + catch(M:project_attributes(QueryVars, ResidueVars), E, + print_message(error, E)) + -> true + ; true + ), + project_attributes(T, QueryVars, ResidueVars). + +attribute_modules([]) --> []. +attribute_modules([H|T]) --> + { get_attrs(H, Attrs) }, + attrs_modules(Attrs), + attribute_modules(T). + +attrs_modules([]) --> []. +attrs_modules(att(Module, _, More)) --> + [Module], + attrs_modules(More). + + +%! join_same_bindings(Bindings0, Bindings) +% +% Join variables that are bound to the same value. Note that we +% return the _last_ value. This is because the factorization may +% be different and ultimately the names will be printed as V1 = +% V2, ... VN = Value. Using the last, Value has the factorization +% of VN. + +join_same_bindings([], []). +join_same_bindings([Name=V0|T0], [[Name|Names]=V|T]) :- + take_same_bindings(T0, V0, V, Names, T1), + join_same_bindings(T1, T). + +take_same_bindings([], Val, Val, [], []). +take_same_bindings([Name=V1|T0], V0, V, [Name|Names], T) :- + V0 == V1, + !, + take_same_bindings(T0, V1, V, Names, T). +take_same_bindings([Pair|T0], V0, V, Names, [Pair|T]) :- + take_same_bindings(T0, V0, V, Names, T). + + +%! omit_qualifiers(+QGoals, +TypeIn, -Goals) is det. +% +% Omit unneeded module qualifiers from QGoals relative to the +% given module TypeIn. + + +omit_qualifiers([], _, []). +omit_qualifiers([Goal0|Goals0], TypeIn, [Goal|Goals]) :- + omit_qualifier(Goal0, TypeIn, Goal), + omit_qualifiers(Goals0, TypeIn, Goals). + +omit_qualifier(M:G0, TypeIn, G) :- + M == TypeIn, + !, + omit_meta_qualifiers(G0, TypeIn, G). +omit_qualifier(M:G0, TypeIn, G) :- + predicate_property(TypeIn:G0, imported_from(M)), + \+ predicate_property(G0, transparent), + !, + G0 = G. +omit_qualifier(_:G0, _, G) :- + predicate_property(G0, built_in), + \+ predicate_property(G0, transparent), + !, + G0 = G. +omit_qualifier(M:G0, _, M:G) :- + atom(M), + !, + omit_meta_qualifiers(G0, M, G). +omit_qualifier(G0, TypeIn, G) :- + omit_meta_qualifiers(G0, TypeIn, G). + +omit_meta_qualifiers(V, _, V) :- + var(V), + !. +omit_meta_qualifiers((QA,QB), TypeIn, (A,B)) :- + !, + omit_qualifier(QA, TypeIn, A), + omit_qualifier(QB, TypeIn, B). +omit_meta_qualifiers(tnot(QA), TypeIn, tnot(A)) :- + !, + omit_qualifier(QA, TypeIn, A). +omit_meta_qualifiers(freeze(V, QGoal), TypeIn, freeze(V, Goal)) :- + callable(QGoal), + !, + omit_qualifier(QGoal, TypeIn, Goal). +omit_meta_qualifiers(when(Cond, QGoal), TypeIn, when(Cond, Goal)) :- + callable(QGoal), + !, + omit_qualifier(QGoal, TypeIn, Goal). +omit_meta_qualifiers(G, _, G). + + +%! bind_vars(+BindingsIn, -Bindings) +% +% Bind variables to '$VAR'(Name), so they are printed by the names +% used in the query. Note that by binding in the reverse order, +% variables bound to one another come out in the natural order. + +bind_vars(Bindings0, Bindings) :- + bind_query_vars(Bindings0, Bindings, SNames), + bind_skel_vars(Bindings, Bindings, SNames, 1, _). + +bind_query_vars([], [], []). +bind_query_vars([binding(Names,Var,[Var2=Cycle])|T0], + [binding(Names,Cycle,[])|T], [Name|SNames]) :- + Var == Var2, % also implies var(Var) + !, + '$last'(Names, Name), + Var = '$VAR'(Name), + bind_query_vars(T0, T, SNames). +bind_query_vars([B|T0], [B|T], AllNames) :- + B = binding(Names,Var,Skel), + bind_query_vars(T0, T, SNames), + ( var(Var), \+ attvar(Var), Skel == [] + -> AllNames = [Name|SNames], + '$last'(Names, Name), + Var = '$VAR'(Name) + ; AllNames = SNames + ). + + + +bind_skel_vars([], _, _, N, N). +bind_skel_vars([binding(_,_,Skel)|T], Bindings, SNames, N0, N) :- + bind_one_skel_vars(Skel, Bindings, SNames, N0, N1), + bind_skel_vars(T, Bindings, SNames, N1, N). + +%! bind_one_skel_vars(+Subst, +Bindings, +VarName, +N0, -N) +% +% Give names to the factorized variables that do not have a name +% yet. This introduces names _S, avoiding duplicates. If a +% factorized variable shares with another binding, use the name of +% that variable. +% +% @tbd Consider the call below. We could remove either of the +% A = x(1). Which is best? +% +% == +% ?- A = x(1), B = a(A,A). +% A = x(1), +% B = a(A, A), % where +% A = x(1). +% == + +bind_one_skel_vars([], _, _, N, N). +bind_one_skel_vars([Var=Value|T], Bindings, Names, N0, N) :- + ( var(Var) + -> ( '$member'(binding(Names, VVal, []), Bindings), + same_term(Value, VVal) + -> '$last'(Names, VName), + Var = '$VAR'(VName), + N2 = N0 + ; between(N0, infinite, N1), + atom_concat('_S', N1, Name), + \+ memberchk(Name, Names), + !, + Var = '$VAR'(Name), + N2 is N1 + 1 + ) + ; N2 = N0 + ), + bind_one_skel_vars(T, Bindings, Names, N2, N). + + +%! factorize_bindings(+Bindings0, -Factorized) +% +% Factorize cycles and sharing in the bindings. + +factorize_bindings([], []). +factorize_bindings([Name=Value|T0], [binding(Name, Skel, Subst)|T]) :- + '$factorize_term'(Value, Skel, Subst0), + ( current_prolog_flag(toplevel_print_factorized, true) + -> Subst = Subst0 + ; only_cycles(Subst0, Subst) + ), + factorize_bindings(T0, T). + + +only_cycles([], []). +only_cycles([B|T0], List) :- + ( B = (Var=Value), + Var = Value, + acyclic_term(Var) + -> only_cycles(T0, List) + ; List = [B|T], + only_cycles(T0, T) + ). + + +%! filter_bindings(+Bindings0, -Bindings) +% +% Remove bindings that must not be printed. There are two of them: +% Variables whose name start with '_' and variables that are only +% bound to themselves (or, unbound). + +filter_bindings([], []). +filter_bindings([H0|T0], T) :- + hide_vars(H0, H), + ( ( arg(1, H, []) + ; self_bounded(H) + ) + -> filter_bindings(T0, T) + ; T = [H|T1], + filter_bindings(T0, T1) + ). + +hide_vars(binding(Names0, Skel, Subst), binding(Names, Skel, Subst)) :- + hide_names(Names0, Skel, Subst, Names). + +hide_names([], _, _, []). +hide_names([Name|T0], Skel, Subst, T) :- + ( sub_atom(Name, 0, _, _, '_'), + current_prolog_flag(toplevel_print_anon, false), + sub_atom(Name, 1, 1, _, Next), + char_type(Next, prolog_var_start) + -> true + ; Subst == [], + Skel == '$VAR'(Name) + ), + !, + hide_names(T0, Skel, Subst, T). +hide_names([Name|T0], Skel, Subst, [Name|T]) :- + hide_names(T0, Skel, Subst, T). + +self_bounded(binding([Name], Value, [])) :- + Value == '$VAR'(Name). + +%! get_respons(-Action, +Chp) +% +% Read the continuation entered by the user. + +:- if(current_prolog_flag(emscripten, true)). +get_respons(Action, _Chp) :- + '$can_yield', + !, + await(more, ActionS), + atom_string(Action, ActionS). +:- endif. +get_respons(Action, Chp) :- + repeat, + flush_output(user_output), + get_single_char(Char), + answer_respons(Char, Chp, Action), + ( Action == again + -> print_message(query, query(action)), + fail + ; ! + ). + +answer_respons(Char, _, again) :- + '$in_reply'(Char, '?h'), + !, + print_message(help, query(help)). +answer_respons(Char, _, redo) :- + '$in_reply'(Char, ';nrNR \t'), + !, + print_message(query, if_tty([ansi(bold, ';', [])])). +answer_respons(Char, _, redo) :- + '$in_reply'(Char, 'tT'), + !, + trace, + save_debug, + print_message(query, if_tty([ansi(bold, '; [trace]', [])])). +answer_respons(Char, _, continue) :- + '$in_reply'(Char, 'ca\n\ryY.'), + !, + print_message(query, if_tty([ansi(bold, '.', [])])). +answer_respons(0'b, _, show_again) :- %' + !, + break. +answer_respons(0'*, Chp, show_again) :- %' + !, + print_last_chpoint(Chp). +answer_respons(Char, _, show_again) :- + print_predicate(Char, Pred, Options), + !, + print_message(query, if_tty(['~w'-[Pred]])), + set_prolog_flag(answer_write_options, Options). +answer_respons(-1, _, show_again) :- + !, + print_message(query, halt('EOF')), + halt(0). +answer_respons(Char, _, again) :- + print_message(query, no_action(Char)). + +print_predicate(0'w, [write], [ quoted(true), + spacing(next_argument) + ]). +print_predicate(0'p, [print], [ quoted(true), + portray(true), + max_depth(10), + spacing(next_argument) + ]). + + +print_last_chpoint(Chp) :- + current_predicate(print_last_choice_point/0), + !, + print_last_chpoint_(Chp). +print_last_chpoint(Chp) :- + use_module(library(prolog_stack), [print_last_choicepoint/2]), + print_last_chpoint_(Chp). + +print_last_chpoint_(Chp) :- + print_last_choicepoint(Chp, [message_level(information)]). + + + /******************************* + * EXPANSION * + *******************************/ + +:- user:dynamic(expand_query/4). +:- user:multifile(expand_query/4). + +call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- + user:expand_query(Goal, Expanded, Bindings, ExpandedBindings), + !. +call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- + toplevel_variables:expand_query(Goal, Expanded, Bindings, ExpandedBindings), + !. +call_expand_query(Goal, Goal, Bindings, Bindings). + + +:- user:dynamic(expand_answer/2). +:- user:multifile(expand_answer/2). + +call_expand_answer(Goal, Expanded) :- + user:expand_answer(Goal, Expanded), + !. +call_expand_answer(Goal, Expanded) :- + toplevel_variables:expand_answer(Goal, Expanded), + !. +call_expand_answer(Goal, Goal). + + + +/* Part of SWI-Prolog + + Author: Jan Wielemaker + E-mail: J.Wielemaker@vu.nl + WWW: http://www.swi-prolog.org + Copyright (c) 1985-2020, University of Amsterdam + VU University Amsterdam + CWI Amsterdam + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in + the documentation and/or other materials provided with the + distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. +*/ +/* +:- module('$history', + [ read_term_with_history/2, % -Term, +Line + '$save_history_line'/1, % +Line + '$clean_history'/0, + '$load_history'/0, + '$save_history_event'/1 + ]). + +%! read_term_with_history(-Term, +Options) +% +% Read a term guide by Options and maintain a history similar to most +% Unix shells. +% +% When read_history reads a term of the form $silent(Goal), it will +% call Goal and pretend it has not seen anything. This hook is used by +% the GNU-Emacs interface to for communication between GNU-EMACS and +% SWI-Prolog. + +read_term_with_history(Term, Options) :- + '$option'(prompt(Prompt), Options, '~! ?> '), + '$option'(input(Input), Options, user_input), + repeat, + prompt_history(Prompt), + read_query_line(Input, Raw), + read_history_(Raw, Term, Options), + !. +*/ +read_history_(Raw, _Term, Options) :- + '$option'(show(Raw), Options, history), + list_history, + !, + fail. +read_history_(Raw, _Term, Options) :- + '$option'(help(Raw), Options, '!help'), + '$option'(show(Show), Options, '!history'), + print_message(help, history(help(Show, Raw))), + !, + fail. +read_history_(Raw, Term, Options) :- + expand_history(Raw, Expanded, Changed), + '$save_history_line'(Expanded), + '$option'(module(Module), Options, Var), + ( Module == Var + -> '$current_typein_module'(Module) + ; true + ), + ( '$select'(variable_names(Bindings), Options, Options1) + -> true + ; Options1 = Options, + i(Bindings) % ignore + ), + catch(read_term_from_atom(Expanded, Term0, + [ module(Module), + variable_names(Bindings0) + | Options1 + ]), + E, + ( print_message(error, E), + fail + )), + ( var(Term0) + -> Term = Term0, + Bindings = Bindings0 + ; Term0 = '$silent'(Goal) + -> user:ignore(Goal), + read_term_with_history(Term, Options) + ; save_event(Expanded, Options), + ( Changed == true + -> print_message(query, history(expanded(Expanded))) + ; true + ), + Term = Term0, + Bindings = Bindings0 + ). + +i(_). + +% list_history +% Write history events to the current output stream. + +list_history :- + ( '$history'(Last, _) + -> true + ; Last = 0 + ), + history_depth_(Depth), + plus(First, Depth, Last), + findall(Nr/Event, + ( between(First, Last, Nr), + '$history'(Nr, Event) + ), + Events), + print_message(query, history(history(Events))). + +'$clean_history' :- + retractall('$history'(_,_)). + +%! '$load_history' is det. +% +% Load persistent history using a hook + +'$load_history' :- + '$clean_history', + current_prolog_flag(history, Depth), + Depth > 0, + catch(prolog:history(current_input, load), _, true), !. +'$load_history'. + + +%% prompt_history(+Prompt) +% +% Give prompt, substituting '~!' by the event number. + +prompt_history('') :- + !, + ttyflush. +prompt_history(Prompt) :- + ( '$history'(Last, _) + -> This is Last + 1 + ; This = 1 + ), + atom_codes(Prompt, SP), + atom_codes(This, ST), + ( atom_codes('~!', Repl), + substitute(Repl, ST, SP, String) + -> prompt1(String) + ; prompt1(Prompt) + ), + ttyflush. + +% substitute(+Old, +New, +String, -Substituted) +% substitute first occurence of Old in String by New + +substitute(Old, New, String, Substituted) :- + '$append'(Head, OldAndTail, String), + '$append'(Old, Tail, OldAndTail), + !, + '$append'(Head, New, HeadAndNew), + '$append'(HeadAndNew, Tail, Substituted), + !. + +%! '$save_history_line'(+Line) +% +% Add Line to the command line editing history. + +:- multifile + prolog:history_line/2. + +'$save_history_line'(end_of_file) :- !. +'$save_history_line'(Line) :- + format(string(CompleteLine), '~W~W', + [ Line, [partial(true)], + '.', [partial(true)] + ]), + catch(prolog:history(user_input, add(CompleteLine)), _, fail), + !. +'$save_history_line'(_). + +%! save_event(+Event, +Options) +% +% Save Event into the history system unless it appears in the +% option `no_save`. + +save_event(Event, Options) :- + '$option'(no_save(Dont), Options), + memberchk(Event, Dont), + !. +save_event(Event, _) :- + '$save_history_event'(Event). + +%! '$save_history_event'(+Event) is det. +% +% Save an input line as text into the !- based history. Event is one +% of +% +% * a *string*. The event is added with a next number at the end. +% * a *pair*. The event is added with the given sequence number. + +:- thread_local + '$history'/2. + +'$save_history_event'(Num-String) :- + integer(Num), string(String), + !, + asserta('$history'(Num, String)), + truncate_history(Num). +'$save_history_event'(Event) :- + to_string(Event, Event1), + !, + last_event(Num, String), + ( Event1 == String + -> true + ; New is Num + 1, + asserta('$history'(New, Event1)), + truncate_history(New) + ). +'$save_history_event'(Event) :- + '$type_error'(history_event, Event). + +last_event(Num, String) :- + '$history'(Num, String), + !. +last_event(0, ""). + +to_string(String, String) :- + string(String), + !. +to_string(Atom, String) :- + atom_string(Atom, String). + +truncate_history(New) :- + history_depth_(Depth), + remove_history(New, Depth). + +remove_history(New, Depth) :- + New - Depth =< 0, + !. +remove_history(New, Depth) :- + Remove is New - Depth, + retract('$history'(Remove, _)), + !. +remove_history(_, _). + +% history_depth_(-Depth) +% Define the depth to which to keep the history. + +history_depth_(N) :- + current_prolog_flag(history, N), + integer(N), + N > 0, + !. +history_depth_(25). + +% expand_history(+Raw, -Expanded) +% Expand Raw using the available history list. Expandations performed +% are: +% +% !match % Last event starting +% !n % Event nr. +% !! % last event +% +% Note: the first character after a '!' should be a letter or number to +% avoid problems with the cut. + +expand_history(Raw, Expanded, Changed) :- + atom_chars(Raw, RawString), + expand_history2(RawString, ExpandedString, Changed), + atom_chars(Expanded, ExpandedString), + !. + +expand_history2([!], [!], false) :- !. +expand_history2([!, C|Rest], [!|Expanded], Changed) :- + not_event_char(C), + !, + expand_history2([C|Rest], Expanded, Changed). +expand_history2([!|Rest], Expanded, true) :- + !, + match_event(Rest, Event, NewRest), + '$append'(Event, RestExpanded, Expanded), + !, + expand_history2(NewRest, RestExpanded, _). +expand_history2(['\''|In], ['\''|Out], Changed) :- + !, + skip_quoted(In, '\'', Out, Tin, Tout), + expand_history2(Tin, Tout, Changed). +expand_history2(['"'|In], ['"'|Out], Changed) :- + !, + skip_quoted(In, '"', Out, Tin, Tout), + expand_history2(Tin, Tout, Changed). +expand_history2([H|T], [H|R], Changed) :- + !, + expand_history2(T, R, Changed). +expand_history2([], [], false). + +skip_quoted([Q|T],Q,[Q|R], T, R) :- !. +skip_quoted([\,Q|T0],Q,[\,Q|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([Q,Q|T0],Q,[Q,Q|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([C|T0],Q,[C|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([], _, [], [], []). + +% get_last_event(-String) +% return last event typed as a string + +get_last_event(Event) :- + '$history'(_, Atom), + atom_chars(Atom, Event), + !. +get_last_event(_) :- + print_message(query, history(no_event)), + fail. + +% match_event(+Spec, -Event, -Rest) +% Use Spec as a specification of and event and return the event as Event +% and what is left of Spec as Rest. + +match_event(Spec, Event, Rest) :- + find_event(Spec, Event, Rest), + !. +match_event(_, _, _) :- + print_message(query, history(no_event)), + fail. + +not_event_char(C) :- code_type(C, csym), !, fail. +not_event_char(!) :- !, fail. +not_event_char(_). + +find_event([!|Left], Event, Left) :- + !, + get_last_event(Event). +find_event([N|Rest], Event, Left) :- + code_type(N, digit), + !, + take_number([N|Rest], String, Left), + number_codes(Number, String), + '$history'(Number, Atom), + atom_chars(Atom, Event). +find_event(Spec, Event, Left) :- + take_string(Spec, String, Left), + matching_event(String, Event). + +take_string([C|Rest], [C|String], Left) :- + code_type(C, csym), + !, + take_string(Rest, String, Left). +take_string([C|Rest], [], [C|Rest]) :- !. +take_string([], [], []). + +take_number([C|Rest], [C|String], Left) :- + code_type(C, digit), + !, + take_string(Rest, String, Left). +take_number([C|Rest], [], [C|Rest]) :- !. +take_number([], [], []). + +% matching_event(+String, -Event) +% +% Return first event with prefix String as a Prolog string. + +matching_event(String, Event) :- + '$history'(_, AtomEvent), + atom_chars(AtomEvent, Event), + '$append'(String, _, Event), + !. + diff --git a/metta_vspace/pyswip-12-15/metta_types.pl b/metta_vspace/pyswip-12-15/metta_types.pl new file mode 100755 index 00000000..cc99d99a --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_types.pl @@ -0,0 +1,1156 @@ + + + +mnotrace(G):- once(G). + +is_decl_type(ST):- metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). +is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). +is_decl_type(ST):- \+ atom(ST),!,fail. +is_decl_type('%Undefined%'). is_decl_type('Number'). +is_decl_type('String'). is_decl_type('Bool'). +is_decl_type('Type'). is_decl_type('Symbol'). +is_decl_type('Expression'). +is_decl_type('Any'). is_decl_type('Atom'). +is_decl_type(Type):- is_decl_type_l(Type). +is_decl_type_l('StateMonad'). is_decl_type_l('List'). + + +last_type(List,Type):- is_list(List),last(List,Type),is_type(Type). +last_type(Type,Type):- is_type(Type),!. + +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval(EvalMe):- is_list(EvalMe),!. + + +args_violation(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !, fail. +args_violation(Depth,Self,[A|Args],[L|List]):- once(arg_violation(Depth,Self,A,L) ; args_violation(Depth,Self,Args,List)). +arg_violation(Depth,Self,A,L):- \+ (get_type0(Depth,Self,A,T), \+ type_violation(T,L)). +%arg_violation(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_violation(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!,fail. +type_violation(T,L):- T\=L. + + +not_arg_violation(Depth,Self,Arg,Type):- + \+ arg_violation(Depth,Self,Arg,Type), + arg_conform(Depth,Self,Arg,Type). + + +args_conform(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !. +args_conform(Depth,Self,[A|Args],[L|List]):- arg_conform(Depth,Self,A,L) , args_conform(Depth,Self,Args,List). +arg_conform(Depth,Self,A,L):- get_type(Depth,Self,A,T), type_conform(T,L),!. +arg_conform(_Dpth,_Slf,_,_). +%arg_conform(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_conform(T,L):- T=L,!. +type_conform(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!. + +is_nonspecific_type(Var):- var(Var),!. +is_nonspecific_type('%Undefined%'). +is_nonspecific_type([]). +is_nonspecific_type('Atom'). +is_nonspecific_type('Any'). + +%get_type(Depth,Self,Val,Type):- get_type01(Depth,Self,Val,Type). +get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. + +get_type9(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type9(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type9(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. +get_type9(Depth,Self,Val,Type):- get_type2(Depth,Self,Val,Type), ( is_list(Type)->! ; true). +get_type9(_Dpth,_Slf,_Vl,[]). + +get_type2(Depth,_Slf,Type,Type):- Depth<1,!. +%get_type(Depth,Self,Val,Type):- is_debugging(eval), !, +% ftrace(get_type0(Depth,Self,Val,Type)). +get_type2(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type2(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type). + + +is_space_type(Space,is_asserted_space):- was_asserted_space(Space),!. +is_space_type(Space,Test):- no_repeats(Test,space_type_method(Test,_,_)),call(Test,Space),!. + +is_state_type(State,Test):- no_repeats(Test,state_type_method(Test,_,_)),call(Test,State),!. + +%is_dynaspace(Expr):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +is_dynaspace(S):- var(S),!,fail. +is_dynaspace(S):- was_asserted_space(S). +is_dynaspace(S):- py_named_space(S). +is_dynaspace(S):- typed_list(S,'hyperon::space::DynSpace',_). +% notrace( is_space_type(Expr,_)),!. +get_type0(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type0(Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, + ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(Depth2,Self,Val,Type))). +get_type0(Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(Depth,Self,Val,Type),!. +get_type0(Depth,Self,Val,Type):- get_type03(Depth,Self,Val,Type),!. + +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +/* +(: Left + (-> %Undefined% Either)) + +(: (Left %Undefined%) Either) + +*/ +get_type01(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type01(_Dpth,_Slf, [],'%Undefined%'):- !. +get_type01(_Dpth,_Slf,Val,'Number'):- number(Val). +get_type01(_Dpth,_Slf,Val,'Integer'):- integer(Val). +get_type01(_Dpth,_Slf,Val,'Decimal'):- float(Val). +get_type01(_Dpth,_Slf,Val,'Rational'):- rational(Val). +get_type01(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type01(_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). +get_type01(_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. +get_type01(_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). +get_type01(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). +get_type01(Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(Depth2,Self,Val,Type). +%get_type01(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +get_type01(_Dpth,_Slf,_Val,'String'). +get_type01(_Dpth,_Slf,_Val,'Symbol'). + + + +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. +get_type02(Depth,Self,[Op|Expr],Type):- maplist(get_type(Depth,Self),Expr,Types), + metta_type(Self,[Op|Types],Type). + + +get_type03(Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), + get_type03(Depth,Self,[Op|Args],Type1), + get_type(Depth,Self,Arg,ArgType), + ignore(sub_var(ArgType,Type1)->true;(sub_term(ST,Type1),var(ST),ST=ArgType)), + last(Type1,Type). + +get_type03(_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). +get_type03(Depth,Self,[Op|Args],Type):- symbol(Op), + get_operator_typedef(Self,Op,Params,RetType), + % Fills in type variables when possible + ignore(args_conform(Depth,Self,Args,Params)), + % unitests: arg violations should return () + (\+ args_violation(Depth,Self,Args,Params) -> Type=RetType ; (Type=[],!)). + + +get_type03(Depth,Self,Expr,Type):- get_type02(Depth,Self,Expr,Type). + +get_type03(Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, + eval_args(Depth2,Self,EvalMe,Val), + \+ needs_eval(Val),!, + get_type(Depth2,Self,Val,Type). + +get_type03(Depth,Self,Expr,Type):- Depth2 is Depth-1, + eval_args(Depth2, Self,Expr,Val), Expr\=@=Val,!, + get_type(Depth2,Self,Val,Type). + +get_type03(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). + +get_type03(_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. + +get_type03(Depth,Self,List,Types):- List\==[], is_list(List), + Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). + + +get_type03(_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. + +%get_type0(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +%get_type(Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +%get_type0(_Dpth,_Slf,_,'%Undefined%'):- fail. + +state_decltype(Expr,Type):- functor(Expr,_,A),arg(A,Expr,Type),once(var(Type);is_decl_type(Type)). + + +get_type1(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type1(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type1(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type1(Depth,Self,Val,Type). + + +get_type1(Depth,Self,EvalMe,Type):- needs_eval(EvalMe), + eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, + get_type1(Depth,Self,Val,Type). + +get_type1(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type1(Depth,_Slf,Type,Type):- Depth<1,!. +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type1(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(Depth2,Self),List,Types). +get_type1(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type1(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(Depth2,Self,Type2,Type). +%get_type1(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type1(Depth,Self,Expr,Type):-Depth2 is Depth-1, + eval_args(Depth2,Self,Expr,Val), + Expr\=@=Val,get_type1(Depth2,Self,Val,Type). + + +get_type1(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type1(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type1(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type1(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type1(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type1(Depth2,Self,Ele,Type)),!. +%get_type1(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type1(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type1(_Dpth,_Slf,_,'%Undefined%'):- fail. +%get_type1(Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(Depth2,Self,Val,Type). + + + +as_prolog(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). + + + +adjust_args(_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. +adjust_args(Depth,Self,Op,X,Y):- + get_operator_typedef(Self,Op,Params,RetType), + try_adjust_arg_types(RetType,Depth,Self,Params,X,Y). + +try_adjust_arg_types(RetType,Depth,Self,Params,X,Y):- + as_prolog(Depth,Self,X,M), + args_conform(Depth,Self,M,Params),!, + set_type(Depth,Self,Y,RetType), + into_typed_args(Depth,Self,Params,M,Y). +%adjust_args(Depth,Self,_,X,Y):- is_list(X), !, maplist(eval_args(Depth,Self),X,Y). +%adjust_args(Depth,Self,_,X,Y):- is_list(X), !, maplist(as_prolog(Depth,Self),X,Y),!. +adjust_args(Depth,Self,_,X,Y):- as_prolog(Depth,Self,X,Y). + +into_typed_args(_Dpth,_Slf,T,M,Y):- (\+ iz_conz(T); \+ iz_conz(M)),!, M=Y. +into_typed_args(Depth,Self,[T|TT],[M|MM],[Y|YY]):- + into_typed_arg(Depth,Self,T,M,Y), + into_typed_args(Depth,Self,TT,MM,YY). + +into_typed_arg(_Dpth,Self,T,M,Y):- var(M),!,put_attr(M,metta_type,Self=T),put_attr(Y,metta_type,Self=T),Y=M. +into_typed_arg(Depth,Self,T,M,Y):- into_typed_arg0(Depth,Self,T,M,Y)*->true;M=Y. + +into_typed_arg0(Depth,Self,T,M,Y):- var(T), !, get_type(Depth,Self,M,T), + (wants_eval_kind(T)->eval_args(Depth,Self,M,Y);Y=M). + +into_typed_arg0(Depth,Self,T,M,Y):- is_pro_eval_kind(T),!,eval_args(Depth,Self,M,Y). +into_typed_arg0(Depth,Self,T,M,Y):- ground(M),!, \+ arg_violation(Depth,Self,M,T),Y=M. +into_typed_arg0(_Dpth,_Slf,T,M,Y):- is_non_eval_kind(T),!,M=Y. +into_typed_arg0(Depth,Self,_,M,Y):- eval_args(Depth,Self,M,Y). + +set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. +set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) + *->Was=Type + ; if_t(var(Var),put_attr(Var,metta_type,Self=Type)). + +metta_type:attr_unify_hook(Self=Type,NewValue):- + get_type(20,Self,NewValue,Was), + can_assign(Was,Type). + +can_assign(Was,Type):- Was=Type,!. +can_assign(Was,Type):- (is_nonspecific_type(Was);is_nonspecific_type(Type)),!. +can_assign(_Ws,_Typ). + +is_non_eval_kind(Type):- is_nonspecific_type(Type),!. +is_non_eval_kind('Atom'). + +is_pro_eval_kind('Number'). +is_pro_eval_kind('Symbol'). +is_pro_eval_kind('Bool'). + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +%is_user_defined_goal(Self,[H|_]):- is_user_defined_head(Eq,Self,H). + +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +%s_user_defined_head_f1(Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + + + +is_special_op(Op):- current_self(Self),is_special_op(Self,Op). + +is_special_op(_Slf,F):- \+ atom(F), \+ var(F), !, fail. +is_special_op(Self,Op):- get_operator_typedef(Self,Op,Params,_RetType), + maplist(is_non_eval_kind,Params). +is_special_op(_Slf,Op):- is_special_builtin(Op). + +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. +%is_function(F):- atom(F). +is_metta_data_functor(Eq,_Othr,H):- clause(is_data_functor(H),_). +is_metta_data_functor(Eq,Other,H):- H\=='Right', H\=='Something', + % metta_type(Other,H,_), % fail, + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_), + \+ is_metta_builtin(H), + \+ is_comp_op(H,_), + \+ is_math_op(H,_,_). + + +get_operator_typedef(Self,Op,Params,RetType):- + get_operator_typedef1(Self,Op,Params,RetType)*->true; + get_operator_typedef2(Self,Op,Params,RetType). +get_operator_typedef1(Self,Op,Params,RetType):- + metta_type(Self,Op,['->'|List]), + append(Params,[RetType],List). +get_operator_typedef2(Self,Op,Params,RetType):- + nop(wdmsg(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + + +is_special_builtin('case'). +is_special_builtin(':'). + +%is_special_builtin('='). +is_special_builtin('->'). +is_special_builtin('bind!'). +%is_special_builtin('new-space'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('if'). +is_special_builtin('rtrace'). +is_special_builtin('or'). +is_special_builtin('and'). +is_special_builtin('not'). +is_special_builtin('match'). +is_special_builtin('call'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('nop'). +is_special_builtin('assertEqual'). +is_special_builtin('assertEqualToResult'). +is_special_builtin('collapse'). +is_special_builtin('superpose'). +%is_special_builtin('=='). + +is_metta_builtin(Special):- is_special_builtin(Special). + +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('compile!'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + + +% Comparison Operators in Prolog +% is_comp_op('=', 2). % Unification +is_comp_op('\\=', 2). % Not unifiable +is_comp_op('==', 2). % Strict equality +is_comp_op('\\==', 2). % Strict inequality +is_comp_op('@<', 2). % Term is before +is_comp_op('@=<', 2). % Term is before or equal +is_comp_op('@>', 2). % Term is after +is_comp_op('@>=', 2). % Term is after or equal +is_comp_op('=<', 2). % Less than or equal +is_comp_op('<', 2). % Less than +is_comp_op('>=', 2). % Greater than or equal +is_comp_op('>', 2). % Greater than +is_comp_op('is', 2). % Arithmetic equality +is_comp_op('=:=', 2). % Arithmetic exact equality +is_comp_op('=\\=', 2). % Arithmetic inequality + +% Arithmetic Operations +is_math_op('*', 2, exists). % Multiplication +is_math_op('**', 2, exists). % Exponentiation +is_math_op('+', 1, exists). % Unary Plus +is_math_op('+', 2, exists). % Addition +is_math_op('-', 1, exists). % Unary Minus +is_math_op('-', 2, exists). % Subtraction +is_math_op('.', 2, exists). % Array Indexing or Member Access (Depends on Context) +is_math_op('/', 2, exists). % Division +is_math_op('//', 2, exists). % Floor Division +is_math_op('///', 2, exists). % Alternative Division Operator (Language Specific) +is_math_op('/\\', 2, exists). % Bitwise AND +is_math_op('<<', 2, exists). % Bitwise Left Shift +is_math_op('>>', 2, exists). % Bitwise Right Shift +is_math_op('\\', 1, exists). % Bitwise NOT +is_math_op('\\/', 2, exists). % Bitwise OR +is_math_op('^', 2, exists). % Bitwise XOR +is_math_op('abs', 1, exists). % Absolute Value +is_math_op('acos', 1, exists). % Arc Cosine +is_math_op('acosh', 1, exists). % Hyperbolic Arc Cosine +is_math_op('asin', 1, exists). % Arc Sine +is_math_op('asinh', 1, exists). % Hyperbolic Arc Sine +is_math_op('atan', 1, exists). % Arc Tangent +is_math_op('atan2', 2, exists). % Two-Argument Arc Tangent +is_math_op('atanh', 1, exists). % Hyperbolic Arc Tangent +is_math_op('cbrt', 1, exists). % Cube Root +is_math_op('ceil', 1, exists). % Ceiling Function +is_math_op('ceiling', 1, exists). % Ceiling Value +is_math_op('cmpr', 2, exists). % Compare Two Values (Language Specific) +is_math_op('copysign', 2, exists). % Copy the Sign of a Number +is_math_op('cos', 1, exists). % Cosine Function +is_math_op('cosh', 1, exists). % Hyperbolic Cosine +is_math_op('cputime', 0, exists). % CPU Time +is_math_op('degrees', 1, exists). % Convert Radians to Degrees +is_math_op('denominator', 1, exists). % Get Denominator of Rational Number +is_math_op('div', 2, exists). % Integer Division +is_math_op('e', 0, exists). % Euler's Number +is_math_op('epsilon', 0, exists). % Machine Epsilon +is_math_op('erf', 1, exists). % Error Function +is_math_op('erfc', 1, exists). % Complementary Error Function +is_math_op('eval', 1, exists). % Evaluate Expression +is_math_op('exp', 1, exists). % Exponential Function +is_math_op('expm1', 1, exists). % exp(x) - 1 +is_math_op('fabs', 1, exists). % Absolute Value (Floating-Point) +is_math_op('float', 1, exists). % Convert Rational to Float +is_math_op('float_fractional_part', 1, exists). % Fractional Part of Float +is_math_op('float_integer_part', 1, exists). % Integer Part of Float +is_math_op('floor', 1, exists). % Floor Value +is_math_op('fmod', 2, exists). % Floating-Point Modulo Operation +is_math_op('frexp', 2, exists). % Get Mantissa and Exponent +is_math_op('fsum', 1, exists). % Accurate Floating Point Sum +is_math_op('gamma', 1, exists). % Gamma Function +is_math_op('gcd', 2, exists). % Greatest Common Divisor +is_math_op('getbit', 2, exists). % Get Bit at Position +is_math_op('hypot', 2, exists). % Euclidean Norm, Square Root of Sum of Squares +is_math_op('inf', 0, exists). % Positive Infinity +is_math_op('integer', 1, exists). % Convert Float to Integer +is_math_op('isinf', 1, exists). % Check for Infinity +is_math_op('isnan', 1, exists). % Check for Not a Number +is_math_op('lcm', 2, exists). % Least Common Multiple +is_math_op('ldexp', 2, exists). % Load Exponent of a Floating Point Number +is_math_op('lgamma', 1, exists). % Log Gamma +is_math_op('log', 1, exists). % Logarithm Base e +is_math_op('log10', 1, exists). % Base 10 Logarithm +is_math_op('log1p', 1, exists). % log(1 + x) +is_math_op('log2', 1, exists). % Base 2 Logarithm +is_math_op('lsb', 1, exists). % Least Significant Bit +is_math_op('max', 2, exists). % Maximum of Two Values +is_math_op('maxr', 2, exists). % Maximum Rational Number (Language Specific) +is_math_op('min', 2, exists). % Minimum of Two Values +is_math_op('minr', 2, exists). % Minimum Rational Number (Language Specific) +is_math_op('mod', 2, exists). % Modulo Operation +is_math_op('modf', 2, exists). % Return Fractional and Integer Parts +is_math_op('msb', 1, exists). % Most Significant Bit +is_math_op('nan', 0, exists). % Not a Number +is_math_op('nexttoward', 2, exists). % Next Representable Floating-Point Value +is_math_op('numerator', 1, exists). % Get Numerator of Rational Number +is_math_op('pi', 0, exists). % Pi +is_math_op('popcount', 1, exists). % Count of Set Bits +is_math_op('pow', 2, exists). % Exponentiation +is_math_op('powm', 3, exists). % Modulo Exponentiation +is_math_op('radians', 1, exists). % Convert Degrees to Radians +is_math_op('remainder', 2, exists). % Floating-Point Remainder +is_math_op('remquo', 3, exists). % Remainder and Part of Quotient +is_math_op('round', 1, exists). % Round to Nearest Integer +is_math_op('roundeven', 1, exists). % Round to Nearest Even Integer +is_math_op('setbit', 2, exists). % Set Bit at Position +is_math_op('signbit', 1, exists). % Sign Bit of Number +is_math_op('sin', 1, exists). % Sine Function +is_math_op('sinh', 1, exists). % Hyperbolic Sine +is_math_op('sqrt', 1, exists). % Square Root +is_math_op('tan', 1, exists). % Tangent Function +is_math_op('tanh', 1, exists). % Hyperbolic Tangent +is_math_op('testbit', 2, exists). % Test Bit at Position +is_math_op('trunc', 1, exists). % Truncate Decimal to Integer +is_math_op('ulogb', 1, exists). % Unbiased Exponent of a Floating-Point Value +is_math_op('xor', 2, exists). % Exclusive OR +is_math_op('zerop', 1, exists). % Test for Zero + + + +end_of_file. + + + +% # 1. Length of a List +% % Normal Recursive +% prolog +len([], 0). +len([_|T], N) :- + len(T, X), + N is X + 1. +% + +% % With Accumulator +% prolog +len_acc(L, N) :- + len_acc(L, 0, N). + +len_acc([], Acc, Acc). +len_acc([_|T], Acc, N) :- + NewAcc is Acc + 1, + len_acc(T, NewAcc, N). +% + +% # 2. Sum of a List +% % Normal Recursive +% prolog +sum([], 0). +sum([H|T], S) :- + sum(T, X), + S is X + H. +% + +% % With Accumulator +% prolog +sum_acc(L, S) :- + sum_acc(L, 0, S). + +sum_acc([], Acc, Acc). +sum_acc([H|T], Acc, S) :- + NewAcc is Acc + H, + sum_acc(T, NewAcc, S). +% + +% # 3. Factorial +% % Normal Recursive +% prolog +factorial(0, 1). +factorial(N, F) :- + N > 0, + X is N - 1, + factorial(X, Y), + F is N * Y. +% + +% % With Accumulator +% prolog +factorial_acc(N, F) :- + factorial_acc(N, 1, F). + +factorial_acc(0, Acc, Acc). +factorial_acc(N, Acc, F) :- + N > 0, + NewAcc is Acc * N, + NewN is N - 1, + factorial_acc(NewN, NewAcc, F). +% + +% # 4. Reverse List +% % Normal Recursive +% prolog +reverse_list([], []). +reverse_list([H|T], R) :- + reverse_list(T, RevT), + append(RevT, [H], R). +% + +% % With Accumulator +% prolog +reverse_list_acc(L, R) :- + reverse_list_acc(L, [], R). + +reverse_list_acc([], Acc, Acc). +reverse_list_acc([H|T], Acc, R) :- + reverse_list_acc(T, [H|Acc], R). +% + +% # 5. Fibonacci +% % Normal Recursive +% prolog +fibonacci(0, 0). +fibonacci(1, 1). +fibonacci(N, F) :- + N > 1, + N1 is N - 1, + N2 is N - 2, + fibonacci(N1, F1), + fibonacci(N2, F2), + F is F1 + F2. +% + +% % With Accumulator +% prolog +fibonacci_acc(N, F) :- + fibonacci_acc(N, 0, 1, F). + +fibonacci_acc(0, A, _, A). +fibonacci_acc(N, A, B, F) :- + N > 0, + NewN is N - 1, + NewB is A + B, + fibonacci_acc(NewN, B, NewB, F). +% + + + +% 6. Find an Element in a List +% # Normal Recursive +% prolog +element_in_list(X, [X|_]). +element_in_list(X, [_|T]) :- element_in_list(X, T). +% + +% # With Accumulator +% prolog +element_in_list_acc(X, L) :- element_in_list_acc(X, L, false). + +element_in_list_acc(X, [], Acc) :- Acc. +element_in_list_acc(X, [X|_], _) :- true. +element_in_list_acc(X, [_|T], Acc) :- element_in_list_acc(X, T, Acc). +% + +% 7. Check if a List is a Palindrome +% # Normal Recursive +% prolog +is_palindrome(L) :- reverse(L, L). +% + +% # With Accumulator +% prolog +is_palindrome_acc(L) :- reverse_acc(L, [], L). + +reverse_acc([], Acc, Acc). +reverse_acc([H|T], Acc, R) :- reverse_acc(T, [H|Acc], R). +% + +% 8. Calculate the Product of All Elements in a List +% # Normal Recursive +% prolog +product_list([], 1). +product_list([H|T], P) :- + product_list(T, Temp), + P is H * Temp. +% + +% # With Accumulator +% prolog +product_list_acc(L, P) :- product_list_acc(L, 1, P). + +product_list_acc([], Acc, Acc). +product_list_acc([H|T], Acc, P) :- + NewAcc is Acc * H, + product_list_acc(T, NewAcc, P). +% + +% 9. Find the Nth Element of a List +% # Normal Recursive +% prolog +nth_element(1, [H|_], H). +nth_element(N, [_|T], X) :- + N > 1, + M is N - 1, + nth_element(M, T, X). +% + +% # With Accumulator +% prolog +nth_element_acc(N, L, X) :- nth_element_acc(N, L, 1, X). + +nth_element_acc(N, [H|_], N, H). +nth_element_acc(N, [_|T], Acc, X) :- + NewAcc is Acc + 1, + nth_element_acc(N, T, NewAcc, X). +% + +% 10. Count the Occurrences of an Element in a List +% # Normal Recursive +% prolog +count_occurrences(_, [], 0). +count_occurrences(X, [X|T], N) :- + count_occurrences(X, T, M), + N is M + 1. +count_occurrences(X, [Y|T], N) :- + X \= Y, + count_occurrences(X, T, N). +% + +% # With Accumulator +% prolog +count_occurrences_acc(X, L, N) :- count_occurrences_acc(X, L, 0, N). + +count_occurrences_acc(_, [], Acc, Acc). +count_occurrences_acc(X, [X|T], Acc, N) :- + NewAcc is Acc + 1, + count_occurrences_acc(X, T, NewAcc, N). +count_occurrences_acc(X, [Y|T], Acc, N) :- + X \= Y, + count_occurrences_acc(X, T, Acc, N). +% + +% 11. Calculate the Greatest Common Divisor of Two Numbers +% # Normal Recursive +% prolog +gcd(A, 0, A) :- A > 0. +gcd(A, B, GCD) :- + B > 0, + R is A mod B, + gcd(B, R, GCD). +% + +% # With Accumulator +% prolog +gcd_acc(A, B, GCD) :- gcd_acc(A, B, 1, GCD). + +gcd_acc(A, 0, Acc, Acc) :- A > 0. +gcd_acc(A, B, Acc, GCD) :- + B > 0, + R is A mod B, + NewAcc is B * Acc, + gcd_acc(B, R, NewAcc, GCD). +% + +% 12. Check if a Number is Prime +% # Normal Recursive +% prolog +is_prime(2). +is_prime(N) :- + N > 2, + \+ (between(2, sqrt(N), X), N mod X =:= 0). +% + +% # With Accumulator +% prolog +is_prime_acc(N) :- is_prime_acc(N, 2). + +is_prime_acc(2, 2). +is_prime_acc(N, Acc) :- + N > 2, + ( + (Acc * Acc > N, !); + (N mod Acc =\= 0, NewAcc is Acc + 1, is_prime_acc(N, NewAcc)) + ). +% + +% 13. Merge Two Sorted Lists into a Sorted List +% # Normal Recursive +% prolog +merge_sorted([], L, L). +merge_sorted(L, [], L). +merge_sorted([H1|T1], [H2|T2], [H1|M]) :- + H1 =< H2, + merge_sorted(T1, [H2|T2], M). +merge_sorted([H1|T1], [H2|T2], [H2|M]) :- + H1 > H2, + merge_sorted([H1|T1], T2, M). +% + +% # With Accumulator +% prolog +merge_sorted_acc(L1, L2, L) :- merge_sorted_acc(L1, L2, [], L). + +merge_sorted_acc([], L, Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc(L, [], Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 =< H2, + merge_sorted_acc(T1, [H2|T2], [H1|Acc], M). +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 > H2, + merge_sorted_acc([H1|T1], T2, [H2|Acc], M). + +% + +% 14. Find the Last Element of a List +% # Normal Recursive +% prolog +last_element([H], H). +last_element([_|T], X) :- last_element(T, X). +% + +% # With Accumulator +% prolog +last_element_acc([H|T], X) :- last_element_acc(T, H, X). + +last_element_acc([], Acc, Acc). +last_element_acc([H|T], _, X) :- last_element_acc(T, H, X). +% + +% 15. Remove Duplicate Elements from a List +% # Normal Recursive +% prolog +remove_duplicates([], []). +remove_duplicates([H|T], [H|T1]) :- \+ member(H, T), remove_duplicates(T, T1). +remove_duplicates([_|T], T1) :- remove_duplicates(T, T1). +% + +% # With Accumulator +% prolog +remove_duplicates_acc(L, R) :- remove_duplicates_acc(L, [], R). + +remove_duplicates_acc([], Acc, Acc). +remove_duplicates_acc([H|T], Acc, R) :- + (member(H, Acc) -> remove_duplicates_acc(T, Acc, R); + remove_duplicates_acc(T, [H|Acc], R)). +% + +% 16. Check if a Binary Tree is Balanced +% # Normal Recursive +% prolog +is_balanced(null). +is_balanced(tree(L, _, R)) :- + height(L, Hl), + height(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + is_balanced(L), + is_balanced(R). +% + +% # With Accumulator +% prolog +is_balanced_acc(T) :- is_balanced_acc(T, 0). + +is_balanced_acc(null, 0). +is_balanced_acc(tree(L, _, R), H) :- + is_balanced_acc(L, Hl), + is_balanced_acc(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + H is max(Hl, Hr) + 1. +% + +% 17. Calculate the Height of a Binary Tree +% # Normal Recursive +% prolog +height(null, 0). +height(tree(L, _, R), H) :- + height(L, Hl), + height(R, Hr), + H is max(Hl, Hr) + 1. +% + +% # With Accumulator +% prolog +height_acc(T, H) :- height_acc(T, 0, H). + +height_acc(null, Acc, Acc). +height_acc(tree(L, _, R), Acc, H) :- + NewAcc is Acc + 1, + height_acc(L, NewAcc, Hl), + height_acc(R, NewAcc, Hr), + H is max(Hl, Hr). +% + +% 18. Search for an Element in a Binary Search Tree +% # Normal Recursive +% prolog +search_bst(tree(_, X, _), X). +search_bst(tree(L, Y, _), X) :- + X < Y, + search_bst(L, X). +search_bst(tree(_, Y, R), X) :- + X > Y, + search_bst(R, X). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +search_bst_acc(Tree, X) :- search_bst(Tree, X). +% + +% 19. Insert an Element into a Binary Search Tree +% # Normal Recursive +% prolog +insert_bst(null, X, tree(null, X, null)). +insert_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + insert_bst(L, X, L1). +insert_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + insert_bst(R, X, R1). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the insertion path is already determined by the BST property. +insert_bst_acc(Tree, X, NewTree) :- insert_bst(Tree, X, NewTree). +% + +% 20. Delete an Element from a Binary Search Tree +% # Normal Recursive +% prolog +delete_bst(Tree, X, NewTree) :- + remove_bst(Tree, X, NewTree). + +remove_bst(tree(L, X, R), X, Merged) :- merge_trees(L, R, Merged), !. +remove_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + remove_bst(L, X, L1). +remove_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + remove_bst(R, X, R1). + +merge_trees(null, Tree, Tree). +merge_trees(Tree, null, Tree). +merge_trees(tree(L1, X, R1), tree(L2, Y, R2), tree(Merged, Y, R2)) :- + merge_trees(tree(L1, X, R1), L2, Merged). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the deletion path is already determined by the BST property. +delete_bst_acc(Tree, X, NewTree) :- delete_bst(Tree, X, NewTree). +% + +% 21. Find the Lowest Common Ancestor in a Binary Search Tree +% # Normal Recursive +% prolog +lowest_common_ancestor(tree(_, Y, _), X, Z, Y) :- + X < Y, Z > Y; + X > Y, Z < Y. +lowest_common_ancestor(tree(L, Y, _), X, Z, LCA) :- + X < Y, Z < Y, + lowest_common_ancestor(L, X, Z, LCA). +lowest_common_ancestor(tree(_, Y, R), X, Z, LCA) :- + X > Y, Z > Y, + + + lowest_common_ancestor(R, X, Z, LCA). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +lowest_common_ancestor_acc(Tree, X, Z, LCA) :- lowest_common_ancestor(Tree, X, Z, LCA). +% + +% 22. Check if a Graph is Cyclic +% For graphs, it's better to represent them in a Prolog-friendly format, such as adjacency lists. I will use a representation where each node has a list of its neighbors. +% # Normal Recursive +% prolog +is_cyclic(Graph) :- + member(Vertex-_, Graph), + dfs(Vertex, Graph, [Vertex], _), !. + +dfs(Vertex, Graph, Visited, [Vertex|Visited]) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + member(Neighbor, Visited), !. +dfs(Vertex, Graph, Visited, FinalVisited) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + \+ member(Neighbor, Visited), + dfs(Neighbor, Graph, [Neighbor|Visited], FinalVisited). +% + +% # With Accumulator +% prolog +% Due to the way depth-first search works, a typical accumulator wouldn't be very effective. +% The visited list already acts like an accumulator. +is_cyclic_acc(Graph) :- is_cyclic(Graph). +% + +% 23. Perform a Depth-First Search on a Graph +% # Normal Recursive +% prolog +dfs_graph(Vertex, Graph) :- dfs_vertex(Vertex, Graph, []). + +dfs_vertex(Vertex, _, Visited) :- member(Vertex, Visited), !. +dfs_vertex(Vertex, Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + dfs_neighbors(Neighbors, Graph, [Vertex|Visited]). + +dfs_neighbors([], _, _). +dfs_neighbors([Neighbor|Neighbors], Graph, Visited) :- + dfs_vertex(Neighbor, Graph, Visited), + dfs_neighbors(Neighbors, Graph, Visited). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +dfs_graph_acc(Vertex, Graph) :- dfs_graph(Vertex, Graph). +% + +% 24. Perform a Breadth-First Search on a Graph +% # Normal Recursive +% prolog +bfs_graph(Vertex, Graph) :- + bfs([Vertex], Graph, [Vertex]). + +bfs([], _, _). +bfs([Vertex|Vertices], Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited), + append(Vertices, NewNeighbors, NewVertices), + bfs(NewVertices, Graph, NewVisited). + +filter_unvisited([], Visited, [], Visited). +filter_unvisited([Neighbor|Neighbors], Visited, NewNeighbors, NewVisited) :- + (member(Neighbor, Visited) -> + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited); + filter_unvisited(Neighbors, [Neighbor|Visited], NewNeighbors, [Neighbor|NewVisited]) + ). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +bfs_graph_acc(Vertex, Graph) :- bfs_graph(Vertex, Graph). +% + +% 25. Check if a Graph is Connected +% # Normal Recursive +% prolog +is_connected(Graph) :- + Graph = [Vertex-_|_], + dfs_graph(Vertex, Graph), + \+ (member(OtherVertex-_, Graph), \+ member(OtherVertex, Visited)), !. +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +is_connected_acc(Graph) :- is_connected(Graph). +% + +% 26. Find the Shortest Path between Two Nodes in a Graph +% # Normal Recursive +% prolog +shortest_path(Start, End, Graph, Path) :- + shortest_path([Start], End, Graph, [Start], Path). + +shortest_path(_, End, _, Visited, ReversePath) :- + reverse(ReversePath, [End|_]), !. +shortest_path(Vertices, End, Graph, Visited, Path) :- + adjacent_unvisited(Vertices, Graph, Visited, Adjacent), + append(Visited, Adjacent, NewVisited), + append(Vertices, Adjacent, NewVertices), + shortest_path(NewVertices, End, Graph, NewVisited, Path). +% + +% # With Accumulator +% prolog +% The visited list and the list of vertices to explore act as accumulators. +shortest_path_acc(Start, End, Graph, Path) :- shortest_path(Start, End, Graph, Path). +% + +% 27. Check if a String is a Palindrome +% # Normal Recursive +% prolog +is_string_palindrome(Str) :- string_chars(Str, Chars), is_palindrome(Chars). +% + +% # With Accumulator +% prolog +is_string_pal + +indrome_acc(Str) :- string_chars(Str, Chars), is_palindrome_acc(Chars, []). +% + +% 28. Compute the Edit Distance between Two Strings +% # Normal Recursive +% prolog +edit_distance([], [], 0). +edit_distance([_|T1], [], D) :- + edit_distance(T1, [], D1), + D is D1 + 1. +edit_distance([], [_|T2], D) :- + edit_distance([], T2, D1), + D is D1 + 1. +edit_distance([H1|T1], [H2|T2], D) :- + edit_distance(T1, T2, D1), + D is D1 + (H1 \= H2). +% + +% # With Accumulator +% prolog +edit_distance_acc(S1, S2, D) :- edit_distance_acc(S1, S2, 0, D). + +edit_distance_acc([], [], Acc, Acc). +edit_distance_acc([_|T1], [], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc(T1, [], NewAcc, D). +edit_distance_acc([], [_|T2], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc([], T2, NewAcc, D). +edit_distance_acc([H1|T1], [H2|T2], Acc, D) :- + NewAcc is Acc + (H1 \= H2), + edit_distance_acc(T1, T2, NewAcc, D). +% + +% 29. Find the Longest Common Subsequence of Two Strings +% # Normal Recursive +% prolog +lcs([], _, []). +lcs(_, [], []). +lcs([H|T1], [H|T2], [H|Lcs]) :- lcs(T1, T2, Lcs), !. +lcs(S1, [_|T2], Lcs) :- lcs(S1, T2, Lcs). +lcs([_|T1], S2, Lcs) :- lcs(T1, S2, Lcs). +% + +% # With Accumulator +% prolog +lcs_acc(S1, S2, Lcs) :- lcs_acc(S1, S2, [], Lcs). + +lcs_acc([], _, Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc(_, [], Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc([H|T1], [H|T2], Acc, Lcs) :- lcs_acc(T1, T2, [H|Acc], Lcs). +lcs_acc(S1, [_|T2], Acc, Lcs) :- lcs_acc(S1, T2, Acc, Lcs). +lcs_acc([_|T1], S2, Acc, Lcs) :- lcs_acc(T1, S2, Acc, Lcs). +% + +% 30. Find the Longest Common Substring of Two Strings +% # Normal Recursive +% prolog +longest_common_substring(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string(Subs, Lcs). + +substring(Str, Sub) :- + append(_, Rest, Str), + append(Sub, _, Rest). + +longest_string([H|T], Longest) :- + longest_string(T, H, Longest). + +longest_string([], Acc, Acc). +longest_string([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string(T, H, Longest); longest_string(T, Acc, Longest)). +% + +% # With Accumulator +% prolog +longest_common_substring_acc(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string_acc(Subs, [], Lcs). + +longest_string_acc([], Acc, Acc). +longest_string_acc([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string_acc(T, H, Longest); longest_string_acc(T, Acc, Longest)). +% + + + diff --git a/metta_vspace/pyswip-12-15/metta_utils.pl b/metta_vspace/pyswip-12-15/metta_utils.pl new file mode 100755 index 00000000..fae8da81 --- /dev/null +++ b/metta_vspace/pyswip-12-15/metta_utils.pl @@ -0,0 +1,2511 @@ + +:- set_prolog_flag(verbose_autoload, false). +:- set_prolog_flag(verbose, silent). +:- set_prolog_flag(verbose_load, silent). +:- ensure_loaded(library(logicmoo_utils)). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +:- if(exists_source(library(logicmoo_utils))). +:- ensure_loaded(library(logicmoo_utils)). +:- endif. +:- if(exists_source(library(dictoo))). +:- ensure_loaded(library(dictoo)). +:- endif. + + +:- export(plain_var/1). +plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). +catch_nolog(G):- ignore(catch(notrace(G),E,once(true;nop(u_dmsg(E=G))))). +catch_log(G):- ignore(catch(notrace(G),E,((u_dmsg(E=G),ugtrace(G))))). +% catch_log(G):- ignore(catch(notrace(G),E,((writeln(E=G),catch_nolog(ds))))). + +get_user_error(UE):- stream_property(UE,file_no(2)),!. +get_user_error(UE):- stream_property(UE,alias(user_error)),!. + +ufmt(G):- fbug(G)->true;ufmt0(G). +ufmt0(G):- fmt(G)->true;writeln(G). +u_dmsg(G):- is_list(G),!,my_maplist(u_dmsg,G). +u_dmsg(M):- get_user_error(UE), \+ current_predicate(with_toplevel_pp/2),!, with_output_to(UE,ufmt(M)). +u_dmsg(M):- get_user_error(UE),!, with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))). +u_dmsg(M):- get_user_error(UE), stream_property(UO,file_no(1)), current_output(CO),!, + (UO==CO -> dmsg(M) ; + (with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))), with_output_to(CO,pp(M)))). +u_dmsg(G):-ufmt(G),!. + + +:- multifile(is_cgi/0). +:- dynamic(is_cgi/0). +:- multifile(arc_html/0). +:- dynamic(arc_html/0). + + +logicmoo_use_swish:- + set_prolog_flag(use_arc_swish,true), + ld_logicmoo_webui,call(call,webui_start_swish_and_clio), + http_handler('/swish', http_redirect(moved, '/swish/'), []). + +arc_user(Nonvar):- nonvar(Nonvar),!,arc_user(Var),!,Nonvar=Var. +arc_user(main):- main_thread, !. %\+ if_thread_main(fail),!. +arc_user(ID):- catch((pengine:pengine_user(ID)),_,fail),!. +arc_user(ID):- catch((xlisting_web:is_cgi_stream,xlisting_web:find_http_session(User),http_session:session_data(User,username(ID))),_,fail),!. +arc_user(ID):- catch((is_cgi, (xlisting_web:find_http_session(ID))),_,fail),!. +arc_user(ID):- is_cgi,!,ID=web_user. +arc_user(ID):- thread_self(ID). + +:- dynamic(arc_user_prop/3). + +%luser_setval(N,V):- nb_setval(N,V),!. +luser_setval(N,V):- arc_user(ID),luser_setval(ID,N,V),!. +luser_setval(ID,N,V):- \+ (arc_sensical_term(N),arc_sensical_term(V)), + warn_skip(not_arc_sensical_term(luser_setval(ID,N,V))). +luser_setval(ID,N,V):- + (atom(N)->nb_setval(N,V);true), + retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). + + +luser_unsetval(N):- ignore(nb_delete(N)), arc_user(ID),luser_unsetval(ID,N),!. +luser_unsetval(ID,N):- retractall(arc_user_prop(ID,N,_)). + +set_luser_default(N,V):- luser_setval(global,N,V). +luser_default(N,V):- var(V),!,luser_getval(N,V). +luser_default(N,V):- set_luser_default(N,V). + +luser_linkval(N,V):- arc_user(ID),luser_linkval(ID,N,V),!. +luser_linkval(ID,N,V):- \+ var(V), \+ (arc_sensical_term(N),arc_sensical_term(V)), + trace, + warn_skip(not_arc_sensical_term(luser_linkval(ID,N,V))). +luser_linkval(ID,N,V):- + (atom(N)->nb_linkval(N,V);true), + retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). + +arc_sensical_term(O):- nonvar(O), O\==[], O\=='', O \= (_ - _), O\==end_of_file. +arc_sensical_term(V,O):- arc_sensical_term(V), !, O=V. + +%arc_option(grid_size_only):- !,fail. +arc_option(O):- luser_getval(O,t). +if_arc_option(O,G):- (arc_option(O)->must_det_ll(G); true). + +with_luser(N,V,Goal):- + (luser_getval(N,OV);OV=[]), + setup_call_cleanup( + luser_setval(N,V), + once(Goal), + luser_setval(N,OV)). + +%luser_getval(N,V):- nb_current(N,VVV),arc_sensical_term(VVV,VV),!,V=VV. +% caches the valuetemp on this thread +luser_getval(N,V):- luser_getval_0(N,VV),VV=V,arc_sensical_term(V),!. + +luser_getval_0(arc_user,V):- arc_user(V). +luser_getval_0(N,V):- luser_getval_1(N,V). + +luser_getval_1(N,V):- luser_getval_2(N,V). +luser_getval_1(N,V):- luser_getval_3(N,V), \+ (luser_getval_2(N,VV), nop(VV\=V)). +luser_getval_1(N,V):- get_luser_default(N,V), \+ (luser_getval_3(N,VV), nop(VV\=V)), \+ (luser_getval_2(N,VV), nop(VV\=V)). + +%luser_getval_0(N,V):- luser_getval_2(N,V), \+ luser_getval_1(N,_). +%luser_getval_0(N,V):- luser_getval_3(N,V), \+ luser_getval_2(N,_), \+ luser_getval_1(N,_). +%luser_getval_3(N,V):- is_cgi, current_predicate(get_param_req/2),get_param_req(N,M),url_decode_term(M,V). +luser_getval_2(N,V):- \+ main_thread, atom(N), httpd_wrapper:http_current_request(Request), member(search(List),Request),member(N=VV,List),url_decode_term(VV,V),arc_sensical_term(V),!. +luser_getval_2(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. + +luser_getval_3(N,V):- arc_user(ID), arc_user_prop(ID,N,V). +luser_getval_3(_,_):- \+ is_cgi, !, fail. +luser_getval_3(N,V):- \+ main_thread, atom(N), current_predicate(get_param_sess/2),get_param_sess(N,M),url_decode_term(M,V),arc_sensical_term(V). +%luser_getval_3(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. + + +get_luser_default(N,V):- arc_user_prop(global,N,VV),VV=V,arc_sensical_term(V),!. +get_luser_default(N,V):- atom(N), current_prolog_flag(N,VV),VV=V,arc_sensical_term(V),!. +%luser_getval(ID,N,V):- thread_self(ID),nb_current(N,V),!. +%luser_getval(ID,N,V):- !, ((arc_user_prop(ID,N,V);nb_current(N,V))*->true;arc_user_prop(global,N,V)). + + +ansi_main:- thread_self(main),nop(is_cgi),!. + +main_thread:- thread_self(main),!. +if_thread_main(G):- main_thread->call(G);true. + + + + +:- if(\+ current_predicate(wdmsg/1)). +%wdmsg(P):- format(user_error,'~N~p~n',[P]). +:- endif. + + + +substM(T, F, R, R):- T==F,!. +substM(T, _, _, R):- \+ compound(T),!,R=T. +substM([H1|T1], F, R, [H2|T2]) :- !, substM(H1, F, R, H2), substM(T1, F, R, T2). +substM(C1, F, R, C2) :- C1 =.. [Fn|A1], substM_l(A1,F,R,A2),!, C2 =.. [Fn|A2]. +substM_l([], _, _, []). substM_l([H1|T1], F, R, [H2|T2]) :- substM(H1, F, R, H2), substM_l(T1, F, R, T2). + + +pp_m(Cl):- write_src(Cl),!. +pp_m(C,Cl):- color_g_mesg(C,write_src(Cl)),!. +% notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). +pp_q(Cl):- + notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). + + +ncatch(G,E,F):- catch(G,E,F). +mcatch(G,E,F):- catch(G,E,F). +%mcatch(G,E,F):- catch(G,E,(wdmsg(G=E),catch(bt,_,fail),wdmsg(G=E),ignore(call(F)),throw(E))). +%ncatch(G,E,F):- catch(G,E,(wdmsg(G=E),catch(bt,_,fail),wdmsg(G=E),call(G))). +%ncatch(G,E,(F)). + + +:- if( \+ current_predicate(if_t/2)). +:- meta_predicate(if_t(0,0)). +if_t(IF, THEN) :- call(call,ignore((((IF,THEN))))). +:- endif. + +:- if( \+ current_predicate(must_ll/1)). +:- meta_predicate(must_ll(0)). +must_ll(G):- md(call,G)*->true;throw(not_at_least_once(G)). +:- endif. + +:- if( \+ current_predicate(at_least_once/1)). +:- meta_predicate(at_least_once(0)). +at_least_once(G):- call(G)*->true;throw(not_at_least_once(G)). +:- endif. + +%wraps_each(must_ll,call). +wraps_each(must_det_ll,once). +md_like(MD):- wraps_each(MD,_). + +remove_must_det(_):- !,fail. +%remove_must_det(MD):- !. +%remove_must_det(MD):- nb_current(remove_must_det(MD),TF),!,TF==true. +%remove_must_det(MD):- \+ false. + +%remove_mds(MD,G,GGG):- compound(G), G = must_det_ll(GG),!,expand_goal(GG,GGG),!. +%remove_mds(MD,G,GGG):- compound(G), G = must_det_l(GG),!,expand_goal(GG,GGG),!. +remove_mds(MD,GG,GO):- sub_term(G,GG),compound(G),compound_name_arg(G,MD,GGGG),subst001(GG,G,GGGG,GGG),remove_mds(MD,GGG,GO). +remove_mds(_,GG,GG). +%remove_mds(MD,G,GG):- compound(G), G = ..[MD,AA], compound(G),removed_term(G,GO),expand_goal(GO,GG). + +%never_rrtrace:-!. +never_rrtrace:- nb_current(cant_rrtrace,t),!,notrace. +never_rrtrace:- is_cgi,notrace. + + +%itrace:- !. +%itrace:- \+ current_prolog_flag(debug,true),!. +itrace:- if_thread_main(trace),!. +ibreak:- if_thread_main(((trace,break))). +%recolor(_,_):- ibreak. + +%tc_arg(N,C,E):- compound(C),!,arg(N,C,E). +tc_arg(N,C,E):- catch(arg(N,C,E),Err, + /*unrepress_output*/((bt,wdmsg(tc_arg(N,C,E)=Err),((tracing->true;trace),break,arg(N,C,E))))). + + + + + + +compound_name_arg(G,MD,Goal):- var(G),!,atom(MD),G=..[MD,Goal]. +compound_name_arg(G,MD,Goal):- compound(G),!, compound_name_arguments(G,MD,[Goal]). + + +:- multifile(user:message_hook/3). +:- dynamic(user:message_hook/3). +%user:message_hook(Term, Kind, Lines):- error==Kind, itrace,wdmsg(user:message_hook(Term, Kind, Lines)),trace,fail. +user:message_hook(Term, Kind, Lines):- error==Kind, wdmsg(user:message_hook(Term, Kind, Lines)),fail. + +:- meta_predicate(must_det_ll(0)). +:- meta_predicate(must_det_ll1(1,0)). +:- meta_predicate(md_failed(1,0)). +:- meta_predicate(must_not_error(0)). +%:- meta_predicate(must_det_l(0)). + +%:- no_xdbg_flags. +:- meta_predicate(wno_must(0)). + +wno_must(G):- locally(nb_setval(no_must_det_ll,t),locally(nb_setval(cant_rrtrace,t),call(G))). + +md_maplist(_MD,_,[]):-!. +md_maplist(MD,P1,[H|T]):- call(MD,call(P1,H)), md_maplist(MD,P1,T). + +md_maplist(_MD,_,[],[]):-!. +md_maplist(MD,P2,[HA|TA],[HB|TB]):- call(MD,call(P2,HA,HB)), md_maplist(MD,P2,TA,TB). + +md_maplist(_MD,_,[],[],[]):-!. +md_maplist(MD,P3,[HA|TA],[HB|TB],[HC|TC]):- call(MD,call(P3,HA,HB,HC)), md_maplist(MD,P3,TA,TB,TC). + +%must_det_ll(G):- !, once((/*notrace*/(G)*->true;md_failed(P1,G))). + +%:- if( \+ current_predicate(must_det_ll/1)). +must_det_ll(X):- tracing,!,once(X). +must_det_ll(X):- md(once,X). +%:- endif. + +md(P1,G):- tracing,!, call(P1,G). % once((call(G)*->true;md_failed(P1,G))). +md(P1,G):- remove_must_det(MD), wraps_each(MD,P1),!,call(G). +md(P1,G):- never_rrtrace,!, call(P1,G). +md(P1,G):- /*notrace*/(arc_html),!, ignore(/*notrace*/(call(P1,G))),!. +%md(P1,X):- !,must_not_error(X). +md(P1,(X,Goal)):- is_trace_call(X),!,call((itrace,call(P1,Goal))). +md(_, X):- is_trace_call(X),!,itrace. +md(P1, X):- nb_current(no_must_det_ll,t),!,call(P1,X). +md(P1,X):- \+ callable(X), !, throw(md_not_callable(P1,X)). +md(P1,(A*->X;Y)):- !,(must_not_error(A)*->md(P1,X);md(P1,Y)). +md(P1,(A->X;Y)):- !,(must_not_error(A)->md(P1,X);md(P1,Y)). +md(P1,(X,Cut)):- (Cut==(!)),md(P1,X),!. +md(MD,maplist(P1,List)):- !, call(MD,md_maplist(MD,P1,List)). +md(MD,maplist(P2,ListA,ListB)):- !, call(MD,md_maplist(MD,P2,ListA,ListB)). +md(MD,maplist(P3,ListA,ListB,ListC)):- !, call(MD,md_maplist(MD,P3,ListA,ListB,ListC)). +md(P1,(X,Cut,Y)):- (Cut==(!)), !, (md(P1,X),!,md(P1,Y)). +md(P1,(X,Y)):- !, (md(P1,X),md(P1,Y)). +%md(P1,X):- /*notrace*/(ncatch(X,_,fail)),!. +%md(P1,X):- conjuncts_to_list(X,List),List\=[_],!,maplist(must_det_ll,List). +md(_,must_det_ll(X)):- !, must_det_ll(X). +md(_,grid_call(P2,I,O)):- !, must_grid_call(P2,I,O). +%md(P1,call(P2,I,O)):- !, must_grid_call(P2,I,O). +%md(P1,(X,Y,Z)):- !, (md(P1,X)->md(P1,Y)->md(P1,Z)). +%md(P1,(X,Y)):- !, (md(P1,X)->md(P1,Y)). +%md(P1,if_t(X,Y)):- !, if_t(must_not_error(X),md(P1,Y)). +md(P1,forall(X,Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). +md(P1,\+ (X, \+ Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). + +md(P1,(X;Y)):- !, ((must_not_error(X);must_not_error(Y))->true;md_failed(P1,X;Y)). +md(P1,\+ (X)):- !, (\+ must_not_error(X) -> true ; md_failed(P1,\+ X)). +%md(P1,(M:Y)):- nonvar(M), !, M:md(P1,Y). +md(P1,X):- + ncatch(must_det_ll1(P1,X), + md_failed(P1,G,N), % <- ExceptionTerm + % bubble up and start running + ((M is N -1, M>0)->throw(md_failed(P1,G,M));(ugtrace(X),throw('$aborted')))),!. +%must_det_ll(X):- must_det_ll1(P1,X),!. + +must_det_ll1(P1,X):- tracing,!,must_not_error(call(P1,X)),!. +must_det_ll1(P1,once(A)):- !, once(md(P1,A)). +must_det_ll1(P1,X):- + strip_module(X,M,P),functor(P,F,A),setup_call_cleanup(nop(trace(M:F/A,+fail)),(must_not_error(call(P1,X))*->true;md_failed(P1,X)), + nop(trace(M:F/A,-fail))),!. + +ugtrace(_):- option_value(testing,true),!, halt(5). +ugtrace(G):- rtrace(G). +%ugtrace(G):- ggtrace(G). + +%must_not_error(G):- must(once(G)). + +must_not_error(G):- (tracing;never_rrtrace),!,call(G). +must_not_error(G):- notrace(is_cgi),!, ncatch((G),E,((u_dmsg(E=G)))). +%must_not_error(X):- is_guitracer,!, call(X). +%must_not_error(G):- !, call(G). +must_not_error(X):- !,ncatch(X,E,(wdmsg(E=X),ugtrace(X))). +must_not_error(X):- ncatch(X,E,(rethrow_abort(E);(/*arcST,*/writeq(E=X),pp(etrace=X), + trace, + rrtrace(visible_rtrace([-all,+exception]),X)))). + +always_rethrow(E):- never_rrtrace,!,throw(E). +always_rethrow('$aborted'). +always_rethrow(md_failed(_,_,_)). + +%catch_non_abort(Goal):- cant_rrtrace(Goal). +catch_non_abort(Goal):- catch(cant_rrtrace(Goal),E,rethrow_abort(E)),!. +rethrow_abort(E):- format(user_error,'~N~q~n',[catch_non_abort_or_abort(E)]),fail. +%rethrow_abort(time_limit_exceeded):-!. +rethrow_abort('$aborted'):- !, throw('$aborted'),!,forall(between(1,700,_),sleep(0.01)),writeln(timeout),!,fail. +rethrow_abort(E):- ds,!,format(user_error,'~N~q~n',[catch_non_abort(E)]),!. + +cant_rrtrace(Goal):- never_rrtrace,!,call(Goal). +cant_rrtrace(Goal):- setup_call_cleanup(cant_rrtrace,Goal,can_rrtrace). + +main_debug:- main_thread,current_prolog_flag(debug,true). +cant_rrtrace:- nb_setval(cant_rrtrace,t). +can_rrtrace:- nb_setval(cant_rrtrace,f). +%md_failed(P1,X):- predicate_property(X,number_of_clauses(1)),clause(X,(A,B,C,Body)), (B\==!),!,must_det_ll(A),must_det_ll((B,C,Body)). +md_failed(P1,G):- never_rrtrace,!,notrace,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). +md_failed(_P1,_G):- option_value(testing,true),!,halt(6). +md_failed(_,_):- never_rrtrace,!,fail. +md_failed(P1,G):- tracing,/*notrace*/(u_dmsg(md_failed(P1,G))),!,fail. +md_failed(P1,G):- main_debug,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). +md_failed(P1,G):- is_cgi,!, u_dmsg(arc_html(md_failed(P1,G))). +md_failed(P1,X):- notrace,is_guitracer,u_dmsg(failed(X))/*,arcST*/,nortrace,atrace, call(P1,X). +md_failed(P1,X):- u_dmsg(failed(P1,X))/*,arcST*/,nortrace,atrace, + trace,visible_rtrace([-all,+fail,+call,+exception],X). +% must_det_ll(X):- must_det_ll(X),!. + +:- meta_predicate(rrtrace(0)). +rrtrace(X):- rrtrace(etrace,X). + +is_guitracer:- getenv('DISPLAY',_), current_prolog_flag(gui_tracer,true). +:- meta_predicate(rrtrace(1,0)). +rrtrace(P1,X):- never_rrtrace,!,nop((u_dmsg(cant_rrtrace(P1,X)))),!,fail. +rrtrace(P1,G):- is_cgi,!, u_dmsg(arc_html(rrtrace(P1,G))),call(P1,G). +rrtrace(P1,X):- notrace, \+ is_guitracer,!,nortrace, /*arcST, sleep(0.5), trace,*/ + (notrace(\+ current_prolog_flag(gui_tracer,true)) -> call(P1,X); (itrace,call(P1,X))). +%rrtrace(_,X):- is_guitracer,!,notrace,nortrace,ncatch(call(call,ugtrace),_,true),atrace,call(X). +rrtrace(P1,X):- itrace,!, call(P1,X). + +:- meta_predicate(arc_wote(0)). +arc_wote(G):- with_pp(ansi,wote(G)). +arcST:- itrace,arc_wote(bts),itrace. +atrace:- arc_wote(bts). +%atrace:- ignore((stream_property(X,file_no(2)), with_output_to(X,dumpST))),!. + +:- meta_predicate(odd_failure(0)). +odd_failure(G):- never_rrtrace,!,call(G). +odd_failure(G):- wno_must(G)*->true;fail_odd_failure(G). + +:- meta_predicate(fail_odd_failure(0)). +fail_odd_failure(G):- u_dmsg(odd_failure(G)),rtrace(G), fail. +%fail_odd_failure(G):- call(G)*->true;(u_dmsg(odd_failure(G)),fail,rrtrace(G)). + + +bts:- + ensure_loaded(library(prolog_stack)), + prolog_stack:export(prolog_stack:get_prolog_backtrace_lc/3), + use_module(library(prolog_stack),[print_prolog_backtrace/2,get_prolog_backtrace_lc/3]), + /*notrace*/(prolog_stack:call(call,get_prolog_backtrace_lc,8000, Stack, [goal_depth(600)])), + stream_property(S,file_no(1)), prolog_stack:print_prolog_backtrace(S, Stack), + ignore((fail, current_output(Out), \+ stream_property(Out,file_no(1)), print_prolog_backtrace(Out, Stack))),!. + +my_assertion(G):- my_assertion(call(G),G). + +my_assertion(_,G):- call(G),!. +my_assertion(Why,G):- u_dmsg(my_assertion(Why,G)),writeq(Why=goal(G)),nl,!,ibreak. + +must_be_free(Free):- plain_var(Free),!. +must_be_free(Free):- \+ nonvar_or_ci(Free),!. +must_be_free(Nonfree):- arcST,u_dmsg(must_be_free(Nonfree)), + ignore((attvar(Nonfree),get_attrs(Nonfree,ATTS),pp(ATTS))),ibreak,fail. + +must_be_nonvar(Nonvar):- nonvar_or_ci(Nonvar),!. +must_be_nonvar(IsVar):- arcST,u_dmsg(must_be_nonvar(IsVar)),ibreak,fail. + + +% goal_expansion(must_det_l(G),I,must_det_ll(G),O):- nonvar(I),source_location(_,_), nonvar(G),I=O. + +%goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), compound(G), remove_mds(MD,G,GG),I=O. + +%:- system:ensure_loaded(library(pfc_lib)). +%:- expects_dialect(pfc). +/* +goal_expansion(Goal,Out):- compound(Goal), tc_arg(N1,Goal,E), + compound(E), E = set(Obj,Member), setarg(N1,Goal,Var), + expand_goal((Goal,b_set_dict(Member,Obj,Var)),Out). +*/ +get_setarg_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_setarg_p2(P3,E,Cmpd,SA). +get_setarg_p2(P3,E,Cmpd,SA):- arg(N1,Cmpd,E), SA=call(P3,N1,Cmpd). +get_setarg_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_setarg_p1(P3,E,Arg,SA). + +my_b_set_dict(Member,Obj,Var):- set_omemberh(b,Member,Obj,Var). +%nb_set_dict(Member,Obj,Var), +set_omemberh(_,Member,Obj,Var):- !, arc_setval(Obj,Member,Var). +%nb_link_dict(Member,Obj,Var), +%set_omemberh(nb,Member,Obj,Var):- !, nb_set_dict(Member,Obj,Var). +%set_omemberh(link,Member,Obj,Var):- !, nb_link_dict(Member,Obj,Var). +%set_omemberh(How,Member,Obj,Var):- call(call,How,Member,Obj,Var),!. + +set_omember(Member,Obj,Var):- set_omember(b,Member,Obj,Var). + +set_omember(How,Member,Obj,Var):- + must_be_nonvar(Member), must_be_nonvar(Obj), must_be_nonvar(How), !, + set_omemberh(How,Member,Obj,Var),!. + + + +get_kov(K,O,V):- dictoo:is_dot_hook(user,O,K,V),!,o_m_v(O,K,V). +get_kov(K,O,V):- ((get_kov1(K,O,V)*->true;(get_kov1(props,O,VV),get_kov1(K,VV,V)))). + +get_kov1(K,O,V):- (is_hooked_obj(O),o_m_v(O,K,V))*->true;get_kov2(K,O,V). +% (get_kov(Prop,VM,Value) -> true ; (get_kov(props,VM,Hashmap),nonvar(Hashmap),must_not_error(nb_get_value(Hashmap,Prop,ValueOOV)),get_oov_value(ValueOOV,Value))). +get_kov2(K,O,V):- is_dict(O),!,get_dict(K,O,OOV),get_oov_value(OOV,V). +get_kov2(K,O,V):- nonvar(K),is_rbtree(O),!,rb_lookup(K,V,O). +get_kov2(K,O,V):- is_rbtree(O),!,rb_in(K,V,OOV),get_oov_value(OOV,V). +%get_kov(K,O,V):- is_rbtree(O),!,nb_rb_get_node(K,O,Node),nb_rb_node_value(Node,V). + +get_oov_value(ValueOOV,Value):- compound(ValueOOV),ValueOOV=oov(Value),!. +get_oov_value(Value,Value). + + +term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,O),I\=@=O,!. +term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,M),I\=@=M,!,term_expansion_setter(M,O). +term_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). + +term_expansion_setter((Head:-Body),Out):- + get_setarg_p1(setarg,I,Head,P1), is_setter_syntax(I,Obj,Member,Var,How), + call(P1,Var), + BodyCode = (Body, set_omember(How,Member,Obj,Var)), + % goal_expansion_setter(BodyCode,Goal), + expand_term((Head:- BodyCode),Out),!. + +%term_expansion_setter((Head:-Body),(Head:-GBody)):- goal_expansion_setter(Body,GBody),!. + +:- export(term_expansion_setter/2). +:- system:import(term_expansion_setter/2). + +%goal_expansion(Goal,'.'(Training, Objs, Obj)):- Goal = ('.'(Training, Objs, A), Obj = V), var(Obj). + +is_setter_syntax(I,_Obj,_Member,_Var,_):- \+ compound(I),!,fail. +is_setter_syntax(set(Obj,Member),Obj,Member,_Var,b). +is_setter_syntax(gset(Obj,Member),Obj,Member,_Var,nb). +is_setter_syntax(hset(How,Obj,Member),Obj,Member,_Var,How). +is_setter_syntax(set(ObjMember),Obj,Member,_Var,b):- obj_member_syntax(ObjMember,Obj,Member). +is_setter_syntax(gset(ObjMember),Obj,Member,_Var,nb):- obj_member_syntax(ObjMember,Obj,Member). +is_setter_syntax(hset(How,ObjMember),Obj,Member,_Var,How):- obj_member_syntax(ObjMember,Obj,Member). + +obj_member_syntax(ObjMember,Obj,Member):-compound(ObjMember), compound_name_arguments(ObjMember,'.',[Obj,Member]),!. + +maybe_expand_md(_MD,I,_):- \+ compound(I),!,fail. +%maybe_expand_md(MD,I,_):- compound(I),!,fail. % THIS DISABLES +% THIS DISABLES +%maybe_expand_md(MD,must_det_ll(GoalL),GoalL):-!. +maybe_expand_md(MD,MDGoal,GoalLO):- compound_name_arg(MDGoal,MD,Goal),!, expand_md(MD,Goal,GoalLO). +maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, + expand_md(MD,GoalL,GoalLO). +maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, + expand_md(MD,GoalL,GoalLO). +maybe_expand_md(MD,I,O):- sub_term(C,I),compound(C), compound_name_arg(C,MD,Goal), + compound(Goal),Goal=(_,_), + once((expand_md(MD,Goal,GoalO),substM(I,C,GoalO,O))),I\=@=O. + + +%maybe_expand_md(MD,I,O):- sub_term(S,I),compound(S),S=must_det_ll(G), +% once(expand_md(MD,S,M)),M\=S, + + + +expand_md(_MD,Nil,true):- Nil==[],!. +expand_md(_MD,Var,Var):- \+ callable(Var),!. +expand_md(MD,[A|B],(AA,BB)):- assertion(callable(A)), assertion(is_list(B)), !, + expand_md1(MD,A,AA), expand_md(MD,B,BB). +expand_md(MD,A,AA):- !, expand_md1(MD,A,AA). + +prevents_expansion(A):- is_trace_call(A). +is_trace_call(A):- A == trace. +is_trace_call(A):- A == itrace. + +skip_expansion(A):- var(A),!,fail. +skip_expansion(!). +skip_expansion(false). +skip_expansion(true). +skip_expansion(C):- compound(C),functor(C,F,A),skip_fa_expansion(F,A). +skip_fa_expansion(once,1). +skip_fa_expansion(call,_). +skip_fa_expansion(if_t,2). + +expand_md1(_MD,Var,Var):- \+ callable(Var),!. +expand_md1(_MD,Cut,Cut):- skip_expansion(Cut),!. +expand_md1(MD,MDAB, AABB):- compound(MDAB), compound_name_arg(MDAB,MD,AB),!, expand_md(MD,AB,AABB). +expand_md1(MD,maplist(P1,A),md_maplist(MD,P1,A)):-!. +expand_md1(MD,maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. +expand_md1(MD,maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. +expand_md1(MD,my_maplist(P1,A),md_maplist(MD,P1,A)):-!. +expand_md1(MD,my_maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. +expand_md1(MD,my_maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. +%expand_md1(MD,Goal,O):- \+ compound(Goal), !,O = must_det_ll(Goal). +%expand_md1(MD,(A,B),((A,B))):- remove_must_det(MD), prevents_expansion(A),!. +%expand_md1(MD,(A,B),must_det_ll((A,B))):- prevents_expansion(A),!. +expand_md1(MD,(A,B),(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). +expand_md1(MD,(C*->A;B),(CC*->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). +expand_md1(MD,(C->A;B),(CC->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). +expand_md1(MD,(C;B),(CC;BB)):- !, expand_md(MD,B,BB), expand_must_not_error(C,CC). + +expand_md1(MD,locally(C,A),locally(C,AA)):- !, expand_md(MD,A,AA). + +expand_md1(MD,call_cleanup(A,B),call_cleanup(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). +expand_md1(MD,setup_call_cleanup(C,A,B),setup_call_cleanup(CC,AA,BB)):- !, + expand_md(MD,C,CC),expand_md(MD,A,AA), expand_md(MD,B,BB). + +expand_md1(MD,M:P, M:AABB):-!,expand_md(MD,P, AABB). + +expand_md1(MD,P, AABB) :- predicate_property(P,(meta_predicate( MP ))), + strip_module(P,_,SP),strip_module(MP,_,SMP), kaggle_arc_1_pred(_,SP), + \+ skippable_built_in(P), + SP=..[F|Args],SMP=..[F|Margs],!, + maplist(expand_meta_predicate_arg(MD),Margs,Args,EArgs), + AABB=..[F|EArgs]. + +expand_md1(MD, A, MDAA):- \+ remove_must_det(MD), !, expand_goal(A,AA),!,compound_name_arg(MDAA,MD,AA). +expand_md1(_MD, A, AA):- expand_goal(A,AA),!. + +expand_must_not_error(C,C):- remove_must_det(must_not_error),!. +expand_must_not_error(C,CC):- \+ predicate_property(C,meta_predicate(_)),!, CC = must_not_error(C),!. +expand_must_not_error(C,CC):- expand_md(must_not_error, C, CC). + +kaggle_arc_1_pred(M,P):- + predicate_property(M:P,file(F)), + \+ predicate_property(M:P,imported_from(_)), + \+ \+ atom_contains(F,'arc_'), + \+ atom_contains(F,'_pfc'), + \+ atom_contains(F,'_afc'), + % \+ atom_contains(F,'_ui_'), + true. + +%meta_builtin(P):- var(P),meta_builtin(P). +%meta_builtin(P):- predicate_property(P,interpreted),predicate_property(P,static). +skippable_built_in(MP):- strip_module(MP,_,P), predicate_property(system:P,built_in), + once(predicate_property(system:P,iso);predicate_property(system:P,notrace)). +%meta_builtin(P):- predicate_property(P,/*notrace*/), \+ predicate_property(P,nodebug). + +expand_meta_predicate_arg(_MD,'?',A,A):-!. +expand_meta_predicate_arg(_MD,'+',A,A):-!. +expand_meta_predicate_arg(_MD,'-',A,A):-!. +expand_meta_predicate_arg(MD, ':',A,AA):- !,expand_md1(MD,A,AA). +expand_meta_predicate_arg(MD, 0,A,AA):- !,expand_md1(MD,A,AA). +%expand_meta_predicate_arg(MD,*,A,AA):- !,expand_md1(MD,A,AA). +expand_meta_predicate_arg(_MD,_,A,A). + +goal_expansion_getter(Goal,O):- \+ compound(Goal), !,O = Goal. +goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. +goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_getter(M,O). +goal_expansion_getter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). +goal_expansion_getter(Goal,Out):- + compound_name_arguments(Goal,F,Args), + maplist(goal_expansion_getter,Args,ArgsOut), + compound_name_arguments(Out,F,ArgsOut). + +:- export(goal_expansion_getter/2). +:- system:import(goal_expansion_getter/2). + + +goal_expansion_setter(Goal,_):- \+ compound(Goal), !, fail. + + +goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. +goal_expansion_setter(G,GO):- remove_must_det(MD), !,remove_mds(MD,G,GG),goal_expansion_setter(GG,GO). +%goal_expansion_setter(GG,GO):- remove_must_det(MD), sub_term(G,GG),compound(G),G = must_det_ll(GGGG),subst001(GG,G,GGGG,GGG),!,goal_expansion_setter(GGG,GO). +%goal_expansion_setter((G1,G2),(O1,O2)):- !, expand_goal(G1,O1), expand_goal(G2,O2),!. +goal_expansion_setter(set_omember(A,B,C,D),set_omember(A,B,C,D)):-!. +goal_expansion_setter(set_omember(A,B,C),set_omember(b,A,B,C)):-!. +goal_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). +goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_setter(M,O). + + +goal_expansion_setter(Goal,Out):- + predicate_property(Goal,meta_predicate(_)),!,fail, + tc_arg(N1,Goal,P), goal_expansion_setter(P,MOut), + setarg(N1,Goal,MOut), !, expand_goal(Goal, Out). + +goal_expansion_setter(Goal,Out):- + tc_arg(N1,Goal,P), is_setter_syntax(P,Obj,Member,Var,How), + setarg(N1,Goal,Var), !, expand_goal((Goal,set_omember(How,Member,Obj,Var)), Out). + +goal_expansion_setter(Goal,Out):- + get_setarg_p1(setarg,I,Goal,P1), compound(I), compound_name_arguments(I,'.',[ Self, Func, Value]), + call(P1,get_kov(Func,Self,Value)),!, + expand_goal(Goal,Out). + +goal_expansion_setter(Goal,Out):- + get_setarg_p1(setarg,I,Goal,P1), is_setter_syntax(I,Obj,Member,Var,How), + call(P1,Var),!, + expand_goal((Goal,set_omember(How,Member,Obj,Var)),Out). + +:- export(goal_expansion_setter/2). +:- system:import(goal_expansion_setter/2). + + +/* +system:term_expansion((Head:-Goal),I,(Head:-Out),O):- nonvar(I), compound(Goal), + goal_expansion_setter(Goal,Out),Goal\=@=Out,I=O,!, + nop((print(goal_expansion_getter(Goal-->Out)),nl)). +*/ +arc_term_expansion1((system:term_expansion((Head:-Body),I,Out,O):- + nonvar(I), compound(Head), + term_expansion_setter((Head:-Body),Out),(Head:-Body)=In,In\==Out,I=O,!, + nop((print(term_expansion_setter(In-->Out)),nl)))). + + +%system:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, +% ((print(goal_expansion_getter(Goal-->Out)),nl)). + +%user:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, +% ((print(goal_expansion_getter(Goal-->Out)),nl)). + +arc_term_expansion1((goal_expansion(Goal,I,Out,O):- + goal_expansion_setter(Goal,Out),Goal\==Out,I=O,!, + nop((print(goal_expansion_setter(Goal-->Out)),nl)))). + +:- export(arc_term_expansions/1). +arc_term_expansions(H:- (current_prolog_flag(arc_term_expansion, true), B)):- + arc_term_expansion1(H:-B). + +:- export(enable_arc_expansion/0). +enable_arc_expansion:- + forall(arc_term_expansions(Rule), + (strip_module(Rule,M,Rule0), + nop(u_dmsg(asserta_if_new(Rule,M,Rule0))), + asserta_if_new(Rule))), + set_prolog_flag(arc_term_expansion, true). + +:- export(disable_arc_expansion/0). +disable_arc_expansion:- + forall(arc_term_expansions(Rule),forall(retract(Rule),true)), + set_prolog_flag(arc_term_expansion, false). + +:- multifile(goal_expansion/4). +:- dynamic(goal_expansion/4). + +goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), + compound(G), + (remove_must_det(MD)->remove_mds(MD,G,GG);(md_like(MD),maybe_expand_md(MD,G,GG))),I=O. + + + + + + + + + + + +/* +:- export(plain_var/1). +plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). + +my_assertion(G):- call(G),!. +my_assertion(G):- wdmsg(my_assertion(G)),writeq(goal(G)),nl,!,break. +must_be_free(AllNew):- plain_var(AllNew),!. +must_be_free(AllNew):- arcST,wdmsg(must_be_free(AllNew)),break,fail. +must_be_nonvar(AllNew):- nonvar_or_ci(AllNew),!. +must_be_nonvar(AllNew):- arcST,wdmsg(must_be_nonvar(AllNew)),break,fail. + +my_len(X,Y):- var(X),!,length(X,Y). +my_len(X,Y):- is_list(X),!,length(X,Y). +my_len(X,Y):- functor([_|_],F,A),functor(X,F,A),!,length(X,Y). +my_len(X,Y):- arcST,!,ibreak. +*/ +is_map(G):- is_vm_map(G),!. +%arc_webui:- false. +sort_safe(I,O):- catch(sort(I,O),_,I=O). +my_append(A,B):- append(A,B). +my_append(A,B,C):- append(A,B,C). +with_tty_false(Goal):- with_set_stream(current_output,tty(false),Goal). +with_tty_true(Goal):- with_set_stream(current_output,tty(true),Goal). + +% Count occurrences of G and store the result in N +count_of(G,N):- findall_vset(G,G,S),length(S,N). +findall_vset(T,G,S):- findall(T,G,L),variant_list_to_set(L,S). +flatten_objects(Objs,ObjsO):- flatten([Objs],ObjsO),!. + + +var_e(E,S):- E==S,!. +var_e(E,S):- (nonvar(E);attvar(E)),!,E=@=S. + +variant_list_to_set([E|List],Out):- select(S,List,Rest),var_e(E,S),!, variant_list_to_set([E|Rest],Out). +variant_list_to_set([E|List],[E|Out]):- !, variant_list_to_set(List,Out). +variant_list_to_set(H,H). + +nb_subst(Obj,New,Old):- + get_setarg_p1(nb_setarg,Found,Obj,P1),Found=@=Old, + p1_call(P1,New),!,nb_subst(Obj,New,Old). +nb_subst(_Obj,_New,_Old). + +system:any_arc_files(Some):- is_list(Some),!, Some\==[],maplist(any_arc_files,Some). +system:any_arc_files(Some):- atom_contains(Some,'arc'). + +:- thread_local(in_memo_cached/5). +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(before, Some):- any_arc_files(Some), forall(muarc:clear_all_caches,true). + +:- multifile(muarc:clear_all_caches/0). +:- dynamic(muarc:clear_all_caches/0). +muarc:clear_all_caches:- \+ luser_getval(extreme_caching,true), retractall(in_memo_cached(_,_,_,_,_)), fail. +%arc_memoized(G):- !, call(G). + +arc_memoized(G):- compound(G),ground(G),functor(G,F,1),functor(C,F,1),!,arc_memoized(C),G=C,!. +arc_memoized(G):- + copy_term(G,C,GT), + (Key = (C+GT)), + (in_memo_cached(Key,C,track,started,Info)->throw(already_memoizing(in_memo_cached(Key,C,track,started,Info))) ; true), + numbervars(Key,0,_,[attvar(bind),singletons(true)]),!, + setup_call_cleanup((asserta(in_memo_cached(Key,C,track,started,_),Started)), + catch( + (in_memo_cached(Key,C,GT,Found,AttGoals)*->(G=Found,maplist(call,AttGoals)) + ; ((call(G),copy_term(G,CG,GG)) *->asserta(in_memo_cached(Key,C,GT,CG,GG)) + ;asserta(in_memo_cached(Key,C,GT,failed,_)))), + E, (retractall(in_memo_cached(Key,C,GT,_,_)),throw(E))),erase(Started)). + +set_nth1(1,[_|Row],E,[E|Row]):-!. +set_nth1(N,[W|Row],E,[W|RowMod]):- Nm1 is N-1, set_nth1(Nm1,Row,E,RowMod). + +findall_count(T,G,N):- findall_set(T,G,S),length(S,N). + +findall_set(T,G,S):- findall(T,G,L),list_to_set(L,S). + +make_list_inited(0,_,[]):-!. +make_list_inited(1,E,[E]):-!. +make_list_inited(N,E,[E|List]):- Nm1 is N -1,make_list_inited(Nm1,E,List). + +nth_fact(P,I):- clause(P,true,Ref),nth_clause(P,I,Ref). + +nonvar_or_ci(C):- (nonvar(C);attvar(C)),!. + +add_i(Info):- + quietly((tersify(Info,InfoT), + luser_getval(test_rules,TRules), + luser_getval(pair_rules,PRules), + nb_set_add(TRules,InfoT), + nb_set_add(PRules,InfoT), + nop(pp(cyan,+InfoT)))). + +add_i(F,Info):- + append_term(i(F),Info,FInfo), + add_i(FInfo). + +add_rule(Info):- add_i(rule,Info). +add_cond(Info):- add_i(cond,Info). +%do_action(Info):- guess_pretty(Info),add_i(action,Info),call(Info). +do_action(Call):- !, copy_term(Call,Info),call(Call),add_i(action,Info). +add_action(Info):- add_i(action,Info). +add_note(Info):- add_i(note,Info). +add_indiv(W,Info):- add_i(indiv(W),Info). +add_comparitor(Info):- add_i(comparitor,Info). +show_rules:- + luser_getval(pair_rules,PRules), maplist(pp(cyan),PRules), + luser_getval(test_rules,TRules), maplist(pp(blue),TRules), + !. + + +sub_atom_value(TestID,A):- sub_term(A,TestID),(atom(A);string(A)). + +my_list_to_set(List, Set):- my_list_to_set(List, (=) ,Set). +my_list_to_set_variant(List, Set):- my_list_to_set(List, (=@=) ,Set). +my_list_to_set_cmp(List, Set):- my_list_to_set(List, (=@=) ,Set). + +my_list_to_set([E|List],P2, Set):- select(C,List,Rest), p2_call(P2, E,C), !, my_list_to_set([E|Rest],P2, Set). +my_list_to_set([E|List],P2, [E|Set]):-!, my_list_to_set(List,P2, Set). +my_list_to_set([],_,[]). + +my_list_to_set_cmp([E|List],C3, Set):- select(C,List,Rest), call(C3,R,E,C), + R== (=), my_list_to_set_cmp([C|Rest],C3, Set),!. + my_list_to_set_cmp([E|List],C3, [E|Set]):-!, my_list_to_set_cmp(List,C3, Set). +my_list_to_set_cmp([],_,[]). + + +contains_nonvar(N,Info):- sub_term(E,Info),nonvar_or_ci(E),E=N,!. + +max_min(A,B,C,D):- must_be_free(C),must_be_free(D),max_min0(A,B,C,D). +max_min0(A,B,B,B):- plain_var(A). +max_min0(A,B,A,A):- plain_var(B),!. +max_min0(A,B,C,D):- number(A),number(B), !, ((A > B) -> (C=A, D=B) ; (C=B, D=A)). +max_min0(_,A,A,A):- number(A),!. +max_min0(A,_,A,A):- number(A),!. +max_min0(_,_,_,_). + +as_debug(L,G):- as_debug(L,true,G). +as_debug(9,_,_):- !. +as_debug(_,C,G):- ignore(catch((call(C)->wots(S,G),format('~NDEBUG: ~w~N',[S]);true),_,true)). + +shall_count_as_same(A,B):- same_term(A,B),!. % unify ok_ok cmatch +shall_count_as_same(A,B):- plain_var(A),!,A==B. +shall_count_as_same(A,B):- atomic(A),!, A=@=B. +shall_count_as_same(A,B):- var(B),!,A=@=B. +shall_count_as_same(A,B):- A=@=B,!. +shall_count_as_same(A,B):- copy_term(B,CB),copy_term(A,CA),\+ \+ ( A=B, B=@=CB, A=@=CA),!. +%shall_count_as_same(A,B):- \+ A \= B, !. + +count_each([C|L],GC,[Len-C|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),!,count_each(L,GC,LL). +count_each([],_,[]). + +count_each_inv([C|L],GC,[C-Len|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),count_each_inv(L,GC,LL). +count_each_inv([],_,[]). + +maplist_n(N,P,[H1|T1]):- + p2_call(P,N,H1), N1 is N+1, + maplist_n(N1,P,T1). +maplist_n(_N,_P,[]). + +maplist_n(N,P,[H1|T1],[H2|T2]):- + call(P,N,H1,H2), N1 is N+1, + maplist_n(N1,P,T1,T2). +maplist_n(_N,_P,[],[]). + +/* +print_points_grid(Points):- + points_range(Points, LoH, LoV, HiH, HiV, H, V), writeqln(size_range(LoH, LoV, HiH, HiV, H, V)), points_to_grid(Points, Grid), print_grid(Grid). + +print_points_grid(Grid):- + points_range(Grid, LoH, LoV, HiH, HiV, _H, _V), print_grid(Grid, LoH, LoV, HiH, HiV, Grid). +*/ + + +%print_trainer:- kaggle_arc_train(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). +%print_evaler:- kaggle_arc_eval(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). + + /* +% data looks like + +kaggle_arc_train('007bbfb7', trn, [[0, 7, 7], [7, 7, 7], [0, 7, 7]], [[0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [7, 7, 7, 7, 7, 7, 7, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7]]). +kaggle_arc_train('007bbfb7', trn, [[4,0, 4], [0,0,0], [0, 4,0]], [[4,0, 4,0,0,0, 4,0, 4], [0,0,0,0,0,0,0,0,0], [0, 4,0,0,0,0,0, 4,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 4,0, 4,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 4,0,0,0,0]]). +kaggle_arc_train('007bbfb7', trn, [[0,0,0], [0,0, 2], [2,0, 2]], [[0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 2], [0,0,0,0,0,0, 2,0, 2], [0,0,0,0,0,0,0,0,0], [0,0, 2,0,0,0,0,0, 2], [2,0, 2,0,0,0, 2,0, 2]]). +kaggle_arc_train('007bbfb7', trn, [[6, 6,0], [6,0,0], [0, 6, 6]], [[6, 6,0, 6, 6,0,0,0,0], [6,0,0, 6,0,0,0,0,0], [0, 6, 6,0, 6, 6,0,0,0], [6, 6,0,0,0,0,0,0,0], [6,0,0,0,0,0,0,0,0], [0, 6, 6,0,0,0,0,0,0], [0,0,0, 6, 6,0, 6, 6,0], [0,0,0, 6,0,0, 6,0,0], [0,0,0,0, 6, 6,0, 6, 6]]). +kaggle_arc_train('007bbfb7', trn, [[2, 2, 2], [0,0,0], [0, 2, 2]], [[2, 2, 2, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0, 2, 2,0, 2, 2,0, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 2, 2,0, 2, 2]]). +kaggle_arc_train('007bbfb7', tst, [[7,0, 7], [7,0, 7], [7, 7,0]], [[7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7, 7,0, 7,0,0,0], [7,0, 7, 7,0, 7,0,0,0], [7, 7,0, 7, 7,0,0,0,0]]). + +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3,0, 3,0,0], [0,0, 3,0, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]], [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3, 4, 3,0,0], [0,0, 3, 4, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3,0, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3, 4, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3,0,0, 3,0, 3,0], [0,0,0, 3,0,0, 3, 3,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3, 4, 4, 3, 4, 3,0], [0,0,0, 3, 4, 4, 3, 3,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3,0,0, 3,0,0,0,0], [0,0, 3,0,0, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3,0, 3], [0,0,0, 3,0, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3, 4, 3], [0,0,0, 3, 4, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0,0, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 4, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', tst, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3,0,0,0,0, 3,0,0, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 4, 4, 4, 4, 3, 4, 4, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). +*/ +%tell(s), ignore((nl, nl, task_pairs(Name, ExampleNum, In, Out), format('~N~q.~n', [test_pairs_cache(Name, ExampleNum, In, Out)]), fail)), told. +map_pred(Pred, P, X) :- map_pred([],Pred, P, X). +%map_pred(NoCycles,_Pred, P, X) :- member(E,NoCycles), E==P,!, X = P. +map_pred(NoCycles,Pred, P, X) :- p2_call(Pred, P, X)*->true;map_pred0(NoCycles,Pred, P, X). + +map_pred1(Pred, P, P1) :- map_pred1(P, Pred, P, P1). + +map_pred0(_NoCycles,_Pred, Args, ArgSO) :- must_be_free(ArgSO), Args==[],!, ArgSO=[]. +map_pred0(_NoCycles, Pred, P, P1) :- p2_call(Pred, P, P1),!. % *->true;fail. +map_pred0(NoCycles,Pred, P, X) :- fail, attvar(P), !, %duplicate_term(P,X),P=X, + get_attrs(P,VS), map_pred([P|NoCycles],Pred, VS, VSX), P=X, put_attrs(X,VSX),!. +map_pred0(NoCycles,Pred, P, X):- map_pred1(NoCycles,Pred, P, X). + +map_pred1(_NoCycles,_Pred, P, P1) :- ( \+ compound(P) ; is_ftVar(P)), !, must_det_ll(P1=P), !. +% map_pred0(NoCycles,Pred, Args, ArgSO) :- is_list(Args), !, maplist(map_pred([Args|NoCycles],Pred), Args, ArgS), ArgS=ArgSO. +map_pred1(NoCycles,Pred, IO, OO) :- is_list(IO),!, maplist(map_pred(NoCycles,Pred), IO, OO). +map_pred1(NoCycles,Pred, IO, [O|ArgS]) :- IO= [I|Args], !, + map_pred([IO,ArgS|NoCycles],Pred, I, O), map_pred0([IO,I|NoCycles],Pred, Args, ArgS). +map_pred1(NoCycles,Pred, P, P1) :- + compound_name_arguments(P, F, Args), maplist(map_pred([P|NoCycles],Pred),Args,ArgS), compound_name_arguments(P1, F, ArgS). +%map_pred(_Pred, P, P). +/* +:- meta_predicate map_pred(2, ?, ?, ?, ?). +map_pred(Pred, P, X, Sk, P1) :- must_be_free(X), p2_call(Pred, P, X), !, must(Sk=P1), !. +map_pred(_Pred, P, _, _, P1) :- is_ftVar(P), !, must(P1=P), !. +map_pred(Pred, [P|Args], X, Sk, [P1|ArgS]) :- !, map_pred(Pred, P, X, Sk, P1), !, must(map_pred(Pred, Args, X, Sk, ArgS)), !. +map_pred(Pred, P, X, Sk, P1) :- compound(P), !, compound_name_arguments(P, F, Args), map_pred(Pred, [F|Args], X, Sk, [Fs|ArgS]), !, compound_name_arguments(P1, Fs, ArgS), !. +map_pred(_Pred, P, _, _, P). +*/ +is_cons(A):- compound(A),A=[_|_]. + +into_grid_or_var(G,G):- is_cons(G),!. +into_grid_or_var(G,G):- var(G),!. +into_grid_or_var(O,G):- cast_to_grid(O,G,_Uncast),!. + +maybe_mapgrid(P2,I,O):- is_grid(I),!,mapgrid(P2,I,O). +maybe_mapgrid(P3,I,O,M):- is_grid(I),!,mapgrid(P3,I,O,M). +maybe_mapgrid(P4,I,O,M,N):- is_grid(I),!,mapgrid(P4,I,O,M,N). + +mapgrid(P4,Grid,GridM,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridM,G2),into_grid_or_var(GridN,G3),into_grid_or_var(GridO,G4),mapg_list(P4,G1,G2,G3,G4). +mapg_list(P4,Grid,GridM,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P4),Grid,GridM,GridN,GridO). +mapg_list(P4,Grid,GridM,GridN,GridO):- call(P4,Grid,GridM,GridN,GridO),!. + +mapgrid(P3,Grid,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),into_grid_or_var(GridO,G3),mapg_list(P3,G1,G2,G3). +mapg_list(P3,Grid,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P3),Grid,GridN,GridO). +mapg_list(P3,Grid,GridN,GridO):- call(P3,Grid,GridN,GridO),!. + +mapgrid(P2, Grid,GridN):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),!,mapg_list(P2, G1,G2). +mapg_list(P2, Grid,GridN):- is_list(Grid),!,maplist(mapg_list(P2),Grid,GridN). +mapg_list(P2, Grid,GridN):- p2_call(P2, Grid,GridN),!. + +mapgrid(P1,Grid):- into_grid_or_var(Grid,G1),mapg_list(P1,G1). +mapg_list(P1,Grid):- is_list(Grid),!,maplist(mapg_list(P1),Grid). +mapg_list(P1,Grid):- p1_call(P1,Grid),!. + + +maplist_ignore(_3,H,I,J):- (H==[];I==[],J==[]),!,(ignore(H=[]),ignore(I=[]),ignore(J=[])). +maplist_ignore(P3,H,I,J):- \+ is_list(H),!, ignore(p2_call(call(P3,H),I,J)). +maplist_ignore(P3,[H|Grid],[I|GridN],[J|GridO]):- maplist_ignore(P3,H,I,J), !,maplist_ignore(P3,Grid,GridN,GridO). + +maplist_ignore(_2,H,I):- (H==[];I==[]),!,(ignore(H=[]),ignore(I=[])). +maplist_ignore(P2, H,I):- \+ is_list(H),!, ignore(p2_call(P2, H,I)). +maplist_ignore(P2, [H|Grid],[I|GridN]):- maplist_ignore(P2, H,I), !,maplist_ignore(P2, Grid,GridN). + +%p1_or(P1,Q1,E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). + +p1_call((P1;Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). +p1_call((P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). +p1_call(or(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). +p1_call(and(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). +p1_call(not(not(P1)),E):- !, \+ \+ p1_call(P1,E). +p1_call(not(P1),E):- !, not(p1_call(P1,E)). +p1_call(once(P1),E):- !, once(p1_call(P1,E)). +p1_call(ignore(P1),E):- !, ignore(p1_call(P1,E)). +p1_call(chk(P1),E):- !, \+ \+ (p1_call(P1,E)). +p1_call( \+ (P1),E):- !, \+ p1_call(P1,E). +p1_call(P1,E):- !, call(P1,E). + +chk(X,E):- \+ \+ call(X,E). + +p2_call_p2(P2a,P2b,A,B):- p2_call(P2a,A,M),p2_call(P2b,M,B). + +p2_call(P2,A,B):- P2==[],!,A=B. +p2_call(p1_call(P1),E,O):- !, p1_call(P1,E), E=O. +p2_call([P2],Grid,GridN):- !, p2_call(P2, Grid,GridN). +p2_call([P2|P2L],Grid,GridN):- !, p2_call(P2, Grid,GridM),p2_call(P2L,GridM,GridN). +p2_call(ignore(P2),A,B):- p2_call(P2,A,B)*->true;A=B. +p2_call(type(Type,P2),A,B):- into_type(Type,A,AA),p2_call(P2,AA,B). +p2_call(or(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,B);p2_call(Q2,A,B)). +p2_call(and(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,AB),p2_call(Q2,AB,B)). +p2_call(P2,A,B):- must_be(callable,P2), call(P2,A,B). + + +p1_or(P1A,P1B,X):- p1_call(P1A,X)->true;p1_call(P1B,X). +p1_and(P1A,P1B,X):- p1_call(P1A,X),p1_call(P1B,X). +p1_not(P1,E):- \+ p1_call(P1,E). +p1_ignore(P1,E):- ignore(p1_call(P1,E)). +p1_arg(N,P1,E):- tc_arg(N,E,Arg),p1_call(P1,Arg). +p1_subterm(P1,E):- sub_term(Arg,E),p1_call(P1,Arg). + +:- meta_predicate my_partition(-, ?, ?, ?). +my_partition(_,[],[],[]):-!. +my_partition(P1,[H|L],[H|I],E):- \+ \+ p1_call(P1,H),!, + my_partition(P1,L,I,E). +my_partition(P1,[H|L],I,[H|E]):- + my_partition(P1,L,I,E),!. +my_partition(P1,H,I,HE):- arcST,ibreak, + my_partition(P1,[H],I,HE). + + +mapgroup(P2,G1,L2):- into_list(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). +mapgroup(P1,G1):- into_list(G1,L1), !, with_my_group(L1,maplist(P1,L1)). + +selected_group(Grp):- nb_current('$outer_group',Grp),!. +selected_group([]). + +sub_cmpd(_, LF) :- \+ compound(LF), !, fail. +sub_cmpd(X, X). +sub_cmpd(X, Term) :- + ( is_list(Term) + -> member(E, Term), + sub_cmpd(X, E) + ; tc_arg(_, Term, Arg), + sub_cmpd(X, Arg) + ). + + + +%with_my_group([O|Grp],Goal):- compound(O),O=obj(_),!, locally(nb_setval('$outer_group',[O|Grp]),Goal). +with_my_group(_,Goal):- call(Goal). + +into_mlist(L,L). +my_maplist(P4,G1,L2,L3,L4):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P4,L1,L2,L3,L4)). +my_maplist(P3,G1,L2,L3):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P3,L1,L2,L3)). +my_maplist(P2,G1,L2):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). +my_maplist(P1,G1):- into_mlist(G1,L1), !, with_my_group(L1,maplist(P1,L1)). + + +my_include(P1,L,I):- include(p1_call(P1),L,I). +%my_include(P1,[H|L],O):- (p2_call(p1_call(P1),H,HH)*->(my_include(P1,L,I),O=[HH|I]);my_include(P1,L,O)). +my_include(_,_,[]). + +%my_exclude(P1,I,O):- my_include(not(P1),I,O). +my_exclude(P1,I,O):- my_partition(P1,I,_,O). + + +subst_1L([],Term,Term):-!. +subst_1L([X-Y|List], Term, NewTerm ) :- + subst0011(X, Y, Term, MTerm ), + subst_1L(List, MTerm, NewTerm ). + +subst_2L([],_,I,I). +subst_2L([F|FF],[R|RR],I,O):- subst0011(F,R,I,M),subst_2L(FF,RR,M,O). + + +subst001(I,F,R,O):- subst0011(F,R,I,O),!. + + +subst0011(X, Y, Term, NewTerm ) :- + copy_term((X,Y,Term),(CX,CY,Copy),Goals), + (Goals==[] + ->subst0011a( X, Y, Term, NewTerm ) + ;(subst0011a(CX, CY, Goals, NewGoals), + (NewGoals==Goals -> + subst0011a( X, Y, Term, NewTerm ) + ; (subst0011a(CX, CY, Copy, NewCopy), + NewTerm = NewCopy, maplist(call,NewGoals))))). + + + +subst0011a(X, Y, Term, NewTerm ) :- + ((X==Term)-> Y=NewTerm ; + (is_list(Term)-> maplist(subst0011a(X, Y), Term, NewTerm ); + (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; + ((compound_name_arguments(Term, F, Args), + maplist(subst0011a(X, Y), Args, ArgsNew), + compound_name_arguments( NewTerm, F, ArgsNew )))))),!. + +subst001C(I,F,R,O):- subst001_p2(same_term,I,F,R,O),!. +subst0011C(F,R,I,O):- subst0011_p2(same_term,F,R,I,O),!. +subst_2LC(F,R,I,O):- subst_2L_p2(same_term,F,R,I,O). + +subst_2L_p2(_P2, [],_,I,I):-!. +subst_2L_p2(_P2, _,[],I,I):-!. +subst_2L_p2(P2, [F|FF],[R|RR],I,O):- subst0011_p2(P2, F,R,I,M),subst_2L_p2(P2, FF,RR,M,O). + +subst001_p2(P2, I,F,R,O):- subst0011_p2(P2, F,R,I,O),!. + +subst_1L_p2(_, [],Term,Term):-!. +subst_1L_p2(P2, [X-Y|List], Term, NewTerm ) :- + subst0011_p2(P2, X, Y, Term, MTerm ), + subst_1L_p2(P2, List, MTerm, NewTerm ). + +subst0011_p2(P2, X, Y, Term, NewTerm ) :- + copy_term((X,Y,Term),(CX,CY,Copy),Goals), + (Goals==[] + ->subst0011a_p2(P2, X, Y, Term, NewTerm ) + ;(subst0011a_p2(P2, CX, CY, Goals, NewGoals), + (NewGoals==Goals -> + subst0011a_p2(P2, X, Y, Term, NewTerm ) + ; (subst0011a_p2(P2, CX, CY, Copy, NewCopy), + NewTerm = NewCopy, maplist(call,NewGoals))))). + +subst0011a_p2(P2, X, Y, Term, NewTerm ) :- + (p2_call(P2,X,Term)-> Y=NewTerm ; + (is_list(Term)-> maplist(subst0011a_p2(P2, X, Y), Term, NewTerm ); + (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; + ((compound_name_arguments(Term, F, Args), + maplist(subst0011a_p2(P2, X, Y), Args, ArgsNew), + compound_name_arguments( NewTerm, F, ArgsNew )))))),!. + + + +ppa(FF):- + copy_term(FF,FA,GF), + numbervars(FA+GF,0,_,[attvar(bind),singletons(true)]), + sort_safe(GF,GS),write(' '), + locally(b_setval(arc_can_portray,nil), + ppawt(FA)),format('~N'), + ignore((GS\==[], format('\t'),ppawt(attvars=GS),nl)),nl,!. + +ppawt(FA):- + write_term(FA,[numbervars(false), quoted(true), + character_escapes(true),cycles(true),dotlists(false),no_lists(false), + blobs(portray),attributes(dots), + portray(true), partial(false), fullstop(true), + %portray(false), partial(true), fullstop(true), + ignore_ops(false), quoted(true), quote_non_ascii(true), brace_terms(false)]). + +intersection(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB),!. + +same_univ(A,B):- (plain_var(A)->A==B;(B=@=A->true; (fail, \+ (A \=B )))). + +intersection_univ(APoints,BPoints,Intersected):- + intersection_univ(APoints,BPoints,Intersected,_,_),!. +intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). + +intersection_eq(APoints,BPoints,Intersected):- + intersection_eq(APoints,BPoints,Intersected,_,_),!. +intersection_eq(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). + +/* +intersection_u([],LeftOverB,[],[],LeftOverB):-!. +intersection_u(LeftOverA,[],[],LeftOverA,[]):-!. +intersection_u([A|APoints],BPoints,[A|Intersected],LeftOverA,LeftOverB):- + select(A,BPoints,BPointsMinusA),!, + intersection_u(APoints,BPointsMinusA,Intersected,LeftOverA,LeftOverB). +intersection_u([A|APoints],BPoints,Intersected,[A|LeftOverA],LeftOverB):- + intersection_u(APoints,BPoints,Intersected,LeftOverA,LeftOverB). +*/ + +:- meta_predicate(each_obj(?,?,0)). +each_obj([],_,_):-!. +each_obj([Obj|List],Obj,Goal):- ignore(Goal), each_obj(List,Obj,Goal). + +pred_intersection(_P2, [],LeftOverB, [],[], [],LeftOverB):-!. +pred_intersection(_P2, LeftOverA,[], [],[], LeftOverA,[]):-!. +pred_intersection(P2, [A|APoints],BPoints,[A|IntersectedA],[B|IntersectedB],LeftOverA,LeftOverB):- + select(B,BPoints,BPointsMinusA), + \+ \+ p2_call(P2, A,B),!, + pred_intersection(P2, APoints,BPointsMinusA,IntersectedA,IntersectedB,LeftOverA,LeftOverB). +pred_intersection(P2, [A|APoints],BPoints,IntersectedA,IntersectedB,[A|LeftOverA],LeftOverB):- + pred_intersection(P2, APoints,BPoints,IntersectedA,IntersectedB,LeftOverA,LeftOverB). + + + + + + + + + + + + + + + + + + + +pp(PP):-pp_m(PP). +pp(Color,PP):- ansi_format([fg(Color)],'~@',[pp(PP)]). + + +warn_skip(P):- pp(warn_skip(P)). + +with_set_stream(_,_,G):- call(G). + +fake_impl(M:F/A):- functor(P,F,A), asserta((M:P :- !, fail)). +fake_impl(F/A):- functor(P,F,A), asserta((P :- !, fail)). + + +:- fake_impl(arc_setval/3). +:- fake_impl(cast_to_grid/3). +:- fake_impl(dot_cfg:dictoo_decl/8). +:- fake_impl(get_param_sess/2). +:- fake_impl(into_list/2). +:- fake_impl(into_type/3). +:- fake_impl(is_grid/1). +:- fake_impl(is_hooked_obj/1). +:- fake_impl(is_vm_map/1). +:- fake_impl(ld_logicmoo_webui/0). +:- fake_impl(must_grid_call/3). +:- fake_impl(o_m_v/3). +:- fake_impl(quick_test/1). +:- fake_impl(url_decode_term/2). +:- fake_impl(xlisting_web:find_http_session/1). +:- fake_impl(xlisting_web:is_cgi_stream/0). + + +end_of_file. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +:- encoding(iso_latin_1). +/* + this is part of (H)MUARC https://logicmoo.org/xwiki/bin/view/Main/ARC/ + + This work may not be copied and used by anyone other than the author Douglas Miles + unless permission or license is granted (contact at business@logicmoo.org) +*/ + + +:- meta_predicate(print_grid(+,+,+,+)). +:- meta_predicate(print_grid(+,+,+)). + + +%:- autoload(library(http/html_write),[html/3,print_html/1]). + +is_debugging(M):- \+ \+ debugging(M),!. +%is_debugging(_):- menu_or_upper('B'). + +debug_m(_,Tiny):- display_length(Tiny,Len),Len<30,!,pp(Tiny). +debug_m(M,_):- \+ is_debugging(M),!. +%debug_m(_,List):- is_list(List),!,print_ss(List). +debug_m(_,Term):- pp(Term). +debug_c(M,_):- \+ is_debugging(M),!. +debug_c(_,C):- call(C),!. +debug_c(M,C):- wots_hs(S,C),debug_m(M,S),!. + +:- meta_predicate(wno(0)). +wno(G):- + locally(b_setval(print_collapsed,10), G). + +:- meta_predicate(print_collapsed(0)). +print_collapsed(Size,G):- + locally(b_setval(print_collapsed,Size), print_collapsed0(Size,G)). + +:- meta_predicate(print_collapsed0(0)). +print_collapsed0(Size,G):- Size<10, !, call(G). +% print_collapsed(Size,G):- call(G). +print_collapsed0(Size,G):- Size>=10, !, wots_hs(_S,G). +print_collapsed0(_,G):- wots_vs(S,G),write(S). + +tersify(I,O):- tracing,!,I=O. +%tersify(I,O):- term_variables(I,Vs), \+ ( member(V,Vs), attvar(V)),!,I=O. +tersify(I,O):- tersify23(I,O),!. +tersify(X,X):-!. + +tersify23(I,O):- quietly((tersify2(I,M),tersify3(M,O))),!. + +%srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). +%srw_arc(I,O):- compound(I),!, wots_hs(O,(write(ppt(I)))). +/* +srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). +*/ +srw_arc(I,O):- is_vm_map(I),!, O='..vvmm..'. +srw_arc(I,O):- is_grid(I),!, O='..grid..'. +/* +srw_arc(List,O):- current_prolog_flag(dmsg_len,Three), + is_list(List),length(List,L),L>Three, + append([A,B,C],[F|_],List),F \='...'(_), !, + simplify_goal_printed([A,B,C,'....'(L>Three)],O). +*/ +%srw_arc(gridFn(_),gridFn):-!. +%srw_arc(I,O):- is_points_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. +%srw_arc(I,O):- is_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. +srw_arc(I,O):- tersify(I,O),!,I\==O,!. + +:- multifile(dumpst_hook:simple_rewrite/2). +:- dynamic(dumpst_hook:simple_rewrite/2). + +dumpst_hook:simple_rewrite(I,O):- fail, notrace(catch(arc_simple_rewrite(I,O),_,fail)). + +arc_simple_rewrite(I,O):- + \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), + current_predicate(bfly_startup/0), + current_predicate(is_group/1), + b_setval(arc_can_portray,nil), + locally(b_setval(arc_can_portray,nil),once((compound(I), lock_doing(srw_arc,I,srw_arc(I,O))))), I\==O, I\=@=O, !, \+ I=O, + b_setval(arc_can_portray,t). + + +%:- set_prolog_flag(never_pp_hook, true). + + +portray_terse:- true,!. + +:- discontiguous arc_portray/2. + + +arc_portray(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +arc_portray(_,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), !, fail. +arc_portray(Map,TF):- get_map_pairs(Map,Type,Pairs),!, arc_portray_pairs(Type,TF,Pairs). + +arc_portray_t(G, _):- is_vm_map(G), !, write_map(G,'arc_portray_t'). +arc_portray_t(G, _):- is_grid(G), !, data_type(G,W),writeq(grid(W)). +arc_portray_t(G, _):- print(G),!. + +arc_portray(G, _):- is_vm_map(G), !, write_map(G,'arc_portray'). +arc_portray(G, TF):- TF == true, portray_terse, arc_portray_t(G, TF),!. +arc_portray(G, TF):- catch(arc_portray_nt(G, TF),E,(writeln(E),never_let_arc_portray_again,fail)),!. +%arc_portray(G, _TF):- writeq(G),!. + +% Portray In Debugger + +arc_portray_nt(G, false):- is_grid(G), print_grid(G),!. +%arc_portray_nt([G|L],_False):- is_object(G), !, pp([G|L]). +%arc_portray_nt(G0, true):- is_group(G0), ppt(G0),!. +%arc_portray_nt(G0, false):- is_group(G0), ppt(G0),!. +arc_portray_nt(G0, Tracing):- is_group(G0), into_list(G0,G), length(G,L),% L>1, !, + maplist(tersify,G0,GG), write(GG), + if_t(Tracing==false, + in_cmt(( + dash_chars, + once(((why_grouped(_TestID,Why,WG),WG=@=G,fail);(Why = (size2D=L)))),!, + print_grid(Why,G),nl_now, + + %underline_print(writeln(Why)), + %print_info_l(G), + dash_chars))). + + +arc_portray_nt(G,_False):- is_object(G), wots(S,writeg(G)), + global_grid(G,GG),!, + print_grid(GG), + write(S),!. % show_indiv(S,G). + %object_grid(G,OG), + %neighbor_map(OG,NG), !, + %print_grid(object_grid,NG),nl_now, + %underline_print(print_info(G)), + +arc_portray_nt(G,false):- via_print_grid(G),!, grid_size(G,H,V),!,H>0,V>0, print_grid(H,V,G). + +% Portray In tracer +arc_portray_nt(G,true):- is_object(G),underline_print((ppt(G))). +arc_portray_nt(G,true):- via_print_grid(G),write_nbsp,underline_print((ppt(G))),write_nbsp. +arc_portray_nt(G,true):- tersify(G,O),write_nbsp,writeq(O),write_nbsp. +arc_portray_nt(G0, _):- \+ is_gridoid(G0),!,print(G0). + + +arc_portray_pairs(Type,TF,Pairs):- + length(Pairs,N), + writeln(arc_portray_pairs(Type,TF,len(N))), + swap_kv(Pairs,VKPairs), + keysort(VKPairs,SVKPairs), + my_maplist(tc_arg(2),SVKPairs,SVKPairs2), + arc_portray_type_pairs(TF,SVKPairs2). + +arc_portray_type_pairs(TF,Pairs):- append(Left,[K1-V1,K2-V2|Right],Pairs),is_grid(V1),is_grid(V2),!, + append(Left,[call-print_side_by_side(yellow,V1,K1,_,V2,K2)|Right],PairsM), + arc_portray_type_pairs(TF,PairsM). +arc_portray_type_pairs(TF,Pairs):- + forall(member(K-V,Pairs),arc_portray_pair(Pairs,K,V,TF)). + +swap_kv([_-V|Pairs],VKPairs):- plain_var(V),!, swap_kv(Pairs,VKPairs). +swap_kv([K-V|Pairs],['-'(Type,K-V)|VKPairs]):- + data_type(V,Type), + swap_kv(Pairs,VKPairs). +swap_kv([],[]). + + +arc_portray_pair(Ps,K,Val,TF):- + nl_if_needed, + arc_portray_1_pair(Ps,K,Val,TF), + nl_if_needed_ansi. + +arc_portray_1_pair(_Ps,call,Val,_TF):- !, call(Val). +arc_portray_1_pair(Ps,K,Val,TF):- + (via_print_grid(Val) -> print_grid(K,Val) + ; (print(K),write('= '),once(arc_portray(Val,TF);print(Val)))), + ignore(arc_portray_pair_optional(Ps,K,Val,TF)),!. + +arc_portray_pair_optional(Ps,K,Val,TF):- + once(( Val\==[], is_list(Val),my_maplist(is_object,Val), + print_info(Val), + Val \= [_], + compare_objects(Val,Diffs), + color_print(cyan,call(arc_portray_pair(Ps,diffs(K),Diffs,TF))))). + + +% arc_portray(G):- \+ \+ catch((wots_hs(S,( tracing->arc_portray(G,true);arc_portray(G,false))),write(S),ttyflush),_,fail). +arc_portray(G):- \+ compound(G),fail. +arc_portray(G):- is_vm(G), !, write('..VM..'). +arc_portray(G):- \+ nb_current(arc_portray,t),\+ nb_current(arc_portray,f),is_print_collapsed,!, + locally(nb_setval(arc_portray,t),arc_portray1(G)). +arc_portray(G):- \+ nb_current(arc_portray,f),!, locally(nb_setval(arc_portray,t),arc_portray1(G)). +arc_portray(G):- locally(nb_setval(arc_portray,f),arc_portray1(G)). + +arc_portray1(G):- + flag(arc_portray_current_depth,X,X), X < 3, + \+ \+ + setup_call_cleanup(flag(arc_portray_current_depth,X,X+1),catch(((tracing->arc_portray(G,true); + arc_portray(G,false)),ttyflush),E,(fail,format(user_error,"~N~q~n",[E]),fail)),flag(arc_portray_current_depth,_,X)). + + +%via_print_grid(G):- tracing,!,fail. +via_print_grid(G):- is_points_list(G). %,!,fail,grid_size(G,H,V),number(H),number(V),H>1,V>1. +via_print_grid(G):- is_grid(G). +via_print_grid(G):- is_obj_props(G),!,fail. +via_print_grid(G):- is_object(G). +via_print_grid(G):- is_group(G). +via_print_grid(G):- is_gridoid(G). + + + +terseA(_,[],[]):- !. +terseA(_,L,'... attrs ...'(N)):- is_list(L),length(L,N),N>10,!. +terseA(I,[A|L],[B|LL]):-terseA(I,A,B),terseA(I,L,LL),!. +terseA(I,dif(A,B),B):-A==I,!. +terseA(I,dif(B,A),B):-A==I,!. +terseA(_,put_attr(_,B,A),A):- B==ci,!. +terseA(_,put_attr(_,B,A),B=A):-!. +terseA(_,A,A):-!. + + +simple_enough(I):- plain_var(I). +simple_enough(I):- atomic(I). +simple_enough(I):- \+ compound(I),!. +simple_enough(_*_):-!. +simple_enough(_+_):-!. +simple_enough(A):- functor(A,_,1),tc_arg(1,A,E),!,simple_enough(E). +%simple_enough(I):- number(I). +%simple_enough(I):- atom(I). + +tersify0(I,O):- simple_enough(I),!,I=O. +tersify0(I,av(C,Others)):- attvar(I),copy_term(I,C,Attrs),terseA(C,Attrs,Others),!. +tersify0(I,I):- var(I),!. + + +%tersifyC(D):- is_vm_map(D),!. +tersifyC(av(_,_)). +tersifyC(objFn(_,_)). +tersifyC(groupFn(_,_)). +tersifyC(objFn(_)). +tersifyC(groupFn(_)). + +tersify1(I,O):- simple_enough(I),!,I=O. +tersify1(av(_,Blue), -(Blue)):-!. +tersify1(I,O):- compound(I), tersifyC(I),!,I=O. +tersify1(gridFn(I),gridFn(I)):-!. % tersifyG(I,O). +%tersify1(gridFn(I),gridFn(O)):-tersifyG(I,O). +tersify1(Nil,[]):- Nil == [],!. +tersify1(I,gridFn(S)):- is_grid(I), into_gridnameA(I,O),!,sformat(S,'~w',[O]). +tersify1(I,gridFn(O)):- is_grid(I),tersifyG(I,O),!. +tersify1(I,groupFn(O,List)):- is_group(I), mapgroup(tersify1,I,List),mapgroup(obj_to_oid,I,OIDs),length(List,N), !,ignore((get_current_test(TestID),is_why_grouped(TestID,N,Why,OIDs),!,O=Why)). + +tersify1(I,Q):- is_object(I),object_ref_desc(I,Q),!. +tersify1(I,O):- is_vm_map(I), get_kov(objs,I,_),!, O='$VAR'('VM'). +tersify1(I,O):- is_vm_map(I), get_kov(pairs,I,_),!, O='$VAR'('Training'). + + +tersifyG(I,O):- tersifyL(I,O),numbervars(O,1,_,[attvar(bind),singletons(false)]),!. + +%tersifyL(I,I):- is_ftVar(I),!. +%tersifyL(I,I):- \+ compound(I),!. +tersifyL(I,O):- \+ is_cons(I),!,O=I. +tersifyL([H|I],[HH|I]):- \+ is_list(I),!,tersify(H,HH). +tersifyL([H|I],O):- nonvar(H), \+ is_group(I), display_length(I,N) , N>170, + length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O),!. +tersifyL(I,O):- tersify0(I,O),!. +tersifyL([H|TT],[HH|TT]):- tersify(H,HH),!,tersifyL(TT,TT),!. +tersifyL(I,O):- tersify1(I,O),!. +tersifyL(I,I). + +tersify2(I,O):- compound(I),(I=(N=V)),tersify2(N,NN),tersify2(V,VV),!,O=(NN=VV). +tersify2(I,O):- simple_enough(I),!,I=O. +tersify2(I,O):- compound(I),tersify1(I,O),!. +tersify2(I,O):- tersify0(I,O),!. +tersify2(I,O):- is_list(I), !, my_maplist(tersify2,I,O). +tersify2(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). +tersify2(I,I). + +tersify3(I,O):- compound(I),(I=(N=V)),tersify3(N,NN),tersify3(V,VV),!,O=(NN=VV). +tersify3(I,O):- simple_enough(I),!,I=O. +tersify3(I,O):- compound(I),tersify1(I,O),!. +tersify3(I,O):- tersify0(I,O),!. +tersify3([H|I],O):- is_list(I), ((display_length(I,N), N>170) -> + (length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O)); I=O),!. +tersify3(I,O):- is_list(I), !, my_maplist(tersify3,I,O). +tersify3(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). +tersify3(I,I). + +write_map(G,Where):- is_vm(G), !, write('...VM_'),write(Where),write('...'). +write_map(G,Where):- is_vm_map(G), !, write('...Map_'),write(Where),write('...'). +write_map(G,Where):- is_dict(G), !, write('...Dict_'),write(Where),write('...'). +write_map(_G,Where):- write('...'),write(Where),write('...'). + + + +non_empty_wqs_c(V):- \+ empty_wqs_c(V). +empty_wqs_c(V):- var(V),!,fail. +empty_wqs_c(A):- atom(A),atom_string(A,S),!,empty_wqs_c(S). +empty_wqs_c([]). +empty_wqs_c(""). +empty_wqs_c(" "). +empty_wqs_c(" "). +empty_wqs_c("\n"). + +is_writer_goal(H):- \+ callable(H),!,fail. +is_writer_goal(H):- is_list(H),!,fail. +is_writer_goal(A):- atom(A),!,is_writer_goal_f(A). +is_writer_goal(H):- \+ compound(H),!,fail. +%is_writer_goal((C1,C2)):- !, (is_writer_goal(C1);is_writer_goal(C2)). +is_writer_goal(C):- compound_name_arity(C,F,_),once(is_writer_goal_f(F);(tc_arg(_,C,E),is_writer_goal(E))). + + +is_writer_goal_f(wqs_c). +is_writer_goal_f(F):- is_writer_goal_l(F),!. +is_writer_goal_f(F):- \+ atom(F),!, term_to_atom(F,A),is_writer_goal_f(A). +is_writer_goal_f(F):- not_writer_goal_r(R),atom_concat(_,R,F),!,fail. +is_writer_goal_f(F):- is_writer_goal_l(L),atom_concat(L,_,F),!. +is_writer_goal_f(F):- is_writer_goal_l(R),atom_concat(_,R,F),!. +not_writer_goal_r(test). is_writer_goal_l(msg). is_writer_goal_l(call). +is_writer_goal_l(nl). is_writer_goal_l(format). is_writer_goal_l(with_). +is_writer_goal_l(locally). + +is_writer_goal_l(html). is_writer_goal_l(ptcol). is_writer_goal_l(wots). +is_writer_goal_l(print). is_writer_goal_l(flush_output). is_writer_goal_l(wqs). +is_writer_goal_l(pp). is_writer_goal_l(write). is_writer_goal_l(dash_). + + +maybe_color(SS,_):- term_contains_ansi(SS),!, write_nbsp, write(SS). +maybe_color(SS,P):- term_contains_ansi(P),!, write_nbsp, write(SS). +maybe_color(SS,P):- pp_msg_color(P,C), ansicall(C,is_maybe_bold(P,write(SS))),!. + +write_atom(S):- \+ atom(S),!,wqs(S). +write_atom(S):- atom_contains(S,'~'),!,notrace(catch(format(S,[]),_,maybe_write_atom_link(S))). +write_atom(S):- maybe_write_atom_link(S),!. +write_atom(S):- into_title_str(S,TS),write(TS),!. + +:- meta_predicate(into_title_str(+,-)). +into_title_str(Term,Str):- string(Term),!,Str=Term. +into_title_str(Term,Str):- plain_var(Term),sformat(Str,'~p',[Term]),!. +into_title_str(Term,Str):- var(Term),tersify0(Term,Terse), sformat(Str,'~p',[Terse]),!. +into_title_str(Term,Str):- term_is_ansi(Term), wots(Str,write_keeping_ansi_mb(Term)),!. +into_title_str(Term,Str):- (is_codelist(Term);is_charlist(Term)),catch(sformat(Str,'~s',[Term]),_,sformat(Str,'~p',[Term])),!. +into_title_str(Term,Str):- is_list(Term),my_maplist(into_title_str,Term,O3),atomics_to_string(O3," ",Str),!. +into_title_str([H|T],Str):- into_title_str(H,A),into_title_str(T,B),atomics_to_string([A,B]," ",Str),!. +into_title_str(Term,Str):- \+ callable(Term),sformat(Str,'~p',[Term]),!. +into_title_str(format(Fmt,Args),Str):- sformat(Str,Fmt,Args),!. +into_title_str(Term,""):- empty_wqs_c(Term),!. +into_title_str(out,"Output"). +into_title_str(in,"Input"). +into_title_str(i,"IN"). +into_title_str(o,"OUT"). +into_title_str(Term,Str):- atom(Term),is_valid_linkid(Term,Kind,_),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[Term,KS]),!. +into_title_str(Term,Str):- atom(Term), atom_contains(Term,'_'), \+ atom_contains(Term,' '), to_case_breaks(Term,T), + include(\=(xti(_,punct)),T,O),my_maplist(tc_arg(1),O,O1),my_maplist(toProperCamelAtom,O1,O2), + atomics_to_string(O2," ",Str),!. +into_title_str(Term,Str):- has_short_id(Term,Kind,ID),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[ID,KS]),!. + +into_title_str(T-U,Str):- into_title_str([some(T),"..to..",some(U)],Str). +into_title_str(T*U,Str):- into_title_str([some(T),"(",some(U),")"],Str). +into_title_str(T+U,Str):- into_title_str(T,S1), number(U), N is U+1, sformat(Str,'~w #~w',[S1,N]). +into_title_str(T+U,Str):- var(U), into_title_str(T,S1), sformat(Str,'~w(s)',[S1]). +into_title_str(title(Term),Str):- !, into_title_str(Term,Str),!. +into_title_str(some(Var),"Some"):- var(Var),!. +into_title_str(some(Var),Str):- !, into_title_str(Var,Str). +into_title_str(User:Term,Str):- User == user, !, into_title_str(Term,Str). +into_title_str(trn,"Training Pair"). +into_title_str(tst,"EVALUATION TEST"). +%into_title_str(Term,Str):- tersify23(Term,Terse),Term\=@=Terse,!,into_title_str(Terse,Str). +into_title_str(Term,Str):- callable_arity(Term,0),is_writer_goal(Term),catch(notrace(wots(Str,call_e_dmsg(Term))),_,fail),!. +into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)),nonvar(Str),atom_length(Str,E50),E50<180,!. +into_title_str(Term,Str):- compound(Term), compound_name_arguments(Term,Name,Args), + %include(not_p1(plain_var),Args,Nonvars), + Args=Nonvars, + my_maplist(tersify,Nonvars,ArgsT), into_title_str([Name,"(",ArgsT,")"],Str),!. +into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)). + +has_short_id(TestID,testid,UUID):- is_valid_testname(TestID),test_id_atom(TestID,UUID). +has_short_id(Obj,object,OID):- is_object(Obj),obj_to_oid(Obj,OID). +has_short_id(Grid,grid,GID):- is_grid(Grid),grid_to_gid(Grid,GID). + + +is_valid_linkid(ID,testid,TestID):- atom_id(ID,TestID),is_valid_testname(TestID),!. +is_valid_linkid(ID,object,Obj):- known_object(ID,Obj),!. +is_valid_linkid(ID,grid,Grid):- known_grid(ID,Grid),!. +% individuate_3(complete, two(v_1d398264_trn_0_in, v_1d398264_trn_0_out)) +is_valid_linkid(ID,group,Grp):- get_current_test(TestID),is_why_grouped_g(TestID,_Count,ID,Grp). + + +wqs_c(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +wqs_c(S):- (string(S);is_codelist(S);is_charlist(S)),catch(format('~s',[S]),_,writeq(S)). +wqs_c(S):- empty_wqs_c(S),!. +wqs_c(S):- var(S),!,write(var(S)). +wqs_c(S):- atom(S),into_title_str(S,TS),write(TS),!. +wqs_c(S):- atom(S),write_atom(S),!. +%wqs_c(S):- atom(S),write(S),!. +wqs_c(S):- \+compound(S),!,notrace(catch(format('~p',[S]),_,write(S))). +wqs_c(title(S)):- !, wqs_c(S). +wqs_c(H+T):- !, wqs_c(H),write_nbsp,wqs_c(T). +wqs_c(S):- is_grid(S), print_grid(S),!. +wqs_c(S):- is_vm(S), pp(S) ,!. +wqs_c(L):- is_list(L), include(non_empty_wqs_c,L,LL),!,wqs_c_l(LL). +wqs_c([H|T]):- pp([H|T]),!. +wqs_c(H):- callable_arity(H,0),is_writer_goal(H),catch(call_e_dmsg(H),_,fail),!. +%wqs_c(H):- callable_arity(H,0),call(H),!. +wqs_c(H):- locally(t_l:wqs_fb(pp_no_nl),wqs(H)),!. + +wqs_c_l([]):-!. +wqs_c_l([H]):- wqs_c(H),!. +wqs_c_l([H|T]):- wqs_c(H),write_nbsp,wqs_c_l(T),!. + + + + + +ppt(_):- is_print_collapsed,!. +ppt(G):- stack_check_or_call(4000,writeq(G)),!. +ppt(G):- is_vm_map(G), !, write_map(G,'ppt'). +ppt(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +%ppt(P):- compound(P),wqs1(P),!. + +ppt(P):- \+ ansi_main, wants_html,!,ptcol_html(P),write_br. +ppt(P):- \+ \+ ((tersify(P,Q),!,pp(Q))),!. +ppt(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,ptcol_html(P)),write_br. +ppt(Color,P):- \+ \+ ((tersify(P,Q),!,pp(Color,Q))),!. + + +write_br:- ansi_main,!,nl. +write_br:- write('
    '). + +ptc(Color,Call):- pp(Color,call(Call)). + +:- meta_predicate(ppnl(+)). +ppnl(Term):- is_list(Term),!,g_out(wqs(Term)). +ppnl(Term):- nl_if_needed,format('~q',[Term]),nl_if_needed_ansi. + +:- meta_predicate(pp(+)). +pp(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,pp(P)),write_br. +pp(Color,P):- ignore((quietlyd((wots_hs(S,pp(P)),!,color_print(Color,S))))). + +pp(_):- is_print_collapsed,!. +%pp(Term):- is_toplevel_printing(Term), !, nl_if_needed, pp_no_nl(Term),!,nl_if_needed_ansi. +pp(_Term):- nl_if_needed, fail. +pp(Term):- \+ ansi_main, wants_html,!, wots_vs(SS,ptcol_html_scrollable(Term)),write(SS),write_br. +pp(Term):- \+ nb_current(arc_can_portray,_),!,locally(nb_setval(arc_can_portray,t),print(Term)). +pp(Term):- az_ansi(pp_no_nl(Term)),!,nl_if_needed_ansi. + +/* +ptcol(P):- wants_html,!,ptcol_html(P). +ptcol(call(P)):- callable(P),!,call(P). +ptcol(P):- pp(P). +*/ + +%ptcol_html(P):- ptcol_html_0(P). +ptcol_html(P):- ptcol_html_scrollable_0(P). +ptcol_html_scrollable(P):- with_tag_ats(div,scrollable,ptcol_html_scrollable_0(P)). + + +ptcol_html_0(P):- with_tag(pre,ptcol_html_wo_pre(P)). +ptcol_html_wo_pre(call(P)):- callable(P),!, in_pp_html(call(P)). +ptcol_html_wo_pre(P):- in_pp_html(print_tree_no_nl(P)). +ptcol_html_scrollable_0(P):- ptcol_html_wo_pre(P). + + +pp_wcg(G):- wants_html,!,ptcol_html_scrollable(G). +pp_wcg(G):- pp_safe(call((locally(nb_setval(arc_can_portray,t),print(G))))),!. + +wqln(Term):- ppnl(Term). +wqnl(G):- pp_safe(call((locally(nb_setval(arc_can_portray,nil),print(G))))),!. + +pp_safe(_):- nb_current(pp_hide,t),!. +pp_safe(call(W)):- !, nl_if_needed,nl_now,call(W),nl_now. +pp_safe(W):- nl_if_needed,nl_now,writeq(W),nl_now. +pp_safe(C,W):- color_print(C,call(pp_safe(W))). + + +%p_p_t_no_nl(Term):- is_toplevel_printing(Term), !, print_tree_no_nl(Term). + +p_p_t_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). +p_p_t_no_nl(Term):- az_ansi(print_tree_no_nl(Term)). + +ppt_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). +ppt_no_nl(P):- tersify(P,Q),!,pp_no_nl(Q). + +is_toplevel_printing(_):- \+ is_string_output, line_position(current_output,N), N<2, fail. + +pp_no_nl(P):- var(P),!,pp(var_pt(P)),nop((dumpST,ibreak)). +pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_no_nl(P):- atom(P),atom_contains(P,'~'),!,format(P). +pp_no_nl(G):- is_vm_map(G), !, write_map(G,'pp'). +%pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_no_nl(P):- \+ \+ (( pt_guess_pretty(P,GP),ptw(GP))). +%pp(P):-!,writeq(P). +%ptw(P):- quietlyd(p_p_t_nl(P)),!. +%ptw(_):- nl_if_needed,fail. +ptw(P):- var(P),!,ptw(var_ptw(P)),nop((dumpST,ibreak)). +ptw(G):- is_vm_map(G), !, write_map(G,'ptw'). +ptw(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +ptw(P):- p_p_t_no_nl(P),!. + +%ptw(P):- quietlyd(write_term(P,[blobs(portray),quoted(true),quote_non_ascii(false), portray_goal(print_ansi_tree),portray(true)])),!. +print_ansi_tree(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +print_ansi_tree(P,_):- catch(arc_portray(P),_,(never_let_arc_portray_again,fail)),!. +print_ansi_tree(P,_OL):- catch(p_p_t_no_nl(P),_,(never_let_arc_portray_again,fail)),!. + +%p_p_t_nl(T):- az_ansi(print_tree_nl(T)). +%p_p_t(T):- az_ansi(print_tree(T)). + +pt_guess_pretty(P,O):- \+ nb_current(in_pt_guess_pretty,t), locally(nb_setval(in_pt_guess_pretty,t),pt_guess_pretty_1(P,O)). +pt_guess_pretty(O,O). + +upcase_atom_var_l(IntL,NameL):- upcase_atom_var(IntL,NameL). +upcase_atom_var_l(IntL,NameL):- is_list(IntL),!,my_maplist(upcase_atom_var_l,IntL,NameL). + +pt_guess_pretty_1(P,O):- copy_term(P,O,_), + ignore((sub_term(Body,O), compound(Body), Body=was_once(InSet,InVars),upcase_atom_var_l(InSet,InVars))), + ignore(pretty1(O)),ignore(pretty_two(O)),ignore(pretty_three(O)),ignore(pretty_final(O)),!, + ((term_singletons(O,SS),numbervars(SS,999999999999,_,[attvar(skip),singletons(true)]))). + +:- dynamic(pretty_clauses:pp_hook/3). +:- multifile(pretty_clauses:pp_hook/3). +:- module_transparent(pretty_clauses:pp_hook/3). +pretty_clauses:pp_hook(FS,Tab,S):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), notrace(catch(arc_pp_hook(FS,Tab,S),_,fail)). + +arc_pp_hook(_,Tab,S):- term_is_ansi(S), !,prefix_spaces(Tab), write_keeping_ansi_mb(S). +%arc_pp_hook(_,Tab,S):- is_vm(S),!,prefix_spaces(Tab),!,write('..VM..'). +%arc_pp_hook(_, _,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +arc_pp_hook(FS,_ ,G):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), + current_predicate(is_group/1), + locally(b_setval(pp_parent,FS), + print_with_pad(pp_hook_g(G))),!. + +pp_parent(PP):- nb_current(pp_parent,PP),!. +pp_parent([]):-!. + +%:- meta_predicate(lock_doing(+,+,0)). +:- meta_predicate(lock_doing(+,+,:)). +lock_doing(Lock,G,Goal):- + (nb_current(Lock,Was);Was=[]), !, + \+ ((member(E,Was),E==G)), + locally(nb_setval(Lock,[G|Was]),Goal). + +never_let_arc_portray_again:- set_prolog_flag(never_pp_hook, true),!. +arc_can_portray:- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t). + +arcp:will_arc_portray:- + \+ current_prolog_flag(never_pp_hook, true), + \+ nb_current(arc_can_portray,f), + %nb_current(arc_can_portray,t), + current_prolog_flag(debug,false), + \+ tracing, + flag(arc_portray_current_depth,X,X),X<3, + current_predicate(bfly_startup/0). + +user:portray(Grid):- + arcp:will_arc_portray, \+ \+ catch(quietly(arc_portray(Grid)),_,fail),!, flush_output. + + +pp_hook_g(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_hook_g(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +pp_hook_g(S):- term_contains_ansi(S), !, write_nbsp, pp_hook_g0(S). +pp_hook_g(G):- \+ plain_var(G), lock_doing(in_pp_hook_g,G,pp_hook_g0(G)). + +pp_hook_g0(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +pp_hook_g0(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +pp_hook_g0(_):- in_pp(bfly),!,fail. +pp_hook_g0(G):- wots_hs(S,in_bfly(f,pp_hook_g10(G))),write(S). + +mass_gt1(O1):- into_obj(O1,O2),mass(O2,M),!,M>1. + +% Pretty printing +pp_hook_g10(G):- \+ plain_var(G), current_predicate(pp_hook_g1/1), lock_doing(in_pp_hook_g10,G,pp_hook_g1(G)). + +%as_grid_string(O,SSS):- is_grid(O),wots_vs(S,print_grid(O)), sformat(SSS,'{ ~w}',[S]). +as_grid_string(O,SSS):- wots_vs(S,show_indiv(O)), sformat(SSS,'{ ~w}',[S]). +as_pre_string(O,SS):- wots_hs(S,show_indiv(O)), strip_vspace(S,SS). + + +pretty_grid(O):- + catch( + (wots_hs(S,print_grid(O)),strip_vspace(S,SS), + ptc(orange,(format('" ~w "',[SS])))), + _,fail),!. +/* +pretty_grid(O):- + catch( + (wots_hs(S,print_grid(O)),strip_vspace(S,SS), + ptc(orange,(format('" ~w "',[SS])))), + _,(never_let_arc_portray_again,fail)). +*/ +pp_hook_g1(O):- plain_var(O), !, fail. + +pp_hook_g1(O):- attvar(O), !, is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. +pp_hook_g1(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +%pp_hook_g1(S):- term_contains_ansi(S), !, fail, write_nbsp, write_keeping_ansi_mb(S). +pp_hook_g1(rhs(O)):- write_nbsp,nl,bold_print(print(r_h_s(O))),!. + +pp_hook_g1(iz(O)):- compound(O), O = info(_),underline_print(print(izz(O))),!. +pp_hook_g1(O):- is_grid(O), /* \+ (sub_term(E,O),compound(E),E='$VAR'(_)), */ pretty_grid(O). + + +pp_hook_g1(O):- is_object(O), into_solid_grid(O,G), wots(SS,pretty_grid(G)),write(og(SS)),!. + +pp_hook_g1(shape_rep(grav,O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(shape_rep(grav,S,Q)),!. +pp_hook_g1(vals(O)):- !, writeq(vals(O)),!. +%pp_hook_g1(l2r(O)):- into_solid_grid_strings(l2r(O),Str),Str\=@=l2r(O),print_term_no_nl(Str),!. +pp_hook_g1(localpoints(O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(localpoints(S,Q)),!. +pp_hook_g1(C):- compound(C), compound_name_arguments(C,F,[O]),is_points_list(O), length(O,N),N>2, as_grid_string(O,S), compound_name_arguments(CO,F,[S]), print(CO),!. + +pp_hook_g1(O):- is_points_list(O),as_grid_string(O,S),write(S),!. +pp_hook_g1(O):- is_real_color(O), color_print(O,call(writeq(O))),!. +pp_hook_g1(O):- is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. + +pp_hook_g1(_):- \+ in_pp(ansi),!, fail. + + +pp_hook_g1(Grp):- current_predicate(pp_ilp/1),is_rule_mapping(Grp),pp_ilp(Grp),!. + +pp_hook_g1(O):- atom(O), atom_contains(O,'o_'), pp_parent([LF|_]), \+ (LF==lf;LF==objFn), + resolve_reference(O,Var), O\==Var, \+ plain_var(Var),!, + write_nbsp, writeq(O), write(' /* '), show_indiv(Var), write(' */ '). + +pp_hook_g1(O):- is_object(O),pp_no_nl(O), !. +pp_hook_g1(O):- is_group(O),pp_no_nl(O), !. + +%pp_hook_g1(change_obj(N,O1,O2,Sames,Diffs)):- showdiff_objects5(N,O1,O2,Sames,Diffs),!. + +pp_hook_g1(O):- is_vm_map(O),data_type(O,DT), writeq('..map.'(DT)),!. +pp_hook_g1(O):- is_gridoid(O),show_indiv(O), !. +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), with_tagged('h5',w_section(object,[O1, O2],pp(O))). +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(showdiff_objects(O1,O2)),!. +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(object,[O1, O2],with_tagged('h5',pp(O))). +%pp_hook_g1(O):- O = diff(A -> B), (is_gridoid(A);is_gridoid(B)),!, p_c_o('diff', [A, '-->', B]),!. +pp_hook_g1(O):- O = showdiff( O1, O2), !, showdiff(O1, O2). +%pp_hook_g1(O):- compound(O),wqs1(O), !. +pp_hook_g1(O):- \+ compound(O),fail. +pp_hook_g1(G):- '@'(pp_hook_g1a(G),user). + +pp_hook_g1a(G):- \+ current_prolog_flag(debug,true), + current_predicate(pp_hook_g2/1), lock_doing(in_pp_hook_g3,any,pp_hook_g2(G)),!. +pp_hook_g1a(G):- fch(G),!. + +%pp_hook_g2(O):- current_predicate(colorize_oterms/2),colorize_oterms(O,C), notrace(catch(fch(C),_,fail)),! . + +fch(O):- wqs1(O). +%fch(O):- pp_no_nl(O). +%fch(O):- print(O). +%fch(O):- p_p_t_no_nl(O). + +wotsq(O,Q):- wots_hs(Q,wqnl(O)). +has_goals(G):- term_attvars(G,AV),AV\==[]. +has_goals(G):- term_variables(G,TV),term_singletons(G,SV),TV\==SV. + +maybe_term_goals(Term,TermC,Goals):- + term_attvars(Term,Attvars), Attvars\==[],!, + term_variables(Term,Vars), + include(not_in(Attvars),Vars,PlainVars), + copy_term((Attvars+PlainVars+Term),(AttvarsC+PlainVarsC+TermC),Goals), + numbervars(PlainVarsC,10,Ten1,[singletons(true),attvar(skip)]), + numbervars(AttvarsC+Goals,Ten1,_Ten,[attvar(bind),singletons(false)]). + +maybe_replace_vars([],SGoals,TermC,SGoals,TermC):-!. +maybe_replace_vars([V|VarsC],SGoals,TermC,RSGoals,RTermC):- + my_partition(sub_var(V),SGoals,Withvar,WithoutVar), + Withvar=[OneGoal], + freeze(OneGoal,(OneGoal\==null,OneGoal \== @(null))), + findall(_,sub_var(V,TermC),LL),LL=[_],!, + subst([WithoutVar,TermC],V,{OneGoal},[SGoalsM,TermCM]), + maybe_replace_vars(VarsC,SGoalsM,TermCM,RSGoals,RTermC). +maybe_replace_vars([_|VarsC],SGoals,TermC,RSGoals,RTermC):- + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC). + + +src_sameish(Orig,Find):- copy_term(Orig,COrig),Find=Orig,Orig=@=COrig. + +number_vars_calc_goals(Term,SSRTermC,[1|SRSGoals]):- + term_singletons(Term,Singles), + term_attvars(Term,Vars), + copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), + notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]),_,fail)), + sort_goals(Goals,VarsC,SGoals), + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), + include(not_sub_var(RSGoals),SinglesC,KSingles), + length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), + subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), + subst_1L_p2(src_sameish,[ + {dif('$VAR'('__'),RED)}=dif(RED), + {cbg('$VAR'('__'))}=cbg], + SRTermC,SSRTermC),!. + +number_vars_calc_goals(Term,SRTermC,[2|RSGoals]):- + term_attvars(Term,AVars), + copy_term(Term+AVars,TermC+VarsC,GoalsI), + term_attvars(GoalsI,GAttvars), copy_term(GoalsI+GAttvars,_+GAttvarsC,GoalsGoals), + append(GoalsI,GoalsGoals,Goals), + append([VarsC,GAttvarsC,AVars,GAttvars],SortVars), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), + sort_goals(Goals,SortVars,SGoals), + maybe_replace_vars(SortVars,SGoals,TermC,RSGoals,RTermC), + subst_1L_p2(src_sameish,[ + {dif('$VAR'('___'),RED)}=dif(RED), + {cbg('$VAR'('___'))}=cbg], + RTermC,SRTermC),!. + +number_vars_calc_goals(Term,SSRTermC,[3|SRSGoals]):- + term_singletons(Term,Singles), + term_attvars(Term,Vars), + copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), + sort_goals(Goals,VarsC,SGoals), + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), + include(not_sub_var(RSGoals),SinglesC,KSingles), + length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), + subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), + subst(SRTermC,{cbg('_')},cbg,SSRTermC),!. + +number_vars_calc_goals(Term,TermC,[4|SGoals]):- + term_variables(Term,Vars), + term_attvars(Term,Attvars), + copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), + notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(true)]),_,fail)), + append([AttvarsC,VarsC,AttvarsC,Vars],Sorted), + sort_goals(Goals,Sorted,SGoals),!. + +number_vars_calc_goals(Term,TermC,[5|SGoals]):- + term_variables(Term,Vars), + term_attvars(Term,Attvars), + copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]), + append([AttvarsC,VarsC,Attvars,Vars],Sorted), + sort_goals(Goals,Sorted,SGoals),!. + + + +writeg(Term):- ignore( \+ notrace(catch(once(writeg0(Term);ppa(Term)),E,(pp(E),ppa(Term))))),!. + +writeg0(Term):- term_attvars(Term,Attvars),Attvars\==[],!, + must_det_ll(((number_vars_calc_goals(Term,TermC,Goals), + writeg5(TermC)),!, + if_t(Goals\==[],(nl_if_needed, + write(' goals='), call_w_pad_prev(3,az_ansi(print_tree_no_nl(Goals))))))),!. + +writeg0(Term):- \+ ground(Term), + \+ \+ must_det_ll(( + numbervars(Term,0,_Ten1,[singletons(true),attvar(skip)]), writeg5(Term))). +writeg0(Term):- writeg5(Term),!. + +writeg5(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X),write_nbsp. +writeg5(N=V):- is_simple_2x2(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). +writeg5(N=V):- is_gridoid(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). +writeg5(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad_prev(2,writeg5(V)). +writeg5(_):- write_nbsp, fail. +writeg5(V):- writeg9(V). + +writeg8(X):- is_ftVar(X),!,print(X). +writeg8(X):- var(X),!,print(X). +writeg8(X):- writeq(X). + +writeg9(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). +writeg9(V):- is_list(V),nl_if_needed,write('['),!,my_maplist(writeg5,V),write(']'). +writeg9(_):- write_nbsp,write(' \t '),fail. +writeg9(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X). +writeg9(V):- pp_no_nl(V). + + +/* +writeg5(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). +writeg5(V):- is_gridoid(V),!,call_w_pad_prev(2,writeg9(V)). +writeg5(V):- is_list(V),nl_if_needed,write('['),my_maplist(writeg5,V),write(']'). +*/ +arg1_near(Vars,Goal,Nth):- tc_arg(1,Goal,PreSort),nth1(Nth,Vars,E),E==PreSort,!. +arg1_near(_VarsC,Goal,PreSort):- tc_arg(1,Goal,PreSort),!. +arg1_near(_VarsC,Goal,Goal). + +sort_goals(Goals,VarsC,SGoals):- predsort(sort_on(arg1_near(VarsC)),Goals,SGoals). + +/* + +writeg0(Obj):- is_object(Obj),pp(Obj),!. +writeg0(O):- writeg00(O). + +writeg00(Term):- + maybe_term_goals(Term,TermC,Goals), + writeg00(TermC), call_w_pad(2,writeg00(Goals)),!. +writeg00(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad(2,writeg00(V)). +writeg00(O):- compound(O),compound_name_arguments(O,F,[A]),!,call_w_pad(2,((writeq(F),write('('),writeg3(A),write(')')))). +writeg00(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). +writeg00([H|T]):- compound(H),H=(_=_), my_maplist(writeg0,[H|T]). +writeg00([H|T]):- is_list(T),call_w_pad(2,((nl,write('['),writeg2(H),my_maplist(writeg0,T),write(']'),nl))). +%writeg0(Term):- \+ ground(Term),!, \+ \+ (numbervars(Term,99799,_,[singletons(true)]), +% subst(Term,'$VAR'('_'),'$VAR'('_____'),TermO), writeg0(TermO)). +%writeg0(V):- \+ is_list(V),!,writeq(V),nl_now. +writeg00(V):- \+ is_list(V),!,pp(V). +writeg00(X):- call_w_pad(2,pp(X)). + +writeg1(N=V):- is_gridoid(V),!,print_grid(N,V),call_w_pad(2,(my_maplist(writeg1,V))). +writeg1(X):- nl_if_needed,writeg2(X),!,write_nbsp,!. +writeg2(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). +writeg2(X):- is_ftVar(X),!,print(X). +writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(true)]),!. +%writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(false)]),!. +%writeg1(X):- nl_if_needed,writeg(X). +writeg2(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +writeg2(X):- writeq(X),!. +writeg3(X):- is_list(X),X\==[],X=[_,_|_],!,writeg(X). +writeg3(X):- writeg2(X). +*/ + +% Nov 9th, 1989 +/* +pp_hook_g1(T):- + nb_current('$portraying',Was) + -> ((member(E,Was), T==E) -> ptv2(T) ; locally(b_setval('$portraying',[T|Was]),ptv0(T))) + ; locally(b_setval('$portraying',[T]),ptv0(T)). +*/ + +%pp_hook_g(G):- compound(G),ppt(G),!. +%pp_hook_g(G):- ppt(G),!. + + +strip_vspace(S,Stripped):- string_concat(' ',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,' ',S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat('\n',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,'\n',S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat('\t',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,'\t',S),!,strip_vspace(SS,Stripped). + +strip_vspace(S,Stripped):- replace_in_string([" \n"="\n","( "="( ","(\n"="( "],S,S2),S2\==S,!,strip_vspace(S2,Stripped). +%strip_vspace(S,Stripped):- split_string(S, "", "\t\r\n", [Stripped]). +strip_vspace(S,S). + + +print_nl(P):- nl_if_needed, wots_hs(SS,pp_no_nl(P)), maybe_color(SS,P),nl_if_needed. + +color_write(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +color_write(P):- wots_hs(SS,write(P)), maybe_color(SS,P). + +write_keeping_ansi_mb(P):- is_maybe_bold(P,write_keeping_ansi(P)). + +is_maybe_bold(P):- sformat(S,'~w',[P]),atom_contains(S,'stOF'). + +is_maybe_bold(P,G):- is_maybe_bold(P),!, underline_print(bold_print(G)). +is_maybe_bold(_P,G):- call(G). + +pp_msg_color(P,C):- compound(P),pc_msg_color(P,C),!. +pp_msg_color(P,C):- must_det_ll(mesg_color(P,C)). +pc_msg_color(iz(P),C):- pp_msg_color(P,C). +pc_msg_color(link(P,_,_),C):- pp_msg_color(P,C). +pc_msg_color(link(P,_),C):- pp_msg_color(P,C). +pc_msg_color((_->P),C):- pp_msg_color(P,C). +pc_msg_color([P|_],C):- pp_msg_color(P,C). +pc_msg_color(diff(P),C):- pp_msg_color(P,C). + +%:- meta_predicate(wots_hs(0)). +%wots_hs(G):- wots_hs(S,G),write(S). + +:- meta_predicate(wots_ansi(-,0)). +wots_ansi(S,Goal):- wots(S,woto_ansi(Goal)). +:- meta_predicate(wots_ansi(-,0)). +wots_html(S,Goal):- wots(S,woto_html(Goal)). + +:- meta_predicate(woto_ansi(0)). +woto_ansi(Goal):- with_toplevel_pp(ansi,Goal). +:- meta_predicate(woto_html(0)). +woto_html(Goal):- with_toplevel_pp(http,Goal). + +:- meta_predicate(wots_hs(-,0)). +%wots_hs(S,G):- \+ wants_html,!,wots(S,G). +%wots_hs(S,G):- wots(S,G),!. +wots_hs(S,G):- wots(SS,G),notrace(remove_huge_spaces(SS,S)). +:- meta_predicate(wots_vs(-,0)). +wots_vs(OOO,G):- wots(S,G),notrace(fix_vspace(S,OOO)). + +fix_vspace(S,OOO):- + strip_vspace(S,SS), (atom_contains(SS,'\n') -> + wots_hs(SSS,(nl_now,write(' '),write(SS),nl_now));SSS=SS), + remove_huge_spaces(SSS,OOO). + + +write_tall(L):- is_list(L),!,my_maplist(write_tall,L). +write_tall(E):- wots_vs(S,wqs_c(E)),writeln(S). +write_wide(L):- is_list(L),!,my_maplist(write_wide,L). +write_wide(E):- wots_vs(S,wqs_c(E)),write(S),write_nbsp. + +p_to_br(S,SS):- fix_br_nls(S,S0), + cr_to_br(S0,SSS), + replace_in_string(['

    '='
    ','
    '='
    ','

    '=' ','

    '='
    ','

    '='
    '],SSS,SSSS), + cr_to_br(SSSS,SS). + +cr_to_br(S,SSS):- wants_html,!,cr_to_br_html(S,SSS). +cr_to_br(S,SSS):- cr_to_br_ansi(S,SSS). + +cr_to_br_html(S,SSS):- replace_in_string(['\r\n'='
    ','\r'='
    ','\n'='
    '],S,SSS). +cr_to_br_ansi(S,SSS):- replace_in_string(['
    '='\n',' '=' '],S,SSS). + +fix_br_nls(S,O):- replace_in_string( + ['
    \n'='
    ','
    \n'='
    ','

    \n'='

    ','

    \n'='

    ','

    \n'='

    ', + '\n
    '='
    ','\n
    '='
    ','\n

    '='

    ','\n

    '='

    ','\n

    '='

    '],S,O). + +remove_huge_spaces(S,O):- notrace((fix_br_nls(S,SS),!,p_to_br(SS,O))),!. +/* +remove_huge_spaces(S,O):- fix_br_nls(S,S0), + replace_in_string([' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + '\t'=' ', + ' '=' '],S0,SS),p_to_br(SS,O). +*/ + + +wqs_l(H):- \+ is_list(H),!, wqs(H). +wqs_l(H):- wqs(H). + +wqs(P):- wots_hs(SS,wqs0(P)), maybe_color(SS,P). +wqs(C,P):- ansicall(C,wqs0(P)),!. + +wqs0(X):- plain_var(X), wqs(plain_var(X)),!. +wqs0(X):- plain_var(X), !, wqs(plain_var(X)), ibreak. +wqs0(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +wqs0(C):- is_colorish(C),color_print(C,C),!. +wqs0(G):- is_vm_map(G), !, write_map(G,'wqs'). +wqs0(X):- var(X), !, get_attrs(X,AVs),!,writeq(X),write('/*{'),print(AVs),write('}*/'). +wqs0(X):- attvar(X), !, wqs(attvar(X)). +wqs0(nl_now):- !, nl_now. wqs0(X):- X=='', !. wqs0(X):- X==[], !. +wqs0(X):- is_grid(X), !, print_grid(X). +wqs0(G):- compound(G), G = call(C),callable(C),!,call(C). +wqs0([T]):- !, wqs(T). +wqs0([H|T]):- string(H), !, write(H), write_nbsp, wqs(T). +wqs0([H|T]):- compound(H),skip(_)=H, !,wqs(T). +wqs0([H|T]):- wqs(H), need_nl(H,T), wqs(T), !. +wqs0(X):- is_object(X), tersify1(X,Q), X\==Q,!, wqs(Q). +wqs0(X):- is_object(X), show_shape(X),!. +wqs0(X):- string(X), atom_contains(X,'~'), catch((sformat(S,X,[]),color_write(S)),_,fail),!. +wqs0(X):- string(X), !, color_write(X). +%wqs([H1,H2|T]):- string(H1),string(H2),!, write(H1),write_nbsp, wqs([H2|T]). +%wqs([H1|T]):- string(H1),!, write(H1), wqs(T). +%wqs([H|T]):- compound(H),!, writeq(H), wqs(T). + +wqs0(call(C)):- !, call(C). +wqs0(X):- \+ compound(X),!, write_nbsp, write(X). +wqs0(C):- compound(C),wqs1(C),!. +wqs0(C):- wqs2(C). +%wqs(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). + +wqs2(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +%wqs2(P):- wants_html,!,pp(P). + +:- thread_local(t_l:wqs_fb/1). +wqs2(X):- t_l:wqs_fb(P1),call(P1,X),!. +%wqs2(X):- with_wqs_fb(writeq,X). +wqs2(X):- with_wqs_fb(writeq,print(X)),!. +%wqs2(X):- with_wqs_fb(writeq,((write_nbsp,write_term(X,[quoted(true)])))). + +with_wqs_fb(FB,Goal):- + locally(t_l:wqs_fb(FB),Goal). + + +as_arg_str(C,S):- wots_vs(S,print(C)). + +arg_string(S):- string(S),!. +arg_string(S):- term_contains_ansi(S),!. + +wqs1(C):- \+ compound(C),!,wqs0(C). +wqs1(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). + +wqs1(format(C,N)):- catch((sformat(S,C,N),color_write(S)),_,fail),!. +wqs1(writef(C,N)):- !, writef(C,N). +wqs1(q(C)):- \+ arg_string(C),wots_hs(S,writeq(C)),color_write(S),!. +wqs1(g(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs1(C))),print(g(S)),!. +wqs1(print_ss(C)):- \+ arg_string(C), wots_vs(S,print_ss(C)),wqs1(print_ss(S)),!. +wqs1(b(C)):- \+ arg_string(C), wots_vs(S,bold_print(wqs1(C))),color_write(S). +wqs1(T):- \+ is_list(T), term_contains_ansi(T),!,write_keeping_ansi_mb(T). +wqs1(norm(C)):- writeq(norm(C)),!. +wqs1(grid_rep(norm,C)):- writeq(grid_rep(norm,C)),!. +wqs1(grid(C)):- writeq(grid(C)),!. +wqs1(rhs(RHS)):- nl_now,wqnl(rhs(RHS)),nl_now. +%wqs1(grid_ops(norm,C)):- writeq(norm(C)),!. +%norm_grid + +wqs1(pp(P)):- wots_vs(S,pp_no_nl(P)),write((S)). +wqs1(ppt(P)):- wots_vs(S,ppt_no_nl(P)),write((S)). +wqs1(wqs(P)):- wots_vs(S,wqs(P)),write((S)). +wqs1(wqs(C,P)):- wots_vs(S,wqs(P)),color_print(C,S). + +wqs1(vals(C)):- writeq(vals(C)),!. +%wqs1(colors_cc(C)):- \+ arg_string(C), as_arg_str(C,S),wqs(colorsz(S)). +wqs1(io(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs(C))),write(io(S)). + +wqs1(uc(C,W)):- !, write_nbsp, color_print(C,call(underline_print(format("\t~@",[wqs(W)])))). +wqs1(cc(C,N)):- is_color(C),!,color_print(C,call(writeq(cc(C,N)))). +wqs1(write_nav_cmd(C,N)):- !, write_nav_cmd(C,N). + +wqs1(-(C,N)):- is_color(C),!,color_print(C,call(writeq(C))), write('-'), wqs(N). +wqs1(cc(C,N)):- N\==0,attvar(C), get_attrs(C,PC), !, wqs(ccc(PC,N)). +wqs1(cc(C,N)):- N\==0,var(C), sformat(PC,"~p",[C]), !, wqs(ccc(PC,N)). +wqs1(cc(C,N)):- \+ arg_string(C), wots_hs(S,color_print(C,C)), wqs(cc(S,N)). +wqs1(color_print(C,X)):- is_color(C), !, write_nbsp, color_print(C,X). +wqs1(color_print(C,X)):- \+ plain_var(C), !, write_nbsp, color_print(C,X). +wqs1(X):- into_f_arg1(X,_,Arg),is_gridoid(Arg),area_or_len(Arg,Area),Area<5,writeq(X),!. +% wqs1(C):- callable(C), is_wqs(C),wots_vs(S,catch(C,_,fail)),write((S)). +wqs1(X):- is_gridoid_arg1(X), print_gridoid_arg1(X). + +into_f_arg1(X,F,Arg):- compound(X), compound_name_arguments(X,F,[Arg]), compound(Arg). + +is_gridoid_arg1(X):- into_f_arg1(X,_F,Arg),is_gridoid(Arg). +print_gridoid_arg1(X):- into_f_arg1(X,F,Arg),print_gridoid_arg1(F,Arg). + +print_gridoid_arg1(F,Arg):- \+ wants_html,!, wots_vs(VS,wqs(Arg)), writeq(F),write('(`'),!, print_with_pad(write(VS)),write('`)'). +print_gridoid_arg1(F,Arg):- wots_vs(VS,wqs(Arg)), + with_tag_style(span,"display: inline; white-space: nowrap",(writeq(F),write('({'),!,write(VS),write('})'))). + + +nl_needed(N):- line_position(current_output,L1),L1>=N. + +nl_now :- wants_html,!,nl_if_needed_ansi. +nl_now :- nl. + +ansi_in_pre:- current_predicate(in_pre/0),in_pre. +nl_if_needed :- ansi_main,!, format('~N'). +nl_if_needed :- ansi_in_pre,ignore((nl_needed(11),write('
    '))),!. +nl_if_needed :- wants_html,!,ignore((nl_needed(11),write('
    \n'))). +nl_if_needed :- format('~N'). +nl_if_needed_ansi :- \+ ansi_main, wants_html,!. +nl_if_needed_ansi :- nl_if_needed. + +write_nbsp:- ansi_main,!,write(' '). +write_nbsp:- wants_html,!,write(' '). +write_nbsp:- write(' '). + +is_breaker(P):- compound(P),functor(P,_,A), A>=3. + +last_f(H,F):- \+ compound(H),data_type(H,F). +last_f(H,F/A):- compound(H),!,functor(H,F,A). + +need_nl(_,_):- line_position(current_output,L1),L1<40,!. +need_nl(_,_):- line_position(current_output,L1),L1>160,!,nl_if_needed. +need_nl(H0,[H1,H2|_]):- H1\=cc(_,_), last_f(H0,F0),last_f(H1,F1),last_f(H2,F2), F0\==F1, F1==F2,!,format('~N '). +%need_nl(H0,[H1|_]):- last_f(H0,F0),last_f(H1,F1), F0==F1, !, write_nbsp. +need_nl(_,_). +/* +need_nl(_Last,[H|_]):- last_f(H,F), + once(nb_current(last_h,cc(LF,C));(LF=F,C=0)), + (LF==F-> (write_nbsp, plus(C,1,CC), nb_setval(last_h,cc(F,CC))) ; ((C>2 -> nl_now ; write_nbsp), nb_setval(last_h,cc(F,0)))). + +need_nl(_,_):- wants_html,!,write_nbsp. +%need_nl(_,_):- !,write_nbsp. +need_nl(H,[P|_]):- \+ is_breaker(H),is_breaker(P),line_position(user_output,L1),L1>80,nl_now,bformatc1('\t\t'). +need_nl(_,_):- line_position(user_output,L1),L1>160,nl_now,bformatc1('\t\t'). +need_nl(_,_). +*/ + +dash_chars:- wants_html,!,section_break. +dash_chars:- dash_chars(40),!. + +dash_chars(_):- wants_html,!,section_break. +dash_chars(H):- integer(H), dash_border(H). +dash_chars(S):- nl_if_needed,dash_chars(60,S),nl_if_needed_ansi. +dash_chars(_,_):- wants_html,!,section_break. +dash_chars(H,_):- H < 1,!. +dash_chars(H,C):- forall(between(0,H,_),bformatc1(C)). + +%section_break:- wants_html,!,write('

    '). +section_break. +%dash_uborder_no_nl_1:- line_position(current_output,0),!, bformatc1('\u00AF\u00AF\u00AF '). +%dash_uborder_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('\u00AF\u00AF\u00AF '). +dash_uborder_no_nl_1:- bformatc1('\u00AF\u00AF\u00AF '). +dash_uborder_no_nl_1:- uborder(Short,Long),!, bformatc1(Short),bformatc1(Long),write_nbsp. +dash_uborder_no_nl(1):- !, dash_uborder_no_nl_1. +dash_uborder_no_nl(Width):- WidthM1 is Width-1, uborder(Short,Long),write_nbsp, write(Short),dash_chars(WidthM1,Long),!. +dash_uborder_no_nl(Width):- WidthM1 is Width-1, write_nbsp, bformat('\u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'),!. +dash_uborder_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' \u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'). + +dash_uborder(Width):- nl_if_needed,dash_uborder_no_nl(Width),nl_now. + +uborder('-','--'):- stream_property(current_output,encoding(utf8)),!. +uborder('\u00AF','\u00AF\u00AF'):- !. %stream_property(current_output,encoding(text)). +%uborder('-','--'). + +dash_border_no_nl_1:- line_position(current_output,0),!, bformatc1(' ___ '). +dash_border_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('___ '). +dash_border_no_nl_1:- bformatc1(' ___ '). + +%dash_border_no_nl(Width):- write(''),dash_chars(Width,'_'),write_nbsp,!. + +dash_border_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' _'),dash_chars(WidthM1,'__'). + +dash_border(Width):- !, dash_border_no_nl(Width),nl_now,!. + +functor_test_color(pass,green). +functor_test_color(fail,red). +functor_test_color(warn,yellow). + +arcdbg(G):- is_vm_map(G), !, write_map(G,'arcdbg'). +arcdbg(G):- compound(G), compound_name_arity(G,F,_),functor_test_color(F,C), + wots_hs(S,print(G)),color_print(C,S),!,nl_if_needed_ansi. +arcdbg(G):- u_dmsg(G). + + +%user:portray(Grid):- ((\+ tracing, is_group(Grid),print_grid(Grid))). +%user:portray(Grid):- quietlyd((is_object(Grid),print_grid(Grid))). +n_times(N,Goal):- forall(between(1,N,_),ignore(Goal)). +banner_lines(Color):- banner_lines(Color,1). +banner_lines(Color,N):- wants_html,!,format('\n
    \n',[N,Color]),!. +banner_lines(Color,N):- + must_det_ll((nl_if_needed, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, + n_times(N,color_print(Color,'=================================================')),nl_now, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, + n_times(N,color_print(Color,'=================================================')),nl_now, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now)),!. + +print_sso(A):- ( \+ compound(A) ; \+ (sub_term(E,A), is_gridoid(E))),!, u_dmsg(print_sso(A)),!. +print_sso(A):- grid_footer(A,G,W),writeln(print_sso(W)), print_grid(W,G),!. +print_sso(A):- must_det_ll(( nl_if_needed, into_ss_string(A,SS),!, + SS = ss(L,Lst), + writeln(print_sso(l(L))), + forall(member(S,Lst),writeln(S)),nl_if_needed)),!. + +var_or_number(V):- var(V),!. +var_or_number(V):- integer(V),!. + + +find_longest_len(SL,L):- find_longest_len(SL,10,L),!. +find_longest_len([],L,L). +find_longest_len([S|SS],N,L):- print_length(S,N2),max_min(N,N2,NM,_), + find_longest_len(SS,NM,L). + +:- meta_predicate( print_with_pad(0)). +:- export( print_with_pad/1). +/*print_with_pad(Goal):- + + (line_position(current_output,O);O=0),!, + O1 is O+1, + call_w_pad(O1,Goal). +*/ +print_with_pad(Goal):-(line_position(current_output,O);O=0),!, O1 is O+1,wots(S,Goal),print_w_pad(O1,S). + + +into_s(Text,S):- notrace(catch(text_to_string(Text,S),_,fail)),!. +into_s(Obj,S):- wots_hs(S,pp(Obj)),!. + +print_w_pad(Pad,Text):- into_s(Text,S), atomics_to_string(L,'\n',S)-> my_maplist(print_w_pad0(Pad),L). +print_w_pad0(Pad,S):- nl_if_needed,dash_chars(Pad,' '), write(S). + + +:- meta_predicate(call_w_pad_prev(+,0)). +call_w_pad_prev(Pad,Goal):- wots_hs(S,Goal), print_w_pad(Pad,S). + +%call_w_pad(N,Goal):- wants_html,!,format('',[N]),call_cleanup(call(Goal),write('')). +:- meta_predicate(call_w_pad(+,0)). +call_w_pad(_N,Goal):- wants_html,!,format('',[]),call_cleanup(call(Goal),write('')). +call_w_pad(N,Goal):- nl_if_needed,wots_hs(S,dash_chars(N,' ')),!,pre_pend_each_line(S,Goal). +maybe_print_pre_pended(Out,Pre,S):- atomics_to_string(L,'\n',S), maybe_print_pre_pended_L(Out,Pre,L). +maybe_print_pre_pended_L(Out,_,[L]):- write(Out,L),!,flush_output(Out). +maybe_print_pre_pended_L(Out,Pre,[H|L]):- write(Out,H),nl(Out),!,write(Out,Pre),maybe_print_pre_pended_L(Out,Pre,L). + +%pre_pend_each_line(_,Goal):- !,ignore(Goal). +:- meta_predicate(pre_pend_each_line(+,0)). +pre_pend_each_line(Pre,Goal):- write(Pre),pre_pend_each_line0(Pre,Goal). +pre_pend_each_line0(Pre,Goal):- + current_output(Out), + current_predicate(predicate_streams:new_predicate_output_stream/2),!, + call(call,predicate_streams:new_predicate_output_stream([Data]>>maybe_print_pre_pended(Out,Pre,Data),Stream)), + arc_set_stream(Stream,tty(true)), + %arc_set_stream(Stream,buffer(false)), + %undo(ignore(catch(close(Stream),_,true))),!, + setup_call_cleanup(true, + (with_output_to_each(Stream,once(Goal)),flush_output(Stream)), + ignore(catch(close(Stream),_,true))),!. +pre_pend_each_line0(Pre,Goal):- + with_output_to_each(string(Str),Goal)*->once((maybe_print_pre_pended(current_output,Pre,Str),nl_if_needed)). + + + +end_of_file. + + + +run_source_code(ShareVars, SourceCode, Vs, QQ):- + QQ = source_buffer(SourceCode,Vs),!, + %print(term=Sourcecode -> vs=Vs), + maplist(share_vars(Vs),ShareVars), + (\+ is_list(SourceCode) + -> mort(SourceCode) + ; maplist(mort,SourceCode)). + +run_source_code(ShareVars, Vs, QQ):- + QQ = source_buffer(SourceCode,Vs),!, + %print(term=Sourcecode -> vs=Vs), + maplist(share_vars(Vs),ShareVars), + (\+ is_list(SourceCode) + -> mort(SourceCode) + ; maplist(mort,SourceCode)). + + +%vars_to_dictation([_=Value|Gotten],TIn,TOut):- is_vm_map(Value),!, vars_to_dictation(Gotten,TIn,TOut). + +vars_to_dictation([Name=Value|Gotten],TIn,TOut):- !, + my_assertion(atom(Name)), + vars_to_dictation(Gotten,TIn,TMid), + to_prop_name(Name,UName), + tio_tersify(Value,ValueT),!, + put_dict(UName,TMid,ValueT,TOut). + +vars_to_dictation([NameValue|Gotten],TIn,TOut):- !, + vars_to_dictation(Gotten,TIn,TMid), + to_prop_name(NameValue,UName), + tio_tersify(NameValue,ValueT),!, + put_dict(UName,TMid,ValueT,TOut). + +vars_to_dictation([NameValue|Gotten],TIn,TOut):- compound(NameValue),compound_name_arguments(NameValue,Name,Value),!, + vars_to_dictation([Name=Value|Gotten],TIn,TOut). + +vars_to_dictation([],T,T). + +tio_tersify(Value,ValueT):- is_grid(Value),!,ValueT=_. +tio_tersify(Value,Value). +:- export(copy_qq_//1). + +copy_qq_([]) --> []. +copy_qq_([C|Cs]) --> [C], copy_qq_(Cs). + +:- export(copy_qq//1). +muarc:copy_qq(A) --> copy_qq_(Cs), {atom_codes(A, Cs)}. + +to_prop_name(Name=_,UName):- nonvar(Name),!,to_prop_name(Name,UName). +to_prop_name(Name,UName):- compound(Name),compound_name_arity(Name,F,_),!,to_prop_name(F,UName). +to_prop_name(Name,UName):- to_case_breaks(Name,Breaks),xtis_to_atomic(Breaks,UName). + +xtis_to_atomic([xti(Str,upper),xti(StrL,lower)|Breaks],StrO):- string_upper(Str,Str), + atom_chars(Str,CharsList),append(Left,[U],CharsList), + name(S1,Left),atomic_list_concat([S1,'_',U,StrL],'',StrUL),!, + xtis_to_atomic([xti(StrUL,lower)|Breaks],StrO). +xtis_to_atomic([],''). +xtis_to_atomic([xti(Str,_)],Lower):- downcase_atom(Str,Lower). +xtis_to_atomic([XTI|Breaks],Atomic):- + xtis_to_atomic([XTI],S1),xtis_to_atomic(Breaks,S2),!,atomic_list_concat([S1,S2],'_',Atomic). + +share_vars(Vs,Name=Value):- member(VName=VValue,Vs),VName==Name,!,(Value=VValue->true;trace_or_throw(cant(share_vars(Vs,Name=Value)))). +share_vars(_,Name=_):- string_concat('_',_,Name),!. % Hide some vars +share_vars(V,Name=Value):- dmsg(missing(share_vars(V,Name=Value))),!. + + + +parse_expansions(_,Vs,Vs,Src,Src):- \+ compound(Src),!. +parse_expansions(_,Vs0,Vs,dont_include(Var),nop(dont_include(Var))):- + dont_include_var(Vs0,Vs,Var),!. +parse_expansions(F, Vs0,Vs,[Src0|Sourcecode0],[Src|Sourcecode]):- !, + parse_expansions(F, Vs0, Vs1, Src0, Src), + parse_expansions(F, Vs1, Vs, Sourcecode0, Sourcecode). +parse_expansions(FF, Vs0, Vs, Cmpd0, Cmpd):- + compound_name_arguments(Cmpd0,F,Args0), + parse_expansions([F|FF], Vs0, Vs, Args0,Args), + compound_name_arguments(Cmpd,F,Args). + +dont_include_var(Vs0,Vs,Var):- select(_=VV,Vs0,Vs),VV==Var,!. +dont_include_var(Vs,Vs,_). + +append_sets(Sets,Set):- append(Sets,List),list_to_set(List,Set). +append_sets(Set1,Set2,Set):- append(Set1,Set2,List),list_to_set(List,Set). +flatten_sets(Sets,Set):- flatten(Sets,List),list_to_set(List,Set). + +print_prop_val(N=V):- to_prop_name(N,P),format('~N\t\t'),print(P=V),nl. + + +ignore_numvars(Name='$VAR'(Name)). + + diff --git a/metta_vspace/pyswip-12-15/swi_flybase.pl b/metta_vspace/pyswip-12-15/swi_flybase.pl new file mode 100755 index 00000000..12a4e619 --- /dev/null +++ b/metta_vspace/pyswip-12-15/swi_flybase.pl @@ -0,0 +1,2 @@ + +:- ensure_loaded(flybase_main). \ No newline at end of file diff --git a/metta_vspace/pyswip-12-15/swi_support.pl b/metta_vspace/pyswip-12-15/swi_support.pl new file mode 100755 index 00000000..2efcb574 --- /dev/null +++ b/metta_vspace/pyswip-12-15/swi_support.pl @@ -0,0 +1,155 @@ + +:- set_prolog_flag(verbose_autoload, false). +:- set_prolog_flag(verbose, silent). +:- set_prolog_flag(verbose_load, silent). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +fbug(P) :- format("~N"), with_output_to(user_error,in_cmt(pp_fb(P))),!. +fbug(N=V) :- nonvar(N), !, fbdebug1(N:-V). +fbug(V) :- compound(V),functor(V,F,_A),!,fbdebug1(F:-V). +fbug(V) :- fbdebug1(debug:-V). +fbdebug1(Message) :- + % ISO Standard: flush_output/1 + flush_output(user_output), + flush_output(user_error), + catch(portray_clause(user_error,Message,[]),_,catch_ignore(format(user_error, "~n/* ~q. */~n", [Message]))), + %format(user_error, "~n/* ~p. */~n", [Message]), + flush_output(user_error). + + +swi_only(_):- is_scryer,!,fail. +swi_only(G):- call(G). +is_scryer:- \+ current_prolog_flag(libswipl,_). + + +:- create_prolog_flag(max_per_file,inf,[keep(true),access(read_write),type(term)]). +:- create_prolog_flag(max_disk_cache,inf,[keep(true),access(read_write),type(term)]). +:- create_prolog_flag(samples_per_million,inf,[keep(true),access(read_write),type(term)]). + +with_cwd(Dir,Goal):- Dir == '.',!,setup_call_cleanup(working_directory(X, X), Goal, working_directory(_,X)). +with_cwd(Dir,Goal):- setup_call_cleanup(working_directory(X, Dir), Goal, working_directory(_,X)). + +with_option([],G):-!,call(G). +with_option([H|T],G):- !, with_option(H,with_option(T,G)). +with_option(N=V,G):-!, with_option(N,V,G). +with_option(NV,G):- compound(NV), NV =..[N,V],!,with_option(N,V,G). +with_option(N,G):- with_option(N,true,G). + +with_option(N,V,G):- option_value(N,W), + setup_call_cleanup(set_option_value(N,V),G, set_option_value(N,W)). + + +was_option_value(N,V):- nb_current(N,VV), !,V=VV. +was_option_value(N,V):- current_prolog_flag(N,VV),!,V=VV. +was_option_value(N,V):- prolog_load_context(N,VV),!,V=VV. + +option_else(N,V,Else):- notrace(option_else0(N,V,Else)). +option_else0( N,V,_Else):- was_option_value(N,VV),!,VV=V. +option_else0(_N,V, Else):- !,V=Else. + +option_value(N,V):- notrace(option_value0(N,V)). +option_value0( N,V):- nonvar(V), option_value0( N,VV), !, p2m(VV,V1),p2m(V,V2),!,V1=V2.%equal_enough(V1,V2). +option_value0( N,V):- option_else0( N,V ,[]). + +p2mE(NA,NA):- \+ atom(NA),!. +p2mE(false,'False'). +p2mE(true,'True'). +p2mE(E,E). +set_option_value(N,V):- + set_option_value0(N,V). +set_option_value0(N,V):- + p2mE(V,VV),!, + catch(nb_setval(N,VV),E,fbug(E)), + catch(create_prolog_flag(N,V,[keep(false),access(read_write), type(term)]),E,fbug(E)), + catch(set_prolog_flag(N,V),E,fbug(E)),!. + +kaggle_arc:- \+ exists_directory('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/'), !. +%kaggle_arc:- !. +kaggle_arc:- + with_option(argv,['--libonly'], + with_cwd('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/', + ensure_loaded(kaggle_arc))). + +%:- ensure_loaded((read_obo2)). + +%:- kaggle_arc. + +symbol(X):- atom(X). +symbolic(X):- atomic(X). +symbol_number(S,N):- atom_number(S,N). +symbol_string(S,N):- atom_string(S,N). +symbol_chars(S,N):- atom_chars(S,N). +symbol_length(S,N):- atom_length(S,N). +symbol_concat(A,B,C):- atom_concat(A,B,C). +symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). +symbol_contains(T,TT):- atom_contains(T,TT). + +:- prolog_load_context(file, File), + absolute_file_name('../../',Dir,[relative_to(File),file_type(directory)]), + asserta(ftp_data(Dir)). + +:- prolog_load_context(file, File), + absolute_file_name('./',Dir,[relative_to(File),file_type(directory)]), + asserta(pyswip_dir(Dir)). + + +:- prolog_load_context(directory, Dir), + asserta(user:library_directory(Dir)), + asserta(pyswip_metta_dir(Dir)). + +metta_python:- ensure_loaded(library(metta_python)). +:- if( (fail, \+ current_predicate(must_det_ll/1))). +% Calls the given Goal and throws an exception if Goal fails. +% Usage: must_det_ll(+Goal). +must_det_ll(M:Goal) :- !, must_det_ll(M,Goal). +must_det_ll(Goal) :- must_det_ll(user,Goal). + +must_det_ll(_M,Goal) :- var(Goal),!,throw(var_must_det_ll(Goal)),!. +must_det_ll(M,Goal) :- var(M),!,strip_module(Goal,M,NewGoal),!,must_det_ll(M,NewGoal). +must_det_ll(M,(GoalA,GoalB)) :- !, must_det_ll(M,GoalA), must_det_ll(M,GoalB). +must_det_ll(M,(GoalA->GoalB;GoalC)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). +must_det_ll(M,(GoalA*->GoalB;GoalC)) :- !, (call_ll(M,GoalA)*-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). +must_det_ll(M,(GoalA->GoalB)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB)). +must_det_ll(_,M:Goal) :- !, must_det_ll(M,Goal). +must_det_ll(M,Goal) :- + % Call Goal, succeed with true if Goal succeeds. + M:call(Goal) -> true ; % If Goal fails, throw an exception indicating that Goal failed. + throw(failed(Goal)). + +call_ll(_M,Goal):- var(Goal),!,throw(var_call_ll(Goal)),!. +call_ll(M,Goal):- var(M),!,strip_module(Goal,M,NewGoal),!,call_ll(M,NewGoal). +call_ll(M,Goal):- M:call(Goal). + +:- endif. + + +:- if( \+ current_predicate(if_t/2)). +if_t(If,Then):- call(If)->call(Then);true. +:-endif. + +:- if( \+ current_predicate(atom_contains/2)). +atom_contains(Atom1, SubAtom) :- sub_atom(Atom1, _Before, _, _After, SubAtom). +:- endif. + +:- if( \+ current_predicate(nop/1)). +nop(_). +:- endif. + +:- if( \+ current_predicate(catch_ignore/1)). +catch_ignore(G):- ignore(catch(G,E,catch_i((nl,writeq(causes(G,E)),nl)))). +:- endif. + +:- if( \+ current_predicate(catch_i/1)). +catch_i(G):- ignore(catch(G,_,true)). +:- endif. + +:- if( \+ current_predicate(add_history1/1)). +add_history1(_). +:- endif. + +:- if( \+ current_predicate(add_history/1)). +add_history(_). +:- endif. + diff --git a/metta_vspace/pyswip/.bash_history b/metta_vspace/pyswip-want/.bash_history similarity index 100% rename from metta_vspace/pyswip/.bash_history rename to metta_vspace/pyswip-want/.bash_history diff --git a/metta_vspace/pyswip-want/chars.data b/metta_vspace/pyswip-want/chars.data new file mode 100755 index 00000000..91070ff5 --- /dev/null +++ b/metta_vspace/pyswip-want/chars.data @@ -0,0 +1,38781 @@ +:-module(lisp_code_names,[lisp_code_name/2]). +:- set_module(class(library)). +:- set_prolog_flag(double_quotes,chars). + +lisp_code_name(0,"Nul"). +lisp_code_name(1,"Soh"). +lisp_code_name(2,"Stx"). +lisp_code_name(3,"Etx"). +lisp_code_name(4,"Eot"). +lisp_code_name(5,"Enq"). +lisp_code_name(6,"Ack"). +lisp_code_name(7,"Bel"). +lisp_code_name(8,"Backspace"). +lisp_code_name(9,"Tab"). +lisp_code_name(10,"Newline"). +lisp_code_name(11,"Vt"). +lisp_code_name(12,"Page"). +lisp_code_name(13,"Return"). +lisp_code_name(14,"So"). +lisp_code_name(15,"Si"). +lisp_code_name(16,"Dle"). +lisp_code_name(17,"Dc1"). +lisp_code_name(18,"Dc2"). +lisp_code_name(19,"Dc3"). +lisp_code_name(20,"Dc4"). +lisp_code_name(21,"Nak"). +lisp_code_name(22,"Syn"). +lisp_code_name(23,"Etb"). +lisp_code_name(24,"Can"). +lisp_code_name(25,"Em"). +lisp_code_name(26,"Sub"). +lisp_code_name(27,"Esc"). +lisp_code_name(28,"Fs"). +lisp_code_name(29,"Gs"). +lisp_code_name(30,"Rs"). +lisp_code_name(31,"Us"). +lisp_code_name(32,"Space"). +lisp_code_name(33,"EXCLAMATION_MARK"). +lisp_code_name(34,"QUOTATION_MARK"). +lisp_code_name(35,"NUMBER_SIGN"). +lisp_code_name(36,"DOLLAR_SIGN"). +lisp_code_name(37,"PERCENT_SIGN"). +lisp_code_name(38,"AMPERSAND"). +lisp_code_name(39,"APOSTROPHE"). +lisp_code_name(40,"LEFT_PARENTHESIS"). +lisp_code_name(41,"RIGHT_PARENTHESIS"). +lisp_code_name(42,"ASTERISK"). +lisp_code_name(43,"PLUS_SIGN"). +lisp_code_name(44,"COMMA"). +lisp_code_name(45,"HYPHEN-MINUS"). +lisp_code_name(46,"FULL_STOP"). +lisp_code_name(47,"SOLIDUS"). +lisp_code_name(48,"DIGIT_ZERO"). +lisp_code_name(49,"DIGIT_ONE"). +lisp_code_name(50,"DIGIT_TWO"). +lisp_code_name(51,"DIGIT_THREE"). +lisp_code_name(52,"DIGIT_FOUR"). +lisp_code_name(53,"DIGIT_FIVE"). +lisp_code_name(54,"DIGIT_SIX"). +lisp_code_name(55,"DIGIT_SEVEN"). +lisp_code_name(56,"DIGIT_EIGHT"). +lisp_code_name(57,"DIGIT_NINE"). +lisp_code_name(58,"COLON"). +lisp_code_name(59,"SEMICOLON"). +lisp_code_name(60,"LESS-THAN_SIGN"). +lisp_code_name(61,"EQUALS_SIGN"). +lisp_code_name(62,"GREATER-THAN_SIGN"). +lisp_code_name(63,"QUESTION_MARK"). +lisp_code_name(64,"COMMERCIAL_AT"). +lisp_code_name(65,"LATIN_CAPITAL_LETTER_A"). +lisp_code_name(66,"LATIN_CAPITAL_LETTER_B"). +lisp_code_name(67,"LATIN_CAPITAL_LETTER_C"). +lisp_code_name(68,"LATIN_CAPITAL_LETTER_D"). +lisp_code_name(69,"LATIN_CAPITAL_LETTER_E"). +lisp_code_name(70,"LATIN_CAPITAL_LETTER_F"). +lisp_code_name(71,"LATIN_CAPITAL_LETTER_G"). +lisp_code_name(72,"LATIN_CAPITAL_LETTER_H"). +lisp_code_name(73,"LATIN_CAPITAL_LETTER_I"). +lisp_code_name(74,"LATIN_CAPITAL_LETTER_J"). +lisp_code_name(75,"LATIN_CAPITAL_LETTER_K"). +lisp_code_name(76,"LATIN_CAPITAL_LETTER_L"). +lisp_code_name(77,"LATIN_CAPITAL_LETTER_M"). +lisp_code_name(78,"LATIN_CAPITAL_LETTER_N"). +lisp_code_name(79,"LATIN_CAPITAL_LETTER_O"). +lisp_code_name(80,"LATIN_CAPITAL_LETTER_P"). +lisp_code_name(81,"LATIN_CAPITAL_LETTER_Q"). +lisp_code_name(82,"LATIN_CAPITAL_LETTER_R"). +lisp_code_name(83,"LATIN_CAPITAL_LETTER_S"). +lisp_code_name(84,"LATIN_CAPITAL_LETTER_T"). +lisp_code_name(85,"LATIN_CAPITAL_LETTER_U"). +lisp_code_name(86,"LATIN_CAPITAL_LETTER_V"). +lisp_code_name(87,"LATIN_CAPITAL_LETTER_W"). +lisp_code_name(88,"LATIN_CAPITAL_LETTER_X"). +lisp_code_name(89,"LATIN_CAPITAL_LETTER_Y"). +lisp_code_name(90,"LATIN_CAPITAL_LETTER_Z"). +lisp_code_name(91,"LEFT_SQUARE_BRACKET"). +lisp_code_name(92,"REVERSE_SOLIDUS"). +lisp_code_name(93,"RIGHT_SQUARE_BRACKET"). +lisp_code_name(94,"CIRCUMFLEX_ACCENT"). +lisp_code_name(95,"LOW_LINE"). +lisp_code_name(96,"GRAVE_ACCENT"). +lisp_code_name(97,"LATIN_SMALL_LETTER_A"). +lisp_code_name(98,"LATIN_SMALL_LETTER_B"). +lisp_code_name(99,"LATIN_SMALL_LETTER_C"). +lisp_code_name(100,"LATIN_SMALL_LETTER_D"). +lisp_code_name(101,"LATIN_SMALL_LETTER_E"). +lisp_code_name(102,"LATIN_SMALL_LETTER_F"). +lisp_code_name(103,"LATIN_SMALL_LETTER_G"). +lisp_code_name(104,"LATIN_SMALL_LETTER_H"). +lisp_code_name(105,"LATIN_SMALL_LETTER_I"). +lisp_code_name(106,"LATIN_SMALL_LETTER_J"). +lisp_code_name(107,"LATIN_SMALL_LETTER_K"). +lisp_code_name(108,"LATIN_SMALL_LETTER_L"). +lisp_code_name(109,"LATIN_SMALL_LETTER_M"). +lisp_code_name(110,"LATIN_SMALL_LETTER_N"). +lisp_code_name(111,"LATIN_SMALL_LETTER_O"). +lisp_code_name(112,"LATIN_SMALL_LETTER_P"). +lisp_code_name(113,"LATIN_SMALL_LETTER_Q"). +lisp_code_name(114,"LATIN_SMALL_LETTER_R"). +lisp_code_name(115,"LATIN_SMALL_LETTER_S"). +lisp_code_name(116,"LATIN_SMALL_LETTER_T"). +lisp_code_name(117,"LATIN_SMALL_LETTER_U"). +lisp_code_name(118,"LATIN_SMALL_LETTER_V"). +lisp_code_name(119,"LATIN_SMALL_LETTER_W"). +lisp_code_name(120,"LATIN_SMALL_LETTER_X"). +lisp_code_name(121,"LATIN_SMALL_LETTER_Y"). +lisp_code_name(122,"LATIN_SMALL_LETTER_Z"). +lisp_code_name(123,"LEFT_CURLY_BRACKET"). +lisp_code_name(124,"VERTICAL_LINE"). +lisp_code_name(125,"RIGHT_CURLY_BRACKET"). +lisp_code_name(126,"TILDE"). +lisp_code_name(127,"Rubout"). +lisp_code_name(128,"C80"). +lisp_code_name(129,"C81"). +lisp_code_name(130,"Break-Permitted"). +lisp_code_name(131,"No-Break-Permitted"). +lisp_code_name(132,"C84"). +lisp_code_name(133,"Next-Line"). +lisp_code_name(134,"Start-Selected-Area"). +lisp_code_name(135,"End-Selected-Area"). +lisp_code_name(136,"Character-Tabulation-Set"). +lisp_code_name(137,"Character-Tabulation-With-Justification"). +lisp_code_name(138,"Line-Tabulation-Set"). +lisp_code_name(139,"Partial-Line-Forward"). +lisp_code_name(140,"Partial-Line-Backward"). +lisp_code_name(141,"Reverse-Linefeed"). +lisp_code_name(142,"Single-Shift-Two"). +lisp_code_name(143,"Single-Shift-Three"). +lisp_code_name(144,"Device-Control-String"). +lisp_code_name(145,"Private-Use-One"). +lisp_code_name(146,"Private-Use-Two"). +lisp_code_name(147,"Set-Transmit-State"). +lisp_code_name(148,"Cancel-Character"). +lisp_code_name(149,"Message-Waiting"). +lisp_code_name(150,"Start-Guarded-Area"). +lisp_code_name(151,"End-Guarded-Area"). +lisp_code_name(152,"Start-String"). +lisp_code_name(153,"C99"). +lisp_code_name(154,"Single-Character-Introducer"). +lisp_code_name(155,"Control-Sequence-Introducer"). +lisp_code_name(156,"String-Terminator"). +lisp_code_name(157,"Operating-System-Command"). +lisp_code_name(158,"Privacy-Message"). +lisp_code_name(159,"Application-Program-Command"). +lisp_code_name(160,"NO-BREAK_SPACE"). +lisp_code_name(161,"INVERTED_EXCLAMATION_MARK"). +lisp_code_name(162,"CENT_SIGN"). +lisp_code_name(163,"POUND_SIGN"). +lisp_code_name(164,"CURRENCY_SIGN"). +lisp_code_name(165,"YEN_SIGN"). +lisp_code_name(166,"BROKEN_BAR"). +lisp_code_name(167,"SECTION_SIGN"). +lisp_code_name(168,"DIAERESIS"). +lisp_code_name(169,"COPYRIGHT_SIGN"). +lisp_code_name(170,"FEMININE_ORDINAL_INDICATOR"). +lisp_code_name(171,"LEFT-POINTING_DOUBLE_ANGLE_QUOTATION_MARK"). +lisp_code_name(172,"NOT_SIGN"). +lisp_code_name(173,"SOFT_HYPHEN"). +lisp_code_name(174,"REGISTERED_SIGN"). +lisp_code_name(175,"MACRON"). +lisp_code_name(176,"DEGREE_SIGN"). +lisp_code_name(177,"PLUS-MINUS_SIGN"). +lisp_code_name(178,"SUPERSCRIPT_TWO"). +lisp_code_name(179,"SUPERSCRIPT_THREE"). +lisp_code_name(180,"ACUTE_ACCENT"). +lisp_code_name(181,"MICRO_SIGN"). +lisp_code_name(182,"PILCROW_SIGN"). +lisp_code_name(183,"MIDDLE_DOT"). +lisp_code_name(184,"CEDILLA"). +lisp_code_name(185,"SUPERSCRIPT_ONE"). +lisp_code_name(186,"MASCULINE_ORDINAL_INDICATOR"). +lisp_code_name(187,"RIGHT-POINTING_DOUBLE_ANGLE_QUOTATION_MARK"). +lisp_code_name(188,"VULGAR_FRACTION_ONE_QUARTER"). +lisp_code_name(189,"VULGAR_FRACTION_ONE_HALF"). +lisp_code_name(190,"VULGAR_FRACTION_THREE_QUARTERS"). +lisp_code_name(191,"INVERTED_QUESTION_MARK"). +lisp_code_name(192,"LATIN_CAPITAL_LETTER_A_WITH_GRAVE"). +lisp_code_name(193,"LATIN_CAPITAL_LETTER_A_WITH_ACUTE"). +lisp_code_name(194,"LATIN_CAPITAL_LETTER_A_WITH_CIRCUMFLEX"). +lisp_code_name(195,"LATIN_CAPITAL_LETTER_A_WITH_TILDE"). +lisp_code_name(196,"LATIN_CAPITAL_LETTER_A_WITH_DIAERESIS"). +lisp_code_name(197,"LATIN_CAPITAL_LETTER_A_WITH_RING_ABOVE"). +lisp_code_name(198,"LATIN_CAPITAL_LETTER_AE"). +lisp_code_name(199,"LATIN_CAPITAL_LETTER_C_WITH_CEDILLA"). +lisp_code_name(200,"LATIN_CAPITAL_LETTER_E_WITH_GRAVE"). +lisp_code_name(201,"LATIN_CAPITAL_LETTER_E_WITH_ACUTE"). +lisp_code_name(202,"LATIN_CAPITAL_LETTER_E_WITH_CIRCUMFLEX"). +lisp_code_name(203,"LATIN_CAPITAL_LETTER_E_WITH_DIAERESIS"). +lisp_code_name(204,"LATIN_CAPITAL_LETTER_I_WITH_GRAVE"). +lisp_code_name(205,"LATIN_CAPITAL_LETTER_I_WITH_ACUTE"). +lisp_code_name(206,"LATIN_CAPITAL_LETTER_I_WITH_CIRCUMFLEX"). +lisp_code_name(207,"LATIN_CAPITAL_LETTER_I_WITH_DIAERESIS"). +lisp_code_name(208,"LATIN_CAPITAL_LETTER_ETH"). +lisp_code_name(209,"LATIN_CAPITAL_LETTER_N_WITH_TILDE"). +lisp_code_name(210,"LATIN_CAPITAL_LETTER_O_WITH_GRAVE"). +lisp_code_name(211,"LATIN_CAPITAL_LETTER_O_WITH_ACUTE"). +lisp_code_name(212,"LATIN_CAPITAL_LETTER_O_WITH_CIRCUMFLEX"). +lisp_code_name(213,"LATIN_CAPITAL_LETTER_O_WITH_TILDE"). +lisp_code_name(214,"LATIN_CAPITAL_LETTER_O_WITH_DIAERESIS"). +lisp_code_name(215,"MULTIPLICATION_SIGN"). +lisp_code_name(216,"LATIN_CAPITAL_LETTER_O_WITH_STROKE"). +lisp_code_name(217,"LATIN_CAPITAL_LETTER_U_WITH_GRAVE"). +lisp_code_name(218,"LATIN_CAPITAL_LETTER_U_WITH_ACUTE"). +lisp_code_name(219,"LATIN_CAPITAL_LETTER_U_WITH_CIRCUMFLEX"). +lisp_code_name(220,"LATIN_CAPITAL_LETTER_U_WITH_DIAERESIS"). +lisp_code_name(221,"LATIN_CAPITAL_LETTER_Y_WITH_ACUTE"). 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+lisp_code_name(194996,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B4"). +lisp_code_name(194997,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B5"). +lisp_code_name(194998,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B6"). +lisp_code_name(194999,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B7"). +lisp_code_name(195000,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B8"). +lisp_code_name(195001,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B9"). +lisp_code_name(195002,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BA"). +lisp_code_name(195003,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BB"). +lisp_code_name(195004,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BC"). +lisp_code_name(195005,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BD"). +lisp_code_name(195006,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BE"). +lisp_code_name(195007,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BF"). +lisp_code_name(195008,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C0"). +lisp_code_name(195009,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C1"). +lisp_code_name(195010,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C2"). +lisp_code_name(195011,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C3"). +lisp_code_name(195012,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C4"). +lisp_code_name(195013,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C5"). +lisp_code_name(195014,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C6"). +lisp_code_name(195015,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C7"). +lisp_code_name(195016,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C8"). +lisp_code_name(195017,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C9"). +lisp_code_name(195018,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CA"). +lisp_code_name(195019,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CB"). +lisp_code_name(195020,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CC"). +lisp_code_name(195021,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CD"). +lisp_code_name(195022,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CE"). +lisp_code_name(195023,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CF"). +lisp_code_name(195024,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D0"). +lisp_code_name(195025,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D1"). +lisp_code_name(195026,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D2"). +lisp_code_name(195027,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D3"). +lisp_code_name(195028,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D4"). +lisp_code_name(195029,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D5"). +lisp_code_name(195030,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D6"). +lisp_code_name(195031,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D7"). +lisp_code_name(195032,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D8"). +lisp_code_name(195033,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D9"). +lisp_code_name(195034,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DA"). +lisp_code_name(195035,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DB"). +lisp_code_name(195036,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DC"). +lisp_code_name(195037,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DD"). +lisp_code_name(195038,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DE"). +lisp_code_name(195039,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DF"). +lisp_code_name(195040,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E0"). +lisp_code_name(195041,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E1"). +lisp_code_name(195042,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E2"). +lisp_code_name(195043,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E3"). +lisp_code_name(195044,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E4"). +lisp_code_name(195045,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E5"). +lisp_code_name(195046,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E6"). +lisp_code_name(195047,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E7"). +lisp_code_name(195048,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E8"). +lisp_code_name(195049,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E9"). +lisp_code_name(195050,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EA"). +lisp_code_name(195051,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EB"). +lisp_code_name(195052,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EC"). +lisp_code_name(195053,"CJK_COMPATIBILITY_IDEOGRAPH-2F9ED"). +lisp_code_name(195054,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EE"). +lisp_code_name(195055,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EF"). +lisp_code_name(195056,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F0"). +lisp_code_name(195057,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F1"). +lisp_code_name(195058,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F2"). +lisp_code_name(195059,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F3"). +lisp_code_name(195060,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F4"). +lisp_code_name(195061,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F5"). +lisp_code_name(195062,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F6"). +lisp_code_name(195063,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F7"). +lisp_code_name(195064,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F8"). +lisp_code_name(195065,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F9"). +lisp_code_name(195066,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FA"). +lisp_code_name(195067,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FB"). +lisp_code_name(195068,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FC"). +lisp_code_name(195069,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FD"). +lisp_code_name(195070,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FE"). +lisp_code_name(195071,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FF"). +lisp_code_name(195072,"CJK_COMPATIBILITY_IDEOGRAPH-2FA00"). +lisp_code_name(195073,"CJK_COMPATIBILITY_IDEOGRAPH-2FA01"). +lisp_code_name(195074,"CJK_COMPATIBILITY_IDEOGRAPH-2FA02"). +lisp_code_name(195075,"CJK_COMPATIBILITY_IDEOGRAPH-2FA03"). +lisp_code_name(195076,"CJK_COMPATIBILITY_IDEOGRAPH-2FA04"). +lisp_code_name(195077,"CJK_COMPATIBILITY_IDEOGRAPH-2FA05"). +lisp_code_name(195078,"CJK_COMPATIBILITY_IDEOGRAPH-2FA06"). +lisp_code_name(195079,"CJK_COMPATIBILITY_IDEOGRAPH-2FA07"). +lisp_code_name(195080,"CJK_COMPATIBILITY_IDEOGRAPH-2FA08"). +lisp_code_name(195081,"CJK_COMPATIBILITY_IDEOGRAPH-2FA09"). +lisp_code_name(195082,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0A"). +lisp_code_name(195083,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0B"). +lisp_code_name(195084,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0C"). +lisp_code_name(195085,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0D"). +lisp_code_name(195086,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0E"). +lisp_code_name(195087,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0F"). +lisp_code_name(195088,"CJK_COMPATIBILITY_IDEOGRAPH-2FA10"). +lisp_code_name(195089,"CJK_COMPATIBILITY_IDEOGRAPH-2FA11"). +lisp_code_name(195090,"CJK_COMPATIBILITY_IDEOGRAPH-2FA12"). +lisp_code_name(195091,"CJK_COMPATIBILITY_IDEOGRAPH-2FA13"). +lisp_code_name(195092,"CJK_COMPATIBILITY_IDEOGRAPH-2FA14"). +lisp_code_name(195093,"CJK_COMPATIBILITY_IDEOGRAPH-2FA15"). +lisp_code_name(195094,"CJK_COMPATIBILITY_IDEOGRAPH-2FA16"). +lisp_code_name(195095,"CJK_COMPATIBILITY_IDEOGRAPH-2FA17"). +lisp_code_name(195096,"CJK_COMPATIBILITY_IDEOGRAPH-2FA18"). +lisp_code_name(195097,"CJK_COMPATIBILITY_IDEOGRAPH-2FA19"). +lisp_code_name(195098,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1A"). +lisp_code_name(195099,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1B"). +lisp_code_name(195100,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1C"). +lisp_code_name(195101,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1D"). + +:- endif. + diff --git a/metta_vspace/pyswip-want/flybase_convert.pl b/metta_vspace/pyswip-want/flybase_convert.pl new file mode 100755 index 00000000..4ce70154 --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_convert.pl @@ -0,0 +1,10 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +:- ensure_loaded(flybase_main). +:- ensure_loaded(flybase_json). +:- ensure_loaded(flybase_obo). +%:- ensure_loaded(swi_support). + + diff --git a/metta_vspace/pyswip-want/flybase_induced_types.pl b/metta_vspace/pyswip-want/flybase_induced_types.pl new file mode 100755 index 00000000..09a771ee --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_induced_types.pl @@ -0,0 +1,1647 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +/* +Finding Publications That Link Multiple Mutations +SQL Version: + +SELECT P1.title AS Publication1, M1.name AS Mutation1, P2.title AS Publication2, M2.name AS Mutation2 +FROM Mutation AS M1 +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS P1 ON MP1.publication_id = P1.id +INNER JOIN MutationPublication AS MP2 ON M1.id != MP2.mutation_id +INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id +INNER JOIN Publication AS P2 ON MP2.publication_id = P2.id AND P1.id = P2.id +WHERE M1.name != M2.name +*/ + + + +linked_mutations(Publication1, Mutation1, Publication2, Mutation2) :- + mutation(M1_id, Mutation1), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Publication1), + mutation_publication(M2_id, MP2_id), + mutation(M2_id, Mutation2), + publication(MP2_id, Publication2), + M1_id \= M2_id, + Mutation1 \= Mutation2, + MP1_id = MP2_id. + +/* + Publications Discussing Mutations in Related Genes +SQL Version: + +SELECT G1.name AS Gene1, M1.name AS Mutation1, G2.name AS Gene2, M2.name AS Mutation2, P.title +FROM Gene AS G1 +INNER JOIN Mutation AS M1 ON G1.id = M1.gene_id +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS P ON MP1.publication_id = P.id +INNER JOIN Mutation AS M2 ON P.id IN (SELECT publication_id FROM MutationPublication WHERE mutation_id = M2.id) +INNER JOIN Gene AS G2 ON M2.gene_id = G2.id AND G1.id != G2.id +WHERE G1.function = G2.function OR G1.pathway = G2.pathway +*/ + + + +related_genes_publication(Gene1, Mutation1, Gene2, Mutation2, Title) :- + gene(G1_id, Gene1, Function1, Pathway1), + mutation(M1_id, Mutation1), + mutation_gene(M1_id, G1_id), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Title), + gene(G2_id, Gene2, Function2, Pathway2), + mutation(M2_id, Mutation2), + mutation_gene(M2_id, G2_id), + mutation_publication(M2_id, MP2_id), + publication(MP2_id, Title), + G1_id \= G2_id, + (Function1 = Function2; Pathway1 = Pathway2). + +/* + + Publications Linking Phenotypic Effects of Different Mutations +SQL Version: + +SELECT M1.name AS Mutation1, P1.description AS Phenotype1, M2.name AS Mutation2, P2.description AS Phenotype2, Pub.title +FROM Mutation AS M1 +INNER JOIN Phenotype AS P1 ON M1.phenotype_id = P1.id +INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id +INNER JOIN Publication AS Pub ON MP1.publication_id = Pub.id +INNER JOIN MutationPublication AS MP2 ON Pub.id = MP2.publication_id AND MP1.mutation_id != MP2.mutation_id +INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id +INNER JOIN Phenotype AS P2 ON M2.phenotype_id = P2.id +*/ + + + +linked_phenotypes(Publication, Mutation1, Phenotype1, Mutation2, Phenotype2) :- + mutation(M1_id, Mutation1), + mutation_phenotype(M1_id, P1_id), + phenotype(P1_id, Phenotype1), + mutation_publication(M1_id, MP1_id), + publication(MP1_id, Publication), + mutation_publication(M2_id, MP2_id), + mutation(M2_id, Mutation2), + mutation_phenotype(M2_id, P2_id), + phenotype(P2_id, Phenotype2), + publication(MP2_id, Publication), + M1_id \= M2_id. + + + + +/* + + Gene Expression and Phenotypes +SQL Version: + + +SELECT Gene.name, Expression.tissue, Phenotype.description +FROM Gene +INNER JOIN Expression ON Gene.id = Expression.gene_id +INNER JOIN Phenotype ON Gene.id = Phenotype.gene_id +WHERE Expression.tissue = 'wing disc' AND Phenotype.description LIKE '%wing defects%' +*/ + + + +gene_expression_phenotype(GeneName, Tissue, PhenotypeDescription) :- + gene(GeneId, GeneName), + expression(GeneId, Tissue), + Tissue = 'wing disc', + phenotype(GeneId, PhenotypeDescription), + sub_string(PhenotypeDescription, _, _, _, 'wing defects'). + +/* + Protein-Protein Interactions +SQL Version: + +SELECT Protein1.name, Protein2.name +FROM Protein AS Protein1 +INNER JOIN Interaction ON Protein1.id = Interaction.protein1_id +INNER JOIN Protein AS Protein2 ON Interaction.protein2_id = Protein2.id +WHERE Protein1.name = 'protein_of_interest' +*/ + + + +protein_interaction(ProteinName1, ProteinName2) :- + protein(Protein1Id, ProteinName1), + ProteinName1 = 'protein_of_interest', + interaction(Protein1Id, Protein2Id), + protein(Protein2Id, ProteinName2). + +/* + Genetic Modifiers of a Mutation +SQL Version: + +SELECT ModifierGene.name, Mutation.name, ModifiedPhenotype.description +FROM Gene AS ModifierGene +INNER JOIN GeneticInteraction ON ModifierGene.id = GeneticInteraction.modifier_gene_id +INNER JOIN Mutation ON GeneticInteraction.mutation_id = Mutation.id +INNER JOIN Phenotype AS ModifiedPhenotype ON Mutation.phenotype_id = ModifiedPhenotype.id +WHERE Mutation.name = 'specific_mutation' +*/ + + + +genetic_modifier(ModifierGeneName, MutationName, PhenotypeDescription) :- + gene(ModifierGeneId, ModifierGeneName), + genetic_interaction(ModifierGeneId, MutationId), + mutation(MutationId, MutationName), + MutationName = 'specific_mutation', + phenotype(MutationId, PhenotypeDescription). + +/* +4. Gene Ontology (GO) Annotations +SQL Version: + +SELECT Gene.name, GOAnnotation.GO_term, GOAnnotation.description +FROM Gene +INNER JOIN GOAnnotation ON Gene.id = GOAnnotation.gene_id +WHERE Gene.name IN ('gene1', 'gene2', 'gene3') +*/ + + + +gene_go_annotation(GeneName, GOTerm, GODescription) :- + gene(GeneId, GeneName), + fb-member(GeneName, ['gene1', 'gene2', 'gene3']), + go_annotation(GeneId, GOTerm, GODescription). + + +/* + +SELECT Strain.name, StockCenter.name, StockCenter.location +FROM Strain +INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id +WHERE Strain.name LIKE '%desired_trait%' +ChatGPT +Translating these SQL queries to Prolog predicates involves creating a set of Prolog facts and rules that mimic the structure and logic of the SQL database and queries. Here's how each of these queries can be represented in Prolog: + + Gene Alleles and Associated Diseases + +SELECT Gene.name, Allele.name, Disease.human_disease +FROM Gene +INNER JOIN Allele ON Gene.id = Allele.gene_id +LEFT JOIN Disease ON Allele.disease_id = Disease.id +WHERE Gene.name = 'target_gene_name' +*/ + + + +gene_allele_disease(GeneName, AlleleName, HumanDisease) :- + gene(GeneId, GeneName), + GeneName = 'target_gene_name', + allele(GeneId, AlleleId, AlleleName), + ( disease(AlleleId, HumanDisease) + ; HumanDisease = 'No associated disease'). + +/* + + Transcription Factors Regulating a Gene +SQL Version: +SELECT TranscriptionFactor.name, TargetGene.name, Regulation.type +FROM Gene AS TranscriptionFactor +INNER JOIN GeneRegulation AS Regulation ON TranscriptionFactor.id = Regulation.transcription_factor_id +INNER JOIN Gene AS TargetGene ON Regulation.target_gene_id = TargetGene.id +WHERE TargetGene.name = 'specific_target_gene' +*/ + + + +transcription_factor_regulation(TranscriptionFactorName, TargetGeneName, RegulationType) :- + gene(TranscriptionFactorId, TranscriptionFactorName), + gene_regulation(TranscriptionFactorId, TargetGeneId, RegulationType), + gene(TargetGeneId, TargetGeneName), + TargetGeneName = 'specific_target_gene'. + +/* + + Publications Related to a Gene Mutation +SQL Version: + +SELECT Mutation.name, Publication.title, Publication.authors +FROM Mutation +INNER JOIN MutationPublication ON Mutation.id = MutationPublication.mutation_id +INNER JOIN Publication ON MutationPublication.publication_id = Publication.id +WHERE Mutation.name = 'specific_mutation_name' +*/ + + + +mutation_publication_info(MutationName, Title, Authors) :- + mutation(MutationId, MutationName), + MutationName = 'specific_mutation_name', + mutation_publication(MutationId, PublicationId), + publication(PublicationId, Title, Authors). + +/* + +4. RNAi Knockdown Effects on Phenotype +SQL Version: + +SELECT Gene.name, RNAiExperiment.description, Phenotype.description +FROM Gene +INNER JOIN RNAiExperiment ON Gene.id = RNAiExperiment.gene_id +INNER JOIN Phenotype ON RNAiExperiment.phenotype_id = Phenotype.id +WHERE Gene.name = 'gene_of_interest' +*/ + + + +rnai_knockdown_phenotype(GeneName, RNAiDescription, PhenotypeDescription) :- + gene(GeneId, GeneName), + GeneName = 'gene_of_interest', + rnai_experiment(GeneId, RNAiId, RNAiDescription), + phenotype(RNAiId, PhenotypeDescription). + + + +/* +5. Stock Center Information for Specific Strains + +SELECT Strain.name, StockCenter.name, StockCenter.location +FROM Strain +INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id +WHERE Strain.name LIKE '%desired_trait%' +*/ +stock_center_info(StrainName, StockCenterName, Location) :- + strain(StrainId, StrainName), + sub_string(StrainName, _, _, _, 'desired_trait'), + stock_center(StrainId, StockCenterId, StockCenterName, Location). + + + + + + + +flybase_tables([ +analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, +cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, +cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, +loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, +expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, +feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, +feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, +feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, +feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, +featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, +genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, +grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, +grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, +humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, +humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, +humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, +interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, +interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, +library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, +library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, + libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, + organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, + phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, + sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, + stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, + strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, +strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). + +/* +table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). +table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). +table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). +table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). +table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). +*//* +table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(fbgn_uniprot, 2, gene_symbol, _). +table_n_type(fbgn_uniprot, 3, 'CG', _). +table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). +table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). +table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +*/ + + +ncRNA_genes_fb_scheme( +' +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "title": "RNAcentral ncRNA object", + "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", + "id": "ncrna.json#", + "type": "object", + "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], + "additionalProperties": false, + "properties": { + "primaryId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." + }, + "taxonId": { + "$ref" : "global-id.json#/properties/globalId", + "description" : "The NCBI taxonId for the species of the gene entity." + }, + "soTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." + }, + "ecoTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The ECO Term that represents the evidence for this sequence having the given SO term." + }, + "sequence": { + "$ref": "sequence.json#properties/sequence", + "description": "The DNA sequence of this entry." + }, + "name": { + "type": "string", + "description": "The name of this sequence." + }, + "description": { + "type": "string", + "description": "An informative human readable description. If not provided then it will be generated using the name and species information." + }, + "symbol": { + "type": "string", + "description": "The symbol for this ncRNA" + }, + "symbolSynonyms": { + "type": "array", + "items": { + "type": "string" + }, + "uniqueItems": true, + "description": "A list of other symbols for the ncRNA" + }, + "version": { + "description": "The version of this sequence, if any" + }, + "gene": { + "$ref": "gene.json#" + }, + "crossReferenceIds": { + "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", + "type": "array", + "items": { + "$ref" : "global-id.json#/properties/globalId" + }, + "uniqueItems": true + }, + "genomeLocations": { + "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", + "type": "array", + "items": { + "$ref" : "location.json#" + }, + "uniqueItems": true + }, + "url": { + "type": "string", + "format": "uri", + "description": "URL to the page for this entry in the database" + }, + "externalUrl": { + "type": "string", + "format": "uri", + "description": "URL to a synopsis outside the database, like wikipedia." + }, + "secondaryStructure": { + "description": "The secondary structure in dot-bracket notation for this sequence", + "$ref": "secondary-structure.json#/properties/dot_bracket" + }, + "publications": { + "description": "List of references to associate with this sequence.", + "type": "array", + "items": { + "anyOf": [ + { "$ref": "publications.json#/properties/pubMedId" }, + { "$ref": "publications.json#/properties/doi" } + ] + }, + "uniqueItems": true + }, + "localization": { + "description": "Name of the organelle or plasmid this sequence is found in", + "enum": [ + "mitochondria", + "plastid", + "chloroplast", + "plasmid" + ] + }, + "sequenceFeatures": { + "anticodon": { + "description": "Information about the anticodon", + "$ref": "anticodon.json#" + }, + "modifications": { + "description": "List of the modifications in this sequence", + "type": "array", + "items": { + "$ref": "modification.json#" + }, + "uniqueItems": true + } + }, + "sourceModel": { + "description": "Information about the model used to find this sequence", + "$ref" : "global-id.json#/properties/globalId" + }, + "product": { + "description": "The name of the product, this should be more specific than the name of the SO term that was provided", + "type": "string" + }, + "additionalAnnotations": { + "isoType": { + "description": "The isoType of this tRNA", + "enum": [ + "Ala", + "Cys", + "Asp", + "Glu", + "Phe", + "Gly", + "His", + "Ile", + "Lys", + "Leu", + "iMet", + "Met", + "Asn", + "Pro", + "Gln", + "Arg", + "Ser", + "Thr", + "Val", + "Trp", + "Tyr" + ] + } + }, + "relatedSequences": { + "description": "Information about related sequences, like precursors or targets", + "type": "array", + "items": { + "$ref": "related-sequence.json#" + }, + "uniqueItems": true + }, + "inferredPhylogeny": { + "description": "A phylogeny that has been inferred for this sequence", + "$ref": "inferred-phylogeny.json#" + } + } +}'). + +% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference +:- dynamic maybe_corisponds/2. +:- dynamic numeric_value_p_n/3. +:- module_transparent maybe_corisponds/2. +:- module_transparent numeric_value_p_n/3. +column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). +column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). +column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). +column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). +column_names(automated_gene_summaries, [primary_FBgn, summary_text]). +column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). +column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). +column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). +column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). +column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). +column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). +column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). +column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). +column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). +column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). +column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). +column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). +column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). +column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). +column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). +column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). +column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). +column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). +column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). +column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). +column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). +column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). +column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). +column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). +column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). +column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). +column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). +column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). +column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). +column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). +column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred_nr(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 3, synonym/6)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(description, 6, stocks/7)). +maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(uniquename, 5, stocks/7)). +maybe_corisponds('ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4), 'ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Based_on_orthology_with_(symbol)', 10, disease_model_annotations/12), 'ConceptMapFn'('Human_gene_symbol', 5, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_name', 3, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_group/7), 'ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_symbol', 2, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBal', 1, fbal_to_fbgn/4), 'ConceptMapFn'('FBal', 7, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBal', 7, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, synonym/6)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 1, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('FBpp', 3, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBpp', 10, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('FBtr', 2, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBtr', 8, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(species, 2, organism_list/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(ortholog_gene_symbol, 3, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'('Genetic_map_position', 2, 'cyto-genetic-seq'/4), 'ConceptMapFn'(recombination_loc, 4, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('HGNC', 3, dmel_human_orthologs_disease/8), 'ConceptMapFn'('HGNC', 9, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'('Summary', 4, best_gene_summary/4), 'ConceptMapFn'(gene_snapshot_text, 5, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'(allele_symbol, 1, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 7, genotype_phenotype/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 1, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 2, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PMID', 2, fbrf_pmid_pmcid_doi/7)). +maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PubMed', 4, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). +maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'(current_fullname, 4, synonym/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 1, fbgn_uniprot/4)). +maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('EST_accession', 6, cDNA_clone/6)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(accession, 4, genomic_clone/4)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(clone_name, 3, cDNA_clone/6)). +maybe_corisponds('ConceptMapFn'(_, 4, fbgn_uniprot/4), 'ConceptMapFn'(_, 6, fbgn_NAseq_Uniprot/9)). +maybe_corisponds('ConceptMapFn'(_, 5, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 4, fbgn_uniprot/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). +maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(description, 6, stocks/7)). +maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(uniquename, 5, stocks/7)). +maybe_corisponds('ConceptMapFn'(cytogenetic_loc, 5, gene_map_table/6), 'ConceptMapFn'(estimated_cytogenetic_location, 6, insertion_mapping/7)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). +maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170)). +maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). +maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(identical_protein, 4, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11)). +maybe_corisponds('ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(representative_protein, 3, dmel_unique_protein_isoforms/4)). +maybe_corisponds('ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). +numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). +numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). +numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). +numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). +numeric_value_p_n(dmel_paralogs, 5, 'Strand'). +numeric_value_p_n(entity_publication, 4, 'PubMed'). +numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). +numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). +numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). +numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). +numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). +numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). +numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). +numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). +numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). +numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). +numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). +numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). +numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). +numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). +numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). +numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). +numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). +numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). +numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). +numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). +numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). +numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). +numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). +numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). +numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). +numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). +numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). +numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). +numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). +numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). +numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). +numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). +numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). +numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). +numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). +numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). +numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). +numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). +numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). +numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). +numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). +numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). +numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). +numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). +numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). +numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). +numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). +numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). +numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). +numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). +numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). +numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). +numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). +numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). +numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). +numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). +numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). +numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). +numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). +numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). +numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). +numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). +numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). +numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). +numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). +numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). +numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). +numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). +numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). +numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). +numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). +numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). +numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). +numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). +numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). +numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). +numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). +numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). +numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). +numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). +numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). +numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). +numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). +numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). +numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). +numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). +numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). +numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). +numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). +numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). +numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). +numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). +numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). +numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). +numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). +numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). +numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). +numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). +numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). +numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). +numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). +numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). +numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). +numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). +numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). +numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). +numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). +numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). +numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). +numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). +numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). +numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). +numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). +numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). +numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). +numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). +numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). +numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). +numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). +numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). +numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). +numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). +numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). +numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). +numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). +numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). +numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). +numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). +numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). +numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). +numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). +numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). +numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). +numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). +numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). +numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). +numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). +numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). +numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). +numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). +numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). +numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). +numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). +numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). +numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). +numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). +numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). +numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). +numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). +numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). +numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). +numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). +numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). +numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). +numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). +numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). +numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). +numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). +numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). +numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). +numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). +numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). +numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). +numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). +numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). +numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). +numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). +numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). +numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). +numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). +numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). +numeric_value_p_n(gene_snapshots, 4, datestamp). +numeric_value_p_n(insertion_mapping, 5, orientation). +numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). +numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). +table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). +table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). +table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). +table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). +table_n_type('Dmel_enzyme', 1, gene_group_id, _). +table_n_type('Dmel_enzyme', 10, gene_EC_number, _). +table_n_type('Dmel_enzyme', 11, gene_EC_name, _). +table_n_type('Dmel_enzyme', 2, gene_group_name, _). +table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). +table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). +table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). +table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). +table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). +table_n_type('Dmel_enzyme', 8, gene_symbol, _). +table_n_type('Dmel_enzyme', 9, gene_name, _). +table_n_type(allele_genetic_interactions, 1, allele_symbol, _). +table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). +table_n_type(allele_genetic_interactions, 3, interaction, _). +table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). +table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). +table_n_type(automated_gene_summaries, 2, summary_text, _). +table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). +table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). +table_n_type(best_gene_summary, 3, 'Summary_Source', _). +table_n_type(best_gene_summary, 4, 'Summary', _). +table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). +table_n_type(cDNA_clone, 2, organism_abbreviation, _). +table_n_type(cDNA_clone, 3, clone_name, _). +table_n_type(cDNA_clone, 4, dataset_metadata_name, _). +table_n_type(cDNA_clone, 5, cDNA_accession, _). +table_n_type(cDNA_clone, 6, 'EST_accession', _). +table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). +table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). +table_n_type(dataset_metadata, 3, 'Item_ID', _). +table_n_type(dataset_metadata, 4, 'Item_Name', _). +table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). +table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). +table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). +table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). +table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). +table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). +table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). +table_n_type(disease_model_annotations, 5, 'DO', _). +table_n_type(disease_model_annotations, 6, 'DO_term', _). +table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). +table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). +table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). +table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). +table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). +table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). +table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). +table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). +table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). +table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). +table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). +table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). +table_n_type(dmel_paralogs, 4, 'Location', _). +table_n_type(dmel_paralogs, 5, 'Strand', _). +table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). +table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). +table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). +table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). +table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). +table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). +table_n_type(entity_publication, 1, entity_id, _). +table_n_type(entity_publication, 2, entity_name, _). +table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). +table_n_type(entity_publication, 4, 'PubMed', _). +table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). +table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). +table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). +table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). +table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). +table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). +table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). +table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). +table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). +table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). +table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). +table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). +table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). +table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). +table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). +table_n_type(fbgn_gleanr, 2, gene_symbol, _). +table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_gleanr, 4, 'GLEANR', _). +table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). +table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). +table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). +table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). +table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). +table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). +table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). +table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). +table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). +table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). +table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). +table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). +table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). +table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). +table_n_type(gene_group, 1, 'FB_group', 'FBgg'). +table_n_type(gene_group, 2, 'FB_group_symbol', _). +table_n_type(gene_group, 3, 'FB_group_name', _). +table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). +table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_map_table, 1, organism_abbreviation, _). +table_n_type(gene_map_table, 2, current_symbol, _). +table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). +table_n_type(gene_map_table, 4, recombination_loc, _). +table_n_type(gene_map_table, 5, cytogenetic_loc, _). +table_n_type(gene_map_table, 6, sequence_loc, _). +table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). +table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). +table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). +table_n_type(gene_rpkm_matrix, 4, gene_type, _). +table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). +table_n_type(gene_rpkm_report, 1, 'Release_ID', _). +table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). +table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). +table_n_type(gene_rpkm_report, 12, 'Count_used', _). +table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). +table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). +table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). +table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). +table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). +table_n_type(gene_rpkm_report, 9, 'Bin_value', _). +table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). +table_n_type(gene_snapshots, 2, 'GeneSymbol', _). +table_n_type(gene_snapshots, 3, 'GeneName', _). +table_n_type(gene_snapshots, 4, datestamp, _). +table_n_type(gene_snapshots, 5, gene_snapshot_text, _). +table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). +table_n_type(genomic_clone, 2, organism_abbreviation, _). +table_n_type(genomic_clone, 3, clone_name, _). +table_n_type(genomic_clone, 4, accession, _). +table_n_type(insertion_mapping, 1, insertion_symbol, _). +table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). +table_n_type(insertion_mapping, 3, genomic_location, _). +table_n_type(insertion_mapping, 4, range, _). +table_n_type(insertion_mapping, 5, orientation, _). +table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). +table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). +table_n_type(organism_list, 1, genus, _). +table_n_type(organism_list, 2, species, _). +table_n_type(organism_list, 3, abbreviation, _). +table_n_type(organism_list, 4, common_name, _). +table_n_type(organism_list, 5, 'NCBI_taxon', _). +table_n_type(organism_list, 6, 'drosophilid?', _). +table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). +table_n_type(pathway_group, 2, 'FB_group_symbol', _). +table_n_type(pathway_group, 3, 'FB_group_name', _). +table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). +table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). +table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). +table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). +table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). +table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). +table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). +table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). +table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). +table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). +table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). +table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). +table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). +table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). +table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). +table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). +table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). +table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). +table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). +table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). +table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). +table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). +table_n_type(physical_interactions_mitab, 36, 'Negative', _). +table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). +table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). +table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). +table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). +table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). +table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). +table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). +table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). +table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). +table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). +table_n_type(physical_interactions_mitab, 9, 'Publication', _). +table_n_type(stocks, 1, stock_id, 'FBst'). +table_n_type(stocks, 2, dbxref_id, _). +table_n_type(stocks, 3, organism_id, _). +table_n_type(stocks, 4, name, _). +table_n_type(stocks, 5, uniquename, _). +table_n_type(stocks, 6, description, _). +table_n_type(stocks, 7, type_id, _). +table_n_type(stocks, 8, is_obsolete, _). +table_n_type(synonym, 1, primary_FBid, 'FBgn'). +table_n_type(synonym, 2, organism_abbreviation, _). +table_n_type(synonym, 3, current_symbol, _). +table_n_type(synonym, 4, current_fullname, _). +table_n_type(synonym, 5, fullname_synonym, _). +table_n_type(synonym, 6, symbol_synonym, _). diff --git a/metta_vspace/pyswip-want/flybase_json.pl b/metta_vspace/pyswip-want/flybase_json.pl new file mode 100755 index 00000000..efb27c25 --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_json.pl @@ -0,0 +1,640 @@ + +% ```prolog + +:- use_module(library(logicmoo_utils)). + + +% facts for creating predcatres +extracted_predicate(transposon, [primaryId, symbol, sequence, url, taxonId, soTermId]). +extracted_predicate(transposon_publications, [primaryId, publications]). +extracted_predicate(transposon_synonyms, [primaryId, symbolSynonyms]). +extracted_predicate(transposon_cross_references, [primaryId, crossReferenceIds]). + +extracted_predicate(gene, [primaryId, + gene_geneId, gene_symbol, gene_url, gene_locusTag, gene_name]). + + +extracted_predicate(N,[gene_geneId,N]):- + member(M,[symbol, url, locusTag, name, synonyms]), atom_concat('gene_',M,N). + + +extracted_predicate(exon_locations, + [primaryId, + genomeLocations_assembly, + genomeLocations_gca_accession, + exons_INSDC_accession, exons_chromosome, exons_strand, + exons_startPosition, + exons_endPosition]). + +extracted_predicate(relatedSequences,[primaryId,relatedSequences_sequenceId, + relatedSequences_relationship]). + +extracted_predicate(gene_synonyms, [gene_geneId, gene_synonyms]). +%extracted_predicate(exon, [primaryId, geneId, 'INSDC_accession', chromosome, strand, startPosition, endPosition]). +extracted_predicate(metadata, [dataProvider, schemaVersion, release, genomicCoordinateSystem, dateProduced]). +%extracted_predicate(exon_locations, [ assembly, chromosome, strand, startPosition, endPosition]). + +extracted_predicate(N,[fbid,M]):- + member(M,[transposons, common_terms, major_stages, major_tissues, name, + pubs, rex_gene, stocks, expression_desc_text, images]), atom_concat('allele_',M,N). +extracted_predicate(allele_image,[fbid,images,images_imageDescription, + images_publicationId, images_pubFigure, images_permission]). +extracted_predicate(allele_image2, + [fbid,images, + imageDescription, publicationId, + pubFigure, permission]). +extracted_predicate(allele_image3, + [fbid, images_imageDescription, + images_publicationId, + images_pubFigure, images_permission]). + +wdmsg_json(G):- nop(fbug(G)). +note_doing(P):- wdmsg_json(P),!,call(user:P). +assert_JSON(P):- note_doing(assert_OBO(P)). + +:- ensure_loaded(flybase_main). +:- ensure_loaded(flybase_obo). + +%:- listing(assert_OBO/1). + +:- dynamic json_kv/2. + +% Base case: an empty curly structure. +mapcurly_or_list(_, {}):-!. +mapcurly_or_list(_, []):-!. +mapcurly_or_list(Pred, [H|T]) :- !, call(Pred, H), mapcurly_or_list(Pred, T). +mapcurly_or_list(Pred, {H,T}):- !, call(Pred, H), mapcurly_or_list(Pred, T). +mapcurly_or_list(Pred, {H}) :- !, call(Pred, H). + + +simple_first(R,_=AA,_=BB):-!, simple_first(R,AA,BB). +simple_first('<',AA,BB):- BB=json(_),AA\=json(_),!. +simple_first('>',AA,BB):- AA=json(_),BB\=json(_),!. +simple_first(R,AA,BB):-!, compare(R,AA,BB). + +prefix_key([O|_],Kee,Key):- atom(O), !, + prefix_key(O,Kee,Key). +prefix_key(O,Kee,Key) :- atom(O), + O\==Kee, O\==data,atomic_list_concat([O,'_',Kee],Key),!. +prefix_key(_,Key,Key). + + + +:- use_module(library(http/json)). + +load_flybase_json(_Fn,File):- + process_json_file(File). + +process_json_file(File):- atom_concat(File,'.metta_x',MXFile),process_json_file(File,MXFile). +process_json_file(_File,MXFile):- fail, exists_file(MXFile),!,process_metta_x_file(MXFile). +process_json_file(File, MXFile):- fail, exists_file(File),!, + setup_call_cleanup( + open(MXFile,write,Strm,[]), + setup_call_cleanup( + set_stream(Strm,alias(metta_x_output)), + with_option(make_metta_x,'True',process_json_file_direct(File)), + set_stream(current_output,alias(metta_x_output))), + close(Strm)), + remove_duplicates(MXFile), + process_metta_x_file(MXFile). +process_json_file(File, _):- process_json_file_direct(File),!. +process_json_file(File, MXFile):- + throw(process_json_file(File, MXFile)). + + +process_json_file_direct(File):- + setup_call_cleanup( + open(File, read, Stream,[encoding(utf8)]), + json_read(Stream, JSONDict), + close(Stream)), + process_json([],JSONDict). + +process_json(JsonString):- process_json([],JsonString),!. + + + + +process_json(O,JsonString) :- atomic(JsonString), !, + atom_json_term(JsonString, Json, []), process_json(O,Json). +process_json(O,json(Values)) :- !, process_json(O,Values). +process_json(O,K=json(Values)) :- !, process_json([K|O],Values). +process_json(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). +process_json(O,Values) :- with_json1(O,Values),!. + +with_json1(O,K=Values) :- K==driver,!, with_json1(O,Values). +with_json1(O,K=Values) :-!, with_json1([K|O],Values). +with_json1(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). + +with_json1(O,json([driver=json(Values0)])) :- !,with_json2(O,Values0),!. +with_json1(O,json(Values0)) :- is_list(Values0),!,with_json2(O,Values0),!. +with_json1(O,Val):- fbug(error(O=Val)),!. + +with_json2([metaData],_Values0):-!. +with_json2(O,Values):- + retractall(seen_arg(_,_)), + with_json3(O,Values), + ignore((seen_arg(_,_), + fbug(Values), + listing(seen_arg/2))). + +with_json3(O,Values0):- + retractall(json_kv(_,_)), + with_json4(O,Values0), + retractall(json_kv(_,_)),!. + +with_json4(O,[json(Values)]):- !, with_json4(O,Values). +with_json4(O,json(Values)):- !, with_json4(O,Values). +with_json4(O,Values0):- + predsort(simple_first,Values0,Values), + wdmsg_json(O==Values), + ignore(maplist(with_entry(O,assert),Values)). + + +with_entry(O,AR, Key=Value):-!, with_kv([Key|O],AR,Key,Value). +%with_entry(O,assert,JSON) :- !, process_json(O,JSON). +with_entry(O,AR,JSON):- fbug(error_with_entry(O,AR,JSON)). + +uses_id_subprops(images). +key_can_nv(M):- +member(M,[major_stages, major_tissues, name, rex_gene, insertions,transposons, + %expression_desc_text, images, + pubs, stocks]). + +is_field(Field):- extracted_predicate(_,List), \+ \+ member(Field,List),!. + +with_kv_maybe_more(_O,_AR,_Key,json([])):-!. +with_kv_maybe_more(O,AR,Key,Do):- with_kv(O,AR,Key,Do),!. + + +assert_id_about(O,Key,ID,NVAboutID):- + with_json4([Key|O],[Key=ID|NVAboutID]). + + %images= json( [ 'FBal0040476_1.jpg'= json( [ imageDescription='GAL4[Bx-MS1096].jpg', + +with_kv(O,AR,Key,json([ID=json(NVAboutID)|More])):- uses_id_subprops(Key), + %wdmsg_json(cr1(Key)=ID), + atom(ID),!, + decl_type(ID,Key), + with_kv(O,AR,Key,ID), + assert_id_about(O,Key,ID,NVAboutID), + with_kv_maybe_more(O,AR,Key,json(More)). + +with_kv(O,AR,Key,json([ID=Value|More])):- key_can_nv(Key), + atom(Value), + % prefix_key(O,ID,Field), \+ is_field(Field),!, + %prefix_key(O,Value,VField), \+ is_field(VField),!, + decl_type(ID,Key), + with_kv(O,AR,Key,ID), + %atom_concat(Key,'_name',Pred), + %Pred = object_name, + assert_JSON([name,ID,Value]), + with_kv_maybe_more(O,AR,Key,json(More)). + +with_kv(O,AR,OK,Key=Values):- !, with_kv([OK|O],AR,Key,Values). +with_kv(O,AR,Key,json(Values)):- !, with_kv(O,AR,Key,Values). +with_kv(O,AR,Key,Value):- is_list(Value),Value\==[],!, + maplist(with_kv(O,AR,Key),Value). +with_kv(O,AR,Kee,Value):- + prefix_key(O,Kee,Key), + retractall(json_kv(Key,_)), + KV = json_kv(Key,Value), + decl_seen(Value,Key), + Do =.. [AR,KV], + call(Do), + ignore((AR==assert, + %wdmsg_json(cr(Key)=Value), + check_ready(Key))). + +check_ready(Key):- + forall((extracted_predicate(P,List),memberchk(Key,List)), + (length(List,Len), + ignore((findall(Arg,(member(K,List),json_kv(K,Arg)),ArgList), + length(ArgList,Len), + Fact = [P|ArgList], + assert_JSON(Fact), + maplist(decl_type,ArgList,List))))). +% Rows 937,381,148 +:- dynamic(arg_typed/2). +:- dynamic(seen_arg/2). + +decl_type(Arg,Type):- retractall(seen_arg(Arg,_)),arg_typed(Arg,Type),wdmsg_json(arg_typed(Arg,Type)),!. +decl_type(Arg,Type):- assert(arg_typed(Arg,Type)),!,assert_JSON([Type,Arg]). +decl_seen(Arg,_):- seen_arg(Arg,_),!. +decl_seen(Arg,_):- arg_typed(Arg,_),!. +decl_seen(Arg,Type):- assert(seen_arg(Arg,Type)),!. + + + + +err +:- process_json(json([metaData= json( [ dataProvider='FlyBase', + publications=['PMID:35266522'], schemaVersion='0.4.0',release=fb_2023_04, + genomicCoordinateSystem='1-start, fully-closed', + dateProduced='2023-07-25T03:20:14+00:00']), + data= [ json( [ primaryId='FBtr0070001', + symbol='tRNA:Pro-CGG-1-1-RA', + sequence='GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC', + url='http://flybase.org/reports/FBtr0070001.html', + symbolSynonyms=['CR32826-RA','tRNA:CR32826-RA'], taxonId='NCBITaxon:7227',soTermId='SO:0000253', + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=20025099,endPosition=20025170])]])], + gene= json( [ geneId='FBgn0052826', + symbol='tRNA:Pro-CGG-1-1', + url='http://flybase.org/reports/FBgn0052826.html', + locusTag='Dmel_CR32826', + synonyms=['tRNA:P:CGG:AE002611'], + name='transfer RNA:Proline-CGG 1-1']), + publications=['PMID:26673694']]), + json( [ primaryId='FBtr0070292', + symbol='snoRNA:M-RA', + sequence='AATTCAATGATTTCAACTTATTCTAATACACAC', + url='http://flybase.org/reports/FBtr0070292.html', taxonId='NCBITaxon:7227',soTermId='SO:0000275', + crossReferenceIds=['REFSEQ:NR_002093.1'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), + startPosition=1482492,endPosition=1482590])]])], + gene= json( [ geneId='FBgn0044508', + symbol='snoRNA:M', + url='http://flybase.org/reports/FBgn0044508.html', + locusTag='Dmel_CR32807', synonyms=['CR32807'],name='snoRNA:M'])]), + json( [ primaryId='FBtr0308931', + symbol='lncRNA:CR33218-RC', + sequence='ACGAAATCAATAAACATTTGTACCTTT', + url='http://flybase.org/reports/FBtr0308931.html', + symbolSynonyms=['CR33218-RC'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', + crossReferenceIds=['REFSEQ:NR_047742.1'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=2330159,endPosition=2330355]), + json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), + startPosition=2330413,endPosition=2330826])]])], + gene= json( [ geneId='FBgn0053218', + symbol='lncRNA:CR33218', + url='http://flybase.org/reports/FBgn0053218.html', + locusTag='Dmel_CR33218', + synonyms=['CG2854','CG33218','CR33218','CT9762'], + name='long non-coding RNA:CR33218'])]), + json( [ primaryId='FBtr0070634', symbol='lncRNA:roX1-RA',sequence='TTGTAGAACAATTACTATA', + url='http://flybase.org/reports/FBtr0070634.html', + symbolSynonyms=['roX1-RA','roX1-RA....'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', + crossReferenceIds=['REFSEQ:NR_002098.2'], + genomeLocations= [ json( [ assembly='R6', + gca_accession='GCA_000001215.4', + exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), + startPosition=3858940,endPosition=3862697])]])], + gene= json( [ geneId='FBgn0019661', + symbol='lncRNA:roX1', + url='http://flybase.org/reports/FBgn0019661.html', + locusTag='Dmel_CR32777', + synonyms= [ 'BcDNA:GH10432', 'CR32777','EG:EG0002.2','RoX1', + 'chrX:3706836..3706970',rox1], + name='long non-coding RNA on the X 1']), + publications=['PMID:10445033','PMID:12446910','PMID:9038336','PMID:9038337']])] ])). + + + + +err +:- process_json([],' +{ + "metaData": { + "dataProvider": "FlyBase", + "publications": [ + "PMID:35266522" + ], + "schemaVersion": "0.4.0", + "release": "fb_2023_04", + "genomicCoordinateSystem": "1-start, fully-closed", + "dateProduced": "2023-07-25T03:20:14+00:00" + }, + "data": [ + { + "primaryId": "FBtr0070001", + "symbol": "tRNA:Pro-CGG-1-1-RA", + "sequence": "GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC", + "url": "http://flybase.org/reports/FBtr0070001.html", + "symbolSynonyms": [ + "CR32826-RA", + "tRNA:CR32826-RA" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0000253", + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 20025099, + "endPosition": 20025170 + } + ] + } + ], + "gene": { + "geneId": "FBgn0052826", + "symbol": "tRNA:Pro-CGG-1-1", + "url": "http://flybase.org/reports/FBgn0052826.html", + "locusTag": "Dmel_CR32826", + "synonyms": [ + + "tRNA:P:CGG:AE002611" + ], + "name": "transfer RNA:Proline-CGG 1-1" + }, + "publications": [ + "PMID:26673694" + ] + }, + { + "primaryId": "FBtr0070292", + "symbol": "snoRNA:M-RA", + "sequence": "AATTCAATGATTTCAACTTATTCTAATACACAC", + "url": "http://flybase.org/reports/FBtr0070292.html", + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0000275", + "crossReferenceIds": [ + "REFSEQ:NR_002093.1" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "-", + "startPosition": 1482492, + "endPosition": 1482590 + } + ] + } + ], + "gene": { + "geneId": "FBgn0044508", + "symbol": "snoRNA:M", + "url": "http://flybase.org/reports/FBgn0044508.html", + "locusTag": "Dmel_CR32807", + "synonyms": [ + "CR32807" + ], + "name": "snoRNA:M" + } + }, + { + "primaryId": "FBtr0308931", + "symbol": "lncRNA:CR33218-RC", + "sequence": "ACGAAATCAATAAACATTTGTACCTTT", + "url": "http://flybase.org/reports/FBtr0308931.html", + "symbolSynonyms": [ + "CR33218-RC" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0001877", + "crossReferenceIds": [ + "REFSEQ:NR_047742.1" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 2330159, + "endPosition": 2330355 + }, + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "+", + "startPosition": 2330413, + "endPosition": 2330826 + } + ] + } + ], + "gene": { + "geneId": "FBgn0053218", + "symbol": "lncRNA:CR33218", + "url": "http://flybase.org/reports/FBgn0053218.html", + "locusTag": "Dmel_CR33218", + "synonyms": [ + "CG2854", + "CG33218", + "CR33218", + "CT9762" + ], + "name": "long non-coding RNA:CR33218" + } + }, + { + "primaryId": "FBtr0070634", + "symbol": "lncRNA:roX1-RA", + "sequence": "TTGTAGAACAATTACTATA", + "url": "http://flybase.org/reports/FBtr0070634.html", + "symbolSynonyms": [ + "roX1-RA" + ], + "taxonId": "NCBITaxon:7227", + "soTermId": "SO:0001877", + "crossReferenceIds": [ + "REFSEQ:NR_002098.2" + ], + "genomeLocations": [ + { + "assembly": "R6", + "gca_accession": "GCA_000001215.4", + "exons": [ + { + "INSDC_accession": "AE014298.5", + "chromosome": "X", + "strand": "-", + "startPosition": 3858940, + "endPosition": 3862697 + } + ] + } + ], + "gene": { + "geneId": "FBgn0019661", + "symbol": "lncRNA:roX1", + "url": "http://flybase.org/reports/FBgn0019661.html", + "locusTag": "Dmel_CR32777", + "synonyms": [ + "BcDNA:GH10432", + "CR32777", + "EG:EG0002.2", + "RoX1", + "chrX:3706836..3706970", + "rox1" + ], + "name": "long non-coding RNA on the X 1" + }, + "publications": [ + "PMID:10445033", + "PMID:12446910", + "PMID:9038336", + "PMID:9038337" + ] + } + ] + } +}'). + +err +:- process_json([],' +{ + "metaData": { + "dataProvider": "FlyBase", + "title": "Frequently Used GAL4 Table", + "dateProduced": "2023-07-24T23:20:12-04:00", + "databaseRelease": "2023_04", + "annotationRelease": "R6.53" + }, + "data": [ + + {"driver": { + "name": "Scer\\GAL4dpp.blk1", + "fbid": "FBal0040480", + "images": { + "FBal0040480_1.png": { + "imageDescription": "GAL4[dpp.blk1].png", + "publicationId": "FBrf0218242", + "pubFigure": "Figure 5A", + "permission": "" + } + }, + "pubs": { + "FBrf0074522": "Staehling-Hampton et al., 1994, Cell Growth Diffn 5(6): 585--593", + "FBrf0076140": "Wilder and Perrimon, 1995, Development 121(2): 477--488", + "FBrf0084454": "Treisman and Rubin, 1995, Development 121(11): 3519--3527", + "FBrf0086426": "Grimm and Pflugfelder, 1996, Science 271(5255): 1601--1604", + "FBrf0087557": "Lecuit et al., 1996, Nature 381(6581): 387--393", + "FBrf0087626": "Nellen et al., 1996, Cell 85(3): 357--368", + "FBrf0087630": "Ng et al., 1996, Nature 381(6580): 316--318", + "FBrf0088035": "Burke and Basler, 1996, Development 122(7): 2261--2269", + "FBrf0088295": "Kim et al., 1996, Nature 382(6587): 133--138", + "FBrf0089604": "Brook and Cohen, 1996, Science 273(5280): 1373--1377", + "FBrf0089753": "Morimura et al., 1996, Dev. Biol. 177(1): 136--151", + "FBrf0091093": "Johnston and Schubiger, 1996, Development 122(11): 3519--3529", + "FBrf0091111": "Leevers et al., 1996, EMBO J. 15(23): 6584--6594", + "FBrf0091167": "Shen and Mardon, 1997, Development 124(1): 45--52", + "FBrf0091298": "Gonzalez-Crespo and Morata, 1996, Development 122(12): 3921--3928", + "FBrf0091412": "Theisen et al., 1996, Development 122(12): 3939--3948", + "FBrf0092493": "Chanut and Heberlein, 1997, Development 124(2): 559--567", + "FBrf0092641": "Neumann and Cohen, 1997, Development 124(4): 871--880", + "FBrf0093060": "Aplin and Kaufman, 1997, Mech. Dev. 62(1): 51--60", + "FBrf0251844": "Matsuda et al., 2021, Nat. Commun. 12(1): 6435", + "FBrf0252066": "Kinsey et al., 2021, G3 (Bethesda) 11(12): jkab350", + "FBrf0253453": "Lu et al., 2022, Int. J. Mol. Sci. 23(9): 4543", + "FBrf0253792": "Akiyama et al., 2022, Dev. Biol. 488: 91--103", + "FBrf0255082": "Inoshita et al., 2022, iScience 25(12): 105476", + "FBrf0255366": "Bharti et al., 2023, Proc. Natl. Acad. Sci. U.S.A. 120(2): e2211189119", + "FBrf0256654": "He et al., 2023, Development 150(11): dev201297" + }, + "rex_gene": { + "FBgn0000490": "dpp" + }, + "common_terms": "A/P boundary", + "major_stages": { + "FBdv00005336": "larval stage" + }, + "major_tissues": { + "FBbt00111520": "anterior-posterior compartment boundary of imaginal disc", + "FBbt00001769": "eye disc morphogenetic furrow" + }, + "transposons": { + "FBtp0000365": "P{GAL4-dpp.blk1}" + }, + "expression_desc_text": "Drives expression at the anterior/posterior compartment boundary of imaginal discs, and at the morphogenetic furrow of the eye disc.", + "stocks": { + "FBst0305049": "106380", + "FBst0001553": "1553", + "FBst0067066": "67066", + "FBst0084296": "84296", + "FBst0084316": "84316", + "FBst0084337": "84337", + "FBst0093385": "93385" + } + } + }, + { + "driver": { + "name": "Scer\\GAL4Ir25a.PA", + "fbid": "FBal0249373", + "images": null, + "pubs": { + "FBrf0212725": "Abuin et al., 2011, Neuron 69(1): 44--60", + "FBrf0215822": "Silbering et al., 2011, J. Neurosci. 31(38): 13357--13375", + "FBrf0221182": "Min et al., 2013, Proc. Natl. Acad. Sci. U.S.A. 110(14): E1321--E1329", + "FBrf0230271": "Chen et al., 2015, Nature 527(7579): 516--520", + "FBrf0232388": "Enjin et al., 2016, Curr. Biol. 26(10): 1352--1358", + "FBrf0236232": "Frank et al., 2017, Curr. Biol. 27(15): 2381--2388.e4", + "FBrf0236716": "Chen and Amrein, 2017, Curr. Biol. 27(18): 2741--2750.e4", + "FBrf0236934": "Rist and Thum, 2017, J. Comp. Neurol. 525(18): 3865--3889", + "FBrf0237619": "Lee et al., 2018, Neuron 97(1): 67--74.e4", + "FBrf0237676": "Ahn et al., 2017, eLife 6: e30115", + "FBrf0238151": "Steck et al., 2018, eLife 7: e31625", + "FBrf0240321": "SƔnchez-AlcaƱiz et al., 2018, Nat. Commun. 9(1): 4252", + "FBrf0240352": "Sun et al., 2018, eLife 7: e39249", + "FBrf0241429": "Chai et al., 2019, Nat. Commun. 10(1): 643", + "FBrf0242503": "Lei et al., 2019, Front. Physiol. 10: 556", + "FBrf0246007": "Alpert et al., 2020, Curr. Biol. 30(12): 2275--2288.e5", + "FBrf0247159": "Weaver et al., 2020, G3 (Bethesda) 10(11): 4147--4158", + "FBrf0251811": "Dhakal et al., 2021, Commun. Biol. 4(1): 1281", + "FBrf0253093": "Trisal et al., 2022, J. Neurosci. 42(14): 2930--2941", + "FBrf0253272": "Task et al., 2022, eLife 11: e72599", + "FBrf0255204": "Omelchenko et al., 2022, Front. Mol. Neurosci. 15: 1023492", + "FBrf0256676": "Shrestha et al., 2023, EMBO Rep. 24(6): e56319", + "unattributed": null + }, + "rex_gene": { + "FBgn0031634": "Ir25a" + }, + "common_terms": "anterior cold cell, ACc, bitter sensing GRN,", + "major_stages": { + "FBdv00005336": "larval stage", + "FBdv00005369": "adult stage" + }, + "major_tissues": { + "FBbt00049613": "bitter-sensing neuron", + "FBbt00005923": "hygrosensory neuron", + "FBbt00047485": "calcium-sensing neuron of labellar S-type taste bristle", + "FBbt00048209": "bitter-sensing neuron of the leg", + "FBbt00049720": "non-aristal sensory neuron VP3", + "FBbt00051293": "adult thermosensory neuron", + "FBbt00110990": "adult hygrosensory neuron Ir40a" + }, + "transposons": { + "FBtp0057158": "P{Ir25a-GAL4.A}" + }, + "expression_desc_text": "Drives expression in a subset of bitter-sensing, hygrosensory, and cold-sensing thermosensory neurons in the labellum, legs, arista, sacculus, antenna, labrum, and larval head sensory organs", + "stocks": { + "FBst0041728": "41728" + } + } + } + ] +}'). + + +json1:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/genes/ncRNA_genes_fb_2023_04.json'). +% 51,290,751 inferences, 8.285 CPU in 8.289 seconds (100% CPU, 6190948 Lips) + +json2:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/insertions/fu_gal4_table_fb_2023_04.json'). +% 27,108,104 inferences, 4.454 CPU in 4.456 seconds (100% CPU, 6085908 Lips) + + + + diff --git a/metta_vspace/pyswip-want/flybase_learn.pl b/metta_vspace/pyswip-want/flybase_learn.pl new file mode 100755 index 00000000..8427c681 --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_learn.pl @@ -0,0 +1,2282 @@ + +:- + multifile(table_n_type/3), + multifile(load_state/2), + multifile(is_loaded_from_file_count/2), + multifile(fb_pred_nr/2), + multifile(fb_arg_type/1), + multifile(fb_arg_table_n/3), + multifile(fb_arg/1), + multifile(done_reading/1). + + :- discontiguous fb_metta_query/1. + + + + + + + + + +%./KBs/SUMO-OBO/gene-merged-SUMO.kif +% +%FBbt_00051628 + +concept_type(Arg,Type):- + fb_arg(Arg), + fb_arg_table_n(Arg,Fn,N), + table_n_type(Fn,N,Type). + +good_concept(E1):- var(E1),!,table_columns(F1,P1),nth1(N1,P1,E2),(E1=E2;E1=nth(N1,F1)). +good_concept(E1):- symbol(E1),!, is_good_symbol_name(E1). +good_concept(E1):- number(E1),!, E1>300. +good_concept(listOf(E1,_)):- good_concept(E1),symbol(E1). +good_concept(listOf(E1)):- good_concept(E1),symbol(E1). + +%:- abolish(maybe_corisponds/2). +:- dynamic(maybe_corisponds/2). + +is_good_symbol_name(E1):- symbol(E1), symbol_length(E1,L),L>=2, \+ symbol_number(E1,_). + +fb_pred_g(F,A):-fb_pred_nr(F,A), \+ skipped_anotations(F), A>0, A<20. + +mine_corisponds(Concept1,Corispondance):- + fb_arg_table_n(Concept1,Fn1,Nth1),is_good_symbol_name(Concept1), + fb_arg_table_n(Concept1,Fn2,Nth2), + (Fn1+Nth1)@>(Fn2+Nth2), + tables_can_join(Fn1,Fn2), + once((table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), + table_colnum_type(Fn2,Nth2,Type2),nonvar(Type2))), + (maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)) + = Corispondance). + +mine_overlaps:- + retractall(maybe_corisponds(_,_)), + time(once(mine_overlaps1)), + skip(mine_overlaps2). + +fbel:- ensure_loaded('flybase.metta.qlf'). +mine_overlaps1:- + for_all(mine_corisponds(Concept1,How), assert_progress(mine_overlaps1(Concept1),How)). + +mine_overlaps2_slow:- + % for_all(mine_typelevel_overlaps,true), + for_all(mine_symbolspace_overlaps,true). + + + + +mine_typelevel_overlaps:- + for_all(mine_typelevel_overlaps(Concept1,SC1,SC2), + assert_progress(mine_typelevel_overlaps(Concept1),maybe_corisponds(SC1,SC2))). + +tables_can_join(Fn1,Fn2):- Fn1@>Fn2, can_join_using(Fn1),can_join_using(Fn2). + +can_join_using(V):- var(V),!. +can_join_using(fbgn_exons2affy1_overlaps):- !, fail. +can_join_using(fbgn_exons2affy2_overlaps):- !, fail. +can_join_using(_). + +fb_data_template(T1,Data):- + fb_pred_g(T1,Arity), Arity>1,Arity<20,functor(Data,T1,Arity), + current_predicate(T1/Arity). +fb_data(T1,Data):- fb_data_template(T1,Data),call(Data). + +:- multifile(fb_arg_table_n/3). +fb_arg_table_n(Arg,Fn,N):- fb_data(Fn,Data),arg(N,Data,Arg). + +querymaker2(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + xref_class(CrossType), + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T2,CN2,CrossType), + T1\==T2, + fb_data_template(T1,Data1), + fb_data_template(T2,Data2), + arg(CN1,Data1,Inst),arg(CN2,Data2,Inst), + once((Data1,Data2,is_good_symbol_name(Inst), + + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + arg(Nth1,Data1,V1), + arg(Nth2,Data2,V2), CN1\==Nth1,CN2\==Nth2)), + sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), + reverse(Sorted,SortedR), + maplist(arg(1),SortedR,Sorted1), + maplist(arg(2),SortedR,Sorted2), + + atomic_list_concat(Sorted1,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP| Sorted2]], + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + \+ \+ ((once((Data1,Data2)),write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl. + + +querymaker:- + forall(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query), + write_src(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query))). +querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + xref_class(CrossType), + fb_data_template(T1,Data1), + fb_data_template(T2,Data2), + T1\==T2, + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T2,CN2,CrossType), + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + arg(Nth1,Data1,V1),arg(CN1,Data1,Inst), + arg(Nth2,Data2,V2),arg(CN2,Data2,Inst), + sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), + reverse(Sorted,SortedR), + maplist(arg(1),SortedR,Sorted1), + maplist(arg(2),SortedR,Sorted2), + atomic_list_concat(Sorted1,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP|Sorted2]], + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + \+ \+ ((once((Data1,Data2, Inst\=="")),write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl. + +querymaker3(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- + + + call_nth(fb_data(T1,Data1),3), arg(CN1,Data1,Inst), is_good_symbol_name(Inst), + fb_data_template(T2,Data2),T1\==T2, + arg(CN2,Data2,Inst), + once(Data2), + arg(Nth1,Data1,V1), Nth1\==CN1, + arg(Nth2,Data2,V2), Nth2\==CN2, + table_colnum_type(T1,CN1,CrossType), + table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, + table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, + sort([Type1,CrossType,Type2],Sorted), + reverse(Sorted,SortedR), + atomic_list_concat(SortedR,'-',QPD), + into_hyphens(QPD,QP), + + Self = '&self', + Query = + [match,Self, + [(','), Data1,Data2], + [QP,Inst, V1, V2 ]], + + \+ \+ + ((user:once((Data1,Data2)), + + CQuery = + [match,Self, + [(','), _CData1,_CData2], + [QP,CInst, CV1, CV2 ]], + copy_term(Query,CQuery), + atom_concat(Type2,'_2',Type22), + CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), + numbervars(CQuery,0,_,[]), + nl, + format('~n~n;;; ~w~n~n',[QP]), + write_exec(CQuery),nl,nl, + ((write_src(Data1), + if_t((Data1\==Data2),(nl, write_src(Data2))))), + nl,nl)). + +interesting_inst(II):- \+ var(II), \+ number(II), II\=='',II\=="". + +same_values(Inst,T1,K1,CN1,T2,K2,CN2):- + fb_pred_g(T1,Arity1),Arity1>1,Arity1<10, + fb_pred_g(T2,Arity2),Arity2>1,Arity2<10, + functor(Data1,T1,Arity1), + functor(Data2,T2,Arity2), + arg(CN1,Data1,Inst), + arg(CN2,Data2,Inst), + ((T1,CN1)\==(T2,CN2)), + call_nth((Data1,Data2),Nth), + (Nth=2->!;true), + ignore(table_colnum_type(T1,CN1,K1)), + ignore(table_colnum_type(T2,CN2,K2)). + +xref_class(CrossType):- no_repeats(CrossType,rep_xref_class(CrossType)). +fb_class(T):- no_repeats(T,table_colnum_type(_,_,T)). + +fb_inst_class(I,IT):- no_repeats(IIT,(fb_data(T,Data),arg(Nth,Data,I),table_colnum_type(T,Nth,IT),(IIT=I+IT))). +rep_xref_class(CrossType):- table_colnum_type(T1,_,CrossType), table_colnum_type(T2,_,CrossType),T1\==T2. + +mine_typelevel_overlaps(Concept1,'ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)):- + + %fail, % Skip over simple type named things + + Type1=Concept1,Type2=Concept1, + table_columns(Fn1,Atom1), table_columns(Fn2,Atom2), + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), + Fn1@>Fn2, nth1(Nth1,Atom1,Concept1), + good_concept(Concept1), + once((nth1(Nth2,Atom2,Concept1),length(Atom1,Arity1),length(Atom2,Arity2))). + +mine_symbolspace_overlaps:- + fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), + once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), + tables_can_join(Fn1,Fn2), + call(Atom1), arg(Nth1,Atom1,Concept1),good_concept(Concept1), arg(Nth2,Atom2,Concept1),call(Atom2))), + once(( + table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), + table_colnum_type(Fn2,Nth2,Type2),nonvar(Type1))), + assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/))). + +mine_unif_overlap:- + forall((fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), + once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), + arg(Nth1,Atom1,Concept1), arg(Nth2,Atom2,Concept1), + call(Atom1),call(Atom2), + interesting_to_unify(Concept1)))), + + assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Nth2,Fn2/*Arity2*/)))). + +interesting_to_unify(Concept1):- string(Concept1),!,symbol_length(Concept1,L),L>3. +interesting_to_unify(Concept1):- good_concept(Concept1). +interesting_to_unify(Number):- number(Number),Number>1000. + + +fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- !, + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), + tables_can_join(Fn1,Fn2), + between(1,Arity1,Nth1),Nth1<20,between(1,Arity2,Nth2),Nth2<20, + (Fn1==Fn2-> (Nth1>Nth2); true). + +fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- + fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2),Fn1@>Fn2, + mine_typelevel_overlaps(_,'ConceptMapFn'(_Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(_Type2,Nth2,Fn2/*Arity2*/)). + +table_colnum_type(Fn,Nth,Type):- table_n_type(Fn,Nth,TypeC,TypeB),(nonvar(TypeB)->Type=TypeB;Type=TypeC). + +synth_conj(QV,(Atom1),(Atom2)):- + maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1),'ConceptMapFn'(Type2,Nth2,Fn2)), + make_symbol(Fn1,Nth1,Atom1,Arg1), + make_symbol(Fn2,Nth2,Atom2,Arg2), + Fn1\=@=Fn2, + skip(Type1),skip(Type2), + Arg1=Arg2,QV=Arg1. + +synth_query(Len,Query):- synth_query(_,Len,Query). + +synth_query(_,1,[Atom]):- !, make_symbol(Atom). +synth_query(QV,N,[Q1,Q2|Query]):- + M is N -1, + synth_conj(QV,Q1,Q2), + (M>1 -> dif(QV,QV2) ; true), + synth_query(QV2,M,[Q2|Query]), + all_dif_functors([Q1,Q2|Query]). + +all_dif_functors(List):- \+ (select(Q1,List,Rest),member(Q2,Rest),functor(Q1,F1,_),functor(Q2,F2,_), F1==F2, \+ (ok_if_dupped(F1))). + +make_symbol(Atom):- fb_pred_g(F,A),functor(Atom,F,A). +make_symbol(Fn,Nth,Atom,Arg):- fb_pred_g(Fn,Arity),functor(Atom,Fn,Arity),arg(Nth,Atom,Arg). + +ok_if_dupped(best_gene_summary). + +try_overlaps:- try_overlaps(5). + +try_overlaps(N):- + synth_query(N,Query), + \+ \+ (call_match(Query), + pp_fb(grounded=Query), + ignore(maybe_english(Query))),nl,nl, + AQ = [','|Query], + pp_fb('!'(match('&flybase',AQ,AQ))),nl,nl,nl. + +no_english(fbrf_pmid_pmcid_doi,_). +no_english(physical_interactions_mitab,8). + +maybe_english(Query):- + extract_concepts(Query,Concepts),!, + ignore((maybe_english(Query,Concepts))),!. + +maybe_english(_Query,Concepts):- select(C,Concepts,Rest),is_englishy(C),member(C2,Rest),is_englishy(C2),!, pp_fb(english=[C,C2]). +maybe_english(_Query,Concepts):- pp_fb(concepts=Concepts), maplist(some_english,Concepts). + +is_englishy(C):- \+ symbol(C), \+ string(C), !, fail. +is_englishy(C):- split_string(C, ". ", " ", [_,_,_|_]). +is_englishy(C):- symbol_contains(C,". "). + +some_english(Term):- + ignore((fb_arg_table_n(C,Fn1,Nth1), \+ no_english(Fn1,Nth1),is_englishy(C), + make_symbol(Fn1,Nth1,Atom,English), + arg(Nth2,Atom,Term),Nth2\==Nth1, + call(Atom),English\=='',!, + pp_fb(Term=English))). + +extract_concepts(Query,Concepts):- + findall(C,(sub_term(C,Query),symbolic(C),good_concept(C)),L), + predsort(longest_first,L,Concepts). + +longest_first(R,A,B):- into_len(A,L1),into_len(B,L2),compare(R,L2,L1). +into_len(A,0):- var(A),!. +into_len(A,L):- \+ string(A), !, sformat(S,"~w",[A]),into_len(S,L). +into_len(A,0+A):- symbol_contains(A," "). +into_len(A,L+A):- symbol_length(A,L1), (L1 == 11 -> L = 0 ; L is - L1). + +assert_progress(Concept,Atom):- Atom=..[OP,A1,A2], A1@>A2,!,AtomSwp=..[OP,A2,A1],!,assert_progress(Concept,AtomSwp). +assert_progress(Concept,Atom):- call(Atom),!,pp_fb(already(Concept)=Atom). +assert_progress(Concept,Atom):- pp_fb(assert_progress(Concept)=Atom),assert(Atom). + + + +pfb:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase_tiny). + +pfb1:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase(100_000)). + +pfb2:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase(1_000_000)). + +pfb3:- + setenv('DISPLAY','10.0.0.122:0.0'), + profile(load_flybase_full). + + +% Convert a function and its arguments into a compound term +into_datum(Fn, [D|DataL], Data):- + (nb_current(pred_va, 'True') -> Data =.. [Fn,D,DataL]; Data =.. [Fn,D|DataL]). + +% Create a new assertion from old data +make_assertion4(Fn, Cols, NewData, OldData):- fail, + OldData=Cols, + NewData =..[Fn|Cols],!. +make_assertion4(Fn, Cols, NewData, OldData):- + into_datum(Fn, Cols, OldData), + OldData =.. [Fn|Args], + % skip(if_t(var(ArgTypes), must_det_ll_r((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), + maybe_fix_args(Fn, Args, NewArgs), + maybe_sample(Fn, NewArgs), + NewData =.. [Fn|NewArgs], !. + +maybe_fix_args( Fn,Args,NewArgs):- do_fix_fast_args( Fn,1,Args,NewArgs),!. +maybe_fix_args( Fn,Args,NewArgs):- should_fix_args, + nb_current(fb_argtypes,ArgTypes), fix_list_args(Fn,ArgTypes,Args,NewArgs),!. +maybe_fix_args(_Fn,Args,Args). + +do_fix_fast_args( Fn,Nth,[A|Args],[New|NewArgs]):- maybe_fix_columns_nth(Fn,Nth,A,New), + Nth2 is Nth+1, !, do_fix_fast_args( Fn,Nth2,Args,NewArgs). +do_fix_fast_args(_,_,A,A). + +maybe_fix_columns_nth(Fn,Nth,A,New):- fix_columns_nth(Fn,Nth), fix_concept(A,New),!. +maybe_fix_columns_nth(_,_,A,A). + + +cleanup_arities:- for_all((fb_pred_nr(F,2),fb_pred_nr(F,N),N>2),retract(fb_pred(F,2))). + + + + +:- discontiguous column_names_ext/2. +:- discontiguous primary_column/2. + +must_det_ll_r((G1,G2)):- !, once(G1),must_det_ll_r(G2). +must_det_ll_r(G):- call(G). + +% Safely executes the given Goal and prints any exception raised. +% Usage: safe(+Goal, +Info). +safe(Goal, Info) :- + % Try to call Goal. If an exception is raised, unify Exception with the exception. + catch(Goal, Exception, + % If an exception is raised, portray the clause (Info :- Goal) + % along with the exception, then rethrow the exception. + (catch_ignore(portray_clause(exception:Exception:(Info:- Goal))), throw(Exception)) + ). +% Safely executes the given Goal and prints any exception raised. +% Usage: safe(+Goal). +safe(Goal) :- safe(Goal,safe/1). + + +skipped_anotations(fbgn_exons2affy1_overlaps). +skipped_anotations(fbgn_exons2affy2_overlaps). +skipped_anotations(gene_rpkm_matrix). +skipped_anotations(dmel_gene_sequence_ontology_annotations). +%kipped_anotations(fbgn_annotation_ID). +skipped_anotations(transposon_sequence_set). + +gc_now:- set_option_value(gc,true), garbage_collect,garbage_collect_atoms,garbage_collect_clauses. + +extreme_debug(_). + +numbervars_w_singles(P):- term_singletons(P, Vars), + numbervars(Vars,260,_,[attvar(bind),singletons(false)]), + numbervars(P,14,_,[attvar(bind),singletons(true)]). + + + +pp_fb(P):- format("~N "), \+ \+ (numbervars_w_singles(P), pp_fb1(P)),flush_output. +pp_fb1(P):- write_src(P),!,nl. +:- if(current_predicate(pp_ilp/1)). +pp_fb1(P):- pp_as(P),!,format("~N"),pp_ilp(P),!. +:- endif. +pp_fb1(P):- pp_as(P),!. +pp_fb1(P):- print(P),!,nl. +pp_fb1(P):- fbdebug1(P),!,nl. + + +fbgn_exons2affy1_overlaps_each(Gene,At):- + fb_pred_nr(fbgn_exons2affy1_overlaps, Arity), + functor(Pred,fbgn_exons2affy1_overlaps, Arity), + arg(1,Pred,Gene), + call(Pred), + arg(N,Pred,At),N>1. + +fbgn_exons2affy1_overlaps_start_end(Gene,Start,End):- + fbgn_exons2affy1_overlaps_each(Gene,At),into_start_end(At,Start,End). + + +into_start_end(s_e(S,E),S,E):- nonvar(S),!. +into_start_end('..'(S,E),S,E):- nonvar(S),!. +into_start_end(at(S,E),S,E):- nonvar(S),!. +into_start_end(At,S,E):- atomic_list_concat([SS,EE],'..',At), + into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). +into_start_end(At,S,E):- atomic_list_concat([SS,EE],'_at_',At), + into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). + + +%into_fb_term(Atom,Term):- compound(Atom),!,Term=Atom. +into_fb_term(Atom,Term):- \+ atom(Atom), \+ string(Atom),!,Term=Atom. +into_fb_term(Atom,'..'(S,E)):- into_start_end(Atom,S,E),!. +into_fb_term(Atom,Term):- into_number_or_symbol(Atom,Term),!. + +fb_member(E,L):- as_list([],L,LL),member(E,LL). + +into_number_or_symbol(Atom,Term):- atomic_list_concat(List,'|',Atom),List\=[_],!,maplist(into_fb_term,List,Term). +%into_number_or_symbol(Atom,Term):- atom_number(Atom, Term),!,Term= Term. +into_number_or_symbol(Atom,Term):- catch(atom_to_term(Atom,Term,Vars),_,fail),maplist(a2t_assign_var,Vars). +into_number_or_symbol(Atom,Term):- Term=Atom. + +a2t_assign_var(N=V):- N=V. + +fbgn_exons2affy2_overlaps_each(Gene,At):- + fb_pred_nr(fbgn_exons2affy2_overlaps, Arity), + functor(Pred,fbgn_exons2affy2_overlaps, Arity), + arg(1,Pred,Gene), + call(Pred), + arg(N,Pred,At),N>1. + +fbgn_exons2affy2_overlaps_start_end(Gene,Start,End):- + fbgn_exons2affy2_overlaps_each(Gene,At),into_start_end(At,Start,End). + +some_xref_ids(Id):- member(Id,['FBgn0001301']). + +findall_flat_set(Arg,Goal,FlatSet):- + findall(Arg,Goal,List),flatten(List,Flat),list_to_set(Flat,FlatSet),!. + +expand_xref(Id,N,SetOfArgs):- + expand_xref_excpt([[]],Id,N,SetOfArgs). + +expand_xref_excpt(_Xcept,Id,_N,SetOfArgs):- compound(Id),!,SetOfArgs=[]. +expand_xref_excpt(Except,Id,N,SetOfArgs):- var(N),!,between(0,5,N),expand_xref_excpt(Except,Id,N,SetOfArgs). +expand_xref_excpt(Except,Id,N,SetOfArgs):- N=<1,!, + findall_flat_set(SoFar,expand_xref_once_except(Except,Id,N,SoFar),SetOfArgs). +expand_xref_excpt(Except,Id,N,SetOfArgs):- Nm1 is N -1, + expand_xref_once_except(Except,Id,1,SetOfArgs1), + findall_flat_set(EArgs,(member(E,SetOfArgs1),expand_xref_excpt([Id|Except],E,Nm1,EArgs)),SetOfArgs). + +gather_args(Except,F,Pred,Args):- findall_flat_set(Arg,gather_args(Except,F,Pred,Arg),Args). +gather_each_args(Except,F,Pred,Ele):- arg(N,Pred,Arg), \+ member(Arg,Except), + (number(Arg)-> Ele = is_nthOf(Arg,F,N) ; Ele = Arg). + +% findall_flat_set([Pred|Args], +% (call(Pred), +% (N=0 -> Args = [] ; gather_args([Id|Except],F,Pred,Args))),SetOfArgs). + + +expand_xref_once_except(Except,Id,P1):- nonvar(P1), \+ is_list(P1), + forall(between(1,6,N), + expand_xref_once_except_each(Except,Id,N,P1)). + +expand_xref_once_except(Except,Id,Set):- + ((between(1,6,N),expand_xref_once_except_each(Except,Id,N,nop),fail) + ->true;Set=Except). + +expand_xref_once_except_each(Except,Id,N,P1):- + fb_pred_nr(F, Arity), + xgc, + \+ member(argNOf(N,F/Arity),Except), \+ member(F/Arity,Except), + Arity>=N, + expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1). + + +expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1):- + functor(Pred,F, Arity), + arg(N,Pred,Id), + call(Pred), + add_to_except(argNOf(N,F/Arity),Except), + % \+ member(Pred,Except), + % add_to_except(Pred,Except), + call(P1,Pred), + xgc. + +xgc:- + garbage_collect, + garbage_collect_atoms, + garbage_collect_clauses, + sleep(0.033). + +add_to_except(Pred,Except):- arg(2,Except,T), nb_setarg(2,Except,[Pred|T]). + +sx1:- xinfo(_Id). + +xinfo(Id):- var(Id),!,some_xref_ids(Id), xinfo(Id). +xinfo(Id):- Id=='',!. +xinfo(Id):- number(Id),!. +xinfo(Id):- expand_xref_once_except([Id],Id,my_write_src_nl). + +my_write_src_nl(X):-!, write_src_nl(X). +my_write_src_nl(X):- + must_det_ll((X=..[F|L], maplist(fast_column,L,LL),!,write_src_nl([F|LL]))). + +/* + +xinfo(Id, N):- var(Id),!,some_xref_ids(Id), xinfo(Id,N). +xinfo(Id,N):- + expand_xref(Id,N,Args), + maplist(write_src_nl,Args). + + +xinfo(Id):- + expand_xref_once_except( + [argNOf(1,entity_publication/4), + 'obo-is-a'/2, + 'obo-synonym'/4, + 'obo-charge'/2, + fbal_to_fbgn/4, + gene_genetic_interactions/6, + fbgn_gleanr/4],Id,Set), + nop(maplist(write_src_nl,Set)),fail. +xinfo(Id):- + N=1, + forall(member(F/A, + [entity_publication/4, + 'obo-is-a'/2, + 'obo-charge'/2, + gene_genetic_interactions/6, + fbgn_gleanr/4]), + expand_xref_once_except_each_fa([[]],F,A,Id,N,_Pred)). +*/ +:- dynamic fb_tsv_pred_stats/3. + +fb_tsv_pred_stats('num-columns', allele_genetic_interactions, [4]). +fb_tsv_pred_stats('duplicated-rows', allele_genetic_interactions, [21]). +fb_tsv_pred_stats('total-rows', allele_genetic_interactions, [363452]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [1, 28688, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [2, 28685, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [3, 227000, object]). +fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [4, 8034, object]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [2, '', 19]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [2, 19, [#, ''], [#, 19]]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [3, '', 19]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [3, 19, [#, ''], [#, 19]]). +fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [4, '', 38]). +fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [4, 38, [#, ''], [#, 38]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [1, [#, [#, 'Scer\\GAL4[hs.2sev]', 1793], [#, 'Scer\\GAL4[elav.PU]', 1893], [#, 'Scer\\GAL4[Bx-MS1096]', 1990], [#, 'Scer\\GAL4[ey.PH]', 2227], [#, 'Scer\\GAL4[elav-C155]', 2526], [#, 'Scer\\GAL4[GMR.PU]', 9205], [#, 'Scer\\GAL4[GMR.PF]', 14267]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [1, [#, [#, 'Su(mg)2-1[2-1]', 1], [#, 'dnt[ap.ME4]', 1], [#, 'Fas2[unspecified]', 1], [#, 'dock[R336Q.UAS]', 1], [#, 'dock[W151K.UAS]', 1], [#, 'dock[W225K.UAS]', 1], [#, 'dock[W48K.UAS]', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0042580', 1793], [#, 'FBal0241645', 1893], [#, 'FBal0040476', 1990], [#, 'FBal0093300', 2227], [#, 'FBal0047071', 2526], [#, 'FBal0240667', 9205], [#, 'FBal0244011', 14267]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0083171', 1], [#, 'FBal0094549', 1], [#, 'FBal0104139', 1], [#, 'FBal0089352', 1], [#, 'FBal0089350', 1], [#, 'FBal0089348', 1], [#, 'FBal0089346', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [3, [#, [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has wing phenotype', 8], [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has lethal phenotype', 8], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has neoplasia phenotype', 9], [#, 'rho[ve-1], vn[1] has wing vein phenotype', 10], [#, 'Dp[GMR.PD], E2f1[GMR.PD] has eye phenotype', 10], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has eye phenotype', 18]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [3, [#, [#, '1038[1038] is an enhancer of visible phenotype of vg[83b27]/vg[1]', 1], [#, 'bas[1] is an enhancer of paralytic phenotype of para[bss1]', 1], [#, 'baz[4] has abnormal cell polarity phenotype, enhanceable by Dhc64C[6-6]/Dhc64C[6-8]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-suppressible by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-suppressible by aPKC[Exc55]', 1]]]). +fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0179402', 1369], [#, 'FBrf0237532', 1506], [#, 'FBrf0147055', 1723], [#, 'FBrf0246190', 1852], [#, 'FBrf0190765', 1868], [#, 'FBrf0199094', 1940], [#, 'FBrf0187664', 2514]]]). +fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0158937', 1], [#, 'FBrf0159209', 1], [#, 'FBrf0192307', 1], [#, 'FBrf0226217', 1], [#, 'FBrf0160985', 1], [#, 'FBrf0134563', 1], [#, 'FBrf0235180', 1]]]). +fb_tsv_pred_stats('num-columns', fbal_to_fbgn, [4]). +fb_tsv_pred_stats('duplicated-rows', fbal_to_fbgn, [0]). +fb_tsv_pred_stats('total-rows', fbal_to_fbgn, [288468]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [1, 288468, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [2, 288454, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [3, 33136, object]). +fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [4, 33136, object]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [3, '', 58]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [3, 58, [#, ''], [#, 58]]). +fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [4, '', 58]). +fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [4, 58, [#, ''], [#, 58]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [2, [#, [#, 'abd-A[HCJ32', 2], [#, 'Ecol\\lacZ[HCJ32', 2], [#, 'Ecol\\lacZ[Dora-PL29', 2], [#, 'abd-A[HC184B-HCJ32', 2], [#, 'Mhc[', 2], [#, 'y[2', 3], [#, 'y[1', 5]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [2, [#, [#, 'Xrp1[142]', 1], [#, 'Apc2[45]', 1], [#, 'Apc2[5-3]', 1], [#, 'Apc2[Delta20rep.Tag:HA]', 1], [#, 'TBC1d7[Apc2-79]', 1], [#, 'mRpS24[Apc2-79]', 1], [#, 'mRpS24[+t3.78]', 1]]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0004034', 989], [#, 'FBgn0003996', 1474], [#, 'FBgn0015250', 2466], [#, 'FBgn0262639', 3340], [#, 'FBgn0014446', 4731], [#, 'FBgn0014447', 12710], [#, 'FBgn0014445', 30381]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0267024', 1], [#, 'FBgn0044109', 1], [#, 'FBgn0018700', 1], [#, 'FBgn0014164', 1], [#, 'FBgn0003537', 1], [#, 'FBgn0002275', 1], [#, 'FBgn0001163', 1]]]). +fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [4, [#, [#, y, 989], [#, w, 1474], [#, 'Ecol\\lexA', 2466], [#, 'Hsap\\RELA', 3340], [#, 'Avic\\GFP', 4731], [#, 'Ecol\\lacZ', 12710], [#, 'Scer\\GAL4', 30381]]]). +fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [4, [#, [#, 'asRNA:CR45468', 1], [#, 'E(rst)C383', 1], [#, 'Dpau\\v', 1], [#, fez, 1], [#, 'Stp-1', 1], [#, 'l(3)70Ac', 1], [#, 'GustR', 1]]]). +fb_tsv_pred_stats('num-columns', genotype_phenotype_data, [7]). +fb_tsv_pred_stats('duplicated-rows', genotype_phenotype_data, [1032]). +fb_tsv_pred_stats('total-rows', genotype_phenotype_data, [384206]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [1, 155953, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [2, 155919, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [3, 3603, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [4, 3608, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [5, 1340, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [6, 1348, object]). +fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [7, 19007, object]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [2, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [2, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [3, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [3, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [4, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [4, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [5, '', 242201]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [5, 242201, [#, ''], [#, 242201]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [6, '', 242201]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [6, 242201, [#, ''], [#, 242201]]). +fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [7, '', 321]). +fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [7, 321, [#, ''], [#, 321]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [1, [#, [#, 'hid[GMR.PG]', 177], [#, 'numb[1]', 190], [#, 'wg[l-17]', 198], [#, 'N[l1N-ts1]', 238], [#, 'y[1', 242], [#, 'N[55e11]', 261], [#, 'Pink1[B9]', 316]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [1, [#, [#, 'Scer\\GAL4[elav.PLu] y[GD1564] Dcr-2[UAS.cDa]', 1], [#, 'Scer\\GAL4[nub-AC-62] Slu7[HMC04054]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b6[HMS02566]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b5[HMS00097]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b1[HMS00055]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a2[HMC03799]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a1[HMS00157]', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0265023', 177], [#, 'FBal0013186', 190], [#, 'FBal0018509', 198], [#, 'FBal0012887', 238], [#, 'FBal0012701', 261], [#, 'FBal0193144', 316]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0244778', 1], [#, 'FBal0058766 FBal0150204', 1], [#, 'FBal0058766 FBal0150205', 1], [#, 'FBal0147425 FBal0241645 FBal0299692', 1], [#, 'FBal0058766 FBal0215661', 1], [#, 'FBal0147425 FBal0241645 FBal0290792', 1], [#, 'FBal0058766 FBal0277700', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [3, [#, [#, 'lethal - all die during embryonic stage', 5395], [#, eye, 8272], [#, 'abnormal neuroanatomy', 9153], [#, wing, 10701], [#, visible, 24435], [#, lethal, 35360], [#, viable, 47447]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [3, [#, [#, 'rough endoplasmic reticulum membrane', 1], [#, 'muscle cell of basalar muscle 49', 1], [#, 'gonadal sheath', 1], [#, 'visceral muscle cell', 1], [#, 'A1-7 ventral acute muscle cell', 1], [#, 'pupal s-LNv neuron', 1], [#, 'larval s-LNv neuron', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [4, [#, [#, 'FBcv0002033', 5395], [#, 'FBbt00004508', 8272], [#, 'FBcv0000435', 9153], [#, 'FBbt00004729', 10701], [#, 'FBcv0000354', 24435], [#, 'FBcv0000351', 35360], [#, 'FBcv0000349', 47447]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [4, [#, [#, 'FBbt00001314', 1], [#, 'FBbt00110023', 1], [#, 'FBbt00110022', 1], [#, 'FBbt00002511', 1], [#, 'FBbt00067044', 1], [#, 'FBbt00067062', 1], [#, 'FBbt00017021', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [5, [#, [#, 'embryonic stage', 4459], [#, 'somatic clone', 8931], [#, 'larval stage', 9821], [#, 'third instar larval stage', 9888], [#, 'adult stage', 16290], [#, recessive, 40476]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [5, [#, [#, 'germline clone|embryonic stage 13', 1], [#, 'somatic clone - tissue specific|decreased number', 1], [#, 'oogenesis|decreased number|germline clone', 1], [#, 'germline clone|decreased number', 1], [#, 'recessive|first instar larval stage|maternal effect', 1], [#, 'maternal effect|second instar larval stage|recessive', 1], [#, 'larval stage|somatic clone|cell autonomous|decreased number', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [6, [#, [#, 'FBdv00005289', 4459], [#, 'FBcv0000336', 8931], [#, 'FBdv00005336', 9821], [#, 'FBdv00005339', 9888], [#, 'FBdv00005369', 16290], [#, 'FBcv0000298', 40476]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [6, [#, [#, 'FBcv0000732', 1], [#, 'FBcv0000333|FBdv00005369|FBcv0000793', 1], [#, 'FBcv0000153|FBcv0000068', 1], [#, 'FBcv0000058|FBcv0000061', 1], [#, 'FBcv0000336|FBdv00005339|FBcv0000061', 1], [#, 'FBcv0007050|FBdv00007001|FBcv0000068', 1], [#, 'FBcv0007048|FBdv00005338', 1]]]). +fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0132177', 2452], [#, 'FBrf0179797', 2682], [#, 'FBrf0210524', 7345], [#, 'FBrf0212295', 11407], [#, 'FBrf0210226', 11838], [#, unattributed, 15059], [#, 'FBrf0214518', 19955]]]). +fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0189827', 1], [#, 'FBrf0179942', 1], [#, 'FBrf0206908', 1], [#, 'FBrf0183397', 1], [#, 'FBrf0023153', 1], [#, 'FBrf0221688', 1], [#, 'FBrf0237982', 1]]]). +fb_tsv_pred_stats('num-columns', cDNA_clone_data, [6]). +fb_tsv_pred_stats('duplicated-rows', cDNA_clone_data, [0]). +fb_tsv_pred_stats('total-rows', cDNA_clone_data, [722570]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [1, 722570, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [2, 4, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [3, 722570, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [4, 50, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [5, 22711, object]). +fb_tsv_pred_stats('unique-values', cDNA_clone_data, [6, 696400, object]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [3, unknown, 1]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [3, 1, [#, unknown], [#, 1]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [4, '', 354]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [4, 354, [#, ''], [#, 354]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [5, '', 696444]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [5, 696444, [#, ''], [#, 696444]]). +fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [6, '', 26168]). +fb_tsv_pred_stats('missing-values', cDNA_clone_data, [6, 26168, [#, ''], [#, 26168]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [4, [#, [#, 'SD_cDNA', 18885], [#, 'GH_cDNA', 20768], [#, 'AT_cDNA', 22564], [#, 'RH_cDNA', 52475], [#, 'RE_cDNA', 58036], [#, 'EK_EP_cDNA', 161904], [#, 'RP_cDNA', 220083]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [4, [#, [#, 'TB_cDNA', 3], [#, 'TA_cDNA', 36], [#, 'DE-ORESTES_cDNA', 61], [#, 'CB_cDNA', 61], [#, 'AM_cDNA', 84], [#, 'ST_cDNA', 85], [#, 'RT_pCR8_cDNA', 156]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [5, [#, [#, 'AY069671', 2], [#, 'AY051957', 2], [#, 'AY061414', 2], [#, 'AY069707', 2], [#, 'AY051914', 2], [#, 'AY231748', 3]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [5, [#, [#, 'BT150453', 1], [#, 'BT050556', 1], [#, 'BT010219', 1], [#, 'BT125004', 1], [#, 'BT006005', 1], [#, 'BT099857', 1], [#, 'BT100119', 1]]]). +fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [6, [#, [#, 'GH897620', 1], [#, 'GH934971', 1], [#, 'CA807794', 1], [#, 'AI256966', 2], [#, 'BI636404', 2], [#, 'BI633401', 2]]]). +fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [6, [#, [#, 'CA807794', 1], [#, 'GH872553', 1], [#, 'GH881842', 1], [#, 'GH911192', 1], [#, 'GH817175', 1], [#, 'GH899993', 1], [#, 'GH918491', 1]]]). +fb_tsv_pred_stats('num-columns', genomic_clone_data, [4]). +fb_tsv_pred_stats('duplicated-rows', genomic_clone_data, [0]). +fb_tsv_pred_stats('total-rows', genomic_clone_data, [50400]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [1, 50400, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [2, 1, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [3, 50400, object]). +fb_tsv_pred_stats('unique-values', genomic_clone_data, [4, 970, object]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', genomic_clone_data, [4, '', 49428]). +fb_tsv_pred_stats('missing-values', genomic_clone_data, [4, 49428, [#, ''], [#, 49428]]). +fb_tsv_pred_stats('most-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). +fb_tsv_pred_stats('less-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). +fb_tsv_pred_stats('most-frequent', genomic_clone_data, [4, [#, [#, 'AC104703', 1], [#, 'AC010031', 1], [#, 'AC069405', 1], [#, 'AC011662', 2], [#, 'AC098575', 2], [#, 'AC009888', 2]]]). +fb_tsv_pred_stats('less-frequent', genomic_clone_data, [4, [#, [#, 'AC105774', 1], [#, 'AC091226', 1], [#, 'AC069405', 1], [#, 'AC154046', 1], [#, 'AC010031', 1], [#, 'AC104703', 1], [#, 'AC010573', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_uniprot, [4]). +fb_tsv_pred_stats('duplicated-rows', fbgn_uniprot, [0]). +fb_tsv_pred_stats('total-rows', fbgn_uniprot, [32529]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [1, 17130, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [2, 17130, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [3, 13964, object]). +fb_tsv_pred_stats('unique-values', fbgn_uniprot, [4, 32341, object]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_uniprot, [3, '', 4918]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [3, 4918, [#, ''], [#, 4918]]). +fb_tsv_pred_stats('missing-values', fbgn_uniprot, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0265045', 40], [#, 'FBgn0013885', 49], [#, 'FBgn0002022', 50], [#, 'FBgn0285944', 56], [#, 'FBgn0033159', 79], [#, 'FBgn0082496', 101], [#, 'FBgn0003731', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0040211', 1], [#, 'FBgn0040235', 1], [#, 'FBgn0040239', 1], [#, 'FBgn0040250', 1], [#, 'FBgn0040251', 1], [#, 'FBgn0040252', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [2, [#, [#, 'Strn-Mlck', 40], [#, 'Dsub\\Acph-1', 49], [#, 'Catsup', 50], [#, para, 56], [#, 'Dscam1', 79], [#, 'Dpmo\\bi', 101], [#, 'Egfr', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [2, [#, [#, a, 1], [#, hgo, 1], [#, 'c12.1', 1], [#, bc10, 1], [#, 'Ugt304A1', 1], [#, 'Ugt302K1', 1], [#, 'Ugt303A1', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [3, [#, [#, 'CG33950', 32], [#, 'CG44162', 40], [#, 'CG10449', 50], [#, 'CG9907', 56], [#, 'CG17800', 79], [#, 'CG10079', 267]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [3, [#, [#, 'CG6741', 1], [#, 'CG9913', 1], [#, 'CG3172', 1], [#, 'CG14356', 1], [#, 'CG14355', 1], [#, 'CG9722', 1], [#, 'CG9649', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [4, [#, [#, 'Q7KV12', 5], [#, 'Q5F4J7', 6], [#, 'P02255', 18], [#, 'P84051', 18], [#, 'P02299', 24], [#, 'P02283', 24], [#, 'P84040', 24]]]). +fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [4, [#, [#, 'A0A0B4LG21', 1], [#, 'Q9GST6', 1], [#, 'Q9GST1', 1], [#, 'Q9GN59', 1], [#, 'Q9GNH0', 1], [#, 'Q9GPD9', 1], [#, 'Q9GNH4', 1]]]). +fb_tsv_pred_stats('num-columns', gp_informatio, [2]). +fb_tsv_pred_stats('duplicated-rows', gp_informatio, [8413]). +fb_tsv_pred_stats('total-rows', gp_informatio, [11695]). +fb_tsv_pred_stats('unique-values', gp_informatio, [1, 1885, object]). +fb_tsv_pred_stats('unique-values', gp_informatio, [2, 1851, object]). +fb_tsv_pred_stats('missing-values', gp_informatio, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gp_informatio, [2, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gp_informatio, [1, [#, [#, at, 24], [#, kinase, 35], [#, factor, 47], [#, of, 60], [#, 'P450', 82], [#, receptor, 203], [#, protein, 334]]]). +fb_tsv_pred_stats('less-frequent', gp_informatio, [1, [#, [#, '07/24/2023', 1], [#, 'receptor\\CG30106\\protein\\taxon:7227\\\\UniProtKB:A1ZAX0\\', 1], [#, '1b\\CG6446\\protein\\taxon:7227\\\\UniProtKB:O44253|UniProtKB:Q7KK54\\', 1], [#, '55B\\CG5765\\protein\\taxon:7227\\\\UniProtKB:Q8SXS5|UniProtKB:A1ZB24\\', 1], [#, 'K[+]', 1], [#, shock, 1], [#, 'MCU', 1]]]). +fb_tsv_pred_stats('most-frequent', gp_informatio, [2, [#, [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, 'regulator\\CG17680\\protein\\taxon:7227\\\\UniProtKB:Q7JX57\\', 1], [#, 'channel\\CG5076\\protein\\taxon:7227\\\\UniProtKB:Q23974|UniProtKB:A1ZB14|UniProtKB:A0A0B4LGW2\\', 1], [#, _, 1]]]). +fb_tsv_pred_stats('less-frequent', gp_informatio, [2, [#, [#, _, 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '2\\CG10924\\protein\\taxon:7227\\\\UniProtKB:Q7JXB5|UniProtKB:A8DYI3\\', 1], [#, '1\\CG5170\\protein\\taxon:7227\\\\UniProtKB:Q7KN84|UniProtKB:Q95T04|UniProtKB:Q9U982|UniProtKB:Q7KN75\\', 1]]]). +fb_tsv_pred_stats('num-columns', pmid_fbgn_uniprot, [5]). +fb_tsv_pred_stats('duplicated-rows', pmid_fbgn_uniprot, [0]). +fb_tsv_pred_stats('total-rows', pmid_fbgn_uniprot, [2262948]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [1, 57873, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [2, 57872, int64]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [3, 146121, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [4, 2, object]). +fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [5, 184918, object]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0244508', 11253], [#, 'FBrf0229340', 12087], [#, 'FBrf0210524', 14897], [#, 'FBrf0212295', 20997], [#, 'FBrf0210226', 21057], [#, 'FBrf0219727', 27601], [#, 'FBrf0200326', 154679]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0207593', 1], [#, 'FBrf0073396', 1], [#, 'FBrf0216372', 1], [#, 'FBrf0050713', 1], [#, 'FBrf0215265', 1], [#, 'FBrf0228014', 1], [#, 'FBrf0084265', 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [2, [#, [#, 31722958, 11253], [#, 25312911, 12087], [#, 20371351, 14897], [#, 21074052, 20997], [#, 20220848, 21057], [#, 23071443, 27601], [#, 17994087, 154679]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [2, [#, [#, 19226322, 1], [#, 21035367, 1], [#, 3938362, 1], [#, 7641726, 1], [#, 31992709, 1], [#, 2504633, 1], [#, 7924995, 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0003371', 11920], [#, 'FBgn0001624', 12980], [#, 'FBgn0264255', 17080], [#, 'FBgn0004647', 18088], [#, 'FBgn0033159', 22357], [#, 'FBgn0285944', 22904], [#, 'FBgn0003731', 395427]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0182483', 1], [#, 'FBgn0152605', 1], [#, 'FBgn0102225', 1], [#, 'FBgn0191710', 1], [#, 'FBgn0186768', 1], [#, 'FBgn0138504', 1], [#, 'FBgn0147962', 1]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). +fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'Q7YSQ1', 2584], [#, 'Q7Z1J1', 2584], [#, 'Q7YSR5', 2584], [#, 'Q7YSU6', 2584], [#, 'M9NE67', 2584], [#, 'P10090', 3804], [#, 'P09615', 4838]]]). +fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'B4QI97', 1], [#, 'B4IFF0', 1], [#, 'B3MJC2', 1], [#, 'B4NVB3', 1], [#, 'A0A0Q9WJA5', 1], [#, 'B4H241', 1], [#, 'B3NEU8', 1]]]). +fb_tsv_pred_stats('num-columns', automated_gene_summaries, [2]). +fb_tsv_pred_stats('duplicated-rows', automated_gene_summaries, [0]). +fb_tsv_pred_stats('total-rows', automated_gene_summaries, [237237]). +fb_tsv_pred_stats('unique-values', automated_gene_summaries, [1, 237237, object]). +fb_tsv_pred_stats('unique-values', automated_gene_summaries, [2, 237237, object]). +fb_tsv_pred_stats('missing-values', automated_gene_summaries, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', automated_gene_summaries, [2, 0, [], []]). +fb_tsv_pred_stats('num-columns', best_gene_summary, [4]). +fb_tsv_pred_stats('duplicated-rows', best_gene_summary, [0]). +fb_tsv_pred_stats('total-rows', best_gene_summary, [32142]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [1, 32142, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [2, 32142, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [3, 5, object]). +fb_tsv_pred_stats('unique-values', best_gene_summary, [4, 29750, object]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', best_gene_summary, [4, '', 21]). +fb_tsv_pred_stats('missing-values', best_gene_summary, [4, 21, [#, ''], [#, 21]]). +fb_tsv_pred_stats('most-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). +fb_tsv_pred_stats('less-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). +fb_tsv_pred_stats('most-frequent', best_gene_summary, [4, [#, [#, 'Predicted to enable chitin binding activity. Predicted to be located in extracellular region.', 48], [#, 'Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis.', 56], [#, 'Is expressed in spermatozoon.', 63], [#, 'Predicted to be involved in RNA processing. Predicted to be located in nucleolus.', 72], [#, 'Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome.', 96], [#, 'Is expressed in organism.', 107], [#, 'Is expressed in adult head.', 114]]]). +fb_tsv_pred_stats('less-frequent', best_gene_summary, [4, [#, [#, 'The gene lethal (1) 291-68 is referred to in FlyBase by the symbol Dmel\\l(1)291-68 (FBgn0011177). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: lethal.', 1], [#, 'The gene E(csw)3B is referred to in FlyBase by the symbol Dmel\\E(csw)3B (FBgn0041256). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is described by: . The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene E3 is referred to in FlyBase by the symbol Dmel\\E3 (FBgn0041255). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene H23-14 is referred to in FlyBase by the symbol Dmel\\H23-14 (FBgn0041211). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: auxotroph.', 1], [#, 'The gene Lipocalin is referred to in FlyBase by the symbol Dmel\\Lipocalin (FBgn0041202). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene prolyl-4-hydroxylase-a related protein is referred to in FlyBase by the symbol Dmel\\PH4\\03b1-RP (FBgn0041197). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene SSP6107 is referred to in FlyBase by the symbol Dmel\\SSP6107 (FBgn0041189). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1]]]). +fb_tsv_pred_stats('num-columns', 'Dmel_enzyme_data', [11]). +fb_tsv_pred_stats('duplicated-rows', 'Dmel_enzyme_data', [0]). +fb_tsv_pred_stats('total-rows', 'Dmel_enzyme_data', [3969]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [1, 572, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [2, 572, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [3, 441, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [4, 441, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [5, 281, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [6, 182, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [7, 3736, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [8, 3736, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [9, 2454, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [10, 860, object]). +fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [11, 860, object]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [5, '', 1642]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [5, 1642, [#, ''], [#, 1642]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [6, '', 2724]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [6, 2724, [#, ''], [#, 2724]]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [8, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [9, '', 1328]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [9, 1328, [#, ''], [#, 1328]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [10, '', 1609]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [10, 1609, [#, ''], [#, 1609]]). +fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [11, '', 1609]). +fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [11, 1609, [#, ''], [#, 1609]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001478', 36], [#, 'FBgg0001695', 36], [#, 'FBgg0001207', 45], [#, 'FBgg0001618', 51], [#, 'FBgg0001079', 61], [#, 'FBgg0000128', 98], [#, 'FBgg0001078', 114]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001510', 1], [#, 'FBgg0001617', 1], [#, 'FBgg0001419', 1], [#, 'FBgg0001420', 1], [#, 'FBgg0001622', 1], [#, 'FBgg0001246', 1], [#, 'FBgg0000869', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'UNCLASSIFIED RNA ENDONUCLEASES', 36], [#, 'CYTOCHROME P450 - CYP3 CLAN', 36], [#, 'UNCLASSIFIED NON-AMINOACYL ACYLTRANSFERASES', 45], [#, 'ECDYSTEROID KINASE-LIKE', 51], [#, 'S1A SERINE PROTEASES - CHYMOTRYPSIN-LIKE', 61], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'TRANSGLUTAMINASES', 1], [#, 'BETA-ALANYL-DOPAMINE/HISTAMINE HYDROLASES', 1], [#, 'SITE 2 PEPTIDASES', 1], [#, 'M76 METALLOENDOPEPTIDASES', 1], [#, 'EYA FAMILY PROTEIN TYROSINE PHOSPHATASES', 1], [#, 'DEOXYCYTIDYLTRANSFERASES', 1], [#, 'OXO-ACID-LYASES', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0004806', 55], [#, 'GO:0003724', 59], [#, 'GO:0004674', 90], [#, 'GO:0004497', 93], [#, 'GO:0003924', 146], [#, 'GO:0061630', 150], [#, 'GO:0004252', 205]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0071566', 1], [#, 'GO:0003810', 1], [#, 'GO:0003923', 1], [#, 'GO:0016642', 1], [#, 'GO:0061863', 1], [#, 'GO:0008970', 1], [#, 'GO:0016872', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'triglyceride lipase activity', 55], [#, 'RNA helicase activity', 59], [#, 'protein serine/threonine kinase activity', 90], [#, 'monooxygenase activity', 93], [#, 'GTPase activity', 146], [#, 'ubiquitin protein ligase activity', 150], [#, 'serine-type endopeptidase activity', 205]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'UFM1 activating enzyme activity', 1], [#, 'protein-glutamine gamma-glutamyltransferase activity', 1], [#, 'GPI-anchor transamidase activity', 1], [#, 'oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor', 1], [#, 'microtubule plus end polymerase', 1], [#, 'phospholipase A1 activity', 1], [#, 'intramolecular lyase activity', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [5, [#, [#, '3.1.3.16', 47], [#, '3.4.24.-', 47], [#, '3.1.1.3', 55], [#, '3.6.4.13', 59], [#, '2.7.11.1', 90], [#, '3.4.21.-', 209]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [5, [#, [#, '1.16.1.-', 1], [#, '3.4.19.5', 1], [#, '3.2.1.130', 1], [#, '3.5.1.89', 1], [#, '4.3.1.-|4.3.-.-', 1], [#, '7.2.2.9', 1], [#, '4.1.99.22', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ubiquitinyl hydrolase 1', 36], [#, 'glutathione transferase', 38], [#, 'protein-serine/threonine phosphatase', 47], [#, 'triacylglycerol lipase', 55], [#, 'RNA helicase', 59], [#, 'non-specific serine/threonine protein kinase', 90]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ribonuclease T2', 1], [#, 'tripeptidyl-peptidase I|tripeptidyl-peptidase II', 1], [#, 'phospholipase A1', 1], [#, 'deoxyribonuclease II', 1], [#, 'N-acetylglucosamine-6-phosphate deacetylase', 1], [#, 'molybdopterin molybdotransferase', 1], [#, 'protoporphyrin ferrochelatase', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0028916', 3], [#, 'FBgn0002905', 3], [#, 'FBgn0030731', 3], [#, 'FBgn0011768', 3], [#, 'FBgn0034246', 3], [#, 'FBgn0263831', 4], [#, 'FBgn0010355', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0043576', 1], [#, 'FBgn0043577', 1], [#, 'FBgn0043578', 1], [#, 'FBgn0029689', 1], [#, 'FBgn0037759', 1], [#, 'FBgn0027538', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'CG33090', 3], [#, 'PolQ', 3], [#, 'Mfe2', 3], [#, 'Fdh', 3], [#, 'Dcr-2', 3], [#, 'Gen', 4], [#, 'Taf1', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'ari-2', 1], [#, 'PGRP-SC1a', 1], [#, 'PGRP-SB2', 1], [#, 'PGRP-SB1', 1], [#, 'CG6428', 1], [#, 'CG8526', 1], [#, beta4GalNAcTA, 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [9, [#, [#, rudimentary, 3], [#, 'Trehalose-6-phosphate synthase 1', 3], [#, 'peroxisomal Multifunctional enzyme type 2', 3], [#, sepia, 3], [#, 'XPG-like endonuclease', 4], [#, 'TBP-associated factor 1', 4]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [9, [#, [#, 'ariadne 2', 1], [#, 'Cardiolipin synthase', 1], [#, 'Sphingomyelin synthase related', 1], [#, 'Phosphatidylserine synthase', 1], [#, 'Pyruvate kinase', 1], [#, 'easily shocked', 1], [#, fumble, 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [10, [#, [#, '5.2.1.8', 33], [#, '3.4.19.12', 36], [#, '3.1.3.16', 38], [#, '3.1.1.3', 51], [#, '3.6.4.13', 54], [#, '2.7.11.1', 104]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [10, [#, [#, '2.5.1.16', 1], [#, '2.1.1.62', 1], [#, '2.1.1.56', 1], [#, '2.1.1.386', 1], [#, '2.3.3.10', 1], [#, '2.3.3.8', 1], [#, '2.3.1.168', 1]]]). +fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'peptidylprolyl isomerase', 33], [#, 'ubiquitinyl hydrolase 1', 36], [#, 'protein-serine/threonine phosphatase', 38], [#, 'triacylglycerol lipase', 51], [#, 'RNA helicase', 54], [#, 'non-specific serine/threonine protein kinase', 104]]]). +fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'spermidine synthase', 1], [#, 'mRNA (2\'-O-methyladenosine-N(6)-)-methyltransferase', 1], [#, 'mRNA (guanine-N(7))-methyltransferase', 1], [#, 'small RNA 2\'-O-methyltransferase', 1], [#, 'hydroxymethylglutaryl-CoA synthase', 1], [#, 'ATP citrate synthase', 1], [#, 'dihydrolipoyllysine-residue (2-methylpropanoyl)transferase', 1]]]). +fb_tsv_pred_stats('num-columns', dmel_gene_sequence_ontology_annotations, [4]). +fb_tsv_pred_stats('duplicated-rows', dmel_gene_sequence_ontology_annotations, [0]). +fb_tsv_pred_stats('total-rows', dmel_gene_sequence_ontology_annotations, [38590]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [1, 17902, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [2, 17902, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [3, 44, object]). +fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [4, 44, object]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0263102', 5], [#, 'FBgn0264308', 5], [#, 'FBgn0285944', 5], [#, 'FBgn0000448', 5], [#, 'FBgn0266019', 5], [#, 'FBgn0260866', 5], [#, 'FBgn0283521', 5]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0000003', 1], [#, 'FBgn0085282', 1], [#, 'FBgn0085280', 1], [#, 'FBgn0085279', 1], [#, 'FBgn0085277', 1], [#, 'FBgn0085276', 1], [#, 'FBgn0085274', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, psq, 5], [#, hbt, 5], [#, para, 5], [#, 'Hr3', 5], [#, rudhira, 5], [#, dnr1, 5], [#, lola, 5]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, '7SLRNA:CR32864', 1], [#, 'CG34253', 1], [#, 'CG34251', 1], [#, 'CG34250', 1], [#, 'CG34248', 1], [#, 'CG34247', 1], [#, 'CG34245', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, gene_with_stop_codon_read_through, 402], [#, antisense_lncRNA_gene, 507], [#, gene, 767], [#, gene_with_edited_transcript, 810], [#, lncRNA_gene, 1996], [#, protein_coding_gene, 13986], [#, nuclear_gene, 17707]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, 'RNase_MRP_RNA_gene', 1], [#, 'RNase_P_RNA_gene', 1], [#, mt_SSU_rRNA_gene, 1], [#, mt_LSU_rRNA_gene, 1], [#, gene_with_recoded_mRNA, 2]]]). +fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0000697', 402], [#, 'SO:0002182', 507], [#, 'SO:0000704', 767], [#, 'SO:0000548', 810], [#, 'SO:0002127', 1996], [#, 'SO:0001217', 13986], [#, 'SO:0000087', 17707]]]). +fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0002353', 1], [#, 'SO:0001269', 1], [#, 'SO:0001640', 1], [#, 'SO:0001639', 1], [#, 'SO:0002365', 1], [#, 'SO:0002364', 1], [#, 'SO:0000693', 2]]]). +fb_tsv_pred_stats('num-columns', dmel_unique_protein_isoforms, [4]). +fb_tsv_pred_stats('duplicated-rows', dmel_unique_protein_isoforms, [0]). +fb_tsv_pred_stats('total-rows', dmel_unique_protein_isoforms, [22452]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [1, 13986, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [2, 13986, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [3, 22452, object]). +fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [4, 5633, object]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', dmel_unique_protein_isoforms, [4, '', 16820]). +fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [4, 16820, [#, ''], [#, 16820]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0003429', 23], [#, 'FBgn0033504', 25], [#, 'FBgn0266696', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 57], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0038579', 1], [#, 'FBgn0038581', 1], [#, 'FBgn0038582', 1], [#, 'FBgn0038583', 1], [#, 'FBgn0038584', 1], [#, 'FBgn0038585', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [2, [#, [#, slo, 23], [#, 'CAP', 25], [#, 'Svil', 25], [#, trol, 25], [#, 'mod(mdg4)', 31], [#, para, 57], [#, 'Dscam1', 75]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [2, [#, [#, a, 1], [#, 'CG14313', 1], [#, 'CG14314', 1], [#, 'CG7988', 1], [#, 'CG7183', 1], [#, mTerf5, 1], [#, 'Non3', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'Saf-B-PF', 1], [#, 'sosie-PC', 1], [#, 'Nct-PC', 1], [#, 'CG3744-PG', 1], [#, 'CG3744-PF', 1], [#, 'Not11-PC', 1]]]). +fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'MAN1-PB,MAN1-PC', 1], [#, 'Nct-PC', 1], [#, 'sosie-PC', 1], [#, 'Saf-B-PF', 1], [#, 'Ude-PC,Ude-PD', 1], [#, 'CG5805-PB', 1], [#, 'atl-PB,atl-PC', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_annotation_ID, [6]). +fb_tsv_pred_stats('duplicated-rows', fbgn_annotation_ID, [0]). +fb_tsv_pred_stats('total-rows', fbgn_annotation_ID, [17901]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [1, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [2, 1, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [3, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [4, 6498, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [5, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [6, 2214, object]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [4, '', 11059]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [4, 11059, [#, ''], [#, 11059]]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [5, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [6, '', 15268]). +fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [6, 15268, [#, ''], [#, 15268]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0031342', 4], [#, 'FBgn0034648', 4], [#, 'FBgn0037173', 6], [#, 'FBgn0003932', 6], [#, 'FBgn0052605', 12], [#, 'FBgn0002867', 32]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0034701,FBgn0034702', 1], [#, 'FBgn0036269,FBgn0036270', 1], [#, 'FBgn0062499', 1], [#, 'FBgn0045834,FBgn0046807', 1], [#, 'FBgn0060100', 1], [#, 'FBgn0036185,FBgn0040818', 1], [#, 'FBgn0036175', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG14398', 4], [#, 'CG15675', 4], [#, 'CG10450', 4], [#, 'CG14458', 6], [#, 'CG2149', 6], [#, 'CG32605', 12]]]). +fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG13505', 1], [#, 'CG15275,CG15276,CG15277,CG33515', 1], [#, 'CG31537,CG2534', 1], [#, 'CG30111,CG5058', 1], [#, 'CG30164,CG30165,CG30166,CG4556', 1], [#, 'CG30179,CG30174,CG33149,CG3220', 1], [#, 'CG14428', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_exons2affy1_overlaps, [30]). +fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy1_overlaps, [0]). +fb_tsv_pred_stats('total-rows', fbgn_exons2affy1_overlaps, [12082]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [1, 12082, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [2, 11598, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [3, 11576, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [4, 11569, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [5, 11538, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [6, 11509, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [7, 11474, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [8, 11449, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [9, 11414, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [10, 11387, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [11, 11345, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [12, 11314, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [13, 11244, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [14, 11171, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [15, 10830, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [16, 1808, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [17, 1555, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [18, 1450, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [19, 1358, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [20, 1308, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [21, 1258, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [22, 1213, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [23, 1183, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [24, 1139, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [25, 1102, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [26, 1058, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [27, 994, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [28, 922, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [29, 743, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [30, 34, object]). 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fbgn_exons2affy1_overlaps, [7, 232, [#, ''], [#, 232]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [8, '', 265]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [8, 265, [#, ''], [#, 265]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [9, '', 305]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [9, 305, [#, ''], [#, 305]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [10, '', 341]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [10, 341, [#, ''], [#, 341]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [11, '', 392]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [11, 392, [#, ''], [#, 392]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [12, '', 425]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [12, 425, [#, ''], [#, 425]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [13, '', 506]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [13, 506, [#, ''], [#, 506]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [14, '', 587]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [14, 587, [#, ''], [#, 587]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [15, '', 947]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [15, 947, [#, ''], [#, 947]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [16, '', 10174]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [16, 10174, [#, ''], [#, 10174]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [17, '', 10457]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [17, 10457, [#, ''], [#, 10457]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [18, '', 10572]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [18, 10572, [#, ''], [#, 10572]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [19, '', 10667]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [19, 10667, [#, ''], [#, 10667]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [20, '', 10722]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [20, 10722, [#, ''], [#, 10722]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [21, '', 10774]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [21, 10774, [#, ''], [#, 10774]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [22, '', 10821]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [22, 10821, [#, ''], [#, 10821]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [23, '', 10853]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [23, 10853, [#, ''], [#, 10853]]). 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'150311_at_124', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [3, [#, [#, '143052_at_1816', 1], [#, '149464_at_1100', 1], [#, '142785_at_1174', 1], [#, '142029_at_45', 1], [#, '149466_at_2832', 1], [#, '149467_at_1882', 1], [#, '149468_at_757', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '147260_at_80', 3], [#, '147730_at_550', 3], [#, '155060_at_1472', 3], [#, '151873_at_2043', 4], [#, '152093_at_2053', 4], [#, '150311_at_247', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '143052_at_1742', 1], [#, '152622_at_824', 1], [#, '149458_at_1158', 1], [#, '149459_at_906', 1], [#, '154507_at_1873', 1], [#, '149463_at_2017', 1], [#, '149464_at_1134', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [5, [#, [#, '147260_at_76', 3], [#, '155060_at_1504', 3], [#, '148466_at_864', 3], [#, '151873_at_2023', 4], [#, '152093_at_2081', 4], [#, '150311_at_271', 7]]]). 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fbgn_exons2affy1_overlaps, [7, [#, [#, '143052_at_1703', 1], [#, '154319_at_927', 1], [#, '154993_at_1959', 1], [#, '149402_at_2878', 1], [#, '149403_at_625', 1], [#, '149408_at_1010', 1], [#, '149409_at_619', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '151429_at_270', 3], [#, '155060_at_1574', 3], [#, '142689_at_2342', 3], [#, '151873_at_1804', 4], [#, '152093_at_2177', 4], [#, '150311_at_350', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '150941_f_at_115', 1], [#, '142317_at_420', 1], [#, '141883_at_323', 1], [#, '149397_at_943', 1], [#, '149398_at_568', 1], [#, '152411_at_1798', 1], [#, '149399_at_1928', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '155060_at_1631', 3], [#, '151429_at_293', 3], [#, '147260_at_36', 3], [#, '152093_at_2220', 4], [#, '151873_at_1786', 4], [#, '150311_at_358', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '150941_f_at_113', 1], [#, '149380_at_1052', 1], [#, '149381_at_595', 1], [#, '149382_at_343', 1], [#, '149384_at_626', 1], [#, '149385_at_909', 1], [#, '149386_at_153', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '142689_at_2195', 3], [#, '147260_at_34', 3], [#, '141538_at_2111', 3], [#, '152093_at_2221', 4], [#, '151873_at_1747', 4], [#, '150311_at_405', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '150941_f_at_111', 1], [#, '149364_at_1814', 1], [#, '149365_at_276', 1], [#, '149368_at_173', 1], [#, '149371_at_1969', 1], [#, '149372_at_632', 1], [#, '149374_at_1908', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151429_at_351', 3], [#, '142689_at_2154', 3], [#, '141538_at_2086', 3], [#, '152093_at_2253', 4], [#, '151873_at_1723', 4], [#, '150311_at_406', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151224_f_at_40', 1], [#, '149352_at_2845', 1], [#, '155039_at_1822', 1], [#, '149354_at_228', 1], [#, '153107_at_1501', 1], [#, '149355_at_446', 1], [#, '152216_at_1907', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '141538_at_2050', 3], [#, '147260_at_29', 3], [#, '151429_at_444', 3], [#, '151873_at_1696', 4], [#, '152093_at_2286', 4], [#, '150311_at_428', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '143052_at_1570', 1], [#, '153297_at_1146', 1], [#, '141292_at_956', 1], [#, '155136_at_3280', 1], [#, '151994_at_924', 1], [#, '154820_at_469', 1], [#, '152906_at_2090', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '155060_at_1834', 3], [#, '147260_at_27', 3], [#, '142689_at_2057', 3], [#, '151873_at_1681', 4], [#, '152093_at_2365', 4], [#, '150311_at_513', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '143052_at_1561', 1], [#, '149339_at_461', 1], [#, '142566_at_6907', 1], [#, '149340_at_389', 1], [#, '149341_at_1305', 1], [#, '149343_at_547', 1], [#, '153316_at_970', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '141538_at_1972', 3], [#, '155060_at_1844', 3], [#, '147260_at_21', 3], [#, '152093_at_2369', 4], [#, '151873_at_1656', 4], [#, '150311_at_569', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '143052_at_1547', 1], [#, '153677_at_593', 1], [#, '142725_at_3484', 1], [#, '154418_at_2357', 1], [#, '149337_at_1771', 1], [#, '149338_at_114', 1], [#, '153664_at_1123', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '155060_at_1866', 3], [#, '147260_at_19', 3], [#, '141538_at_1905', 3], [#, '151873_at_1630', 4], [#, '152093_at_2425', 4], [#, '150311_at_588', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '143052_at_1488', 1], [#, '142725_at_3437', 1], [#, '154418_at_2421', 1], [#, '149337_at_1722', 1], [#, '149338_at_101', 1], [#, '153664_at_1167', 1], [#, '149339_at_383', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '151193_f_at_66', 3], [#, '151241_f_at_31', 5], [#, '151193_f_at_70', 6], [#, '151224_f_at_40', 7], [#, '150941_f_at_119', 7], [#, '150941_f_at_115', 7]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '143052_at_1399', 1], [#, '154464_at_2230', 1], [#, '152047_at_1146', 1], [#, '150835_at_1439', 1], [#, '154168_at_1052', 1], [#, '153210_at_1520', 1], [#, '150817_at_565', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '142169_at_450', 2], [#, '146155_at_129', 2], [#, '152590_at_972', 2], [#, '142115_at_370', 2], [#, '143730_at_1670', 2], [#, '150941_f_at_115', 9]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '143052_at_1395', 1], [#, '151270_r_at_25', 1], [#, '151257_at_31', 1], [#, '151250_at_222', 1], [#, '151229_at_145', 1], [#, '151212_i_at_63', 1], [#, '151207_r_at_79', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '142667_at_1666', 2], [#, '142844_at_1801', 2], [#, '143730_at_1655', 2], [#, '146200_at_740', 2], [#, '145665_at_260', 2], [#, '150941_f_at_113', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '143052_at_1376', 1], [#, '146970_at_795', 1], [#, '142323_at_349', 1], [#, '152548_at_1257', 1], [#, '142085_at_360', 1], [#, '151839_at_572', 1], [#, '147900_at_1316', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '141971_at_425', 2], [#, '152590_at_890', 2], [#, '150643_at_593', 2], [#, '150117_at_272', 2], [#, '146155_at_95', 2], [#, '141331_at_764', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '143052_at_1311', 1], [#, '146844_at_45', 1], [#, '152619_at_980', 1], [#, '147717_at_296', 1], [#, '141654_at_949', 1], [#, '147704_at_309', 1], [#, '151140_at_34', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '152322_at_1081', 2], [#, '150574_at_674', 2], [#, '142012_at_515', 2], [#, '150611_at_681', 2], [#, '146094_at_3507', 2], [#, '143040_at_1502', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '141890_at_423', 1], [#, '146741_at_332', 1], [#, '146978_s_at_613', 1], [#, '142001_r_at_17', 1], [#, '152057_at_746', 1], [#, '153061_at_3626', 1], [#, '147846_at_517', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '143730_at_1571', 2], [#, '143071_at_199', 2], [#, '153690_at_1496', 2], [#, '146572_at_1248', 2], [#, '151196_r_at_69', 2], [#, '142734_at_582', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '154290_at_1576', 1], [#, '150536_at_1846', 1], [#, '142057_at_306', 1], [#, '149536_at_287', 1], [#, '142647_at_483', 1], [#, '152342_at_1443', 1], [#, '150858_at_1203', 1]]]). 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fbgn_exons2affy1_overlaps, [24, [#, [#, '152828_at_1322', 2], [#, '145513_at_1132', 2], [#, '145665_at_155', 2], [#, '145804_at_94', 2], [#, '146094_at_3402', 2], [#, '151831_at_920', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [24, [#, [#, '152253_at_1253', 1], [#, '151549_i_at_495', 1], [#, '142287_at_5287', 1], [#, '150858_at_1274', 1], [#, '152342_at_1587', 1], [#, '142647_at_365', 1], [#, '149536_at_82', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '145121_at_1044', 2], [#, '152828_at_1374', 2], [#, '145513_at_1115', 2], [#, '145665_at_112', 2], [#, '145804_at_88', 2], [#, '143367_at_1268', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '152253_at_1277', 1], [#, '152342_at_1612', 1], [#, '142647_at_311', 1], [#, '149536_at_79', 1], [#, '142057_at_440', 1], [#, '150536_at_1708', 1], [#, '150142_at_1308', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '142968_at_1016', 2], [#, '147307_at_1054', 2], [#, '152828_at_1410', 2], [#, '145513_at_1081', 2], [#, '145804_at_83', 2], [#, '152030_at_2454', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '151555_at_452', 1], [#, '150321_at_786', 1], [#, '149984_at_574', 1], [#, '150288_at_440', 1], [#, '154729_at_1256', 1], [#, '150235_at_482', 1], [#, '153559_at_1188', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '142051_at_710', 2], [#, '143071_at_395', 2], [#, '153690_at_1701', 2], [#, '152030_at_2472', 2], [#, '148950_at_1101', 2], [#, '146572_at_1489', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '151555_at_477', 1], [#, '143703_at_549', 1], [#, '150198_at_145', 1], [#, '153568_at_2595', 1], [#, '153408_at_895', 1], [#, '154631_at_2296', 1], [#, '149802_at_35', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '151831_at_1098', 2], [#, '143071_at_435', 2], [#, '142051_at_734', 2], [#, '153690_at_1718', 2], [#, '142946_at_186', 2], [#, '148950_at_1027', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '154840_at_235', 1], [#, '149689_at_838', 1], [#, '152285_at_955', 1], [#, '151626_at_139', 1], [#, '151157_at_129', 1], [#, '151986_at_1676', 1], [#, '149373_at_477', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '143040_at_1070', 2], [#, '148950_at_1005', 2], [#, '152322_at_1333', 2], [#, '142209_at_639', 2], [#, '143367_at_1495', 2], [#, '153005_at_1202', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '154840_at_217', 1], [#, '151546_i_at_74', 1], [#, '145929_at_1640', 1], [#, '151417_at_35', 1], [#, '145917_at_142', 1], [#, '154703_at_1319', 1], [#, '145904_at_869', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '151241_f_at_37', 1], [#, '145456_at_322', 1], [#, '142630_at_415', 1], [#, '148015_at_1581', 1], [#, '153230_at_2930', 2], [#, '154681_at_1547', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '153483_at_641', 1], [#, '150941_f_at_90', 1], [#, '144004_at_5787', 1], [#, '144775_at_57', 1], [#, '144816_at_1278', 1], [#, '143155_at_2478', 1], [#, '148015_at_1581', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_exons2affy2_overlaps, [14]). +fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy2_overlaps, [4149]). +fb_tsv_pred_stats('total-rows', fbgn_exons2affy2_overlaps, [12905]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [1, 8719, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [2, 1595, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [3, 1248, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [4, 1045, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [5, 922, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [6, 830, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [7, 752, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [8, 699, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [9, 639, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [10, 573, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [11, 508, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [12, 442, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [13, 358, object]). +fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [14, 207, object]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [1, '', 3969]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [1, 3969, [#, ''], [#, 3969]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [2, '', 11248]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [2, 11248, [#, ''], [#, 11248]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [3, '', 11607]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [3, 11607, [#, ''], [#, 11607]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [4, '', 11816]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [4, 11816, [#, ''], [#, 11816]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [5, '', 11943]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [5, 11943, [#, ''], [#, 11943]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [6, '', 12036]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [6, 12036, [#, ''], [#, 12036]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [7, '', 12116]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [7, 12116, [#, ''], [#, 12116]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [8, '', 12171]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [8, 12171, [#, ''], [#, 12171]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [9, '', 12231]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [9, 12231, [#, ''], [#, 12231]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [10, '', 12300]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [10, 12300, [#, ''], [#, 12300]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [11, '', 12366]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [11, 12366, [#, ''], [#, 12366]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [12, '', 12437]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [12, 12437, [#, ''], [#, 12437]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [13, '', 12525]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [13, 12525, [#, ''], [#, 12525]]). +fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [14, '', 12686]). +fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [14, 12686, [#, ''], [#, 12686]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1630536_at_1664', 3], [#, '1633941_a_at_2332', 3], [#, '1632394_s_at_2089', 3], [#, '1625692_s_at_1888', 4], [#, '1627164_at_3410', 4], [#, '1625897_s_at_1066', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1637813_at_4186', 1], [#, '1638283_at_2407', 1], [#, '1639086_s_at_1819', 1], [#, '1631434_at_334', 1], [#, '1634855_s_at_1654', 1], [#, '1636657_at_473', 1], [#, '1641712_at_1957', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1635578_at_1116', 2], [#, '1633941_a_at_2295', 3], [#, '1631833_at_1721', 3], [#, '1625692_s_at_1832', 4], [#, '1635572_at_641', 4], [#, '1625897_s_at_1127', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1636558_a_at_1881', 1], [#, '1628490_at_857', 1], [#, '1641656_at_713', 1], [#, '1630618_at_2197', 1], [#, '1625101_at_335', 1], [#, '1635901_at_939', 1], [#, '1631798_s_at_1021', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1631351_s_at_1022', 2], [#, '1626491_at_1540', 2], [#, '1635572_at_608', 3], [#, '1633941_a_at_2232', 3], [#, '1631833_at_1705', 3], [#, '1625897_s_at_1142', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1636558_a_at_1850', 1], [#, '1631522_x_at_66', 1], [#, '1632440_at_286', 1], [#, '1625460_s_at_89', 1], [#, '1625783_at_502', 1], [#, '1626735_at_200', 1], [#, '1628502_at_164', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1632950_at_1094', 2], [#, '1629590_at_807', 2], [#, '1635578_at_1046', 2], [#, '1635572_at_529', 3], [#, '1631833_at_1657', 3], [#, '1625897_s_at_1160', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1636558_a_at_1823', 1], [#, '1629951_at_775', 1], [#, '1627721_at_1681', 1], [#, '1632946_at_1358', 1], [#, '1630788_at_1473', 1], [#, '1629262_at_502', 1], [#, '1628625_at_1245', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636445_at_196', 2], [#, '1635578_at_1031', 2], [#, '1634667_at_2047', 2], [#, '1631833_at_1617', 3], [#, '1635572_at_481', 3], [#, '1625897_s_at_1229', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636558_a_at_1742', 1], [#, '1636314_at_387', 1], [#, '1625214_at_592', 1], [#, '1633462_at_1757', 1], [#, '1638793_at_441', 1], [#, '1630993_at_814', 1], [#, '1637693_at_840', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636445_at_205', 2], [#, '1628766_at_1592', 2], [#, '1627958_at_364', 2], [#, '1631833_at_1553', 3], [#, '1635572_at_448', 3], [#, '1625897_s_at_1282', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636558_a_at_1725', 1], [#, '1629127_at_687', 1], [#, '1632948_x_at_741', 1], [#, '1631596_at_2406', 1], [#, '1623590_s_at_2676', 1], [#, '1638445_a_at_4372', 1], [#, '1632739_at_505', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1627427_s_at_1090', 2], [#, '1626491_at_1395', 2], [#, '1634933_s_at_300', 2], [#, '1635572_at_432', 3], [#, '1631833_at_1528', 3], [#, '1625897_s_at_1292', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1636558_a_at_1709', 1], [#, '1625051_at_611', 1], [#, '1634488_s_at_341', 1], [#, '1630421_at_597', 1], [#, '1628563_at_1739', 1], [#, '1636412_at_2651', 1], [#, '1634418_at_1457', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1627958_at_416', 2], [#, '1626732_at_695', 2], [#, '1626038_at_1253', 2], [#, '1635572_at_393', 3], [#, '1631833_at_1513', 3], [#, '1625897_s_at_1337', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1636558_a_at_1571', 1], [#, '1632338_a_at_1205', 1], [#, '1641119_at_364', 1], [#, '1627824_at_101', 1], [#, '1632926_at_75', 1], [#, '1631364_at_518', 1], [#, '1639058_at_120', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1630406_at_385', 2], [#, '1631351_s_at_947', 2], [#, '1628766_at_1690', 2], [#, '1631833_at_1487', 3], [#, '1635572_at_378', 3], [#, '1625897_s_at_1362', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1636558_a_at_1561', 1], [#, '1632926_at_17', 1], [#, '1631364_at_547', 1], [#, '1639058_at_103', 1], [#, '1628447_at_492', 1], [#, '1626455_s_at_399', 1], [#, '1638766_at_109', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1630406_at_337', 2], [#, '1629590_at_1045', 2], [#, '1633270_at_394', 2], [#, '1631833_at_1469', 3], [#, '1635572_at_297', 3], [#, '1625897_s_at_1444', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1636558_a_at_1482', 1], [#, '1635345_at_50', 1], [#, '1634677_at_643', 1], [#, '1635112_at_279', 1], [#, '1641708_at_3032', 1], [#, '1629586_at_1283', 1], [#, '1640473_at_4678', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1632147_at_448', 2], [#, '1629590_at_1085', 2], [#, '1634176_a_at_438', 2], [#, '1635572_at_234', 3], [#, '1631833_at_1450', 3], [#, '1625897_s_at_1488', 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1636558_a_at_1425', 1], [#, '1638214_at_467', 1], [#, '1637070_at_754', 1], [#, '1636893_at_55', 1], [#, '1639804_at_1221', 1], [#, '1628992_at_20', 1], [#, '1627697_at_763', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1634933_s_at_139', 2], [#, '1627958_at_512', 2], [#, '1627427_s_at_891', 2], [#, '1627339_at_219', 2], [#, '1631833_at_1435', 3], [#, '1635572_at_209', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1636558_a_at_1397', 1], [#, '1638214_at_453', 1], [#, '1637070_at_778', 1], [#, '1636893_at_43', 1], [#, '1639804_at_1258', 1], [#, '1628992_at_17', 1], [#, '1627697_at_738', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1634933_s_at_106', 2], [#, '1632147_at_514', 2], [#, '1633837_at_546', 2], [#, '1627339_at_124', 2], [#, '1631833_at_1404', 3], [#, '1635572_at_157', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1636558_a_at_1379', 1], [#, '1638214_at_432', 1], [#, '1636893_at_32', 1], [#, '1639804_at_1271', 1], [#, '1628992_at_15', 1], [#, '1627697_at_714', 1], [#, '1635345_at_43', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1627339_at_73', 2], [#, '1626491_at_1063', 2], [#, '1634159_s_at_35', 2], [#, '1626732_at_641', 2], [#, '1631833_at_1383', 3], [#, '1635572_at_129', 3]]]). +fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1636558_a_at_1365', 1], [#, '1628563_at_1922', 1], [#, '1636412_at_2551', 1], [#, '1634418_at_1571', 1], [#, '1632338_a_at_1456', 1], [#, '1641119_at_581', 1], [#, '1626455_s_at_584', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp_expanded, [11]). +fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp_expanded, [0]). +fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp_expanded, [35732]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [1, 1, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [2, 27, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [3, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [4, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [5, 11358, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [6, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [7, 9, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [8, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [9, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [10, 30803, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [11, 30803, object]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [5, '', 11174]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [5, 11174, [#, ''], [#, 11174]]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [9, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [10, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [10, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [11, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [11, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, 'C_D_box_snoRNA_gene', 145], [#, tRNA_gene, 312], [#, pseudogene, 365], [#, antisense_lncRNA_gene, 621], [#, miRNA_gene, 747], [#, lncRNA_gene, 2374], [#, protein_coding_gene, 30802]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, mt_LSU_rRNA_gene, 1], [#, mt_SSU_rRNA_gene, 1], [#, 'RNase_MRP_RNA_gene', 1], [#, cytosolic_rRNA_28S_gene, 2], [#, 'RNA_7SK_gene', 2]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, heph, 25], [#, trol, 25], [#, 'CAP', 28], [#, 'Svil', 31], [#, 'mod(mdg4)', 31], [#, para, 60], [#, 'Dscam1', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, 'CG16953', 1], [#, 'Tsen2', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, hephaestus, 25], [#, 'CAP', 28], [#, 'modifier of mdg4', 31], [#, 'Supervillin', 31], [#, paralytic, 60], [#, 'Down syndrome cell adhesion molecule 1', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, 'long non-coding RNA:CR46535', 1], [#, 'Gustatory receptor 22e', 1], [#, 'long non-coding RNA:CR45471', 1], [#, 'Gustatory receptor 36a', 1], [#, 'Gustatory receptor 36b', 1], [#, 'Gustatory receptor 36c', 1], [#, 'Gustatory receptor 59a', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG31000', 25], [#, 'CG33950', 25], [#, 'CG18408', 28], [#, 'CG45186', 31], [#, 'CG32491', 31], [#, 'CG9907', 60], [#, 'CG17800', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG16953', 1], [#, 'CG31812', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485], [#, ncRNA, 3059], [#, mRNA, 30802]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, snRNA, 32], [#, rRNA, 115], [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'p115-PB', 1], [#, 'meso18E-PA', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PC', 1], [#, 'rept-PB', 1], [#, 'a-PA', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'a-PA', 1], [#, 'meso18E-PC', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PA', 1], [#, 'p115-PB', 1], [#, 'p115-PA', 1], [#, 'pins-PA', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp, [3]). +fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp, [0]). +fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp, [35732]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [1, 17901, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [2, 35732, object]). +fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [3, 30803, object]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp, [3, '', 4930]). +fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [3, 4930, [#, ''], [#, 4930]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_gleanr, [4]). +fb_tsv_pred_stats('duplicated-rows', fbgn_gleanr, [535]). +fb_tsv_pred_stats('total-rows', fbgn_gleanr, [174893]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [1, 11, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [2, 174055, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [3, 174055, object]). +fb_tsv_pred_stats('unique-values', fbgn_gleanr, [4, 174322, object]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_gleanr, [4, 0, [], []]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [1, [#, [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038], [#, 'Dpse', 16475], [#, 'Dyak', 16483], [#, 'Dsec', 16945], [#, 'Dper', 17373]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [1, [#, [#, 'Dvir', 14755], [#, 'Dmoj', 14922], [#, 'Dgri', 15319], [#, 'Dana', 15329], [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [2, [#, [#, 'Dpse\\GA30155', 4], [#, 'Dpse\\GA30065', 4], [#, 'Dpse\\GA30499', 4], [#, 'Dpse\\GA30462', 4], [#, 'Dpse\\GA30119', 5], [#, 'Dpse\\GA30479', 5], [#, 'Dpse\\GA30442', 11]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [2, [#, [#, 'Dper\\GL22947', 1], [#, 'Dwil\\GK16453', 1], [#, 'Dwil\\GK11213', 1], [#, 'Dwil\\GK16551', 1], [#, 'Dwil\\GK11264', 1], [#, 'Dwil\\GK11214', 1], [#, 'Dwil\\GK11265', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0263057', 4], [#, 'FBgn0263238', 4], [#, 'FBgn0265036', 4], [#, 'FBgn0264756', 4], [#, 'FBgn0262499', 5], [#, 'FBgn0264773', 5], [#, 'FBgn0264579', 11]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0160537', 1], [#, 'FBgn0218455', 1], [#, 'FBgn0213224', 1], [#, 'FBgn0218553', 1], [#, 'FBgn0213275', 1], [#, 'FBgn0213225', 1], [#, 'FBgn0213276', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [4, [#, [#, dgri_GLEANR_4274, 2], [#, dana_GLEANR_19894, 2], [#, dgri_GLEANR_7321, 2], [#, dgri_GLEANR_14174, 2], [#, dpse_GLEANR_5123, 3], [#, dpse_GLEANR_4701, 4], [#, dpse_GLEANR_8878, 4]]]). +fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [4, [#, [#, dsim_GLEANR_6342, 1], [#, dwil_GLEANR_16628, 1], [#, dwil_GLEANR_11555, 1], [#, dwil_GLEANR_11556, 1], [#, dwil_GLEANR_11460, 1], [#, dwil_GLEANR_11461, 1], [#, dwil_GLEANR_11557, 1]]]). +fb_tsv_pred_stats('num-columns', fbgn_NAseq_Uniprot, [9]). +fb_tsv_pred_stats('duplicated-rows', fbgn_NAseq_Uniprot, [0]). +fb_tsv_pred_stats('total-rows', fbgn_NAseq_Uniprot, [1316132]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [1, 214968, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [2, 557, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [3, 214968, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [4, 762485, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [5, 69341, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [6, 193395, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [7, 208900, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [8, 34349, object]). +fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [9, 30241, object]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [4, '', 438122]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [4, 438122, [#, ''], [#, 438122]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [5, '', 1246520]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [5, 1246520, [#, ''], [#, 1246520]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [6, '', 1121258]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [6, 1121258, [#, ''], [#, 1121258]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [7, '', 1107233]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [7, 1107233, [#, ''], [#, 1107233]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [8, '', 1281783]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [8, 1281783, [#, ''], [#, 1281783]]). +fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [9, '', 1285892]). +fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [9, 1285892, [#, ''], [#, 1285892]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, sta, 1332], [#, 'RpL5', 1362], [#, alphaTub84B, 1442], [#, 'Hsc70-4', 1611], [#, ninaE, 1699], [#, eEF2, 2370], [#, eEF1alpha1, 2383]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, 'Hsap\\FSBP', 1], [#, 'Dyak\\GE14653', 1], [#, 'Dyak\\GE14652', 1], [#, 'Dere\\GG16178', 1], [#, 'Dyak\\GE14651', 1], [#, 'Dyak\\GE14650', 1], [#, 'Dyak\\GE14649', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Dper', 34397], [#, 'Dmoj', 34929], [#, 'Dvir', 35196], [#, 'Dsim', 37463], [#, 'Dana', 38929], [#, 'Dyak', 39546], [#, 'Dmel', 938032]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Cpac', 1], [#, 'Hvul', 1], [#, 'Zghe', 1], [#, 'Dhye', 1], [#, 'Dabu', 1], [#, 'Xlae', 1], [#, 'Cfum', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0003517', 1332], [#, 'FBgn0064225', 1362], [#, 'FBgn0003884', 1442], [#, 'FBgn0266599', 1611], [#, 'FBgn0002940', 1699], [#, 'FBgn0000559', 2370], [#, 'FBgn0284245', 2383]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0289485', 1], [#, 'FBgn0232248', 1], [#, 'FBgn0232247', 1], [#, 'FBgn0108413', 1], [#, 'FBgn0232246', 1], [#, 'FBgn0232245', 1], [#, 'FBgn0232244', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'CH379071', 439], [#, 'AE014298', 5350], [#, 'AE014134', 5651], [#, 'AE014296', 5875], [#, 'AE013599', 6054], [#, 'AE014297', 7206]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'J01122', 1], [#, 'GH739917', 1], [#, 'GH740238', 1], [#, 'GH740504', 1], [#, 'GH740582', 1], [#, 'GH740722', 1], [#, 'GH741128', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AAA28968', 9], [#, 'CAA38960', 9], [#, 'AAA28969', 9], [#, 'AAA28966', 9], [#, 'AAC47002', 9], [#, 'AAA28425', 10]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AFH08132', 1], [#, 'AAG22409', 1], [#, 'AAL28803', 1], [#, 'AAL57756', 1], [#, 'AAF46261', 1], [#, 'AAF46262', 1], [#, 'AAM29624', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'P02283', 24], [#, 'P84052', 31], [#, 'Q76FD7', 40], [#, 'Q76FE2', 47], [#, 'Q76N00', 50], [#, 'Q76FD9', 65]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'A1ZAK1', 1], [#, 'B4R037', 1], [#, 'B4R038', 1], [#, 'B4R040', 1], [#, 'B4R043', 1], [#, 'B4R044', 1], [#, 'B4R047', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6632090.0, 1], [#, 6627682.0, 1], [#, 6631334.0, 1], [#, 6631316.0, 1], [#, 6634144.0, 1], [#, 6624472.0, 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6611558.0, 1], [#, 6634144.0, 1], [#, 6631316.0, 1], [#, 6631334.0, 1], [#, 6627682.0, 1], [#, 6632090.0, 1], [#, 6632175.0, 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_168111', 1], [#, 'NM_168136', 1], [#, 'NM_168145', 1], [#, 'NM_168144', 1], [#, 'NM_001169879', 1], [#, 'NM_134950', 2]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_141332', 1], [#, 'NM_001274510', 1], [#, 'NM_001274509', 1], [#, 'NM_001259707', 1], [#, 'NM_001169879', 1], [#, 'NM_168112', 1], [#, 'NM_168113', 1]]]). +fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_001137539', 1], [#, 'NP_001287647', 1], [#, 'NP_001287648', 1], [#, 'NP_001104474', 1], [#, 'NP_001188370', 1], [#, 'NP_001287646', 1]]]). +fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_648102', 1], [#, 'NP_001287648', 1], [#, 'NP_001287647', 1], [#, 'NP_001137539', 1], [#, 'NP_001104473', 1], [#, 'NP_001104472', 1], [#, 'NP_001104471', 1]]]). +fb_tsv_pred_stats('num-columns', gene_functional_complementation, [5]). +fb_tsv_pred_stats('duplicated-rows', gene_functional_complementation, [0]). +fb_tsv_pred_stats('total-rows', gene_functional_complementation, [463]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [1, 319, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [2, 319, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [3, 376, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [4, 376, object]). +fb_tsv_pred_stats('unique-values', gene_functional_complementation, [5, 392, object]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_functional_complementation, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [1, [#, [#, 'Lrrk', 5], [#, 'Marf', 5], [#, 'Pink1', 5], [#, oc, 7], [#, 'Nrg', 7], [#, cpx, 8], [#, 'TBPH', 8]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [1, [#, [#, 'ATP6AP2', 1], [#, ci, 1], [#, cindr, 1], [#, clu, 1], [#, cn, 1], [#, cpa, 1], [#, csw, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0038816', 5], [#, 'FBgn0029870', 5], [#, 'FBgn0029891', 5], [#, 'FBgn0004102', 7], [#, 'FBgn0264975', 7], [#, 'FBgn0041605', 8], [#, 'FBgn0025790', 8]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0037671', 1], [#, 'FBgn0004859', 1], [#, 'FBgn0027598', 1], [#, 'FBgn0034087', 1], [#, 'FBgn0000337', 1], [#, 'FBgn0034577', 1], [#, 'FBgn0000382', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\MFN2', 4], [#, 'Hsap\\SOD1', 4], [#, 'Hsap\\L1CAM', 4], [#, 'Hsap\\PARK7', 4], [#, 'Hsap\\PINK1', 5], [#, 'Hsap\\LRRK2', 5], [#, 'Hsap\\TARDBP', 7]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\ATP6AP2', 1], [#, 'Hsap\\EIF4A2', 1], [#, 'Hsap\\DROSHA', 1], [#, 'Hsap\\GRAP', 1], [#, 'Hsap\\SUPT16H', 1], [#, 'Hsap\\SRCAP', 1], [#, 'Hsap\\PIN1', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0265221', 4], [#, 'FBgn0024960', 4], [#, 'FBgn0026071', 4], [#, 'FBgn0086735', 4], [#, 'FBgn0086479', 5], [#, 'FBgn0262113', 5], [#, 'FBgn0261084', 7]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0262153', 1], [#, 'FBgn0289163', 1], [#, 'FBgn0289120', 1], [#, 'FBgn0286886', 1], [#, 'FBgn0289345', 1], [#, 'FBgn0283711', 1], [#, 'FBgn0288530', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0216943', 3], [#, 'FBrf0210782', 3], [#, 'FBrf0146918', 3], [#, 'FBrf0242427', 3], [#, 'FBrf0184161', 4], [#, 'FBrf0252066', 4], [#, 'FBrf0212111', 4]]]). +fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0211368', 1], [#, 'FBrf0101988', 1], [#, 'FBrf0193931', 1], [#, 'FBrf0227402', 1], [#, 'FBrf0230449', 1], [#, 'FBrf0188025', 1], [#, 'FBrf0174932', 1]]]). +fb_tsv_pred_stats('num-columns', gene_genetic_interactions, [6]). +fb_tsv_pred_stats('duplicated-rows', gene_genetic_interactions, [0]). +fb_tsv_pred_stats('total-rows', gene_genetic_interactions, [20321]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [1, 2958, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [2, 2958, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [3, 4615, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [4, 4615, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [5, 2, object]). +fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [6, 5428, object]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [6, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [1, [#, [#, 'Egfr', 168], [#, pbl, 173], [#, 'H', 173], [#, pnr, 174], [#, w, 181], [#, 'Ras85D', 365], [#, 'N', 384]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [1, [#, [#, 'Fit1', 1], [#, 'Gtpx', 1], [#, 'kat-60L1', 1], [#, 'Abl|fax', 1], [#, 'rpr|hid', 1], [#, 'Gfrl', 1], [#, 'mod(mdg4)|sc', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0003731', 168], [#, 'FBgn0003041', 173], [#, 'FBgn0001169', 173], [#, 'FBgn0003117', 174], [#, 'FBgn0003996', 181], [#, 'FBgn0003205', 365], [#, 'FBgn0004647', 384]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0035498', 1], [#, 'FBgn0035438', 1], [#, 'FBgn0037375', 1], [#, 'FBgn0000017|FBgn0014163', 1], [#, 'FBgn0011706|FBgn0003997', 1], [#, 'FBgn0262869', 1], [#, 'FBgn0002781|FBgn0004170', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [3, [#, [#, wg, 110], [#, puc, 117], [#, 'Ras85D', 141], [#, 'Egfr', 158], [#, 'Diap1', 163], [#, 'N', 174], [#, bsk, 181]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [3, [#, [#, 'Su(tor)278-22', 1], [#, 'CG32982', 1], [#, 'CG15599', 1], [#, 'Su(E1)-A', 1], [#, 'mir-13b-2', 1], [#, 'EP1095', 1], [#, 'S(Sev-CycE)D28', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0284084', 110], [#, 'FBgn0243512', 117], [#, 'FBgn0003205', 141], [#, 'FBgn0003731', 158], [#, 'FBgn0260635', 163], [#, 'FBgn0004647', 174], [#, 'FBgn0000229', 181]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0026335', 1], [#, 'FBgn0052982', 1], [#, 'FBgn0030667', 1], [#, 'FBgn0262767', 1], [#, 'FBgn0262421', 1], [#, 'FBgn0062701', 1], [#, 'FBgn0041783', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). +fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0190765', 83], [#, 'FBrf0188528', 88], [#, 'FBrf0190751', 89], [#, 'FBrf0187664', 105], [#, 'FBrf0147055', 149], [#, 'FBrf0199094', 151], [#, 'FBrf0241270', 160]]]). +fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0221584', 1], [#, 'FBrf0231072', 1], [#, 'FBrf0102734', 1], [#, 'FBrf0190193', 1], [#, 'FBrf0229219', 1], [#, 'FBrf0226148', 1], [#, 'FBrf0208690', 1]]]). +fb_tsv_pred_stats('num-columns', gene_groups_HGNC, [4]). +fb_tsv_pred_stats('duplicated-rows', gene_groups_HGNC, [0]). +fb_tsv_pred_stats('total-rows', gene_groups_HGNC, [1711]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [1, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [2, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [3, 1699, object]). +fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [4, 506, object]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_groups_HGNC, [4, '', 1192]). +fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [4, 1192, [#, ''], [#, 1192]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000526', 2], [#, 'FBgg0000112', 2], [#, 'FBgg0000738', 2], [#, 'FBgg0000588', 2], [#, 'FBgg0000792', 2], [#, 'FBgg0000083', 3], [#, 'FBgg0000279', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000451', 1], [#, 'FBgg0000651', 1], [#, 'FBgg0001307', 1], [#, 'FBgg0000697', 1], [#, 'FBgg0000072', 1], [#, 'FBgg0000437', 1], [#, 'FBgg0001352', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [2, [#, [#, 'SM', 2], [#, 'INX', 2], [#, 'PRDTF', 2], [#, 'CAC-U', 2], [#, 'E2FTF', 2], [#, 'SYT', 3], [#, 'RPD3-HDA1', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [2, [#, [#, 'TRNA-C-THR-CGT', 1], [#, 'NAT', 1], [#, 'APAS', 1], [#, 'SLC33', 1], [#, 'ADAM', 1], [#, 'TRNA-C-LEU-TAA', 1], [#, 'N-GH', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [3, [#, [#, 'SPLICEOSOMAL SM PROTEINS', 2], [#, 'INNEXINS', 2], [#, 'PAIRED TRANSCRIPTION FACTORS', 2], [#, 'UNCLASSIFIED CALCIUM CHANNEL-FORMING SUBUNITS', 2], [#, 'E2F TRANSCRIPTION FACTORS', 2], [#, 'SYNAPTOTAGMINS & SYNAPTOTAGMIN-LIKE PROTEINS', 3], [#, 'RPD3/HDA1 LYSINE DEACETYLASES', 3]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [3, [#, [#, 'CYTOSOLIC THREONINE-CGT TRANSFER RNAS', 1], [#, 'N-TERMINAL ACETYLTRANSFERASE CATALYTIC SUBUNITS', 1], [#, 'ASPARAGINASES', 1], [#, 'SLC33 ACETYL-COA TRANSPORTERS', 1], [#, 'ADAM METALLOPROTEASES', 1], [#, 'CYTOSOLIC LEUCINE-TAA TRANSFER RNAS', 1], [#, 'N-GLYCOSYL HYDROLASES', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [4, [#, [#, 1281.0, 2], [#, 363.0, 2], [#, 434.0, 2], [#, 816.0, 2], [#, 1254.0, 2], [#, 669.0, 2]]]). +fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [4, [#, [#, 346.0, 1], [#, 1654.0, 1], [#, 1585.0, 1], [#, 1419.0, 1], [#, 2154.0, 1], [#, 262.0, 1], [#, 1027.0, 1]]]). +fb_tsv_pred_stats('num-columns', gene_group_data, [7]). +fb_tsv_pred_stats('duplicated-rows', gene_group_data, [0]). +fb_tsv_pred_stats('total-rows', gene_group_data, [10957]). +fb_tsv_pred_stats('unique-values', gene_group_data, [1, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [2, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [3, 1629, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [4, 389, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [5, 389, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [6, 8251, object]). +fb_tsv_pred_stats('unique-values', gene_group_data, [7, 8251, object]). +fb_tsv_pred_stats('missing-values', gene_group_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_group_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_group_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [4, '', 1106]). +fb_tsv_pred_stats('missing-values', gene_group_data, [4, 1106, [#, ''], [#, 1106]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [5, '', 1106]). +fb_tsv_pred_stats('missing-values', gene_group_data, [5, 1106, [#, ''], [#, 1106]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [6, '', 405]). +fb_tsv_pred_stats('missing-values', gene_group_data, [6, 405, [#, ''], [#, 405]]). +fb_tsv_pred_stats('null-value-count', gene_group_data, [7, '', 405]). +fb_tsv_pred_stats('missing-values', gene_group_data, [7, 405, [#, ''], [#, 405]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [1, [#, [#, 'FBgg0000128', 98], [#, 'FBgg0001176', 105], [#, 'FBgg0001186', 106], [#, 'FBgg0001078', 114], [#, 'FBgg0000097', 120], [#, 'FBgg0001077', 136], [#, 'FBgg0000732', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [1, [#, [#, 'FBgg0001756', 1], [#, 'FBgg0000834', 1], [#, 'FBgg0001677', 1], [#, 'FBgg0000396', 1], [#, 'FBgg0000921', 1], [#, 'FBgg0000512', 1], [#, 'FBgg0000662', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [2, [#, [#, 'E3-RING-U', 98], [#, 'CPR', 105], [#, 'CBD', 106], [#, 'SP-T', 114], [#, 'OR', 120], [#, 'S1A-NPH', 136], [#, 'ZF-C2H2', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [2, [#, [#, 'UFM1', 1], [#, 'GH47', 1], [#, 'GH99', 1], [#, 'TRNA-C-ASP', 1], [#, 'MDH', 1], [#, 'KCN', 1], [#, 'SLC7', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [3, [#, [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'CPR CUTICLE PROTEIN FAMILY', 105], [#, 'CHITIN BINDING DOMAIN-CONTAINING PROTEINS', 106], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114], [#, 'ODORANT RECEPTORS', 120], [#, 'S1A NON-PEPTIDASE HOMOLOGS', 136], [#, 'C2H2 ZINC FINGER TRANSCRIPTION FACTORS', 272]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [3, [#, [#, 'UFM1 PROTEINS', 1], [#, 'CLASS I ALPHA-MANNOSIDASES', 1], [#, 'ENDO-ALPHA MANNOSIDASES', 1], [#, 'CYTOSOLIC ASPARTIC ACID TRANSFER RNAS', 1], [#, 'MALATE DEHYDROGENASES', 1], [#, 'POTASSIUM CHANNEL SUBUNITS', 1], [#, 'SLC7 FAMILY OF AMINO ACID TRANSPORTERS', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [4, [#, [#, 'FBgg0001178', 162], [#, 'FBgg0001841', 178], [#, 'FBgg0001076', 190], [#, 'FBgg0000729', 277], [#, 'FBgg0000537', 318], [#, 'FBgg0000686', 392]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [4, [#, [#, 'FBgg0001357', 1], [#, 'FBgg0000408', 1], [#, 'FBgg0001039', 1], [#, 'FBgg0001844', 2], [#, 'FBgg0001637', 2], [#, 'FBgg0000582', 2], [#, 'FBgg0000130', 2]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [5, [#, [#, 'CP', 162], [#, 'OXPHOS-V', 178], [#, 'S1AP', 190], [#, 'ZN-TF', 277], [#, 'SPL-INT', 318], [#, 'SLC', 392]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [5, [#, [#, 'ETH', 1], [#, 'TRNA-C-SEC', 1], [#, 'OXRPX', 1], [#, 'PSM-G', 2], [#, 'LADAC', 2], [#, 'IC', 2], [#, 'RP', 2]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [6, [#, [#, 'FBgn0261933', 10], [#, 'FBgn0000426', 13], [#, 'FBgn0261790', 13], [#, 'FBgn0261791', 13], [#, 'FBgn0023167', 13], [#, 'FBgn0262601', 13]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [6, [#, [#, 'FBgn0002565', 1], [#, 'FBgn0052671', 1], [#, 'FBgn0262518', 1], [#, 'FBgn0037364', 1], [#, 'FBgn0005586', 1], [#, 'FBgn0015791', 1], [#, 'FBgn0015795', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_group_data, [7, [#, [#, 'SmD1', 10], [#, 'SmF', 13], [#, 'SmE', 13], [#, 'SNRPG', 13], [#, 'SmD3', 13], [#, 'SmB', 13]]]). +fb_tsv_pred_stats('less-frequent', gene_group_data, [7, [#, [#, 'Lsp2', 1], [#, 'Rab9Fa', 1], [#, 'Rab8', 1], [#, 'Rab23', 1], [#, 'Rab3', 1], [#, 'Rab14', 1], [#, 'Rab7', 1]]]). +fb_tsv_pred_stats('num-columns', gene_map_table, [6]). +fb_tsv_pred_stats('duplicated-rows', gene_map_table, [0]). +fb_tsv_pred_stats('total-rows', gene_map_table, [245829]). +fb_tsv_pred_stats('unique-values', gene_map_table, [1, 542, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [2, 245829, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [3, 245829, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [4, 1716, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [5, 8138, object]). +fb_tsv_pred_stats('unique-values', gene_map_table, [6, 17721, object]). +fb_tsv_pred_stats('missing-values', gene_map_table, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_map_table, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_map_table, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [4, '', 208914]). +fb_tsv_pred_stats('missing-values', gene_map_table, [4, 208914, [#, ''], [#, 208914]]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [5, '', 222613]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [5, -, 105]). +fb_tsv_pred_stats('missing-values', gene_map_table, [5, 222718, [#, '', -], [#, 222613, 105]]). +fb_tsv_pred_stats('null-value-count', gene_map_table, [6, '', 227926]). +fb_tsv_pred_stats('missing-values', gene_map_table, [6, 227926, [#, ''], [#, 227926]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [1, [#, [#, 'Dper', 18137], [#, 'Dana', 18521], [#, 'Dwil', 18542], [#, 'Dyak', 19506], [#, 'Dsim', 20501], [#, 'Dpse', 22460], [#, 'Dmel', 31755]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [1, [#, [#, 'Dmos', 1], [#, 'Dsch', 1], [#, 'Dprg', 1], [#, 'Dpme', 1], [#, 'Dmds', 1], [#, 'Dbis', 1], [#, 'Dsut', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [4, [#, [#, '1-', 1161], [#, 'XL-', 1883], [#, '4-', 2182], [#, 'XR-', 2261], [#, '3-', 3567], [#, '2-', 4139]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [4, [#, [#, '2-[90]', 1], [#, '3-50-62', 1], [#, '1-38.4', 1], [#, '3-[76]', 1], [#, '3-[25]', 1], [#, '1-[61]', 1], [#, '2-[24]', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [5, [#, [#, '61-100', 47], [#, '39D5-39D5', 47], [#, '21E2-21E2', 73], [#, '56E2-56E2', 123], [#, '21-60', 132]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [5, [#, [#, '92A2-92A3', 1], [#, '18E5-18F1', 1], [#, '78A2-78B1', 1], [#, '95C5-95C8', 1], [#, '18B8-18B8', 1], [#, '61F2-61F3', 1], [#, '53A2-53A3', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_map_table, [6, [#, [#, '2R:10351533..10352161(-1)', 3], [#, '2R:13209809..13212237(-1)', 3], [#, '3R:21365609..21368279(1)', 3], [#, '2R:21667541..21669916(-1)', 4], [#, '3R:13813109..13814648(1)', 4], [#, '3R:21355692..21359768(-1)', 5]]]). +fb_tsv_pred_stats('less-frequent', gene_map_table, [6, [#, [#, '3R:19373757..19374789(-1)', 1], [#, '3L:11574764..11577044(-1)', 1], [#, '3L:11572797..11574663(-1)', 1], [#, 'X:20178755..20179729(-1)', 1], [#, '3L:10692530..10693167(-1)', 1], [#, '3R:25493481..25495161(-1)', 1], [#, 'X:20186630..20187604(-1)', 1]]]). +fb_tsv_pred_stats('num-columns', gene_rpkm_matrix, [170]). +fb_tsv_pred_stats('duplicated-rows', gene_rpkm_matrix, [0]). +fb_tsv_pred_stats('total-rows', gene_rpkm_matrix, [17747]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [1, 17747, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [2, 17747, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [3, 11214, object]). +fb_tsv_pred_stats('num-columns', gene_rpkm_report, [12]). +fb_tsv_pred_stats('duplicated-rows', gene_rpkm_report, [0]). +fb_tsv_pred_stats('total-rows', gene_rpkm_report, [2928711]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [1, 1, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [2, 17748, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [3, 17748, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [4, 7, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [5, 7, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [6, 166, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [7, 166, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [8, 5113, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [9, 8, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [10, 6776, object]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [11, 5412, int64]). +fb_tsv_pred_stats('unique-values', gene_rpkm_report, [12, 2, object]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [9, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_rpkm_report, [10, '', 60536]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [10, 60536, [#, ''], [#, 60536]]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_rpkm_report, [12, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0053410', 166], [#, 'FBgn0053411', 166], [#, 'FBgn0053412', 166], [#, 'FBgn0053413', 166], [#, 'FBgn0053414', 166], [#, 'FBgn0053408', 166], [#, 'FBgn0038694', 166]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0267595', 40], [#, 'FBgn0013691', 42], [#, 'FBgn0013673', 42], [#, 'FBgn0013701', 42], [#, 'FBgn0013700', 42], [#, 'FBgn0013674', 42], [#, 'FBgn0013675', 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [3, [#, [#, '5SrRNA:CR33410', 166], [#, '5SrRNA:CR33411', 166], [#, '5SrRNA:CR33412', 166], [#, '5SrRNA:CR33413', 166], [#, '5SrRNA:CR33414', 166], [#, '5SrRNA:CR33408', 166], [#, 'CG5217', 166]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [3, [#, [#, 'CR45933', 40], [#, 'mt:tRNA:Asp-GTC', 42], [#, 'mt:ATPase8', 42], [#, 'mt:tRNA:Asn-GTT', 42], [#, 'mt:tRNA:Met-CAT', 42], [#, 'mt:CoI', 42], [#, 'mt:CoII', 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0000235', 17711], [#, 'FBlc0000234', 17711], [#, 'FBlc0000233', 17711], [#, 'FBlc0000229', 17711], [#, 'FBlc0000217', 17711], [#, 'FBlc0000251', 17711], [#, 'FBlc0000250', 17711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0003639', 17545], [#, 'FBlc0003637', 17545], [#, 'FBlc0003636', 17545], [#, 'FBlc0003635', 17545], [#, 'FBlc0003634', 17545], [#, 'FBlc0003633', 17545], [#, 'FBlc0003632', 17545]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [7, [#, [#, mE_mRNA_P8_fat, 17711], [#, mE_mRNA_WPP_saliv, 17711], [#, mE_mRNA_WPP_fat, 17711], [#, mE_mRNA_L3_Wand_imag_disc, 17711], [#, mE_mRNA_A_MateM_4d_testis, 17711], [#, mE_mRNA_A_4d_Paraquat_10mM, 17711], [#, mE_mRNA_A_4d_Paraquat_5mM, 17711]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [7, [#, [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum', 17545]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [8, [#, [#, 6, 67267], [#, 5, 76452], [#, 4, 89006], [#, 3, 106255], [#, 2, 139559], [#, 1, 256023], [#, 0, 1229976]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [8, [#, [#, 4755, 1], [#, 3974, 1], [#, 2566, 1], [#, 3991, 1], [#, 10214, 1], [#, 15694, 1], [#, 3308, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [9, [#, [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837], [#, 0, 1229976]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [9, [#, [#, 7, 12019], [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [10, [#, [#, 45.0, 5314], [#, 72, 7512], [#, 44.0, 8878], [#, 72.0, 11038], [#, 73, 11536], [#, 135.0, 17264]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [10, [#, [#, 2235, 15], [#, 939, 42], [#, 667, 42], [#, 155, 42], [#, 1536, 42], [#, 354, 42], [#, 290, 42]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [11, [#, [#, 595, 4980], [#, 74, 5098], [#, 45, 5872], [#, 44, 9390], [#, 135, 17014], [#, 73, 17014], [#, 72, 18668]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [11, [#, [#, 62, 42], [#, 63, 42], [#, 16924, 82], [#, 230, 82], [#, 3528, 82], [#, 193, 82], [#, 16779, 84]]]). +fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). +fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). +fb_tsv_pred_stats('num-columns', gene_snapshots, [5]). +fb_tsv_pred_stats('duplicated-rows', gene_snapshots, [0]). +fb_tsv_pred_stats('total-rows', gene_snapshots, [13985]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [1, 13985, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [2, 13985, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [3, 7833, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [4, 61, object]). +fb_tsv_pred_stats('unique-values', gene_snapshots, [5, 3652, object]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', gene_snapshots, [3, -, 6153]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [3, 6153, [#, -], [#, 6153]]). +fb_tsv_pred_stats('null-value-count', gene_snapshots, [4, -, 10334]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [4, 10334, [#, -], [#, 10334]]). +fb_tsv_pred_stats('missing-values', gene_snapshots, [5, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [3, [#, [#, 'Carbonic anhydrase 2', 1], [#, 'PRL-1 phosphatase', 1], [#, tricornered, 1], [#, kurz, 1], [#, 'beaten path IV', 1], [#, 'male sterile (2) 35Ci', 1]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [3, [#, [#, 'Receptor expression enhancing protein A', 1], [#, tricornered, 1], [#, 'PRL-1 phosphatase', 1], [#, 'Carbonic anhydrase 2', 1], [#, 'sugar transporter 3', 1], [#, spt4, 1], [#, 'Imitation SWI', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [4, [#, [#, 20190919.0, 144], [#, 20190926.0, 198], [#, 20190912.0, 206], [#, 20190321.0, 222], [#, 20190307.0, 862], [#, 20190314.0, 1067]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [4, [#, [#, 20220901.0, 1], [#, 20200924.0, 1], [#, 20200730.0, 1], [#, 20200709.0, 1], [#, 20190725.0, 1], [#, 20210204.0, 1], [#, 20160630.0, 1]]]). +fb_tsv_pred_stats('most-frequent', gene_snapshots, [5, [#, [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'dachshund (dac) encodes a transcriptional cofactor that physically interacts with several other retinal determination proteins, including those encoded by eya and so, and regulates eye, leg, gonad, and brain development.', 1], [#, 'Contributions welcome.', 10334]]]). +fb_tsv_pred_stats('less-frequent', gene_snapshots, [5, [#, [#, 'Down syndrome cell adhesion molecule 2 (Dscam2) encodes a transmembrane protein. Its alternative splicing produces two biochemically distinct homophilic binding proteins expressed in different cells. It can mediate both repulsion and adhesion between neurons and contributes to boundary formation, neurite targeting and synapse formation in the brain.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'expanded (ex) encodes a FERM-domain containing protein that localizes to apical cell-cell junctions, where it promotes Hippo signaling by physically interacting with multiple Hippo pathway components. Through its regulation of Hippo signaling, the product of ex functions as an inhibitor of growth.', 1]]]). +fb_tsv_pred_stats('num-columns', ncRNA_genes_, [2]). +fb_tsv_pred_stats('duplicated-rows', ncRNA_genes_, [145327]). +fb_tsv_pred_stats('total-rows', ncRNA_genes_, [212303]). +fb_tsv_pred_stats('unique-values', ncRNA_genes_, [1, 66975, object]). +fb_tsv_pred_stats('unique-values', ncRNA_genes_, [2, 3, object]). +fb_tsv_pred_stats('missing-values', ncRNA_genes_, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', ncRNA_genes_, [2, '', 21161]). +fb_tsv_pred_stats('missing-values', ncRNA_genes_, [2, 21161, [#, ''], [#, 21161]]). +fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [1, [#, [#, ' \\gca_accession\\: \\GCA_000001215.4\\, ', 4566], [#, ' \\exons\\: [', 4566], [#, ' ', 4566], [#, ' }', 5311], [#, ' ', 5534], [#, ' ', 6494], [#, ' ], ', 13710]]]). +fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\endPosition\\: 23114377', 1], [#, ' \\startPosition\\: 23113577, ', 1], [#, ' \\endPosition\\: 23114049', 1], [#, ' \\geneId\\: \\FLYBASE:FBgn0266009\\, ', 1], [#, ' \\symbol\\: \\lncRNA:CR44782\\, ', 1], [#, ' \\url\\: \\http://flybase.org/reports/FBgn0266009.html\\, ', 1]]]). +fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [2, [#, [#, '}RR42320\\', 1], [#, '}RR42263\\', 1]]]). +fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [2, [#, [#, '}RR42263\\', 1], [#, '}RR42320\\', 1]]]). +fb_tsv_pred_stats('num-columns', pathway_group_data, [7]). +fb_tsv_pred_stats('duplicated-rows', pathway_group_data, [0]). +fb_tsv_pred_stats('total-rows', pathway_group_data, [992]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [1, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [2, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [3, 71, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [4, 18, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [5, 18, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [6, 658, object]). +fb_tsv_pred_stats('unique-values', pathway_group_data, [7, 658, object]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [4, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [4, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [5, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [5, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [6, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [6, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('null-value-count', pathway_group_data, [7, '', 17]). +fb_tsv_pred_stats('missing-values', pathway_group_data, [7, 17, [#, ''], [#, 17]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [1, [#, [#, 'FBgg0001196', 38], [#, 'FBgg0001069', 42], [#, 'FBgg0000891', 42], [#, 'FBgg0000981', 43], [#, 'FBgg0000916', 44], [#, 'FBgg0000892', 45], [#, 'FBgg0000980', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [1, [#, [#, 'FBgg0000941', 1], [#, 'FBgg0001093', 1], [#, 'FBgg0000917', 1], [#, 'FBgg0000910', 1], [#, 'FBgg0000975', 1], [#, 'FBgg0000958', 1], [#, 'FBgg0000889', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [2, [#, [#, 'IMD-N', 38], [#, 'NTCH-P', 42], [#, 'WNT-TCFN', 42], [#, 'HH-SMOP', 43], [#, 'SWH-N', 44], [#, 'WNT-TCFP', 45], [#, 'HH-SMON', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [2, [#, [#, 'SEVL', 1], [#, 'ACT-SMAD2', 1], [#, 'SWH', 1], [#, 'INS', 1], [#, 'PVR-P', 1], [#, 'EGFR-RTK', 1], [#, 'WNT-TCF', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [3, [#, [#, 'Negative Regulators of Imd Signaling Pathway', 38], [#, 'Positive Regulators of Notch Signaling Pathway', 42], [#, 'Negative Regulators of Wnt-TCF Signaling Pathway', 42], [#, 'Positive Regulators of Hedgehog Signaling Pathway', 43], [#, 'Negative Regulators of Hippo Signaling Pathway', 44], [#, 'Positive Regulators of Wnt-TCF Signaling Pathway', 45], [#, 'Negative Regulators of Hedgehog Signaling Pathway', 56]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [3, [#, [#, 'Sevenless Signaling Pathway', 1], [#, 'Activin Signaling Pathway', 1], [#, 'Hippo Signaling Pathway', 1], [#, 'Insulin-like Receptor Signaling Pathway', 1], [#, 'Positive Regulators of Pvr Signaling Pathway', 1], [#, 'EGFR Signaling Pathway', 1], [#, 'Wnt-TCF Signaling Pathway', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [4, [#, [#, 'FBgg0000910', 77], [#, 'FBgg0001059', 79], [#, 'FBgg0000958', 83], [#, 'FBgg0000917', 87], [#, 'FBgg0001068', 89], [#, 'FBgg0000889', 100], [#, 'FBgg0000978', 108]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [4, [#, [#, 'FBgg0001792', 6], [#, 'FBgg0001093', 14], [#, 'FBgg0001560', 23], [#, 'FBgg0000941', 30], [#, 'FBgg0000934', 31], [#, 'FBgg0000967', 35]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [5, [#, [#, 'INS', 77], [#, 'TL-CAN', 79], [#, 'EGFR-RTK', 83], [#, 'SWH', 87], [#, 'NTCH', 89], [#, 'WNT-TCF', 100], [#, 'HH-SMO', 108]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [5, [#, [#, 'CGAS-STING', 6], [#, 'ACT-SMAD2', 14], [#, 'TNF', 23], [#, 'SEVL', 30], [#, 'TORS', 31], [#, 'FGFR', 35]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [6, [#, [#, 'FBgn0010269', 6], [#, 'FBgn0004177', 6], [#, 'FBgn0262432', 6], [#, 'FBgn0283468', 6], [#, 'FBgn0003256', 6], [#, 'FBgn0004638', 6]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [6, [#, [#, 'FBgn0262408', 1], [#, 'FBgn0027539', 1], [#, 'FBgn0001987', 1], [#, 'FBgn0005632', 1], [#, 'FBgn0043364', 1], [#, 'FBgn0000395', 1], [#, 'FBgn0261952', 1]]]). +fb_tsv_pred_stats('most-frequent', pathway_group_data, [7, [#, [#, 'Dsor1', 6], [#, mts, 6], [#, 'mir-8', 6], [#, slmb, 6], [#, rl, 6], [#, drk, 6]]]). +fb_tsv_pred_stats('less-frequent', pathway_group_data, [7, [#, [#, 'mir-5', 1], [#, lili, 1], [#, 'Gli', 1], [#, faf, 1], [#, cbt, 1], [#, 'cv-2', 1], [#, srw, 1]]]). +fb_tsv_pred_stats('num-columns', physical_interactions_mitab, [42]). +fb_tsv_pred_stats('duplicated-rows', physical_interactions_mitab, [0]). +fb_tsv_pred_stats('total-rows', physical_interactions_mitab, [51247]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [1, 4623, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [2, 5257, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [3, 4611, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [4, 5242, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [5, 4623, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [6, 5257, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [7, 111, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [8, 4823, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [9, 4941, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [10, 5, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [11, 4, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [12, 3, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [13, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [14, 51247, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [15, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [16, 1, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [17, 7, object]). 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object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [30, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [31, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [32, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [33, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [34, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [35, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [36, 3, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [37, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [38, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [39, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [40, 2, object]). +fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [41, 2, 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physical_interactions_mitab, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [12, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [13, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [14, 0, [], []]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [15, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [15, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [16, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [16, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [17, -, 50635]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [17, 50635, [#, -], [#, 50635]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [18, -, 50634]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [18, 50634, [#, -], [#, 50634]]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [19, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [20, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [21, 0, [], []]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [22, 0, [], []]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [23, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [23, 51247, [#, -], [#, 51247]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [24, -, 51247]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [24, 51247, [#, -], [#, 51247]]). 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1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [34, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [35, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [36, '', 1]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [36, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [37, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [38, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [39, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, -, 51246]). +fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [40, 51247, [#, '', -], [#, 1, 51246]]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, '', 1]). +fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, -, 51246]). 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'FBgn0037555', 168], [#, 'FBgn0263979', 175], [#, 'FBgn0262866', 178], [#, 'FBgn0262739', 185], [#, 'FBgn0266411', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [2, [#, [#, 'FBgn0036437', 1], [#, 'FBgn0066365', 1], [#, 'FBgn0040773', 1], [#, 'FBgn0019929', 1], [#, 'FBgn0033192', 1], [#, 'FBgn0000147', 1], [#, 'FBgn0052450', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [3, [#, [#, 'entrez gene/locuslink:318847', 188], [#, 'CG5942|entrez gene/locuslink:39744', 204], [#, 'CG7199|entrez gene/locuslink:40378', 209], [#, 'CG10388|entrez gene/locuslink:42034', 220], [#, 'CG10325|entrez gene/locuslink:42037', 237], [#, 'CG6384|entrez gene/locuslink:41848', 259], [#, 'CG8409|entrez gene/locuslink:34119', 275]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [3, [#, [#, 'CG6541|entrez gene/locuslink:34578', 1], [#, 'CG8611|entrez gene/locuslink:32725', 1], [#, 'CG11490|entrez gene/locuslink:33184', 1], [#, 'CG42341|entrez gene/locuslink:40305', 1], [#, 'CG32213|entrez gene/locuslink:317918', 1], [#, 'CG1976|entrez gene/locuslink:43758', 1], [#, 'CG2943|entrez gene/locuslink:40933', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [4, [#, [#, 'CG4494|entrez gene/locuslink:33981', 155], [#, 'CG4005|entrez gene/locuslink:37851', 159], [#, 'CG9638|entrez gene/locuslink:40966', 168], [#, 'CG4236|entrez gene/locuslink:41836', 175], [#, 'CG17596|entrez gene/locuslink:33139', 178], [#, 'CG6671|entrez gene/locuslink:36544', 185], [#, 'CG45051|entrez gene/locuslink:43580', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [4, [#, [#, 'CG5048|entrez gene/locuslink:39598', 1], [#, 'CG4705|entrez gene/locuslink:34540', 1], [#, 'CG11659|entrez gene/locuslink:42352', 1], [#, 'CR43012|entrez gene/locuslink:12798490', 1], [#, 'CG44086|entrez gene/locuslink:34032', 1], [#, 'entrez gene/locuslink:3772715', 1], [#, 'CG12090|entrez gene/locuslink:38176', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [5, [#, [#, 'His3(gene name)', 188], [#, 'brm(gene name)', 204], [#, 'Hr78(gene name)', 209], [#, 'Ubx(gene name)', 220], [#, 'abd-A(gene name)', 237], [#, 'Cp190(gene name)', 259], [#, 'flybase:\\Su(var)205\\(gene name)', 275]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [5, [#, [#, 'Mst33A(gene name)', 1], [#, 'sad(gene name)', 1], [#, 'NetA(gene name)', 1], [#, 'CG5131(gene name)', 1], [#, 'OSCP1(gene name)', 1], [#, 'CG9014(gene name)', 1], [#, 'SIFaR(gene name)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [6, [#, [#, 'Sumo(gene name)', 155], [#, 'yki(gene name)', 159], [#, 'Ada2b(gene name)', 168], [#, 'Caf1-55(gene name)', 175], [#, 'S6kII(gene name)', 178], [#, 'AGO1(gene name)', 185], [#, 'sima(gene name)', 188]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [6, [#, [#, 'Dnaaf6(gene name)', 1], [#, 'dyl(gene name)', 1], [#, 'COX7C(gene name)', 1], [#, 'Ser7(gene name)', 1], [#, 'Corin(gene name)', 1], [#, 'aurA(gene name)', 1], [#, 'CG32450(gene name)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0397\\(two hybrid array)', 2067], [#, 'psi-mi:\\MI:0027\\(cosedimentation)', 4090], [#, 'psi-mi:\\MI:0096\\(pull down)', 4202], [#, 'psi-mi:\\MI:0006\\(anti bait coimmunoprecipitation)', 5251], [#, 'psi-mi:\\MI:0018\\(two hybrid)', 5958], [#, 'psi-mi:\\MI:0046\\(experimental knowledge based)', 10942], [#, 'psi-mi:\\MI:0007\\(anti tag coimmunoprecipitation)', 12395]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0042\\(electron paramagnetic resonance)', 1], [#, 'psi-mi:\\MI:0928\\(filter trap assay)', 1], [#, 'psi-mi:\\MI:1183\\(nuclease footprinting)', 1], [#, 'psi-mi:\\MI:1238\\(mass spectrometry studies of subunit exchange)', 1], [#, 'psi-mi:\\MI:0370\\(tox-r dimerization assay)', 1], [#, 'psi-mi:\\MI:0048\\(filamentous phage display)', 1], [#, 'psi-mi:\\MI:0605\\(enzymatic footprinting)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [8, [#, [#, 'Friedman A.A. (2011)', 400], [#, 'Rhee D.Y. (2014)', 618], [#, 'Vinayagam A. (2016)', 1808], [#, 'Shokri L. (2019)', 2109], [#, 'Hu Y. (2017.6.13)', 3634], [#, 'Anger A.M. (2013)', 3828], [#, 'Guruharsha K.G. (2011)', 10947]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [8, [#, [#, 'Geng J. (2023)', 1], [#, 'Mellone B.G. (2011)', 1], [#, 'Lim Y.M. (2013)', 1], [#, 'Tran T.A. (2013)', 1], [#, 'Ooe N. (2007)', 1], [#, 'Jiang L. (2007)', 1], [#, 'Nagai H. (2021)', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0224702|pubmed:22028469', 386], [#, 'FBrf0227292|pubmed:25242320', 618], [#, 'FBrf0233454|pubmed:27626673', 1808], [#, 'FBrf0241977|pubmed:30995488', 2109], [#, 'FBrf0235788', 3634], [#, 'FBrf0221476|pubmed:23636399', 3828], [#, 'FBrf0218395|pubmed:22036573', 10947]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0057159|pubmed:1372522', 1], [#, 'FBrf0208241|pubmed:19348939', 1], [#, 'FBrf0204148|pubmed:17900877', 1], [#, 'FBrf0192396|pubmed:17224403', 1], [#, 'FBrf0192282|pubmed:17166919', 1], [#, 'FBrf0130030|pubmed:10801879', 1], [#, 'FBrf0134475|pubmed:11267682', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [15, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [15, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [16, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [16, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0919\\(acceptor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291], [#, 'psi-mi:\\MI:0498\\(prey)', 15993], [#, 'psi-mi:\\MI:0496\\(bait)', 16786]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 11], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290], [#, 'psi-mi:\\MI:0498\\(prey)', 15747], [#, 'psi-mi:\\MI:0496\\(bait)', 17033]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 15], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [23, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [23, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [24, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [24, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000071265', 36], [#, 'FBig0000095560', 38], [#, 'FBig0000097702', 38], [#, 'FBig0000095735', 38], [#, 'FBig0000086228', 40], [#, 'FBig0000067005', 44], [#, 'FBig0000017021', 46]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000000059', 1], [#, 'FBig0000108279', 1], [#, 'FBig0000108278', 1], [#, 'FBig0000108277', 1], [#, 'FBig0000108275', 1], [#, 'FBig0000108274', 1], [#, 'FBig0000108273', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\HA tag\\', 1318], [#, 'comment:\\GFP tag\\', 1380], [#, 'comment:\\GST tag\\', 1618], [#, 'comment:\\FLAG tag\\', 1993], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3270], [#, 'comment:\\fused to GAL4 activation domain\\', 3379]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\45 unique peptides identified\\', 1], [#, 'comment:\\mRFP tag\\', 1], [#, 'comment:\\MBP tag, [3]H label\\', 1], [#, 'comment:\\AU5 tag\\', 1], [#, 'comment:\\fused to biotin\\', 1], [#, 'comment:\\isoform RA/D specific\\|comment:\\biotin label\\', 1], [#, 'comment:\\FLAG\\|comment:\\myc\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\TAP tag\\', 1285], [#, 'comment:\\HA tag\\', 1378], [#, 'comment:\\GST tag\\', 1497], [#, 'comment:\\FLAG tag\\', 2115], [#, 'comment:\\fused to GAL4 activation domain\\', 3309], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3313]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\XL isoform specific\\', 1], [#, 'comment:\\His,SUMO tag\\', 1], [#, 'comment:\\SAINT score = 0.9673\\', 1], [#, 'comment:\\fused to &bgr;-gal\\', 1], [#, 'comment:\\Myc tag\\|comment:\\RFP tag\\', 1], [#, 'comment:\\38, 33 peptide counts\\', 1], [#, 'comment:\\99 peptide counts\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.\\', 984], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.\\', 1083], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.\\', 1723], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pooled)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pairwise.)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 2713], [#, 'comment:\\Source was embryos of wild-type fly line; proteins produced from endogenous genes.\\|comment:\\The structure of the Drosophila 80S ribosome with accessory proteins solved by cryo-EM. Complex captured as 3828 pairwise interactions which do not necessarily reflect direct contact.\\', 3403]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\HGScore = 131.41663\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.\\|comment:\\@BicD@ binds to GTP-bound @Rab6@, not GDP-bound @Rab6@.\\|comment:\\Purified recombinant proteins were tested for interaction.\\|comment:\\There is overlap of @egl@ and @Rab6@ binding sites in @BicD@.\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from S2 cell extract (endogenous gene).\\|comment:\\Constitutively active (GTP-locked) form of Rab was used for pull down. Parallel pull downs performed for several Rabs proteins in this study. Yield was measured using spectral counts. A specificity score (S score) was calculated, where greater weight was given to interactions seen with fewer baits.\\|comment:\\Specificity S-score=11.86.\\', 1], [#, 'comment:\\HGScore = 81.66328\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in HEK293F cells; prey produced as a recombinant fusion protein in S2 cells.\\|comment:\\Kd = 4.66uM\\', 1], [#, 'comment:\\Source was intact S2 cells; proteins produced from transfected constructs.\\|comment:\\Unlabeled S2 cells expressing @Nrg@ were mixed with dye labeled S2 cells expressing @ed@, and the formation of cell clusters containing both @Nrg@ and @ed@ expressing cells was assayed by immunofluorescence.\\', 1], [#, 'comment:\\HGScore = 61.53800\\', 1]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [29, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [29, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [30, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [30, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [31, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [31, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [32, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [32, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [33, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [33, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [34, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [34, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [35, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [35, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [37, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [37, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [38, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [38, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [39, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [39, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [40, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [40, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [41, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [41, []]). +fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [42, []]). +fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [42, []]). +fb_tsv_pred_stats('num-columns', 'scRNA-Seq_gene_expression', [15]). +fb_tsv_pred_stats('duplicated-rows', 'scRNA-Seq_gene_expression', [0]). +fb_tsv_pred_stats('total-rows', 'scRNA-Seq_gene_expression', [14319160]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [1, 13, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [2, 13, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [3, 89, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [4, 89, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [5, 4, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [6, 2, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [7, 29, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [8, 1690, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [9, 1690, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [10, 271, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [11, 271, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [12, 14295, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [13, 14295, object]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [14, 8174166, float64]). +fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [15, 370225, float64]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'scRNA-Seq_gene_expression', [5, '', 5898802]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [5, 5898802, [#, ''], [#, 5898802]]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [12, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [13, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [14, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [15, 0, [], []]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0244302', 177088], [#, 'FBrf0245499', 181659], [#, 'FBrf0246655', 191489], [#, 'FBrf0247762', 424264], [#, 'FBrf0251482', 602328], [#, 'FBrf0249767', 664303], [#, 'FBrf0252876', 11562417]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0248210', 24480], [#, 'FBrf0245988', 38144], [#, 'FBrf0245616', 100103], [#, 'FBrf0248439', 114659], [#, 'FBrf0247435', 116094], [#, 'FBrf0247148', 122132], [#, 'FBrf0244302', 177088]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088], [#, 'Allen et al., 2020, eLife 9: e54074', 181659], [#, 'Cho et al., 2020, Nat. Commun. 11(1): 4483', 191489], [#, '\\00d6zel et al., 2021, Nature 589(7840): 88--95', 424264], [#, 'Baker et al., 2021, Genome Res. 31(10): 1927--1937', 602328], [#, 'Mokashi et al., 2021, Front. Psychiatry 12: 699033', 664303], [#, 'Li et al., 2022, Science 375(6584): eabk2432', 11562417]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Shi et al., 2021, Curr. Biol. 31(4): 840--852.e5', 24480], [#, 'Cattenoz et al., 2020, EMBO J. 39(12): e104486', 38144], [#, 'Jevitt et al., 2020, PLoS Biol. 18(4): e3000538', 100103], [#, 'Tauc et al., 2021, eLife 10: e62250', 114659], [#, 'Zappia et al., 2020, EMBO Rep. 21(10): e49555', 116094], [#, 'Rust et al., 2020, Nat. Commun. 11(1): 5628', 122132], [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0005662', 424264], [#, 'FBlc0004310', 462839], [#, 'FBlc0003849', 485904], [#, 'FBlc0004788', 587089], [#, 'FBlc0004142', 1324076], [#, 'FBlc0004624', 1374828], [#, 'FBlc0005151', 1787268]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0004140', 11271], [#, 'FBlc0004136', 11650], [#, 'FBlc0004622', 12336], [#, 'FBlc0004618', 12504], [#, 'FBlc0005149', 13127], [#, 'FBlc0005145', 13237], [#, 'FBlc0003731', 16857]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2021_Ozel_ADM1_seq_clustering, 424264], [#, scRNAseq_2022_FCA_MALE_HEAD_seq_clustering, 462839], [#, scRNAseq_2022_FCA_FEMALE_HEAD_seq_clustering, 485904], [#, scRNAseq_2022_FCA_MIXED_HEAD_seq_clustering, 587089], [#, scRNAseq_2022_FCA_FEMALE_FULL_seq_clustering, 1324076], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering, 1374828], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering, 1787268]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2022_FCA_FEMALE_IPC_seq_clustering, 11271], [#, scRNAseq_2022_FCA_FEMALE_CC_seq_clustering, 11650], [#, scRNAseq_2022_FCA_MALE_IPC_seq_clustering, 12336], [#, scRNAseq_2022_FCA_MALE_CC_seq_clustering, 12504], [#, scRNAseq_2022_FCA_MIXED_IPC_seq_clustering, 13127], [#, scRNAseq_2022_FCA_MIXED_CC_seq_clustering, 13237], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering, 16857]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, antenna, 537963], [#, ovary, 556379], [#, 'adult brain', 602328], [#, brain, 664303], [#, adult, 1157530], [#, 'adult head', 1535832], [#, mixed, 4486172]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, 'adult pars intercerebralis', 36734], [#, 'adult corpus cardiacum', 37391], [#, 'embryonic/larval hemolymph', 101153], [#, 'adult midgut', 114659], [#, 'wing disc', 116094], [#, 'adult abdomen', 120557], [#, 'primary lobe of embryonic/larval lymph gland', 128480]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0004677', 13868], [#, 'FBlc0005192', 13876], [#, 'FBlc0004567', 13941], [#, 'FBlc0005094', 13941], [#, 'FBlc0004713', 13953], [#, 'FBlc0005247', 13956], [#, 'FBlc0005205', 13958]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0003842', 762], [#, 'FBlc0003779', 765], [#, 'FBlc0003749', 872], [#, 'FBlc0003748', 1065], [#, 'FBlc0003833', 1100], [#, 'FBlc0003843', 2232], [#, 'FBlc0003733', 2255]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_fat_cells, 13868], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_neurons, 13876], [#, scRNAseq_2022_FCA_MALE_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MIXED_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_spermatocytes, 13953], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_spermatocytes, 13956], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_fat_cells, 13958]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_imaginal_tracheoblasts, 762], [#, scRNAseq_2020_Cho_NI96HL_seq_clustering_lamellocytes, 765], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_lamellocytes, 872], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_adipohemocytes, 1065], [#, scRNAseq_2020_Zappia_mCherryRNAi_seq_clustering_imaginal_tracheoblasts, 1100], [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_SOP_cells, 2232], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering_lamellocytes, 2255]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003185', 202803], [#, 'FBbt00005040', 281977], [#, 'FBbt00047095', 365976], [#, 'FBbt00058143', 371275], [#, 'FBbt00058238', 373508], [#, 'FBbt00049949', 395912], [#, 'FBbt00058230', 396390]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003844', 3363], [#, 'FBbt00004868', 4017], [#, 'FBbt00003874', 4103], [#, 'FBbt00111746', 4323], [#, 'FBbt00004873', 4476], [#, 'FBbt00004905', 4559], [#, 'FBbt00003876', 4893]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'adult oenocyte', 202803], [#, 'adult tracheocyte', 281977], [#, 'adult neuron', 365976], [#, 'adult hemocyte', 371275], [#, 'adult epithelial cell', 373508], [#, 'adult fat cell', 395912], [#, 'adult muscle cell', 396390]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'medullary tangential neuron Mt8', 3363], [#, 'germarium cap cell', 4017], [#, 'lobula columnar neuron LC4', 4103], [#, 'lobula columnar neuron LC10c', 4323], [#, 'female germline stem cell', 4476], [#, 'border follicle cell', 4559], [#, 'lobula columnar neuron LC6', 4893]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0267521', 1690], [#, 'FBgn0086472', 1690], [#, 'FBgn0002626', 1690], [#, 'FBgn0285947', 1690], [#, 'FBgn0003279', 1690], [#, 'FBgn0017579', 1690], [#, 'FBgn0016726', 1690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0284232', 2], [#, 'FBgn0267889', 4], [#, 'FBgn0045478', 4], [#, 'FBgn0039374', 4], [#, 'FBgn0028537', 4], [#, 'FBgn0267886', 4], [#, 'FBgn0085252', 4]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, '18SrRNA-Psi:CR45861', 1690], [#, 'RpS25', 1690], [#, 'RpL32', 1690], [#, 'RpS10b', 1690], [#, 'RpL4', 1690], [#, 'RpL14', 1690], [#, 'RpL29', 1690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, 'CG46316', 2], [#, 'CR46177', 4], [#, 'Gr64b', 4], [#, 'CG17770', 4], [#, 'CG31775', 4], [#, 'CR46174', 4], [#, 'CG34223', 4]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 1272.2646, 2315], [#, 1218.0267, 2325], [#, 1287.0013, 2439], [#, 1298.7013, 2444], [#, 1095.2902, 2445], [#, 24.43136, 2546], [#, 1191.8951, 2690]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 269.05170000000004, 1], [#, 480.440107, 1], [#, 990.35309, 1], [#, 370.235704, 1], [#, 272.274411, 1], [#, 234.056368, 1], [#, 320.438443, 1]]]). +fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.076923, 41235], [#, 0.0625, 43249], [#, 0.1, 44120], [#, 0.025, 44512], [#, 0.04, 47158], [#, 0.083333, 47452], [#, 0.05, 59787]]]). +fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.366282, 1], [#, 0.774026, 1], [#, 0.318802, 1], [#, 0.173431, 1], [#, 0.334605, 1], [#, 0.770109, 1], [#, 0.517905, 1]]]). +fb_tsv_pred_stats('num-columns', sed5C, [11]). +fb_tsv_pred_stats('duplicated-rows', sed5C, [0]). +fb_tsv_pred_stats('total-rows', sed5C, [120]). +fb_tsv_pred_stats('unique-values', sed5C, [1, 10, object]). +fb_tsv_pred_stats('unique-values', sed5C, [2, 10, object]). +fb_tsv_pred_stats('unique-values', sed5C, [3, 5, object]). +fb_tsv_pred_stats('unique-values', sed5C, [4, 6, object]). +fb_tsv_pred_stats('unique-values', sed5C, [5, 3, object]). +fb_tsv_pred_stats('unique-values', sed5C, [6, 2, object]). +fb_tsv_pred_stats('unique-values', sed5C, [7, 119, object]). +fb_tsv_pred_stats('unique-values', sed5C, [8, 119, object]). +fb_tsv_pred_stats('unique-values', sed5C, [9, 79, object]). +fb_tsv_pred_stats('unique-values', sed5C, [10, 2, object]). +fb_tsv_pred_stats('unique-values', sed5C, [11, 2, object]). +fb_tsv_pred_stats('missing-values', sed5C, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [4, 0, [], []]). +fb_tsv_pred_stats('null-value-count', sed5C, [5, '', 114]). +fb_tsv_pred_stats('missing-values', sed5C, [5, 114, [#, ''], [#, 114]]). +fb_tsv_pred_stats('null-value-count', sed5C, [6, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [6, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('missing-values', sed5C, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', sed5C, [8, 0, [], []]). +fb_tsv_pred_stats('null-value-count', sed5C, [9, '', 41]). +fb_tsv_pred_stats('missing-values', sed5C, [9, 41, [#, ''], [#, 41]]). +fb_tsv_pred_stats('null-value-count', sed5C, [10, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [10, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('null-value-count', sed5C, [11, '', 118]). +fb_tsv_pred_stats('missing-values', sed5C, [11, 118, [#, ''], [#, 118]]). +fb_tsv_pred_stats('most-frequent', sed5C, [1, [#, [#, 'FBgg0000062', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6], [#, 'FBgg0000100', 7], [#, 'FBgg0000118', 14], [#, 'FBgg0000128', 75]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [1, [#, [#, 'FBgg0000117', 1], [#, 'FBgg0000104', 2], [#, 'FBgg0000062', 3], [#, 'FBgg0000114', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [2, [#, [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6], [#, 'CASPASES', 7], [#, 'HECT UBIQUITIN LIGASES', 14], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 75]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [2, [#, [#, 'JOSEPHIN DEUBIQUITINASES', 1], [#, 'GOLIATH UBIQUITIN LIGASES', 2], [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'N-ETHYLMALEIMIDE-SENSITIVE FACTORS', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [4, [#, [#, ubiquit, 1], [#, 'cysteine-type deubiquitinase activity', 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [4, [#, [#, 'cysteine-type deubiquitinase activity', 1], [#, ubiquit, 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [7, [#, [#, 'FBgn0034546', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035233', 1], [#, 'FBgn0032635', 1], [#, 'FBgn0025186', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0034546', 1], [#, 'FBgn0034314', 1], [#, 'FBgn0034312', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [8, [#, [#, 'CG13442', 1], [#, 'Sou', 1], [#, 'CG11414', 1], [#, 'CG12099', 1], [#, 'Pex10', 1], [#, 'CG15141', 1], [#, 'ari-2', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [8, [#, [#, 'ari-2', 1], [#, 'CG12099', 1], [#, 'CG11414', 1], [#, 'Sou', 1], [#, 'CG13442', 1], [#, nopo, 1], [#, 'CG10916', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [9, [#, [#, 'Ubr1 ubiquitin ligase', 1], [#, 'Peroxin 12', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Non-SMC element 1', 1], [#, 'Protein interacting with Ttk69 and Sin3A', 1], [#, 'ariadne 2', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [9, [#, [#, 'ariadne 2', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Peroxin 12', 1], [#, 'Ubr1 ubiquitin ligase', 1], [#, 'suppression of retinal degeneration disease 1 upon overexpression 1', 1], [#, highwire, 1], [#, 'Mahogunin ring finger 1', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). +fb_tsv_pred_stats('most-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('less-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). +fb_tsv_pred_stats('num-columns', sednJ, [2]). +fb_tsv_pred_stats('duplicated-rows', sednJ, [0]). +fb_tsv_pred_stats('total-rows', sednJ, [76447]). +fb_tsv_pred_stats('unique-values', sednJ, [1, 76447, object]). +fb_tsv_pred_stats('unique-values', sednJ, [2, 76447, object]). +fb_tsv_pred_stats('missing-values', sednJ, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', sednJ, [2, 0, [], []]). +fb_tsv_pred_stats('num-columns', gene_associatio, [2]). +fb_tsv_pred_stats('duplicated-rows', gene_associatio, [69]). +fb_tsv_pred_stats('total-rows', gene_associatio, [48039]). +fb_tsv_pred_stats('unique-values', gene_associatio, [1, 47970, object]). +fb_tsv_pred_stats('unique-values', gene_associatio, [2, 4664, object]). +fb_tsv_pred_stats('missing-values', gene_associatio, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', gene_associatio, [2, 0, [], []]). +fb_tsv_pred_stats('most-frequent', gene_associatio, [1, [#, [#, 'FB\\FBgn0053817\\His2A:CG33817\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053817\\His2A:CG33817\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\enables\\GO:0003677\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\F\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053846\\His1:CG33846\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33846\\CG33846\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053843\\His1:CG33843\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33843\\CG33843\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2]]]). +fb_tsv_pred_stats('less-frequent', gene_associatio, [1, [#, [#, '!generated-by:', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:1904355\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0070198\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\enables\\GO:0003950\\FB:FBrf0241717|PMID:30593492\\IMP\\\\F\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0090263\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0032436\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0046330\\FB:FBrf0254888|PMID:36222503\\IDA\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20230307\\FlyBase\\\\', 1]]]). +fb_tsv_pred_stats('most-frequent', gene_associatio, [2, [#, [#, 'sex|dsxF|dsxM|intersex-62c|ix-62c\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 19], [#, 'lipase\\protein\\taxon:7227\\20230703\\InterPro\\\\', 19], [#, 'factor|A7.1|ABF|Abf|CG3992|DmGATAb|GATA|GATAb|SERPENT|SRP|Serpent|Srp|abf|dGATAb|l(3)01549|l(3)89B2|l(3)neo45|serpentD|spt|srpD\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 21], [#, 'protein\\protein\\taxon:7227\\20151015\\FlyBase\\\\', 21], [#, 'sterile(2)ltoRJ36|fs(2)ltoRJ36|no-relish\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 23], [#, '1|Rhomboid-1|Rhomboid-I|Ve|Veinlet|iks|rho-1|rho1|rhom|rhomboid-1|rhomboid/veinlet|rhomboid1|ve|veinlet\\protein\\taxon:7227\\20200406\\FlyBase\\\\', 26], [#, '1.12|co|dNotch|fa|facet|l(1)3Cb|l(1)Ax|l(1)N|n[fah]|nd|notch|notchoid|shd|spl|split|strawberry|swb\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 44]]]). +fb_tsv_pred_stats('less-frequent', gene_associatio, [2, [#, [#, 'FlyBase', 1], [#, 'B2-3|Sox21|SoxB2.3|sox21a\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200725\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200311\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20190311\\FlyBase\\\\', 1]]]). +fb_tsv_pred_stats('num-columns', disease_model_annotations, [12]). +fb_tsv_pred_stats('duplicated-rows', disease_model_annotations, [0]). +fb_tsv_pred_stats('total-rows', disease_model_annotations, [26750]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [1, 5165, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [2, 5165, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [3, 317, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [4, 6, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [5, 3554, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [6, 3554, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [7, 8303, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [8, 8303, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [9, 2657, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [10, 2657, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [11, 6770, object]). +fb_tsv_pred_stats('unique-values', disease_model_annotations, [12, 2675, object]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [3, '', 21466]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [3, 21466, [#, ''], [#, 21466]]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [6, 0, [], []]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [7, '', 6240]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [7, 6240, [#, ''], [#, 6240]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [8, '', 6240]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [8, 6240, [#, ''], [#, 6240]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [9, '', 20510]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [9, 20510, [#, ''], [#, 20510]]). +fb_tsv_pred_stats('null-value-count', disease_model_annotations, [10, '', 20510]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [10, 20510, [#, ''], [#, 20510]]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [11, 0, [], []]). +fb_tsv_pred_stats('missing-values', disease_model_annotations, [12, 0, [], []]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0026420', 300], [#, 'FBgn0029891', 301], [#, 'FBgn0261084', 371], [#, 'FBgn0024961', 448], [#, 'FBgn0025823', 630], [#, 'FBgn0025587', 680], [#, 'FBgn0015394', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0033093', 1], [#, 'FBgn0031951', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0031973', 1], [#, 'FBgn0266724', 1], [#, 'FBgn0050273', 1], [#, 'FBgn0031981', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [2, [#, [#, 'Hsap\\SNCA', 300], [#, 'Pink1', 301], [#, 'Hsap\\TARDBP', 371], [#, 'Hsap\\ATXN3', 448], [#, 'Hsap\\APP', 630], [#, 'Hsap\\HTT', 680], [#, 'Hsap\\MAPT', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [2, [#, [#, 'CG3270', 1], [#, r2d2, 1], [#, 'Sirup', 1], [#, 'Spn28Dc', 1], [#, 'Trs20', 1], [#, 'CG30273', 1], [#, 'Megf8', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:11138', 300], [#, 'HGNC:11571', 371], [#, 'HGNC:7106', 448], [#, 'HGNC:620', 630], [#, 'HGNC:4851', 680], [#, 'HGNC:6893', 948]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:6239', 1], [#, 'HGNC:16854', 1], [#, 'HGNC:11118', 1], [#, 'HGNC:12013', 1], [#, 'HGNC:18222', 1], [#, 'HGNC:14973', 1], [#, 'HGNC:19245', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [5, [#, [#, 'DOID:10652', 652], [#, 'DOID:0060213', 692], [#, 'DOID:14330', 992], [#, 'DOID:1289', 1045], [#, 'DOID:12858', 1091], [#, 'DOID:162', 1305], [#, 'DOID:680', 1474]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [5, [#, [#, 'DOID:0111040', 1], [#, 'DOID:0080232', 1], [#, 'DOID:0110441', 1], [#, 'DOID:0111706', 1], [#, 'DOID:0080698', 1], [#, 'DOID:0080465', 1], [#, 'DOID:0060730', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [6, [#, [#, 'Alzheimer\'s disease', 652], [#, 'frontotemporal dementia and/or amyotrophic lateral sclerosis-1', 692], [#, 'Parkinson\'s disease', 992], [#, 'neurodegenerative disease', 1045], [#, 'Huntington\'s disease', 1091], [#, cancer, 1305], [#, tauopathy, 1474]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [6, [#, [#, 'glycogen storage disease IXd', 1], [#, 'autosomal dominant intellectual developmental disorder 51', 1], [#, 'dilated cardiomyopathy 2B', 1], [#, 'oblique facial clefting 1', 1], [#, 'Teebi hypertelorism syndrome 1', 1], [#, 'developmental and epileptic encephalopathy 30', 1], [#, 'torsion dystonia 1', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [7, [#, [#, 'FBal0060587', 153], [#, 'FBal0127292', 173], [#, 'FBal0193144', 193], [#, 'FBal0126526', 233], [#, 'FBal0126527', 239], [#, 'FBal0090630', 296]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [7, [#, [#, 'FBal0341584', 1], [#, 'FBal0265787', 1], [#, 'FBal0324663', 1], [#, 'FBal0262510', 1], [#, 'FBal0257944', 1], [#, 'FBal0235732', 1], [#, 'FBal0206026', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [8, [#, [#, 'Ras85D[V12.UAS]', 153], [#, 'Hsap\\HTT[Q93.ex1.UAS]', 173], [#, 'Pink1[B9]', 193], [#, 'Hsap\\MAPT[UAS.cWa]', 233], [#, 'Hsap\\MAPT[R406W.UAS]', 239], [#, 'Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]', 296]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [8, [#, [#, 'Tom7[HMC06597]', 1], [#, 'Lkb1[UAS.cWa]', 1], [#, 'Lkb1[VSH330167]', 1], [#, 'Lkb1[GL00019]', 1], [#, 'Lkb1[HMS01351]', 1], [#, 'Lkb1[KK108675]', 1], [#, 'Droj2[GD14050]', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:6677', 34], [#, 'HGNC:2638', 35], [#, 'HGNC:9475', 36], [#, 'HGNC:59', 44], [#, 'HGNC:10024', 45], [#, 'HGNC:12530', 48]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:26013', 1], [#, 'HGNC:7703', 1], [#, 'HGNC:24846', 1], [#, 'HGNC:5201', 1], [#, 'HGNC:8966', 1], [#, 'HGNC:12756', 1], [#, 'HGNC:12974', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [10, [#, [#, 'LPL', 34], [#, 'CYP3A5', 35], [#, 'PRSS1', 36], [#, 'ABCC8', 44], [#, 'RLBP1', 45], [#, 'UGT1A1', 48]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [10, [#, [#, 'DNAAF5', 1], [#, 'NDUFB8', 1], [#, 'GAS2L2', 1], [#, 'HS6ST1', 1], [#, 'PIGL', 1], [#, 'WDR4', 1], [#, 'RNF113A', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [11, [#, [#, 'modeled by FLYBASE:Hsap\\HTT[128Q.1-336.UAS]; FB:FBal0294194', 129], [#, 'modeled by FLYBASE:Hsap\\MAPT[UAS.cWa]; FB:FBal0126526', 181], [#, 'modeled by FLYBASE:Hsap\\MAPT[R406W.UAS]; FB:FBal0126527', 189], [#, 'modeled by FLYBASE:Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]; FB:FBal0090630', 241], [#, 'CEC', 361], [#, 'CEA', 4981], [#, 'IEA', 6240]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [11, [#, [#, 'is exacerbated by FLYBASE:Pka-C1[GD1276]; FB:FBal0208081', 1], [#, 'is ameliorated by FLYBASE:wg[l-12]; FB:FBal0018504', 1], [#, 'is ameliorated by FLYBASE:nej[Q7]; FB:FBal0094386', 1], [#, 'is ameliorated by FLYBASE:mam[8]; FB:FBal0012016', 1], [#, 'is ameliorated by FLYBASE:gro[1]; FB:FBal0005217', 1], [#, 'is ameliorated by FLYBASE:fz[EY13696]; FB:FBal0159195', 1], [#, 'is ameliorated by FLYBASE:fng[52]; FB:FBal0034614', 1]]]). +fb_tsv_pred_stats('most-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0228684', 158], [#, 'FBrf0241270', 174], [#, 'FBrf0248245', 176], [#, 'FBrf0244983', 239], [#, 'FBrf0227999', 245], [#, 'FBrf0218446', 303], [#, 'FBrf0241599', 6240]]]). +fb_tsv_pred_stats('less-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0217529', 1], [#, 'FBrf0230073', 1], [#, 'FBrf0205420', 1], [#, 'FBrf0190823', 1], [#, 'FBrf0221444', 1], [#, 'FBrf0211611', 1], [#, 'FBrf0194165', 1]]]). +fb_tsv_pred_stats('num-columns', fu_gal4_table_, [2]). +fb_tsv_pred_stats('duplicated-rows', fu_gal4_table_, [25810]). +fb_tsv_pred_stats('total-rows', fu_gal4_table_, [43801]). +fb_tsv_pred_stats('unique-values', fu_gal4_table_, [1, 17987, object]). +fb_tsv_pred_stats('unique-values', fu_gal4_table_, [2, 343, object]). +fb_tsv_pred_stats('missing-values', fu_gal4_table_, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fu_gal4_table_, [2, '', 2614]). +fb_tsv_pred_stats('missing-values', fu_gal4_table_, [2, 2614, [#, ''], [#, 2614]]). +fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [1, [#, [#, ' \\driver\\: ', 319], [#, ' ', 319], [#, ' }', 319], [#, ' \\major_stages\\: ', 319], [#, ' \\transposons\\: ', 319], [#, ' \\major_tissues\\: ', 319], [#, ' },', 1580]]]). +fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\FBst0067166\\: \\67166\\,', 1], [#, ' \\FBst0067167\\: \\67167\\,', 1], [#, ' \\FBst0067168\\: \\67168\\,', 1], [#, ' \\FBst0067175\\: \\67175\\,', 1], [#, ' \\FBst0067177\\: \\67177\\,', 1], [#, ' \\FBst0067178\\: \\67178\\,', 1]]]). +fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}fruNP0021\\', 1], [#, 'Or47b-GAL4.7.467}\\', 1], [#, 'ato-GAL4.3.6}\\', 1], [#, 'GAL4}pnt14-94\\', 1], [#, 'en2.4-GAL4}\\', 3], [#, '},', 154]]]). +fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}C587\\', 1], [#, 'GawB}fruNP0021\\', 1], [#, 'GMR9D11-GAL4}\\', 1], [#, 'alrm-GAL4.D}\\', 1], [#, 'GAL4-lacZ-Ubx(-FRT).dC}@; see @Scer\\\\GAL4[Ubx.PdC]@ elsewhere in this table.\\,', 1], [#, 'GAL4-lacZ-Ubx(FRT.f+).dC}\\', 1], [#, 'GAL4-\\03b1Tub84B(-FRT).P}@; see @Scer\\\\GAL4[\\03b1Tub84B.PP]@ elsewhere in this table.\\', 1]]]). +fb_tsv_pred_stats('num-columns', insertion_mapping, [7]). +fb_tsv_pred_stats('duplicated-rows', insertion_mapping, [92]). +fb_tsv_pred_stats('total-rows', insertion_mapping, [212010]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [1, 211918, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [2, 211884, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [3, 64780, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [4, 3, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [5, 4, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [6, 7609, object]). +fb_tsv_pred_stats('unique-values', insertion_mapping, [7, 3716, object]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [2, '', 127]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [2, 127, [#, ''], [#, 127]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [3, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [3, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [4, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [4, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [5, '', 139921]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [5, 139921, [#, ''], [#, 139921]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [6, '', 129488]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [6, 129488, [#, ''], [#, 129488]]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, '', 203698]). +fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, ?, 70]). +fb_tsv_pred_stats('missing-values', insertion_mapping, [7, 203768, [#, '', ?], [#, 203698, 70]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [1, [#, [#, 'P{Roc1b.+t1.17}', 4], [#, 'P{Mcp-wy', 4], [#, 'P{Fab7-w', 6], [#, 'P{SUPor-P.PRE', 9], [#, 'P{ush-lacZ.-2190.-1421}', 9], [#, 'P{Mcp-ff', 13], [#, 'P{Mcp-w', 44]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [1, [#, [#, 'P{UASp-GAP43.mEos}1', 1], [#, 'P{KK106851}VIE-260B', 1], [#, 'P{KK106853}VIE-260B', 1], [#, 'P{KK106855}VIE-260B', 1], [#, 'P{KK106857}VIE-260B', 1], [#, 'P{KK106859}VIE-260B', 1], [#, 'P{KK106861}VIE-260B', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [2, [#, [#, 'FBti0120120', 1], [#, 'FBti0120119', 1], [#, 'FBti0120118', 1], [#, 'FBti0120117', 1], [#, 'FBti0120126', 1], [#, 'FBti0129988', 1]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [2, [#, [#, 'FBti0129988', 1], [#, 'FBti0120115', 1], [#, 'FBti0120116', 1], [#, 'FBti0120117', 1], [#, 'FBti0120118', 1], [#, 'FBti0120119', 1], [#, 'FBti0120120', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [3, [#, [#, '3L:4692761..4692761', 19], [#, '3L:3250542..3250542', 20], [#, 'X:246305..246305', 21], [#, '3R:31883471..31883471', 21], [#, '2L:22237519..22237519', 37], [#, 'X:6861890..6861890', 53]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [3, [#, [#, '3R:5508394..5508394', 1], [#, '3R:9353290..9353290', 1], [#, '3R:8033496..8033496', 1], [#, '2L:17260772..17260772', 1], [#, '3L:540584..540584', 1], [#, '3L:8360935..8360935', 1], [#, '3L:11819914..11819914', 1]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). +fb_tsv_pred_stats('most-frequent', insertion_mapping, [7, [#, [#, 75, 'B', 30], [#, '12C1-12C2', 41], [#, '35D1-35D2', 44], [#, '21B4-21B6', 48], [#, '47A11-47A14', 55]]]). +fb_tsv_pred_stats('less-frequent', insertion_mapping, [7, [#, [#, '59B4-59B5', 1], [#, '79D1-79D4', 1], [#, '50C4-50C5', 1], [#, '60D5-60D6', 1], [#, '47E4-47E5', 1], [#, '47A1-47B14', 1], [#, '46B13--46E4', 1]]]). +fb_tsv_pred_stats('num-columns', 'cyto-genetic-seq', [4]). +fb_tsv_pred_stats('duplicated-rows', 'cyto-genetic-seq', [0]). +fb_tsv_pred_stats('total-rows', 'cyto-genetic-seq', [600]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [1, 600, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [2, 292, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [3, 593, object]). +fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [4, 8, object]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [3, '', 8]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [3, 8, [#, ''], [#, 8]]). +fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [4, '', 577]). +fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [4, 577, [#, ''], [#, 577]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[43]', 7], [#, '3-[47.5]', 7], [#, '3-[48]', 10], [#, '2-[55]', 13], [#, '3-[45]', 17], [#, '2-[54]', 24], [#, '3-[47]', 24]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[85]', 1], [#, '3-[84]', 1], [#, '3-[97]', 1], [#, '3-[96]', 1], [#, '3-[95]', 1], [#, '2-[69]', 1], [#, '2-[70]', 1]]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [3, [#, [#, '3L:10316396..10769950', 1], [#, '3L:9865311..10316395', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9333838..9547269', 1], [#, '3L:11174026..11254920', 1], [#, 'X:408583..660483', 1]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [3, [#, [#, 'X:408583..660483', 1], [#, '3L:8981731..9125749', 1], [#, '3L:9125750..9333837', 1], [#, '3L:9333838..9547269', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9865311..10316395', 1], [#, '3L:10316396..10769950', 1]]]). +fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 24 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, inversion, 6], [#, 'includes 1 area of non-identity', 6]]]). +fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 24 area(s) of non-identity', 1], [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 6 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, 'includes 1 area of non-identity', 6], [#, inversion, 6]]]). +fb_tsv_pred_stats('num-columns', 'genome-cyto-seq', [3]). +fb_tsv_pred_stats('duplicated-rows', 'genome-cyto-seq', [0]). +fb_tsv_pred_stats('total-rows', 'genome-cyto-seq', [5033]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [1, 5033, object]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [2, 5033, int64]). +fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [3, 5033, int64]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [3, 0, [], []]). +fb_tsv_pred_stats('num-columns', dataset_metadata, [4]). +fb_tsv_pred_stats('duplicated-rows', dataset_metadata, [0]). +fb_tsv_pred_stats('total-rows', dataset_metadata, [22220266]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [1, 3493, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [2, 3493, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [3, 1885456, object]). +fb_tsv_pred_stats('unique-values', dataset_metadata, [4, 1885453, object]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', dataset_metadata, [4, unknown, 1]). +fb_tsv_pred_stats('missing-values', dataset_metadata, [4, 1, [#, unknown], [#, 1]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [1, [#, [#, 'FBlc0000146', 67302], [#, 'FBlc0000142', 67302], [#, 'FBlc0000143', 67302], [#, 'FBlc0000137', 67302], [#, 'FBlc0000005', 161905], [#, 'FBlc0000049', 220083], [#, 'FBlc0000029', 241818]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [1, [#, [#, 'FBlc0002175', 1], [#, 'FBlc0001943', 1], [#, 'FBlc0002094', 1], [#, 'FBlc0002095', 1], [#, 'FBlc0002096', 1], [#, 'FBlc0002097', 1], [#, 'FBlc0002098', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [2, [#, [#, mE_mRNA_P15_junctions, 67302], [#, mE_mRNA_P5_junctions, 67302], [#, mE_mRNA_P6_junctions, 67302], [#, mE_mRNA_L3_12hr_junctions, 67302], [#, 'EK_EP_cDNA', 161905], [#, 'RP_cDNA', 220083], [#, 'Affymetrix_GeneChip_v2', 241818]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [2, [#, [#, 'ChIP-Seq_mE5125_HDAC1_E16', 1], [#, 'ChIP-chip_mE3893_Su(var)205_RNAi_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE2667_Su(var)205_CME-W1-Cl.8+', 1], [#, 'ChIP-chip_mE2666_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE4126_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE6074_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE3707_Su(var)205_S2-DRSC', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [3, [#, [#, 'FBgn0011217', 1890], [#, 'FBgn0015790', 1890], [#, 'FBgn0040372', 1891], [#, 'FBgn0002781', 1892], [#, 'FBgn0013263', 1896], [#, 'FBgn0020412', 1909], [#, 'FBgn0261617', 1911]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [3, [#, [#, '1616608_a_at_1350', 1], [#, 'FBsf0000240631', 1], [#, 'FBsf0000240630', 1], [#, 'FBsf0000240629', 1], [#, 'FBsf0000240628', 1], [#, 'FBsf0000240627', 1], [#, 'FBsf0000240626', 1]]]). +fb_tsv_pred_stats('most-frequent', dataset_metadata, [4, [#, [#, 'Rab11', 1890], [#, eff, 1890], [#, 'G9a', 1891], [#, 'mod(mdg4)', 1892], [#, 'Trl', 1896], [#, 'JIL-1', 1909], [#, nej, 1911]]]). +fb_tsv_pred_stats('less-frequent', dataset_metadata, [4, [#, [#, '1616608_a_at_1350', 1], [#, 'TFBS_D_002907', 1], [#, 'TFBS_D_002906', 1], [#, 'TFBS_D_002905', 1], [#, 'TFBS_D_002904', 1], [#, 'TFBS_D_002903', 1], [#, 'TFBS_D_002902', 1]]]). +fb_tsv_pred_stats('num-columns', dmel_paralogs, [11]). +fb_tsv_pred_stats('duplicated-rows', dmel_paralogs, [0]). +fb_tsv_pred_stats('total-rows', dmel_paralogs, [223055]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [1, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [2, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [3, 12, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [4, 10693, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [5, 2, int64]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [6, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [7, 10772, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [8, 12, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [9, 10693, object]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [10, 2, int64]). +fb_tsv_pred_stats('unique-values', dmel_paralogs, [11, 13, int64]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [5, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [6, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [7, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [8, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [9, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [10, 0, [], []]). +fb_tsv_pred_stats('missing-values', dmel_paralogs, [11, 0, [], []]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0040606', 1], [#, 'FBgn0030608', 1], [#, 'FBgn0263086', 1], [#, 'FBgn0263094', 1], [#, 'FBgn0030613', 1], [#, 'FBgn0037719', 1], [#, 'FBgn0013949', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [2, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [2, [#, [#, 'CG6503', 1], [#, 'Lsd-2', 1], [#, 'CG43354', 1], [#, 'CG43362', 1], [#, 'Rab3-GEF', 1], [#, bocks, 1], [#, 'Elal', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [3, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [3, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [4, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '21799330..21800904', 249], [#, '25071126..25072712', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [4, [#, [#, '7918517..7920131', 1], [#, '770363..770462', 1], [#, '11993989..11995432', 1], [#, '11997900..11999340', 1], [#, '22608670..22613656', 1], [#, '9839776..9841163', 1], [#, '5563977..5564815', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0004867', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0046247', 1], [#, 'FBgn0026702', 1], [#, 'FBgn0032699', 1], [#, 'FBgn0039454', 1], [#, 'FBgn0031077', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [7, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [7, [#, [#, 'RpS2', 1], [#, 'Sirup', 1], [#, 'CG5938', 1], [#, 'Pop1', 1], [#, 'CG10383', 1], [#, 'CG14247', 1], [#, 'THADA', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [8, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [8, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [9, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '25071126..25072712', 249], [#, '21799330..21800904', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [9, [#, [#, '9896265..9897552', 1], [#, '11126877..11129087', 1], [#, '2079919..2081286', 1], [#, '22080382..22083473', 1], [#, '17849727..17852453', 1], [#, '17830828..17841705', 1], [#, '5093976..5095910', 1]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). +fb_tsv_pred_stats('most-frequent', dmel_paralogs, [11, [#, [#, 7, 4614], [#, 6, 6222], [#, 5, 8946], [#, 4, 14762], [#, 3, 27362], [#, 2, 39938], [#, 1, 105517]]]). +fb_tsv_pred_stats('less-frequent', dmel_paralogs, [11, [#, [#, 13, 230], [#, 12, 1190], [#, 11, 2910], [#, 9, 3614], [#, 8, 3650], [#, 10, 4100], [#, 7, 4614]]]). +fb_tsv_pred_stats('num-columns', entity_publication, [4]). +fb_tsv_pred_stats('duplicated-rows', entity_publication, [344]). +fb_tsv_pred_stats('total-rows', entity_publication, [5580889]). +fb_tsv_pred_stats('unique-values', entity_publication, [1, 1952735, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [2, 1952521, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [3, 105916, object]). +fb_tsv_pred_stats('unique-values', entity_publication, [4, 63490, object]). +fb_tsv_pred_stats('missing-values', entity_publication, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', entity_publication, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', entity_publication, [3, '', 644]). +fb_tsv_pred_stats('missing-values', entity_publication, [3, 644, [#, ''], [#, 644]]). +fb_tsv_pred_stats('null-value-count', entity_publication, [4, '', 3444472]). +fb_tsv_pred_stats('missing-values', entity_publication, [4, 3444472, [#, ''], [#, 3444472]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [1, [#, [#, 'FBgn0003996', 4465], [#, 'FBgn0014446', 4694], [#, 'FBto0000342', 4872], [#, 'FBgn0014447', 5750], [#, 'FBto0000180', 5793], [#, 'FBte0000037', 11131], [#, 'FBgn0014445', 17375]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [1, [#, [#, 'FBtr0334316', 1], [#, 'FBig0000117350', 1], [#, 'FBig0000117351', 1], [#, 'FBig0000117352', 1], [#, 'FBig0000117353', 1], [#, 'FBig0000117354', 1], [#, 'FBig0000117355', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [2, [#, [#, w, 4465], [#, 'Avic\\GFP', 4694], [#, 'UASt', 4872], [#, 'Ecol\\lacZ', 5750], [#, 'UAS', 5793], [#, 'P-element', 11131], [#, 'Scer\\GAL4', 17375]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [2, [#, [#, 'lncRNA:Hsromega-RG', 1], [#, 'FBgn0037913-FBgn0286818', 1], [#, 'FBgn0025885-FBgn0286818', 1], [#, pA_site_034101, 1], [#, 'FBgn0003944-FBgn0013263', 1], [#, 'FBgn0003545-FBgn0260639', 1], [#, 'FBgn0014189-FBgn0035110', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [3, [#, [#, 'FBrf0104946', 130692], [#, 'FBrf0213603', 147340], [#, 'FBrf0239962', 162644], [#, 'FBrf0241309', 162865], [#, 'FBrf0200326', 176400], [#, 'FBrf0202436', 182332], [#, 'FBrf0105495', 545468]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [3, [#, [#, 'FBrf0201074', 1], [#, 'FBrf0126212', 1], [#, 'FBrf0134967', 1], [#, 'FBrf0144507', 1], [#, 'FBrf0125535', 1], [#, 'FBrf0155006', 1], [#, 'FBrf0086185', 1]]]). +fb_tsv_pred_stats('most-frequent', entity_publication, [4, [#, [#, 15238527.0, 40234], [#, 22936248.0, 43755], [#, 19465919.0, 49687], [#, 28851752.0, 57661], [#, 29191225.0, 75081], [#, 17994087.0, 176400]]]). +fb_tsv_pred_stats('less-frequent', entity_publication, [4, [#, [#, 17435764.0, 1], [#, 9345112.0, 1], [#, 29709602.0, 1], [#, 9013669.0, 1], [#, 12921737.0, 1], [#, 27591190.0, 1], [#, 25713358.0, 1]]]). +fb_tsv_pred_stats('num-columns', fbrf_pmid_pmcid_doi, [7]). +fb_tsv_pred_stats('duplicated-rows', fbrf_pmid_pmcid_doi, [0]). +fb_tsv_pred_stats('total-rows', fbrf_pmid_pmcid_doi, [99294]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [1, 99294, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [2, 99294, int64]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [3, 43548, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [4, 91433, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [5, 27, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [6, 99240, object]). +fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [7, 71, object]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [2, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [3, '', 55747]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [3, 55747, [#, ''], [#, 55747]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [4, '', 7862]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [4, 7862, [#, ''], [#, 7862]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [5, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [5, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [6, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [6, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [7, '', 10]). +fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [7, 10, [#, ''], [#, 10]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC365244', 1], [#, 'PMC365050', 1], [#, 'PMC365176', 1], [#, 'PMC254114', 1], [#, 'PMC6569114', 1], [#, 'PMC365333', 1]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC5728115', 1], [#, 'PMC6569114', 1], [#, 'PMC254114', 1], [#, 'PMC365176', 1], [#, 'PMC365050', 1], [#, 'PMC365244', 1], [#, 'PMC365271', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1016/s0169-4758(97)01058-2', 1], [#, '10.1007/pl00006177', 1], [#, '10.1111/j.1440-169X.1977.00345.x', 1]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1111/j.1440-169X.1977.00345.x', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1002/(SICI)1520-6327(1997)36:1<51::AID-ARCH5>3.0.CO;2-Z', 1], [#, '10.1021/bi970460d', 1], [#, '10.1002/dvg.1020150103', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, 'conference report', 178], [#, abstract, 191], [#, erratum, 306], [#, letter, 308], [#, note, 2322], [#, review, 13466], [#, paper, 81917]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, book, 1], [#, 'bibliographic list', 1], [#, poster, 1], [#, website, 1], [#, lecture, 1], [#, preprint, 1], [#, thesis, 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Dernburg, 2011, Cold Spring Harb. Protoc. 2011(12): ', 3], [#, 'Shen, 2012, Cold Spring Harb. Protoc. 2012(5): ', 3], [#, 'Marley and Baines, 2011, Cold Spring Harb. Protoc. 2011(9): ', 3], [#, 'Sweeney et al., 2012, Cold Spring Harb. Protoc. 2012(2): ', 3], [#, 'Andlauer and Sigrist, 2012, Cold Spring Harb. Protoc. 2012(4): ', 4], [#, 'Macleod, 2012, Cold Spring Harb. Protoc. 2012(7): ', 5]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Rizki et al., 1977, Dev. Growth Differ. 19(4): 345--356', 1], [#, 'Kutskova and Mamon, 1996, Genetika, Moscow 32(10): 1406--1416', 1], [#, 'Kuromi et al., 1997, Neurosci. Res. 27(2): 101--113', 1], [#, 'Kuhl and Wedlich, 1997, BioEssays 19(2): 101--104', 1], [#, 'Kosuda, 1996, Zool. Sci., Tokyo 13(6): 821--824', 1], [#, 'Kosman and Small, 1997, Development 124(7): 1343--1354', 1], [#, 'Kidd and Raff, 1997, J. Cell Sci. 110(2): 209--219', 1]]]). +fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2019_01, 667], [#, fb_2015_01, 799], [#, fb_2017_04, 959], [#, fb_2016_05, 1908], [#, fb_2021_05, 2210], [#, fb_2018_03, 6651], [#, fb_2011_10, 53869]]]). +fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2018_02, 363], [#, fb_2012_06, 375], [#, fb_2019_02, 394], [#, fb_2018_06, 402], [#, fb_2012_01, 407], [#, fb_2013_03, 410]]]). +fb_tsv_pred_stats('num-columns', organism_list, [6]). +fb_tsv_pred_stats('duplicated-rows', organism_list, [0]). +fb_tsv_pred_stats('total-rows', organism_list, [57986]). +fb_tsv_pred_stats('unique-values', organism_list, [1, 19142, object]). +fb_tsv_pred_stats('unique-values', organism_list, [2, 31712, object]). +fb_tsv_pred_stats('unique-values', organism_list, [3, 1044, object]). +fb_tsv_pred_stats('unique-values', organism_list, [4, 103, object]). +fb_tsv_pred_stats('unique-values', organism_list, [5, 960, object]). +fb_tsv_pred_stats('unique-values', organism_list, [6, 2, object]). +fb_tsv_pred_stats('null-value-count', organism_list, [1, unknown, 9]). +fb_tsv_pred_stats('missing-values', organism_list, [1, 9, [#, unknown], [#, 9]]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, '', 1]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, unknown, 7]). +fb_tsv_pred_stats('null-value-count', organism_list, [2, '.', 13]). +fb_tsv_pred_stats('missing-values', organism_list, [2, 21, [#, '', unknown, '.'], [#, 1, 7, 13]]). +fb_tsv_pred_stats('null-value-count', organism_list, [3, '', 56943]). +fb_tsv_pred_stats('missing-values', organism_list, [3, 56943, [#, ''], [#, 56943]]). +fb_tsv_pred_stats('null-value-count', organism_list, [4, '', 57883]). +fb_tsv_pred_stats('missing-values', organism_list, [4, 57883, [#, ''], [#, 57883]]). +fb_tsv_pred_stats('null-value-count', organism_list, [5, '', 57027]). +fb_tsv_pred_stats('missing-values', organism_list, [5, 57027, [#, ''], [#, 57027]]). +fb_tsv_pred_stats('null-value-count', organism_list, [6, '', 57353]). +fb_tsv_pred_stats('missing-values', organism_list, [6, 57353, [#, ''], [#, 57353]]). +fb_tsv_pred_stats('most-frequent', organism_list, [1, [#, [#, 'Anopheles', 200], [#, 'Bombus', 206], [#, 'Bactrocera', 208], [#, 'Trigonopterus', 269], [#, 'Carabus', 364], [#, 'Bembidion', 399], [#, 'Drosophila', 801]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [1, [#, [#, 'Aaages', 1], [#, 'Mononeuron', 1], [#, 'Mononychus', 1], [#, 'Monophadnus', 1], [#, 'Monophlebulus', 1], [#, 'Monoplistes', 1], [#, 'Monosiga', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [2, [#, [#, orientalis, 59], [#, 'n. sp.', 63], [#, affinis, 63], [#, japonica, 71], [#, bicolor, 73], [#, 'gen. sp.', 94], [#, 'sp.', 6204]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [2, [#, [#, prior, 1], [#, 'nr. argyropleura AHD-2011', 1], [#, argyropleura, 1], [#, ericae, 1], [#, pictellus, 1], [#, triplex, 1], [#, caudex, 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [3, [#, [#, 'Dvar', 1], [#, 'Dval', 1], [#, 'Dust', 1], [#, 'Duni', 1], [#, 'Duns', 1], [#, 'Dunm', 1]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [3, [#, [#, 'Dpac', 1], [#, 'Duns', 1], [#, 'Duni', 1], [#, 'Dust', 1], [#, 'Dval', 1], [#, 'Dvar', 1], [#, 'Dvnz', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [4, [#, [#, 'eastern newt', 1], [#, rice, 1], [#, 'Japanese medaka', 1], [#, 'red mason bee', 1], [#, 'laboratory mouse', 1], [#, 'fruit fly', 2]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [4, [#, [#, 'Chilean rose tarantula', 1], [#, 'Japanese medaka', 1], [#, rice, 1], [#, 'eastern newt', 1], [#, 'brown planthopper', 1], [#, 'common tobacco', 1], [#, 'starlet sea anemone', 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [5, [#, [#, 132243.0, 1], [#, 7244.0, 1], [#, 306030.0, 1], [#, 95458.0, 1], [#, 30050.0, 1], [#, 62873.0, 1]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [5, [#, [#, 103846.0, 1], [#, 30050.0, 1], [#, 95458.0, 1], [#, 306030.0, 1], [#, 7244.0, 1], [#, 132243.0, 1], [#, 252922.0, 1]]]). +fb_tsv_pred_stats('most-frequent', organism_list, [6, [#, [#, y, 633]]]). +fb_tsv_pred_stats('less-frequent', organism_list, [6, [#, [#, y, 633]]]). +fb_tsv_pred_stats('num-columns', stocks_FB2023_04, [7]). +fb_tsv_pred_stats('duplicated-rows', stocks_FB2023_04, [0]). +fb_tsv_pred_stats('total-rows', stocks_FB2023_04, [147006]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [1, 147006, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [2, 6, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [3, 3, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [4, 276, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [5, 142808, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [6, 143601, object]). +fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [7, 146977, object]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [2, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [2, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [3, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [3, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [4, '', 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [4, 1, [#, ''], [#, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, '', 21]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, ?, 1]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [5, 22, [#, '', ?], [#, 21, 1]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [6, '', 28]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [6, 28, [#, ''], [#, 28]]). +fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [7, '', 30]). +fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [7, 30, [#, ''], [#, 30]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [4, [#, [#, 'Dwil', 40], [#, 'Dmer', 46], [#, 'Dmau', 52], [#, 'Dvir', 77], [#, 'Dpse', 188], [#, 'Dsim', 225], [#, 'Dmel', 145074]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [4, [#, [#, 'Dora', 1], [#, 'Dgrs', 1], [#, 'Dgun', 1], [#, 'Dnec', 1], [#, 'Dprc', 1], [#, 'Dcai', 1]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [5, [#, [#, 'st[1]', 6], [#, 'w[1118]', 7], [#, 'y[1]', 10], [#, 'v[1]', 11], [#, 'w[1]', 21], [#, 'wild-type', 1649]]]). +fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [5, [#, [#, 'y[1]; M{v[+t1.8]=WKO.1-B11}ZH-86Fb', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23035/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23034/TM3, Sb[1] Ser[1]', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23027/SM1', 1], [#, 'y[1] w[*]; P{w[+mC]=GSV7}GS23024', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23023/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23022/TM3, Sb[1] Ser[1]', 1]]]). +fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [6, [#, [#, 'Dana\\wild-type', 29], [#, 'Dari\\wild-type', 31], [#, 'Dwil\\wild-type', 32], [#, 'Dsim\\wild-type', 71], [#, 'Dpse\\wild-type', 95], [#, 'Dmel\\wild-type', 96], [#, 'wild-type', 235]]]). 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+fb_tsv_pred_stats('unique-values', fb_synonym, [1, 1001254, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [2, 906, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [3, 1001062, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [4, 37453, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [5, 13823, object]). +fb_tsv_pred_stats('unique-values', fb_synonym, [6, 604083, object]). +fb_tsv_pred_stats('missing-values', fb_synonym, [1, 0, [], []]). +fb_tsv_pred_stats('missing-values', fb_synonym, [2, 0, [], []]). +fb_tsv_pred_stats('missing-values', fb_synonym, [3, 0, [], []]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [4, '', 947217]). +fb_tsv_pred_stats('missing-values', fb_synonym, [4, 947217, [#, ''], [#, 947217]]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [5, '', 985999]). +fb_tsv_pred_stats('missing-values', fb_synonym, [5, 985999, [#, ''], [#, 985999]]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [6, '', 370940]). +fb_tsv_pred_stats('null-value-count', fb_synonym, [6, none, 1]). +fb_tsv_pred_stats('missing-values', fb_synonym, [6, 370941, [#, '', none], [#, 370940, 1]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [2, [#, [#, 'Dana', 19302], [#, 'Dyak', 19532], [#, 'Dsim', 21050], [#, 'Dpse', 22860], [#, 'Scer', 30891], [#, 'Ssss', 158119], [#, 'Dmel', 551458]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [2, [#, [#, 'Ppla', 1], [#, 'Dsch', 1], [#, 'Dmar', 1], [#, 'Dlev', 1], [#, 'Dalo', 1], [#, 'Abelson', 1], [#, 'Amag', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [3, [#, [#, 'P{eve-lacZ', 8], [#, 'P{ush-lacZ.-2190.-1421}', 10], [#, 'T(2;3)ul10', 11], [#, 'P{SUPor-P.PRE', 11], [#, 'P{Fab7-w', 17], [#, 'P{Mcp-ff', 18], [#, 'P{Mcp-w', 55]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [3, [#, [#, '\\03b1-Spec[2]', 1], [#, 'Dmoj\\GI20484', 1], [#, 'Dmoj\\GI20485', 1], [#, 'Dmoj\\GI20486', 1], [#, 'Dmoj\\GI20487', 1], [#, 'Dmoj\\GI20488', 1], [#, 'Dmoj\\GI20489', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [4, [#, [#, 'Amyrel', 174], [#, 'Saccharomyces cerevisiae UAS construct a of Schertel', 180], [#, 'mt:CoII', 208], [#, 'Saccharomyces cerevisiae UAS construct a of Unknown', 215], [#, 'UAS construct a of Unknown', 235], [#, 'Deficiency (1) yellow Terminal', 251]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [4, [#, [#, 'lethal (3) rI327', 1], [#, 'Secretory Pathway Calcium atpase', 1], [#, 'transfer RNA:Cysteine-GCA 4-1', 1], [#, 'Antioxidant 1 copper chaperone', 1], [#, 'ACAT-related protein required for viability 1', 1], [#, 'ER membrane protein complex subunit 10', 1], [#, 'Structural maintenance of chromosomes 5', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [5, [#, [#, 'cytochrome oxidase II', 33], [#, microsatellite, 39], [#, 'yolk protein 1', 43], [#, 'faint little ball', 43], [#, '28S ribosomal RNA', 75], [#, 'alcohol dehydrogenase', 89]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [5, [#, [#, 'Golgin-84 ortholog|Golgin84', 1], [#, 'INACTIVE|Inactive|inactive', 1], [#, 'lethal (3) 01640', 1], [#, 'female sterile(3)272-9|humpty dumpty|lethal (3) 82Ff|lethal (3) 82Fk', 1], [#, fritz, 1], [#, 'Or46a', 1], [#, 'Gr36a', 1]]]). +fb_tsv_pred_stats('most-frequent', fb_synonym, [6, [#, [#, 'mt:CoII', 159], [#, 'Amyrel', 164], [#, 1360.0, 208], [#, 'Adh', 232], [#, unspecified, 259], [#, 'INE-1', 2235]]]). +fb_tsv_pred_stats('less-frequent', fb_synonym, [6, [#, [#, 'GA15920|dpse_GLEANR_14759', 1], [#, 'GM24315|dsec_GLEANR_7324', 1], [#, 'GM24316|dsec_GLEANR_7325', 1], [#, 'GM24317|dsec_GLEANR_7326', 1], [#, 'GM24318|dsec_GLEANR_7327', 1], [#, 'GM24319|dsec_GLEANR_7328', 1], [#, 'GM24320|dsec_GLEANR_7329', 1]]]). +fb_tsv_pred_stats('num-columns', transposon_sequence_se, [6]). +fb_tsv_pred_stats('duplicated-rows', transposon_sequence_se, [13]). +fb_tsv_pred_stats('total-rows', transposon_sequence_se, [13564]). +fb_tsv_pred_stats('unique-values', transposon_sequence_se, [1, 13382, object]). 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7.0, 2], [#, 8.0, 2], [#, 3.0, 3], [#, 6.0, 3], [#, 1.0, 3]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [5, [#, [#, 958.0, 1], [#, 158.0, 1], [#, 536.0, 1], [#, 19.0, 1], [#, 284.0, 1], [#, 588.0, 1], [#, 647.0, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [6, [#, [#, 23.0, 1], [#, 88.0, 1], [#, 8.0, 2], [#, 2.0, 2], [#, 3.0, 2], [#, 9.0, 2]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [6, [#, [#, 7.0, 1], [#, 39.0, 1], [#, 4.0, 1], [#, 6.0, 1], [#, 17.0, 1], [#, 44.0, 1], [#, 5.0, 1]]]). +fb_tsv_pred_stats('num-columns', transposon_sequence_set, [9]). +fb_tsv_pred_stats('duplicated-rows', transposon_sequence_set, [1]). +fb_tsv_pred_stats('total-rows', transposon_sequence_set, [749]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [1, 173, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [2, 1, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [3, 32, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [4, 389, int64]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [5, 600, int64]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [6, 1, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [7, 3, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [8, 2, object]). +fb_tsv_pred_stats('unique-values', transposon_sequence_set, [9, 344, object]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [1, 0, [], []]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [2, '.', 749]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [2, 749, [#, '.'], [#, 749]]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [3, 0, [], []]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [4, 0, [], []]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [5, 0, [], []]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [6, '.', 749]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [6, 749, [#, '.'], [#, 749]]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, -, 2]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, +, 576]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, '.', 171]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [7, 749, [#, -, +, '.'], [#, 2, 576, 171]]). +fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [8, '.', 171]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [8, 171, [#, '.'], [#, 171]]). +fb_tsv_pred_stats('missing-values', transposon_sequence_set, [9, 0, [], []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000176', 11], [#, 'FBte0001207', 12], [#, 'FBte0000021', 12], [#, 'FBte0000109', 12], [#, 'FBte0000037', 13], [#, 'FBte0000675', 14], [#, 'FBte0000322', 17]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000948', 1], [#, 'FBte0001188', 1], [#, 'FBte0000890', 1], [#, 'FBte0000599', 1], [#, 'FBte0000793', 1], [#, 'FBte0000139', 1], [#, 'FBte0000407', 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [2, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [2, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [3, [#, [#, start_codon, 50], [#, non_LTR_retrotransposon, 53], [#, terminal_inverted_repeat, 56], [#, three_prime_LTR, 66], [#, 'LTR_retrotransposon', 67], [#, five_prime_LTR, 67], [#, 'CDS', 227]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [3, [#, [#, region, 1], [#, dinucleotide_repeat_microsatellite_feature, 1], [#, retrotransposon, 1], [#, pseudogene, 1], [#, tetranucleotide_repeat_microsatellite_feature, 1], [#, transposable_element, 1], [#, 'SINE-like elements', 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [4, [#, [#, 1074, 3], [#, 8236, 3], [#, 172, 3], [#, 2, 3], [#, 5145, 4], [#, 331, 4], [#, 1, 285]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [4, [#, [#, 1919, 1], [#, 282, 1], [#, 946, 1], [#, 7248, 1], [#, 6957, 1], [#, 5953, 1], [#, 3811, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [5, [#, [#, 1286, 3], [#, 1728, 3], [#, 452, 3], [#, 12, 3], [#, 5034, 3], [#, 9092, 3], [#, 5519, 3]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [5, [#, [#, 600, 1], [#, 119, 1], [#, 424, 1], [#, 1593, 1], [#, 5642, 1], [#, 2624, 1], [#, 2562, 1]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [6, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [6, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [7, []]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [7, []]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). +fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [9, [#, [#, 'Ontology_term=SO:0000205', 12], [#, 'Ontology_term=SO:0000551', 24], [#, 'Ontology_term=SO:0000318', 50], [#, 'Ontology_term=SO:0000481', 56], [#, 'Ontology_term=SO:0000316', 62], [#, 'Ontology_term=SO:0000426', 67], [#, 'Ontology_term=SO:0000425', 68]]]). +fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [9, [#, [#, 'ID=FBte0001033;name=Dmel\\mariner2;source=?;type=DNA;subtype=Tc1-Mariner', 1], [#, 'ID=FBte0000773;name=Dana\\Tom;source=Z24451;type=?;subtype=?', 1], [#, 'ID=FBte0000591;name=Dmel\\invader6;source=NT_033778;type=LTR;subtype=Gypsy', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\pol;translation=KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATADGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVDQHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRLGVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQVPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESHLNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGLCGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSGVGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLMSNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVKLVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKTLERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNIGIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLTAVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGSTYSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVSKPVTTPSLDRRS', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\gag;translation=MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATERVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLAMERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASSDLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHKFDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRVLRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYEAENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAARNQSTMTDQ', 1], [#, 'ID=FBte0001136;name=Dmel\\gypsy12;source=AE003789;type=LTR;subtype=Gypsy', 1], [#, 'ID=FBte0001041;name=Dmel\\gypsy11;source=?;type=LTR;subtype=Gypsy', 1]]]). + +:- forall(fb_tsv_pred_stats(P,A1,Rest), (G=..[P,A1|Rest],assert(G))). diff --git a/metta_vspace/pyswip-want/flybase_main.pl b/metta_vspace/pyswip-want/flybase_main.pl new file mode 100755 index 00000000..1cd5fefa --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_main.pl @@ -0,0 +1,3263 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +:- multifile(fb_pred/2). +:- discontiguous(fb_pred/2). +:- dynamic(fb_pred/2). + + +:- ensure_loaded(swi_support). + + +fb_stats:- metta_stats,!. + +'&flybase':for_metta('&flybase',P):- fb_pred_nr(F,A),current_predicate(F/A),length(L,A),P=[F|L],apply(F,L). + +% ============== +% OBO LOADER +% ============== +:- set_option_value(encoding,utf8). +:- ensure_loaded(flybase_obo). + + +:- ensure_loaded(metta_interp). + + +create_flybase_qlf:- + shell('swipl -g "qcompile(whole_flybase)'). + +create_flybase_pl(_FtpDir):- create_flybase_pl. + +create_flybase_pl:- + all_data_once, + % all_metta_once, + load_flybase_full, + all_data_done. + % all_metta_done, + %shell('mv whole_metta.pl whole_flybase.pl'). + +create_flybase_pl_tiny:- + all_data_once, + % all_metta_once, + load_flybase_tiny, + all_data_done, + % all_metta_done, + shell('mv whole_metta.pl tiny_flybase.pl'). + +save_to_pl:- tell('flybase_metta.pl'), + forall(fb_pred(F,A),listing(F/A)),told. + + +real_assert(OBO):- is_converting, \+ is_loading_file(_File), !, throw(real_assert(OBO)). +real_assert(OBO):- + ignore(real_assert1(OBO)), + real_assert2(OBO). + +%real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert1(OBO):- all_metta_to(Out),!,with_output_to(Out,print_src(OBO)). +real_assert2(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). +real_assert2(OBO):- is_converting,!,throw(real_assert2(OBO)). +real_assert2(OBO):- call(OBO),!. +real_assert2(OBO):- assert(OBO). + +print_src(OBO):- format('~N'), uncompound(OBO,Src),!, write_srcH(Src). +write_srcH([F|Args]):- write('( '),write_src(F),maplist(write_srcE,Args),writeln(' )'). +write_srcE(Arg):- write(' '),write_src(Arg). + + + +is_loading_file(File):- nb_current(loading_file,File),File\==[],!. +is_loading_file(File):- nb_current(saving_file,File),File\==[]. + + + +all_data_once:- is_loading_file(_File),!. +all_data_once:- nb_setval(saving_file,'whole_metta'), + all_data_to(Out), + writeln(Out,':- encoding(utf8).'), + writeln(Out,':- style_check(-discontiguous).'), + flush_output(Out),!, + all_data_preds. +all_data_preds:- + all_data_to(Out), with_output_to(Out,all_data_preds0),!. +all_data_preds. +all_data_preds0:- + listing_c(table_n_type/3), + listing_c(load_state/2), + listing_c(is_loaded_from_file_count/2), + listing_c(fb_pred/2), + listing_c(fb_arg_type/1), + listing_c(fb_arg_table_n/3), + listing_c(fb_arg/1), + listing_c(done_reading/1),!. +:- dynamic(is_all_data_to/2). + + +all_data_to(Out):- once((is_all_data_to(File1,Out1),is_loading_file(File2))),File1==File2,!, Out = Out1. +all_data_to(Out):- is_all_data_to(File1,Out1),is_loading_file(File2),!, + close(Out1), atom_concat(File2,'.metta.datalog.tmp',File2Data), + open(File2Data,write,Out2,[alias(all_data),encoding(utf8),lock(write)]), + retract(is_all_data_to(File1,Out1)),assert(is_all_data_to(File2,Out2)), + fbug(all_data_to_switch(File1,File2)),!, + Out = Out2. +all_data_to(Out):- is_all_data_to(_File1,Out),!. +all_data_to(Out):- is_converting, is_loading_file(File2),!, atom_concat(File2,'.metta.datalog.tmp',File2Data), + open(File2Data,write,Out2), assert(is_all_data_to(File2,Out2)), + fbug(all_data_to(File2)),!, + Out = Out2. + +all_data_done:- + all_data_preds, + nb_delete(saving_file), + all_metta_done, + forall(retract(is_all_data_to(_,Out)), catch_ignore(close(Out))). + +:- if(is_converting). +:- at_halt(all_data_done). +:- endif. + +listing_c(F/A):- + format('~N~q.~n',[:-multifile(F/A)]), + format('~q.~n',[:-dynamic(F/A)]), + functor(P,F,A), + catch(forall(P,format('~q.~n',[P])),E, fbug(caused(F/A,E))). + + +:- dynamic(is_all_metta_to/2). +all_metta_to(Out):- once((is_all_metta_to(File1,Out1),is_loading_file(File2))),File1==File2,!, Out = Out1. +all_metta_to(Out):- is_all_metta_to(File1,Out1),is_loading_file(File2),!, + close(Out1), atom_concat(File2,'.metta.tmp',File2Data), + open(File2Data,write,Out2,[alias(all_metta),encoding(utf8),lock(write)]), + retract(is_all_metta_to(File1,Out1)),assert(is_all_metta_to(File2,Out2)), + fbug(all_metta_to_switch(File1,File2)),!, + Out = Out2. +all_metta_to(Out):- is_all_metta_to(_File1,Out),!. +all_metta_to(Out):- is_loading_file(File2),!, atom_concat(File2,'.metta.tmp',File2Data), + open(File2Data,write,Out2), assert(is_all_metta_to(File2,Out2)), + fbug(all_metta_to(File2)),!, + Out = Out2. + +all_metta_done:- + forall(retract(is_all_metta_to(_,Out)), catch_ignore(close(Out))). + + + + + +loaded_from_file_count(X):- flag(loaded_from_file_count,X,X). +incr_file_count(X):- flag(loaded_from_file_count,X,X+1), flag(total_loaded_symbols,TA,TA+1), flag(total_loaded_atoms,TA,TA+1). + +should_cache:- fail, loaded_from_file_count(X), option_else(max_disk_cache,Num,1000), X==Y. +should_fix_args :- fail, \+ should_sample. +should_sample :- !, fail. +should_sample :- should_show_data(_),!. +should_sample :- + once(option_value(samples_per_million,Fifty);Fifty=50), loaded_from_file_count(X), Y is X mod 1_000_000,!, Y >= 0, Y =< Fifty,!. +should_show_data(X):- loaded_from_file_count(X),!, + once((X=<13,X>=10); (X>0,(0 is X rem 1_000_000))), + format(user_error,'~N',[]), + format(user_output,'~N',[]),!, + heartbeat. +should_show_data(X):- nb_current(loading_file,F),F\==[],symbol_concat(_,'.obo',F), + loaded_from_file_count(X),Y is X mod 100_000, Y=<15,Y>=10. + + +% ============== +% VSPACE LOADER +% ============== +%:- set_option_value(max_per_file,10_000_000). +%:- set_option_value(max_per_file,1_000). +%:- set_option_value(max_per_file,300). +%:- set_option_value(max_per_file,inf+1). +:- set_option_value(max_per_file,0). +%:- set_option_value(max_per_file,20_000). +%:- set_option_value(max_per_file,20_000_000_000_000_000_000_000_000_000_000_000). +% load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'). +:- set_option_value(max_disk_cache,1000). +:- set_option_value(samples_per_million,30). +:- set_option_value(full_canon,true). + + +flybase_identifier('FBab', 'Aberration'). +flybase_identifier('FBal', 'Allele'). +flybase_identifier('FBba', 'Balancer'). +flybase_identifier('FBbt', 'AnatomyTerm'). +flybase_identifier('FBch', 'ChromosomeArm'). +flybase_identifier('FBcl', 'Clone'). +flybase_identifier('FBcv', 'ControlledVocabulary'). +flybase_identifier('FBdv', 'DevelopmentalStageTerm'). +flybase_identifier('FBgg', 'GeneGroup'). +flybase_identifier('FBgn', 'Gene'). +flybase_identifier('FBhh', 'HumanDisease'). +flybase_identifier('FBig', 'GeneInteraction'). +flybase_identifier('FBim', 'Image'). +flybase_identifier('FBlc', 'LargeDatasetMetadata'). +flybase_identifier('FBmc', 'MolecularConstruct'). +flybase_identifier('FBms', 'MolecularSegment'). +flybase_identifier('FBpl', 'Probe'). +flybase_identifier('FBpp', 'Polypeptide'). +flybase_identifier('FBrf', 'Reference'). +flybase_identifier('FBsf', 'SequenceFeature'). +flybase_identifier('FBsn', 'GeneStrain'). +flybase_identifier('FBst', 'GeneStock'). +flybase_identifier('FBtc', 'CellLine'). +flybase_identifier('FBti', 'TransposableIlementInsertion'). +flybase_identifier('FBto', 'ExperimentalTool'). +flybase_identifier('FBte', 'TransgenicElement'). +flybase_identifier('FBtp', 'Transposon'). %flybase_identifier('FBtp', 'transgenic construct or natural transposon'). +flybase_identifier('FBtr', 'Transcript'). + +% FlyBase prefixes +symbol_prefix(Prefix, flybase, Desc):- flybase_identifier(Prefix, Desc). +% Some common OBO prefixes (Note: these are more generalized and not specific to FlyBase) +symbol_prefix('GO', obo, 'Gene Ontology'). +symbol_prefix('PO', obo, 'Plant Ontology'). +symbol_prefix('DOID', obo, 'Disease Ontology'). +symbol_prefix('UBERON', obo, 'Uber-anatomy ontology'). +symbol_prefix('CHEBI', obo, 'Chemical Entities of Biological Interest'). + + +%:- abolish(gp_information/0). +:- forall(retract(fb_pred(F,0)),abolish(F/0)). +:- include(flybase_learn). + +%fbd(X,P):- fb_pred(F,A),functor(P,F,A),arg(_,P,X), no_repeats(P,call(P)). +fbdead:- fb_pred_nr(F,A),functor(P,F,A),arg(_,P,xxxxxxxxxxxxxxxxx),no_repeats(P,call(P)), + writeln(fbdead=P),fail. +fbdead. + +:- use_module(library(csv)). + +%:- current_prolog_flag(libswipl,_)->use_module(library(logicmoo_utils)); true. + + + + + +/* mined +; Total Atoms (Atomspace size): .................................................. 56,354,849 +; ConceptNodes: ............................................................. 9,472,616 +; Bytes Per Atom (Average): ....................................................... 140 +; Bytes Per ConceptNode (Average): ................................................ 120 +; Relational Memory: ............................................................ 7.39G +; ConceptNode Memory: ........................................................... 1.07G +; Atoms per minute: ......................................................... 3,491,880 +; Total Physical Memory Used: ................................................... 9.08G +; Runtime (days:hh:mm:ss): ................................................. 0:00:16:08 + + +; Total Atoms (Atomspace size): .................................................. 38,812,356 +; ConceptNodes: ............................................................. 9,380,821 +; Total Memory Used: ............................................................ 8.26G +; Runtime (days:hh:mm:ss): ................................................. 0:00:19:15 + + +; Total Atoms (Atomspace size): .................................................. 38,822,366 +; ConceptNodes: ............................................................. 9,824,355 +; Random samples: ................................................................. 805 +; Total Memory Used: ............................................................ 8.18G +; Runtime (days:hh:mm:ss): ................................................. 0:00:08:28 + +*/ + +recount_total_loaded_symbols:- flag(total_loaded_symbols,_,0),full_atom_count(Was),flag(total_loaded_symbols,_,Was). + +% Convert flybase data from CSV to Prolog format. +load_flybase:- is_scryer,!,load_flybase_files. +load_flybase:- + with_option(mettafiles,false, + (make,recount_total_loaded_symbols,!,load_flybase_files,!,cleanup_arities,!,fb_stats)). +load_flybase_dirs:- + load_flybase('./data/ftp.flybase.net/releases/current/das_precomputed/*'), + load_flybase('./precomputed_files/*'), + load_flybase('./data/ftp.flybase.net/releases/current/./*sv'),!. + + + +/* + +declare -a StringArray=(\ +"fbgn_fbtr_fbpp_expanded_*.tsv.gz" \ +"physical_interactions_mitab*.tsv.gz" \ +"dmel_gene_sequence_ontology_annotations*.tsv.gz" \ +"gene_map_table_*.tsv.gz" \ +"ncRNA_genes_fb_*.json.gz" \ +"gene_association.fb.gz" \ +"gene_genetic_interactions_*.tsv.gz" \ +"allele_genetic_interactions_*.tsv.gz" \ +"allele_phenotypic_data_*.tsv.gz" \ +"disease_model_annotations*.tsv.gz" \ +"dmel_human_orthologs_disease*.tsv.gz" \ +"fbrf_pmid_pmcid_doi*.tsv.gz") +*/ + +load_flybase_files:- + ftp_data(Dir), + with_cwd(Dir,load_flybase_files_ftp). + + + +load_flybase_das_11:- + % DAS''s 11 tsv and 1 json file + load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), + load_flybase('./precomputed_files/*/fbgn_fbtr_fbpp_expanded*.tsv'), + load_flybase('./precomputed_files/*/physical_interactions_mitab*.tsv'), + load_flybase('./precomputed_files/*/dmel_gene_sequence_ontology_annotations*.tsv'), + load_flybase('./precomputed_files/*/gene_map_table*.tsv'), + load_flybase('./precomputed_files/*/gene_association_*.fb',tsv), + load_flybase('./precomputed_files/*/gene_genetic_interactions*.tsv'), + load_flybase('./precomputed_files/*/allele_genetic_interactions*.tsv'), + % Note: this file replaces 'allele_phenotypic_data_*.tsv' from FB2023_01 onward. + load_flybase('./precomputed_files/alleles/genotype_phenotype_data*.tsv'), + load_flybase('./precomputed_files/*/allele_phenotypic_data*.tsv'), + + + load_flybase('./precomputed_files/*/disease_model_annotations*.tsv'), + load_flybase('./precomputed_files/*/dmel_human_orthologs_disease*.tsv'), + load_flybase('./precomputed_files/*/fbrf_pmid_pmcid_doi*.tsv'), + format("~n================================================================================================="), + format("~n=====================================Das Checkpoint=============================================="), + format("~n================================================================================================="), + fb_stats, + format("~n================================================================================================="), + format("~n================================================================================================="), + format("~n=================================================================================================~n"), + !. + +load_flybase_files_ftp:- + maplist(must_det_ll,[ + load_flybase('./precomputed_files/collaborators/pmid_fbgn_uniprot*.tsv'), + + %% load_flybase_obo_files, + load_flybase_das_11, + % 36 more that DAS doesnt load + + load_flybase_obo_files, + + load_flybase('./precomputed_files/alleles/fbal_to_fbgn*.tsv'), + + load_flybase('./precomputed_files/clones/cDNA_clone_data*.tsv'), + load_flybase('./precomputed_files/clones/genomic_clone_data*.tsv'), + load_flybase('./precomputed_files/collaborators/fbgn_uniprot*.tsv'), + load_flybase('./precomputed_files/collaborators/gp_information*.fb'), + load_flybase('./precomputed_files/genes/automated_gene_summaries*.tsv'), + load_flybase('./precomputed_files/genes/best_gene_summary*.tsv'), + load_flybase('./precomputed_files/genes/Dmel_enzyme_data*.tsv'), + load_flybase('./precomputed_files/genes/dmel_unique_protein_isoforms*.tsv'), + load_flybase('./precomputed_files/genes/fbgn_annotation_ID*.tsv'), + with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy1_overlaps*.tsv')), + with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy2_overlaps*.tsv')), + with_option([pred_va=false],load_flybase('./precomputed_files/genes/fbgn_fbtr_fbpp*.tsv')), + load_flybase('./precomputed_files/genes/fbgn_gleanr*.tsv'), + load_flybase('./precomputed_files/genes/fbgn_NAseq_Uniprot*.tsv'), + load_flybase('./precomputed_files/genes/gene_functional_complementation*.tsv'), + load_flybase('./precomputed_files/genes/gene_group_data*.tsv'), + load_flybase('./precomputed_files/genes/gene_groups_HGNC*.tsv'), + load_flybase('./precomputed_files/genes/gene_rpkm_matrix*.tsv'), + load_flybase('./precomputed_files/genes/gene_rpkm_report*.tsv'), + load_flybase('./precomputed_files/genes/gene_snapshots*.tsv'), + load_flybase('./precomputed_files/genes/pathway_group_data*.tsv'), + %load_flybase('./precomputed_files/insertions/construct_maps.zip'), + load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'), + load_flybase('./precomputed_files/insertions/insertion_mapping*.tsv'), + load_flybase('./precomputed_files/map_conversion/cyto-genetic-seq*.tsv'), + load_flybase('./precomputed_files/metadata/dataset_metadata*.tsv'), + load_flybase('./precomputed_files/orthologs/dmel_paralogs*.tsv'), + load_flybase('./precomputed_files/references/entity_publication*.tsv'), + load_flybase('./precomputed_files/species/organism_list*.tsv'), + load_flybase('./precomputed_files/stocks/stocks_FB*.tsv'), + load_flybase('./precomputed_files/synonyms/fb_synonym*.tsv'), + format("~n================================================================================================="), + format("~n==========================Should be 18 minute Checkpoint========================================="), + format("~n================================================================================================="), + fb_stats, + format("~n================================================================================================="), + format("~n================================================================================================="), + format("~n=================================================================================================~n"), + load_flybase('./precomputed_files/map_conversion/cytotable.txt',tsv), + load_flybase('./precomputed_files/map_conversion/genome-cyto-seq.txt',tsv), + load_fbase_after_17]), + !. + + gene_sequences:- + load_flybase('./dmel_r6.55/gff/dmel-all-r6.55.gff'), + load_flybase('./dmel_r6.55/fasta/*.fasta'), + load_flybase('./dmel_r6.55/gtf/*.gft'),!. + + +load_fbase_after_17:- + %load_flybase('./precomputed_files/genes/scRNA-Seq_gene_expression*.tsv'), + must_det_ll(load_flybase('./precomputed_files/transposons/transposon_sequence_set.gff*')), + load_flybase('./precomputed_files/transposons/transposon_sequence_set.fa'), + load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), + load_obo_files, + %% load_flybase_chado, + !. + +load_flybase_obo_files:- + load_flybase('./data/*/*/*.scm'), + load_flybase('./precomputed_files/ontologies/doid.obo'), + load_flybase('./precomputed_files/ontologies/fly_anatomy.obo'), + load_flybase('./precomputed_files/ontologies/fly_development.obo'), + load_flybase('./precomputed_files/ontologies/flybase_controlled_vocabulary.obo'), + load_flybase('./precomputed_files/ontologies/flybase_stock_vocabulary.obo'), + load_flybase('./precomputed_files/ontologies/gene_group_FB*.obo'), + load_flybase('./precomputed_files/ontologies/go-basic.obo'), + load_flybase('./precomputed_files/ontologies/image.obo'), + load_flybase('./precomputed_files/ontologies/psi-mi.obo'), + load_flybase('./precomputed_files/ontologies/slice.chebi.obo'), + load_flybase('./precomputed_files/ontologies/so-simple.obo'), + load_flybase('./precomputed_files/ontologies/chebi_fb_*.obo'), + !. + + + +/* +:- ensure_loaded('./reqs/obo_core/prolog/obo_core/goslim.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/iao_metadata.pl'). +:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/oio.pl'). +:- ensure_loaded('./reqs/obo_ro/prolog/obo_ro/ro.pl'). + +:- attach_packs('./reqs',[]). +:- ensure_loaded(library(obo_metadata)). +:- goslim:ensure_loaded(library(obo_core/goslim)). +:- ensure_loaded(library(obo_ro/ro)). + +937_381_148 +*/ + + +/* +(load_fb_obo "data/ontologies/so.obo") + +; Total Atoms (Atomspace size): ...................................................... 19,967 +; ConceptNodes: ................................................................. 4,258 +; Random samples: ................................................................. 158 +; Total Memory Used: ........................................................ 1,089,408 +; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + + +(load_fb_obo "./precomputed_files/ontologies/so-simple.obo" ) + +; Total Atoms (Atomspace size): ...................................................... 19,484 +; ConceptNodes: ................................................................. 4,194 +; Random samples: ................................................................. 160 +; Total Memory Used: ........................................................ 1,089,408 +; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + +*/ + +/* +?- xinfo('SO:0000797'). +ontology_info(id_type,'SO:0000797','Term'). +def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). +has_quality('SO:0000797','SO:0000782',' natural'). +intersection_of('SO:0000797','SO:0000101',' transposable_element'). +intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). +ontology_info(is_a,'SO:0000797','SO:0000101'). +ontology_info(is_a,'SO:0000797','SO:0001038'). +ontology_info(name,'SO:0000797',"natural_transposable_element"). +synonym('SO:0000797',"natural transposable element",'EXACT',[]). + + + +xinfo('SO:0000797'). +ontology_info(id_type,'SO:0000797','Term'). +def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). +has_quality('SO:0000797','SO:0000782',' natural'). +intersection_of('SO:0000797','SO:0000101',' transposable_element'). +intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). +ontology_info(is_a,'SO:0000797','SO:0000101'). +ontology_info(is_a,'SO:0000797','SO:0001038'). +ontology_info(name,'SO:0000797',"natural_transposable_element"). +synonym('SO:0000797',"natural transposable element",'EXACT',[]). + +*/ + +load_obo_files:- + %load_obo('./reqs/obonet/tests/data/?*.obo'), + + load_flybase('./precomputed_files/*/so*.obo'), + fb_stats, + load_flybase('./data/SO-Ontologies/Ontology_Files/*.obo'), + % Total Atoms (Atomspace size): ...................................................... 20,069 + % ConceptNodes: ................................................................. 4,200 + % Random samples: ................................................................. 159 + % Total Memory Used: ........................................................ 1,089,408 + % Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 + + load_flybase('./data/SO-Ontologies/Ontology_Files/subsets/*.obo'), + % Total Atoms (Atomspace size): ...................................................... 20,551 + % ConceptNodes: ................................................................. 4,270 + % Random samples: ............................................................... 2,928 + % Total Memory Used: ........................................................ 1,154,944 + % Runtime (days:hh:mm:ss): ................................................. 0:00:00:40 + + load_flybase('./data/Legacy/Cross_Products/*.obo'), + %load_flybase('./data/*/*/*.obo'), + + % Total Atoms (Atomspace size): ...................................................... 20,968 + % ConceptNodes: ................................................................. 4,306 + % Random samples: .............................................................. 14,418 + % Total Memory Used: ........................................................ 9,828,592 + % Runtime (days:hh:mm:ss): ................................................. 0:00:01:14 + %print_loaded_from_files, + %loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). + % only reflects new entries ... thus full OBO adds 481 entries to the simple one + %loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). + + %loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). + %loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). + %loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). + %loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). + %loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). + %loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). + %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). + %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). + + load_flybase('./precomputed_files/*/*.obo'), + % Total Atoms (Atomspace size): ................................................... 3,489,211 + % ConceptNodes: ............................................................... 688,541 + % Random samples: .............................................................. 26,006 + % Total Memory Used: ............................................................ 1.19G + % Runtime (days:hh:mm:ss): ................................................. 0:00:34:35 + print_loaded_from_files, +%loaded_from_file(2_637_502, './precomputed_files/ontologies/chebi_fb_2023_04.obo'). +%loaded_from_file( 451_168, './precomputed_files/ontologies/go-basic.obo'). +%loaded_from_file( 221_705, './precomputed_files/ontologies/fly_anatomy.obo'). +%loaded_from_file( 128_798, './precomputed_files/ontologies/doid.obo'). +%loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). +%loaded_from_file( 9_852, './precomputed_files/ontologies/psi-mi.obo'). +%loaded_from_file( 8_644, './precomputed_files/ontologies/gene_group_FB2023_04.obo'). +%loaded_from_file( 7_605, './precomputed_files/ontologies/flybase_controlled_vocabulary.obo'). +%loaded_from_file( 1_598, './precomputed_files/ontologies/fly_development.obo'). +%loaded_from_file( 834, './precomputed_files/ontologies/image.obo'). +%loaded_from_file( 491, './precomputed_files/ontologies/flybase_stock_vocabulary.obo'). +%loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). +%loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). +%loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). +%loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). +%loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). +%loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). +%loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). +%loaded_from_file( 25, './precomputed_files/ontologies/so-simple.obo'). +%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). +%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). +%loaded_from_file( 21, './precomputed_files/ontologies/slice.chebi.obo'). + !. + + + + + + +load_flybase_chado:- % 359 tables with 937,381,148 rows + + with_option([row_1_is_header=true,max_per_file=100_000],load_flybase('./data/tsv_exports/public/*.tsv')). + + +est_size( 22_220_267, dataset_metadata). +est_size( 5_580_889, entity_publication). +est_size( 2_928_712, gene_rpkm_report). +est_size( 2_262_949, pmid_fbgn_uniprot). +est_size( 1_611_349, ontology_info). +est_size( 1_316_132, fbgn_NAseq_Uniprot). +est_size( 1_045_549, property_value). +est_size( 1_001_254, synonym). +est_size( 722_570, cDNA_clone). +est_size( 384_206, genotype_phenotype). +est_size( 363_453, allele_genetic_interactions). +est_size( 288_469, fbal_to_fbgn). +est_size( 245_829, gene_map_table). +est_size( 223_056, dmel_paralogs). +est_size( 212_010, insertion_mapping). +est_size( 174_894, fbgn_gleanr). +est_size( 147_155, stocks). +est_size( 99_294, fbrf_pmid_pmcid_doi). +est_size( 57_986, organism_list). +est_size( 51_248, physical_interactions_mitab). +est_size( 50_401, genomic_clone). +est_size( 38_591, dmel_gene_sequence_ontology_annotations). +est_size( 35_732, fbgn_fbtr_fbpp_expanded). +est_size( 35_732, fbgn_fbtr_fbpp). +est_size( 35_107, dmel_human_orthologs_disease). +est_size( 32_530, fbgn_uniprot). +est_size( 32_143, best_gene_summary). +est_size( 27_827, receives_synaptic_input_in_region). +est_size( 27_370, automated_gene_summaries). +est_size( 26_750, disease_model_annotations). +est_size( 22_453, dmel_unique_protein_isoforms). +est_size( 20_392, sends_synaptic_output_to_region). +est_size( 20_322, gene_genetic_interactions). +est_size( 17_901, fbgn_annotation_ID). +est_size( 17_748, gene_rpkm_matrix). +est_size( 14_139, part_of). +est_size( 13_986, gene_snapshots). +est_size( 13_394, seq). +est_size( 12_497, fbgn_exons2affy1_overlaps). +est_size( 13_746, fbgn_exons2affy2_overlaps). +est_size( 10_958, gene_group). +est_size( 5_680, has_synaptic_IO_in). +est_size( 3_969, 'Dmel_enzyme'). +est_size( 3_120, regulates). +est_size( 2_704, negatively_regulates). +est_size( 2_692, positively_regulates). +est_size( 2_126, has_soma_location). +est_size( 1_941, overlaps). +est_size( 1_744, develops_from). +est_size( 1_711, gene_groups_HGNC). +est_size( 1_149, sends_synaptic_output_to_cell). +est_size( 993, pathway_group). +est_size( 738, receives_synaptic_input_from_neuron). +est_size( 706, fasciculates_with). +est_size( 601, 'cyto-genetic-seq'). +est_size( 572, has_sensory_dendrite_in). +est_size( 526, continuous_with). +est_size( 464, gene_functional_complementation). +est_size( 311, synapsed_via_type_Ib_bouton_to). +est_size( 287, innervates). +est_size( 239, immediately_preceded_by). +est_size( 229, has_fasciculating_neuron_projection). +est_size( 200, synapsed_via_type_II_bouton_to). +est_size( 186, receives_synaptic_input_throughout). +est_size( 185, substage_of). +est_size( 165, has_quality). +est_size( 156, has_part). +est_size( 151, def). +est_size( 148, synapsed_via_type_Is_bouton_to). +est_size( 126, attached_to). +est_size( 100, subsetdef). +est_size( 89, receives_input_from). +est_size( 88, disjoint_from). +est_size( 74, sends_synaptic_output_throughout). +est_size( 68, develops_into). +est_size( 64, derives_from). +est_size( 30, has_origin). +est_size( 30, electrically_synapsed_to). +est_size( 23, develops_directly_from). +est_size( 20, attached_to_part_of). +est_size( 18, synonymtypedef). +est_size( 17, innervated_by). +est_size( 14, synapsed_via_type_III_bouton_to). +est_size( 11, has_synaptic_IO_throughout). +est_size( 9, transitive_over). +est_size( 8, composed_primarily_of). +est_size( 7, transcribed_to). +est_size( 7, inverse_of). +est_size( 6, conditionality). +est_size( 6, adjacent_to). +est_size( 4, non_functional_homolog_of). +est_size( 3, xref). +est_size( 3, variant_of). +est_size( 3, member_of). +est_size( 3, develops_from_part_of). +est_size( 3, contains). +est_size( 3, 'RO'). +est_size( 2, connected_to). +est_size( 1, transcribed_from). +est_size( 1, guided_by). +% SQL +sql_est_size( 248_392_753,feature_relationship). +sql_est_size( 141_933_326,dbxrefprop). +sql_est_size( 98_464_501,featureloc). +sql_est_size( 92_616_769,feature). +sql_est_size( 78_909_674,analysisfeature). +sql_est_size( 61_025_741,feature_dbxref). +sql_est_size( 53_031_862,library_featureprop). +sql_est_size( 39_950_319,dbxref). +sql_est_size( 27_923_221,library_feature). +sql_est_size( 23_805_221,feature_relationshipprop). +sql_est_size( 21_279_999,featureprop). +sql_est_size( 7_474_185,feature_synonym). +sql_est_size( 6_554_427,synonym). +sql_est_size( 5_578_280,feature_pub). +sql_est_size( 5_341_100,featureprop_pub). +sql_est_size( 4_865_118,feature_relationship_pub). +sql_est_size( 2_813_405,feature_interactionprop). +sql_est_size( 2_464_355,feature_cvterm). +sql_est_size( 1_950_807,feature_cvtermprop). +sql_est_size( 1_377_258,feature_interaction). +sql_est_size( 1_116_490,feature_genotype). +sql_est_size( 888_210,pubprop). +sql_est_size( 734_870,featureloc_pub). +sql_est_size( 688_734,pubauthor). +sql_est_size( 518_569,genotype_synonym). +sql_est_size( 495_848,genotype). +sql_est_size( 491_538,feature_pubprop). +sql_est_size( 466_209,phenstatement). +sql_est_size( 413_338,pub_dbxref). +sql_est_size( 382_054,genotype_dbxref). +sql_est_size( 351_942,phendesc). +sql_est_size( 277_992,phenotype_comparison_cvterm). +sql_est_size( 254_298,feature_expressionprop). +sql_est_size( 252_544,phenotype_comparison). +sql_est_size( 251_928,pub). +sql_est_size( 242_344,pub_relationship). +sql_est_size( 227_406,feature_expression). +sql_est_size( 213_360,cvterm_relationship). +sql_est_size( 212_142,cvterm_dbxref). +sql_est_size( 209_164,interaction_cvterm). +sql_est_size( 195_000,cvtermsynonym). +sql_est_size( 180_311,expression_cvterm). +sql_est_size( 167_582,update_track). +sql_est_size( 150_401,feature_relationshipprop_pub). +sql_est_size( 149_855,stockcollection_stock). +sql_est_size( 149_855,stock). +sql_est_size( 149_835,stock_genotype). +sql_est_size( 146_846,interactionprop). +sql_est_size( 122_004,interaction_group). +sql_est_size( 119_611,feature_interaction_pub). +sql_est_size( 112_784,interaction_pub). +sql_est_size( 112_781,interaction). +sql_est_size( 101_687,interaction_group_feature_interaction). +sql_est_size( 96_405,feature_grpmember_pub). +sql_est_size( 94_765,cvterm). +sql_est_size( 79_466,expression_cvtermprop). +sql_est_size( 74_873,interactionprop_pub). +sql_est_size( 73_828,library_interaction). +sql_est_size( 57_144,organism). +sql_est_size( 48_730,humanhealthprop). +sql_est_size( 41_075,feature_grpmember). +sql_est_size( 36_960,expression). +sql_est_size( 23_565,library_cvterm). +sql_est_size( 23_483,library_cvtermprop). +sql_est_size( 21_251,cvtermprop). +sql_est_size( 19_797,libraryprop). +sql_est_size( 18_396,phenotype). +sql_est_size( 17_871,phenotype_cvterm). +sql_est_size( 16_617,humanhealth_dbxrefprop). +sql_est_size( 16_529,interaction_expressionprop). +sql_est_size( 16_318,humanhealth_pub). +sql_est_size( 15_400,library_synonym). +sql_est_size( 15_355,humanhealth_dbxref). +sql_est_size( 15_142,cell_line_feature). +sql_est_size( 14_972,libraryprop_pub). +sql_est_size( 13_694,interaction_expression). +sql_est_size( 13_218,interaction_cell_line). +sql_est_size( 10_720,library_pub). +sql_est_size( 9_870,library_relationship). +sql_est_size( 9_851,humanhealthprop_pub). +sql_est_size( 9_558,library_dbxref). +sql_est_size( 8_339,library_relationship_pub). +sql_est_size( 7_095,grp_pub). +sql_est_size( 6_719,cell_line_pub). +sql_est_size( 6_657,grp_relationship). +sql_est_size( 6_605,strain_synonym). +sql_est_size( 5_990,grp_synonym). +sql_est_size( 5_947,humanhealth_synonym). +sql_est_size( 5_785,strainprop). +sql_est_size( 5_783,strainprop_pub). +sql_est_size( 5_769,library). +sql_est_size( 5_543,grp_cvterm). +sql_est_size( 5_444,cell_line_synonym). +sql_est_size( 5_277,library_expression). +sql_est_size( 5_187,grpprop). +sql_est_size( 5_159,grpmember). +sql_est_size( 4_469,humanhealth_dbxrefprop_pub). +sql_est_size( 4_450,library_expressionprop). +sql_est_size( 4_415,grpprop_pub). +sql_est_size( 4_319,stock_cvterm). +sql_est_size( 3_832,library_dbxrefprop). +sql_est_size( 3_829,grpmemberprop). +sql_est_size( 3_777,genotype_cvterm). +sql_est_size( 3_744,humanhealth_featureprop). +sql_est_size( 3_721,library_strainprop). +sql_est_size( 3_721,library_strain). +sql_est_size( 3_625,humanhealth_feature). +sql_est_size( 2_641,grp_dbxref). +sql_est_size( 2_263,humanhealth_relationship). +sql_est_size( 2_220,humanhealth_relationship_pub). +sql_est_size( 2_093,strain_pub). +sql_est_size( 2_010,grp_relationship_pub). +sql_est_size( 1_939,strain_cvtermprop). +sql_est_size( 1_939,strain_cvterm). +sql_est_size( 1_814,grp). +sql_est_size( 1_777,strain_dbxref). +sql_est_size( 1_776,strain). +sql_est_size( 1_739,organism_dbxref). +sql_est_size( 1_643,feature_humanhealth_dbxref). +sql_est_size( 1_540,humanhealth_cvtermprop). +sql_est_size( 1_540,humanhealth_cvterm). +sql_est_size( 1_515,humanhealth). +sql_est_size( 1_300,cell_lineprop_pub). +sql_est_size( 1_291,cell_lineprop). +sql_est_size( 1_215,cell_line_dbxref). +sql_est_size( 1_198,cell_line_libraryprop). +sql_est_size( 1_081,cell_line_library). +sql_est_size( 1_013,organism_pub). +sql_est_size( 821,organismprop). +sql_est_size( 731,organismprop_pub). +sql_est_size( 714,cell_line_cvterm). +sql_est_size( 518,db). +sql_est_size( 435,strain_relationship_pub). +sql_est_size( 435,strain_relationship). +sql_est_size( 320,cell_line). +sql_est_size( 308,analysis). +sql_est_size( 238,stockprop). +sql_est_size( 171,cell_line_relationship). +sql_est_size( 139,strain_featureprop). +sql_est_size( 139,strain_feature). +sql_est_size( 107,strain_phenotypeprop). +sql_est_size( 96,humanhealth_pubprop). +sql_est_size( 73,cell_line_cvtermprop). +sql_est_size( 71,cv). +sql_est_size( 54,strain_phenotype). +sql_est_size( 40,environment). +sql_est_size( 27,stockcollectionprop). +sql_est_size( 26,contact). +sql_est_size( 18,environment_cvterm). +sql_est_size( 11,organism_library). +sql_est_size( 7,stockcollection). +sql_est_size( 1,lock). +sql_est_size( 0,analysisgrp). +sql_est_size( 0,analysisgrpmember). +sql_est_size( 0,analysisprop). +sql_est_size( 0,audit_chado). +sql_est_size( 0,cell_line_strain). +sql_est_size( 0,cell_line_strainprop). +sql_est_size( 0,cvtermpath). +sql_est_size( 0,eimage). +sql_est_size( 0,expression_image). +sql_est_size( 0,expression_pub). +sql_est_size( 0,expressionprop). +sql_est_size( 0,feature_cvterm_dbxref). +sql_est_size( 0,feature_phenotype). +sql_est_size( 0,featuremap). +sql_est_size( 0,featuremap_pub). +sql_est_size( 0,featurepos). +sql_est_size( 0,featurerange). +sql_est_size( 0,genotype_cvtermprop). +sql_est_size( 0,genotype_pub). +sql_est_size( 0,genotypeprop). +sql_est_size( 0,genotypeprop_pub). +sql_est_size( 0,grp_pubprop). +sql_est_size( 0,grp_relationshipprop). +sql_est_size( 0,grpmember_cvterm). +sql_est_size( 0,grpmember_pub). +sql_est_size( 0,grpmemberprop_pub). +sql_est_size( 0,humanhealth_phenotype). +sql_est_size( 0,humanhealth_phenotypeprop). +sql_est_size( 0,interaction_cvtermprop). +sql_est_size( 0,library_grpmember). +sql_est_size( 0,library_humanhealth). +sql_est_size( 0,library_humanhealthprop). +sql_est_size( 0,organism_cvterm). +sql_est_size( 0,organism_cvtermprop). +sql_est_size( 0,organism_grpmember). +sql_est_size( 0,project). +sql_est_size( 0,stock_dbxref). +sql_est_size( 0,stock_pub). +sql_est_size( 0,stock_relationship). +sql_est_size( 0,stock_relationship_pub). +sql_est_size( 0,stockprop_pub). +sql_est_size( 0,tableinfo). + +est_size_loaded(N,F/A):- fb_pred_major(F,A),metta_stats(F,A,N). + +fb_pred_major(F,A):- fb_pred_m(F,A). +fb_pred_major(F,A):- fb_pred_nr(F,A), + \+ fb_pred_m(F,A), \+ (fb_pred(F,A2),A2>A). + +fb_pred_m(fbgn_exons2affy1_overlaps,2). +fb_pred_m(fbgn_exons2affy2_overlaps,2). + +print_loaded_from_files:- + findall(print_est_size(loaded_from_file,N,F), + is_loaded_from_file_count(F,N),L), + sort(L,S),reverse(S,R),maplist(call,R), + print_est_sizes. + +fb_info:- print_loaded_from_files,fb_stats. + +fb_show:- print_loaded_from_files,fb_stats. + +print_est_sizes:- + findall(print_est_size(est_size_loaded,N,F), + est_size_loaded(N,F),L), + sort(L,S),reverse(S,R),maplist(call,R). + +print_est_size(F,N1,S):- number(S), \+ number(N1),!,print_est_size(F,S,N1). +print_est_size(F,N1,S):- format('~N (~q ~@ ~q) ',[F,pad_number(N1,15),S]),!. + +% pad_number(Number, N) pads Number with spaces to occupy N spaces in total +% and includes underscores as the thousand separator. +pad_number(Number, N) :- + sformat(S,"~t~D~*|", [Number,N]),symbolic_list_concat(L,',',S), + symbolic_list_concat(L,'_',SS),write(SS). + + +% Process a file or directory path with a given predicate. +with_wild_path(Fnicate, Dir) :- extreme_debug(fbug(with_wild_path(Fnicate, Dir))),fail. +with_wild_path(_Fnicate, []) :- !. +with_wild_path(Fnicate, Dir) :- is_scryer, symbol(Dir), !, must_det_ll((path_chars(Dir,Chars), with_wild_path(Fnicate, Chars))). +with_wild_path(Fnicate, Chars) :- \+ is_scryer, \+ symbol(Chars), !, must_det_ll((name(Atom,Chars), with_wild_path(Fnicate, Atom))). +with_wild_path(Fnicate, File) :- exists_file(File), !, must_det_ll(( call(Fnicate, File))). +with_wild_path(Fnicate, File) :- !, with_wild_path_swi(Fnicate, File). +with_wild_path(Fnicate, Dir) :- exists_directory(Dir), !, + must_det_ll((directory_files(Dir, Files), + maplist(directory_file_path(Dir,Files),Paths), + maplist(path_chars,Paths,CharPaths), + maplist(with_wild_path(Fnicate), CharPaths))), !. +with_wild_path(Fnicate, File) :- is_list(File), !, must_det_ll((maplist(with_wild_path(Fnicate), File))). +with_wild_path(Fnicate, File) :- must_det_ll((call(Fnicate, File))). + +path_chars(A,C):- symbol_chars(A,C). + +with_wild_path_swi(Fnicate, File) :- + compound(File), + absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(directory)]), + '\\=@='(Dir, File), !, + with_wild_path(Fnicate, Dir). +with_wild_path_swi(Fnicate, File) :- + compound(File), !, + absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(['csv', 'tsv', ''])]), + '\\=@='(Dir, File), !, + with_wild_path(Fnicate, Dir). +with_wild_path_swi(Fnicate, File) :- + symbol_contains(File, '*'), + expand_file_name(File, List), !, + maplist(with_wild_path(Fnicate), List). +with_wild_path_swi(Fnicate, File) :- + exists_directory(File), + directory_file_path(File, '*.*sv', Wildcard), + expand_file_name(Wildcard, List), !, + maplist(Fnicate, List). + + +:- dynamic(fix_columns_nth/2). +needs_fixed(X,Y):- (var(X)->fb_arg(X);true),fix_concept(X,L),(L\=@=[X],L\=@=X),(L=[Y]->true;Y=L). +mine_args_that_need_reduced:- + writeln('\n\n\n=====\n\n\n'), + forall(needs_fixed(X,Y),(pp_as(needs_fixed(X->Y)),fix_columns_with_arg(X))), + listing(fix_columns_nth). + +fix_columns_with_arg(Arg):- + forall(fb_arg_table_n(Arg,Fn,N), + fix_columns_n(Fn,N)). +fix_columns_n(Fn,N):- + assert_new(fix_columns_nth(Fn,N)). + + +load_fb_mask(Filename):- is_scryer,symbol(Filename),name(Filename,Chars),!,load_fb_mask(Chars). +load_fb_mask(Filename):- expand_file_name(Filename,Files1),maplist(load_fb_cache,Files1). +load_fb_cache(File):- with_wild_path(load_fb_cache0,File). +load_fb_cache0(RFile):- + absolute_file_name(RFile,File), + file_name_extension(Name,_E,File), + symbolic_list_concat([Pub,Table],'.',Name), + symbolic_list_concat([Pub,Table,qlf],'.',OutputFile),!, + load_fb_cache(File,OutputFile,Table). +load_fb_cache0(File):- file_name_extension(Name,_E,File), + symbolic_list_concat([Table],'.',Name), + symbolic_list_concat([Table,qlf],'.',OutputFile), + load_fb_cache(File,OutputFile,Table). + +% ============================================================================ +% LOAD FB Files +% ============================================================================ +track_load_into_file(RelFilename,Goal):- + must_det_ll(absolute_file_name(RelFilename,Filename)), + must_det_ll(track_load_into_file0(Filename,Goal)),!. + +track_load_into_file0(Filename,Goal):- nb_current(tracking_file,FilenameW), Filename==FilenameW, !,call(Goal). +track_load_into_file0(Filename,Goal):- + must_det_ll(( + nb_setval(tracking_file,Filename), + start_html_of(Filename), + fbug(track_load_into_file(Filename)), + flag(loaded_from_file_count,Was,0))), + must_det_ll(with_option(loading_file, Filename, time(must_det_ll(Goal)))), + must_det_ll(( + flag(loaded_from_file_count,New,Was), + ((New>0 ; \+ is_loaded_from_file_count(Filename,_))->assert(is_loaded_from_file_count(Filename,New));true), + fbug(Filename=New), + rename_tmp_files(Filename), + save_html_of(Filename))),!. + +rename_tmp_files(_Filename):- \+ is_converting,!. +rename_tmp_files(Filename):- rename_tmp_files(Filename,'.metta'),rename_tmp_files(Filename,'.metta.datalog'). + +rename_tmp_files(Filename,NonTmp):- atomic_list_concat([Filename,NonTmp,'.tmp'],From), + atomic_list_concat([Filename,NonTmp],To), + fbug(rename_file(From,To)), + ignore((exists_file(From),rename_file(From,To))). + +:- dynamic(is_loaded_from_file_count/2). + +:- use_module(library(http/json)). +:- ensure_loaded(flybase_json). +load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), + current_predicate(load_flybase_json/2), + absolute_file_name(File,Filename), + track_load_into_file(Filename,load_flybase_json(Fn,File)). + +load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), + setup_call_cleanup(open(File,read,In,[encoding(utf8)]), json:json_read(In,Term,[]), close(In)), + time(assert(saved_fb_json(File,Term,Fn))). + + +% ============================== +% GFF/GTF/GFF3 Reader +% ============================== + +load_fb_gff(Fn,Filename):- + track_load_into_file(Filename, + must_det_ll(( + fbug(load_fb_gff(Fn,Filename)), + directory_file_path(Directory, BaseName, Filename), + file_name_extension(Id, _, BaseName), + Type = 'SequenceFile', + assert_OBO(id_type(Id,Type)), + assert_OBO(pathname(Id,Filename)),!, + assert_OBO(basename(Id,BaseName)),!, + assert_OBO(directory(Id,Directory)),!, + setup_call_cleanup(open(Filename,read,In), (repeat,load_fb_gff_read(Id,In)), close(In))))). + % Main predicate to parse a GFF line and store it as facts +load_fb_gff_read(_Fn,In):- (at_end_of_stream(In);reached_file_max),!. +load_fb_gff_read(Fn,In):- read_line_to_string(In,Line), load_fb_gff_line(Fn,Line),!,fail. + +load_fb_gff_line(Fn,Line) :- % Predicate to process a line starting with ##sequence-region + split_string(Line, " \t", " \t", ['##sequence-region', SeqID, StartStr, EndStr]), + atom_number(StartStr, Start), atom_number(EndStr, End),!, + assert_MeTTa(genomic_sequence_region(Fn,SeqID,Start,End)). +load_fb_gff_line(_Fn,Line) :- split_string(Line, " \t", " \t", ['##gff-version'|_]),!. +load_fb_gff_line(_Fn,Line) :- string_concat('#', _, Line),!. +load_fb_gff_line(Fn,Line) :- + split_string(Line, "\t", "", [SeqID, Source, Type, StartStr, EndStr, ScoreStr, Strand, Phase | MoreProps]), + atom_number(StartStr, Start), + atom_number(EndStr, End), + store_gff_fact(Fn,SeqID, "source", Source), + store_gff_fact(Fn,SeqID, "type", Type), + store_gff_fact(Fn,SeqID, "start", Start), + store_gff_fact(Fn,SeqID, "end", End), + store_gff_fact(Fn,SeqID, "score", ScoreStr), + store_gff_fact(Fn,SeqID, "strand", Strand), + store_gff_fact(Fn,SeqID, "phase", Phase), + parse_and_store_attributes(SeqID, MoreProps). +load_fb_gff_line(Fn,Line):- fbug(load_fb_gff_line(Fn,Line)). +% Predicate to store each field as a fact +store_gff_fact(Fn,SeqID, Key, Value) :- + Value \= ".", + assert_MeTTa(genomic_sequence_feature(Fn, SeqID, Key, Value)). +% Predicate to handle the attributes field +parse_and_store_attributes(Fn, SeqID, [AttributesStr | _]) :- + split_string(AttributesStr, ";", "", AttrList), + maplist(parse_and_store_attribute(Fn, SeqID), AttrList). +% Parse individual attribute and store it +parse_and_store_attribute(Fn, SeqID, AttrStr) :- + (split_string(AttrStr, "=", "\"", [Key, Value])->true;split_string(AttrStr, " ", "\"", [Key | Value])), + store_gff_fact(Fn,SeqID, Key, Value). +/* + +find . \( -name "*.fa" -o -name "*.gff" -o -name "*.json" \) -execdir bash -c 'for file; do metta_pattern="${file%.*}"*metta*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Metta file does not exist for $full_path"; fi; done' bash {} \; | sort -r + +find . ! -name "*.metta" - -execdir bash -c 'for file; do metta_pattern="${file%.*}"*metta*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Metta file does not exist for $full_path"; fi; done' bash {} \; | sort -r + +find . \( -name "*.fa" -o -name "*.gff" -o -name "*.json" \) -execdir bash -c 'for file; do metta_pattern="${file%.*}"*datalog*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Datalog file does not exist for $full_path"; fi; done' bash {} \; | sort -r + +*/ + +% ============================== +% FA/FASTA Reader +% ============================== + +load_fb_fa(Fn,Filename):- + track_load_into_file(Filename, + must_det_ll(( + fbug(load_fb_fa(Fn,Filename)), + directory_file_path(Directory, BaseName, Filename), + file_name_extension(Id, _, BaseName), + Type = 'SequenceFile', + assert_OBO(id_type(Id,Type)), + assert_OBO(pathname(Id,Filename)),!, + assert_OBO(basename(Id,BaseName)),!, + assert_OBO(directory(Id,Directory)),!, + setup_call_cleanup(open(Filename,read,In), load_fb_fa_read(Id,In,_,0), close(In))))). +load_fb_fa_read(_Fn,In, _, _):- (at_end_of_stream(In);reached_file_max),!. +load_fb_fa_read(Fn,In,FBTe,At):- read_line_to_string(In,Str), load_fb_fa_read_str(Fn,In,FBTe,Str,At). + +load_fb_fa_read_str(Fn,In,_,Str,_):- string_concat('>',Line,Str),!, + split_string(Line, " \t", " \t", [FBTe|Props]),!, + parse_and_store_attributes(FBTe, Props), + load_fb_fa_read(Fn,In,FBTe,0). + +load_fb_fa_read_str(Fn,In,FBTe,Str,From):- + atom_chars(Str,Chars), + Data =..[fasta_sequence,Fn,FBTe,From,Chars], + assert_MeTTa(Data),!, + length(Chars,Plus), + At is From+Plus, + load_fb_fa_read(Fn,In,FBTe,At). + +maybe_sample(_Fn,_Args):- \+ should_sample,!. +maybe_sample( Fn, Args):- assert_arg_samples(Fn,1,Args). + +:- dynamic(fb_arg/1). +:- dynamic(fb_arg_table_n/3). +assert_arg_table_n(A,Fn,N):- assert_new(fb_arg(A)), assert_new(fb_arg_table_n(A,Fn,N)). + +assert_arg_samples(Fn,N,[A|Args]):- + (dont_sample(A)->true;assert_arg_table_n(A,Fn,N)), + N2 is N+1, assert_arg_samples(Fn,N2,Args). +assert_arg_samples(_,_,_). + +dont_sample(N):- \+ symbol(N). dont_sample(''). dont_sample('-'). + +data_pred0(X,Y):- symbolic_list_concat(List,'/',X),List\==[],List\=[_],!,last(List,L),data_pred0(L,Y). +data_pred0(X,Y):- symbol_concat(YY,'.tsv',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'.fb',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'_',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat(YY,'_fb',X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbol_concat('public.',YY,X),!,data_pred0(YY,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'.',X),L=[_,_|_],symbolic_list_concat(L,'_',XL),!,data_pred0(XL,Y). +%data_pred0(X,Y):- symbolic_list_concat([L,_|_],'_fb_2',X),!,data_pred0(L,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_0',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_1',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_2',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_3',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_4',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_5',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_6',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_7',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_8',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb_9',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +data_pred0(X,Y):- symbolic_list_concat(L,'_fb__',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). +%data_pred0(X,Y):- symbolic_list_concat(List,'_',X),once(not_trimmed_path(List,NewList)), +% NewList\==[],NewList\==List,symbolic_list_concat(NewList,'_',Y),!. +data_pred0(X,X). + +data_pred(X,Y):- data_pred0(X,Y), Y\=='',!. +data_pred(X,X). + + +%file_to_sep(_File,9). +file_to_sep(csv,','). +file_to_sep(tsv,'\t'). +file_to_sep(metta_x,'\t'). +file_to_sep(File,Sep):- file_name_extension(_,Ext,File),clause(file_to_sep(Ext,Sep),true),!. +file_to_sep(_,'\t'). + +is_swipl:- \+ is_scryer. + +:- if(is_scryer). +read_line_to_chars(S,L):- is_scryer,!,get_line_to_chars(S,L,[]). +:- endif. +read_line_to_chars(S,L):- read_line_to_string(S,Str),string_chars(Str,L). + + +% Assert a given term if no variant of it already exists in the database. +% Usage: fb_assert(+Term). +fb_assert(Term) :- + % Check if Term is a rule (Head :- Body) or a fact (just Head). + ( Term = (Head :- Body) + -> copy_term(Body, CopiedBody) + ; (Head = Term, CopiedBody = true) + ), + % Copy the Head to generate a new term with fresh variables. + copy_term(Head, CopiedHead), + % If no variant of CopiedHead exists in the database with the same body, + % assert Term; otherwise, succeed without asserting Term. + ( \+ (clause(CopiedHead, CopiedBody), variant(CopiedHead, Head)) + -> assertz(Term) + ; true + ). + +:- dynamic(done_reading/1). + +use_metta_x:- fail. + +load_fb_cache(_File,OutputFile,_Fn):- exists_file(OutputFile),!,ensure_loaded(OutputFile),!. +load_fb_cache(File,_OutputFile,_Fn):- load_files([File],[qcompile(large)]). + + +'load_flybase_tiny':- load_flybase(20_000). +'load_flybase_full':- load_flybase(1_000_000_000_000_000_000_000_000_000_000_000_000_000_000_000). +'save_flybase_full':- load_flybase_full,qsave_program. + +load_flybase(N):- (number(N)->true;N==inf),!, + with_option([max_per_file=N], + (option_value(max_per_file,Max),write(max_per_file=Max),load_flybase)). +load_flybase(File):- file_name_extension(_,Ext,File),!, load_flybase(File,Ext). + +:- export(load_flybase/1). +:- system:import(load_flybase/1). + +load_flybase(File,Ext):- + with_wild_path(load_flybase0(Ext),File),!. + + +exists_with_ext(File,Ext):- atom_concat(File,Ext,Res),exists_file(Res),!. + +load_flybase0(Ext,File):- Ext=='',file_name_extension(_,Ext2,File),Ext2\=='',!,load_flybase0(Ext2,File). +load_flybase0(Ext,_File):- Ext=='pl',!. +load_flybase0(Ext,_File):- Ext=='metta', is_converting,!. +load_flybase0(Ext,_File):- Ext=='datalog', is_converting,!. +load_flybase0(_Ext, File):- is_converting,exists_with_ext(File,'.metta'),(exists_with_ext(File,'.datalog');exists_with_ext(File,'.metta.datalog')),!. +load_flybase0(Ext,File):- + must_det_ll((file_name_extension(Name,_,File), + data_pred(Name,Fn),load_flybase(Ext,File,Fn))). + +:- dynamic(load_state/2). +%load_flybase(_Ext,_File,OutputFile,_Fn):- exists_file(OutputFile),size_file(OutputFile,N),N>100,!. +load_flybase(_Ext,File,_Fn):- load_state(File,_),!. +load_flybase(Ext,File,Fn):- + must_det_ll(( + assert(load_state(File,loading)), + fbug(load_flybase(Ext,File,Fn)), + load_flybase_ext(Ext,File,Fn), + ignore(retract(load_state(File,loading))), + assert(load_state(File,loaded)),fb_stats)). + +load_flybase_ext(_Ext,File,_Fn):- use_metta_x, atom_concat(File,'.metta_x',MFile), + exists_file(MFile), \+ is_converting, % Ext \== 'obo', + \+ option_value(metta_x_files,false),!, + process_metta_x_file(MFile). +load_flybase_ext(_Ext,File,_Fn):- fail, atom_concat(File,'.metta',MFile), + exists_file(MFile), \+ is_converting, % Ext \== 'obo', + \+ option_value(mettafiles,false),!, + load_flybase_metta(MFile). +load_flybase_ext(Ext,File,_Fn):- Ext==obo,current_predicate(load_obo/1),!,load_obo(File). +load_flybase_ext(Ext,File,_Fn):- Ext==scm,include_atomspace_1_0(File). +load_flybase_ext(Ext,File, Fn):- Ext==json,!,load_fb_json(Fn,File),!. +load_flybase_ext(Ext,File, Fn):- Ext==gff,!,load_fb_gff(Fn,File),!. +load_flybase_ext(Ext,File, Fn):- Ext==gff3,!,load_fb_gff(Fn,File),!. +load_flybase_ext(Ext,File, Fn):- Ext==fa,!,load_fb_fa(Fn,File),!. +load_flybase_ext(Ext,File, Fn):- Ext==fasta,!,load_fb_fa(Fn,File),!. +load_flybase_ext(Ext,File,_Fn):- Ext==metta,current_predicate(load_metta/2),!,load_flybase_metta(File). +load_flybase_ext(Ext,File, Fn):- file_to_sep(Ext,Sep),!, + track_load_into_file(File, + setup_call_cleanup(open(File,read,Stream), + must_det_ll(load_flybase_sv(Sep,File,Stream,Fn)), + close(Stream))),!. +load_flybase_ext(Ext,File, Fn):- fbug(missed_loading_flybase(Ext,File,Fn)),!. + +%load_flybase_metta(File):- !, load_metta('&flybase',File). +load_flybase_metta(File):- + with_option('trace-on-load',false, + with_option('current_self','&flybase', + include_atomspace_1_0(File))). +/* + (EvaluationLink + (PredicateNode "has_name") + (ListLink + (DiseaseOntologyNode "DOID:0001816") + (ConceptNode "angiosarcoma"))) + + + load_metta('&flybase',File)). +*/ +include_atomspace_1_0(RelFilename):- + absolute_file_name(RelFilename,Filename), + track_load_into_file(Filename, + must_det_ll(( + atom(RelFilename), + current_self(Self), + exists_file(RelFilename),!, + must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), + ((directory_file_path(Directory, _, Filename), + assert(metta_file(Self,Filename,Directory)), + with_cwd(Directory, + must_det_ll( load_atomspace_1_0_file_stream(Filename,Self,In))))),close(In))))))). + +load_atomspace_1_0_file_stream(Filename,Self,In):- + once((is_file_stream_and_size(In, Size) , Size>102400) -> P2 = read_sform2 ; P2 = read_metta),!, + with_option(loading_file,Filename, + %current_exec_file(Filename), + ((must_det_ll(( + set_exec_num(Filename,1), + %load_answer_file(Filename), + set_exec_num(Filename,0))), + once((repeat, (( + current_read_mode(Mode), + once(call(P2, In,Expr)), %write_src(read_atomspace_1_0=Expr),nl, + must_det_ll((((do_atomspace_1_0(file(Filename),Mode,Self,Expr,_O)))->true; + pp_m(unknown_do_atomspace_1_0(file(Filename),Mode,Self,Expr)))), + flush_output)), + at_end_of_stream(In)))))),!. + +% ['InheritanceLink',['DiseaseOntologyNode','DOID:0112326'],['DiseaseOntologyNode','DOID:0050737']] +do_atomspace_1_0(_W,_M,_S,end_of_file,_O):-!. +do_atomspace_1_0(W,M,S,E,_O):- + rewrite_as10_to_as20(E,E2,Extras),!, + maplist(do_atomspace_2_0(W,M,S),[E2|Extras]). + +do_atomspace_2_0(_W,_M,_S,E):- + assert_OBO(E), + !. % writeq(E),!,nl. + +rewrite_as10_to_as20(A,A,[]):- \+ is_list(A). +rewrite_as10_to_as20([CN,Arg],Arg,[]):- CN='ConceptNode',!. +rewrite_as10_to_as20([ConceptNode,Arg1],Arg,[is_a(Arg,ConceptNode)|R]):- atom(ConceptNode),atom_concat(_Concept,'Node',ConceptNode),!, + rewrite_as10_to_as20(Arg1,Arg,R),!. +rewrite_as10_to_as20(['EvaluationLink',['PredicateNode',Pred],['ListLink'|Args]], Res, + [arity(Pred,Len),is_a(Pred,'Predicate')|ExtrasF]):- + length(Args,Len),maplist(rewrite_as10_to_as20,Args,ArgsL,Extras), flatten(Extras,ExtrasF), + Res =.. [Pred|ArgsL]. + + +rewrite_as10_to_as20([InheritanceLink|Args],[Inheritance|ArgsL],ExtrasF):- + atom(InheritanceLink),atom_concat(Inheritance,'Link',InheritanceLink), + maplist(rewrite_as10_to_as20,Args,ArgsL,Extras), flatten(Extras,ExtrasF),!. + +rewrite_as10_to_as20(A,A,[]). + +fix_list_args(_,_,Y,Y):- option_value(early_canon,[]), \+ should_sample,!. +%fix_list_args(_Fn,_ArgTypes,[X],[X]):- !. +fix_list_args(Fn,ArgTypes,Args,NewArgs):- + must_det_ll(( + primary_term(Fn,ArgTypes,Args,Term,NewArgTypes), + fix_elist_args(Term,Fn,1,NewArgTypes,Args,NewArgs), + extreme_debug(ignore(((Args \== NewArgs,fbug(NewArgs))))))). +fix_list_args(_Fn,_ArgTypes,Args,Args):-!. + +primary_term(_Fn,[N|ArgTypes],_Args,_Term,ArgTypes):- number(N),!. +primary_term(_Fn,[N|ArgTypes],Args,Term,ArgTypes):- number(N),!,nth1(N,Args,Term). +primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes):-!. +primary_term(_Fn,ArgTypes,Args,Term,NewArgTypes):- + append(L,[primary(Name)|R],ArgTypes), + append(L,[Name|R],NewArgTypes), + length(L,N),nth0(N,Args,Term). +primary_term( Fn,ArgTypes,Args,Term,ArgTypes):- + primary_column(Fn,Name), + nth1(N,ArgTypes,Name),!, + nth1(N,Args,Term),!. +primary_term(_Fn,ArgTypes,[Term|_],Term,ArgTypes):-!. +primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes). + +fix_elist_args(Term,Fn,N,[Nth|ArgTypes],Args,NewArgs):- number(Nth),!,fix_elist_args(Term,Fn,N,ArgTypes,Args,NewArgs). +fix_elist_args(Term,Fn,N,[Type|ArgTypes],[Concept|Args],[Arg|NewArgs]):- !, + must_det_ll((adjust_type(Term,Fn,N,Type,Concept,Arg), N2 is N +1, fix_elist_args(Term,Fn,N2,ArgTypes,Args,NewArgs))). +fix_elist_args(_Term,_Fn,_N,_,X,X). + +adjust_type(Term,Fn,N,listOf(Type),Arg,NewL):- must_det_ll((nonvar(Type),as_list([],Arg,New),is_list(New), + maplist(adjust_type(Term,Fn,N,Type),New,NewL))). +adjust_type(Term,Fn,N,listOf(Type,Seps),Arg,NewL):- must_det_ll((nonvar(Type),as_list(Seps,Arg,New),is_list(New), + maplist(adjust_type(Term,Fn,N,Type),New,NewL))). +adjust_type(Term,Fn,N,Type,Concept,Arg):- numeric_value_p_n(Fn,N,_),!, + must_det_ll(((into_number(Concept,Arg)->true;(Concept=Arg)),assert_type_of(Term,Fn,N,Type,Arg))). +adjust_type(Term,Fn,N,Type,Concept,Arg):- must_det_ll((fix_concept(Concept,Arg), assert_type_of(Term,Fn,N,Type,Arg))). +adjust_type(_Term,_Fn,_N,_,X,X). + +into_number(Concept,Arg):- number(Concept),!,Arg = Concept. +into_number(Concept,Arg):- symbol_number(Concept,Arg),!. +into_number(Concept,Arg):- Concept=Arg,!. + +:- dynamic(fb_arg/1). +:- dynamic(fb_arg_table_n/3). +assert_type_of(_Term,_Fn,_N,_Type,_Arg):- \+ should_sample,!. +assert_type_of(Term,Fn,N,Type,Arg):- is_list(Arg),!,maplist(assert_type_of(Term,Fn,N,Type),Arg). +assert_type_of(_Term,Fn,N,_Type,Arg):- + must_det_ll(( + assert_new(fb_arg(Arg)), + assert_new(fb_arg_table_n(Arg,Fn,N)))). + +:- dynamic(fb_arg_type/1). +:- dynamic(table_n_type/3). +add_table_n_types(_Fn,_,ArgTypes):- \+ is_list(ArgTypes),!. +add_table_n_types(Fn,1,[N|ArgTypes]):- number(N),!, + add_table_n_types(Fn,1,ArgTypes). +add_table_n_types(Fn,N,[Type|ArgTypes]):-!, + sub_term(Sub,Type),symbol(Sub),!, + assert_new(fb_arg_type(Sub)), + assert_new(table_n_type(Fn,N,Sub)), + N2 is N+1, add_table_n_types(Fn,N2,ArgTypes),!. +add_table_n_types(_Fn,_,[]). + +is_concept(Arg):- fb_arg(Arg). +is_concept_type(Type):- fb_arg_type(Type). + +arg_table_n_type(Arg,Fn,N,Type):- table_n_type(Fn,N,Type),once((fb_pred(Fn,A),functor(G,Fn,A), arg(N,G,Arg),call(G), + \+ is_list(Arg), \+ as_list(Arg,[]))). + +is_valuesymbol(Fn,N,Type):- arg_table_n_type(Arg,Fn,N,Type),symbol_number(Arg,_). + +:- dynamic(numeric_value_p_n/3). +fis_valuesymbol(PNList,Len):- findall(P-N,is_valuesymbol(P,N,_Type),PNList),length(PNList,Len). + +save_value_symbol_cols:- for_all(is_valuesymbol(Fn,N,Type),assert_new(numeric_value_p_n(Fn,N,Type))), + listing(numeric_value_p_n/3). + + +/* +load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn):- + flag(loaded_from_file_count,_,0), + ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), + fix_header_names(Fn,Header,ArgTypes), + for_all((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), + for_all((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), + if_t(is_list(ArgTypes),set_option_value(fb_argtypes,ArgTypes)), + time((repeat, + read_line_to_chars(Stream, Chars), + once(load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn)), + once(done_reading(File);reached_file_max;at_end_of_stream(Stream)),!, + once(end_fb_file_data(File,Stream,Fn,OutputStream)), + loaded_from_file_count(X),!, + fb_stats(Fn), + pl_stats(File,X))). + +write_flybase_data(_OutputStream,_Fn,[]):-!. +write_flybase_data(_OutputStream,_Fn,['']):-!. +write_flybase_data(_OutputStream,Fn,DataL):- assert_MeTTa(Fn,DataL). + +FBgn: FlyBase gene number - Represents a gene. +FBal: FlyBase allele number - Represents an allele. +FBst: FlyBase stock number - Represents a stock. +FBtp: FlyBase transposon number - Represents a transposon. +FBab: FlyBase aberration number - Represents a chromosomal aberration. +FBba: FlyBase balancer number - Represents a balancer. +FBcl: FlyBase clone number - Represents a DNA or RNA clone. +FBim: FlyBase image number - Represents an image. +FBpp: FlyBase polypeptide number - Represents a protein. +FBtr: FlyBase transcript number - Represents a transcript. +FBte: FlyBase transgenic element number - Represents a transgenic element. +*/ + +write_flybase_data(_ArgTypes,_Fn,[]):-!. +write_flybase_data(_ArgTypes,_Fn,['']):-!. +write_flybase_data(_ArgTypes,_Fn,[_]):-!. +write_flybase_data(_ArgTypes,Fn,DataL0):- + maplist(fast_column,DataL0,DataL), !, Data=..[Fn|DataL], assert_MeTTa(Data). +%write_flybase_data(_ArgTypes,Fn,DataL):- into_datum(Fn,DataL,Data), assert_OBO(Data). + + +/* + +assert_MeTTa(Data):- Data=..[Fn|DataL],assert_MeTTa(Fn,DataL),!. + +assert_MeTTa(Fn,DataL0):- + make_assertion(Fn,DataL0,Data,OldData), + ignore(( + heartbeat, + functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + flag(loaded_from_file_count,X,X+1), + flag(total_loaded_symbols,TA,TA+1), + assert(Data), + ignore((((has_list(_ArgTypes)->(X<23,X>20); (X<13,X>10)); (X>0,(0 is X rem 1_000_000),fb_stats)),nl,nl,fbug(X=Data),ignore((OldData\==DataL0,fbug(oldData=OldData))))), + ignore((fail,catch_ignore(ignore((X<1000,must_det_ll((write_canonical(OutputStream,Data),writeln(OutputStream,'.')))))))))),!. + */ + +make_assertion(Fn, Cols, NewData, OldData):- !, make_assertion4(Fn, Cols, NewData, OldData). + +make_assertion(Fn,DataL0,Data,DataL0):- + must_det_ll(( + into_datum(Fn,DataL0,Data0), + Data0=..[F|Args], + Args=DataL, + Data=..[F|DataL])). + +make_assertion(ArgTypes,Fn,DataL0,Data,DataL0):- + must_det_ll(( + into_datum(Fn,DataL0,Data0), + Data0=..[F|Args], + skip(if_t(var(ArgTypes),must_det_ll((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), + fix_list_args(Fn,ArgTypes,Args,DataL), + Data=..[F|DataL])). + + +% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 +%reprefix(['GO_','GO--','FBgn','BiologicalProcess:GO:'],'GO:'). +reprefix(['GO_','GO--','BiologicalProcess:GO:'],'GO:'). +reprefix(['flybase:','FLYBASE:','comment:'],''). +reprefix(['FBpp:'],'FBpp'). +reprefix(['FBgn:'],'FBgn'). +reprefix(['FB:FB'],'FB'). +%./KBs/SUMO-OBO/gene-merged-SUMO.kif +%# +%FBbt_00051628= + +as_list(A,New):- is_list(A),!,A=New. +as_list(N,[N]):- \+ symbol(N), \+ string(N),!. +%as_list(A,New):- var(A),!,New = [A]. +as_list('-',[]). as_list("-",[]). as_list('',[]). +as_list("",[]). as_list(' ',[]). as_list(" ",[]). +%as_list(N,[N]):- !. +as_list(_,S,O):- as_list(S,O),!. +as_list(SepL,A,List):- member(Sep,SepL),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!. +%as_list(_,A,ListO):- member(Sep,['|',',',';']),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!,maplist(fix_concept,List,ListO). +as_list(_Sep,A,[A]). +has_list(Header):- is_list(Header),member(listOf(_),Header). + +% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 + +% ======================================= +% Fix Concept1 +% ======================================= + +fix_concept1(A,L):- as_list(['|'],A,L),(L\=@=[A],A\=@=L). +fix_concept1(A,N):- symbol_number(A,N),!. +%fix_concept1(A,AO):- reprefix(List,To),member(E,List),symbol_concat(E,AM,A),symbol_concat(To,AM,AO). +%fix_concept1(A,AO):- symbol_concat('FB',_,A),symbolic_list_concat([Type,Number],':',A),!,symbol_concat(Type,Number,AO). +fix_concept1(A,AO):- symbol_concat('"',Mid,A),symbol_concat(AS,'"',Mid),symbol_string(AS,AO). +fix_concept1(A,AO):- symbol_concat(AO,'(gene name)',A),AO\==''. + +fix_concept1(A,N):- symbol(A),!,N=A. +%fix_concept(S,A):- number_string(A,S),!. + + +% ======================================= +% Fix Concept +% ======================================= + +fix_concept(A,New):- is_list(A),!,maplist(fix_concept,A,L),!,New=L. +fix_concept(A,New):- \+ symbol(A), !,New=A. +fix_concept(S,O):- once(fix_concept1(S,M)),S\=@=M,!,fix_concept(M,O). +fix_concept(A,New):- =(A,New),!. + + +fix_columns_nth('genome-cyto-seq', 1). +fix_columns_nth('genome-cyto-seq', 2). +fix_columns_nth('genome-cyto-seq', 3). +fix_columns_nth(allele_genetic_interactions, 3). +fix_columns_nth(dmel_human_orthologs_disease, 6). +fix_columns_nth(dmel_human_orthologs_disease, 7). +fix_columns_nth(dmel_paralogs, 10). +fix_columns_nth(dmel_paralogs, 11). +fix_columns_nth(dmel_paralogs, 5). +fix_columns_nth(dmel_paralogs, 8). +fix_columns_nth(entity_publication, 4). +fix_columns_nth(fbgn_NAseq_Uniprot, 7). +fix_columns_nth(fbrf_pmid_pmcid_doi, 2). +fix_columns_nth(gene_genetic_interactions, 1). +fix_columns_nth(gene_genetic_interactions, 2). +fix_columns_nth(gene_genetic_interactions, 3). +fix_columns_nth(gene_genetic_interactions, 4). +fix_columns_nth(gene_groups_HGNC, 4). +fix_columns_nth(gene_rpkm_matrix, _). +fix_columns_nth(gene_rpkm_report, 10). +fix_columns_nth(gene_rpkm_report, 11). +fix_columns_nth(gene_rpkm_report, 8). +fix_columns_nth(gene_rpkm_report, 9). +fix_columns_nth(gene_snapshots, 4). +fix_columns_nth(genotype_phenotype, 5). +fix_columns_nth(genotype_phenotype, 6). +fix_columns_nth(gp_information, 9). +fix_columns_nth(insertion_mapping, 5). +fix_columns_nth(insertion_mapping, 6). +fix_columns_nth(physical_interactions_mitab, _). +fix_columns_nth(pmid_fbgn_uniprot, 2). +fix_columns_nth(stocks, 7). +fix_columns_nth(synonym, 5). +fix_columns_nth(synonym, 6). +fix_columns_nth(transposon_sequence_set, 4). +fix_columns_nth(transposon_sequence_set, 5). +fix_columns_nth(transposon_sequence_set, 8). + + + +:- discontiguous column_description/4. +:- discontiguous primary_column/2. +:- discontiguous column_names/2. +:- discontiguous file_location/2. + + + +% 466_896_429 +% Descriptions for allele_genetic_interactions columns +% Descriptions for genotype_phenotype_data columns +% For the file allele_genetic_interactions_*.tsv +% For the file genotype_phenotype_data_*.tsv + + + +load_flybase(Sep,File,Stream,Fn):- + must_det_ll(( + %ignore(swi_only(format(":- ~q.\n",[encoding(utf8)]))), + symbolic_list_concat([data,Fn],'_',Fn0), + data_pred(Fn0,Fn), + load_flybase_sv(Sep,File,Stream,Fn))). + +% Sep,File,Stream,OutputStream,Fn +load_flybase_sv(Sep,File,Stream,Fn):- at_end_of_stream(Stream),!, + once(load_fb_data(_ArgTypes,File,Stream,Fn,Sep,end_of_file)). + +load_flybase_sv(Sep,File,Stream,Fn):- + must_det_ll(( + flag(loaded_from_file_count,_,0), + ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), + fix_header_names(Fn,Header,ArgTypes), + forall((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), + forall((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), + ((primary_column(Fn,Name),nth1(N,ArgTypes,Name))->NArgTypes=[N|ArgTypes];NArgTypes=[1|ArgTypes]), + if_t(is_list(ArgTypes),add_table_n_types(Fn,1,ArgTypes)), + ground(NArgTypes), + if_t(is_list(ArgTypes),ignore((length(ArgTypes,A),decl_fb_pred(Fn,A)))), + time((repeat, + read_line_to_chars(Stream, Chars), + once(load_flybase_chars(NArgTypes,File,Stream,Fn,Sep,Chars)), + once(reached_file_max;done_reading(File);at_end_of_stream(Stream)),!, + once(load_fb_data(NArgTypes,File,Stream,Fn,Sep,end_of_file)))), + loaded_from_file_count(X),!, + metta_stats(Fn), + pl_stats(File,X))),!. + + +%save_conversion_data(ArgTypes,Fn,OutputStream,Data):- maplist(write_flybase_data(ArgTypes,ArgTypes,Fn,OutputStream),Data). + +is_really_header_row([H|_],_Names):- symbol_concat('',_,H),!. + +process_metta_x_file(MXFile):- + data_pred(MXFile,Fn), + setup_call_cleanup(open(MXFile,read,In,[encoding(utf8)]), + ((repeat, + read_line_to_string(In,Chars), + (In == end_of_file -> ! ; + once((atomic_list_concat(Row0,'\t', Chars), + maplist(fast_column,Row0,Row), + assert_MeTTa([Fn|Row])))))), + close(In)). + +fast_column(X,X):- !. +fast_column(X,Y):- into_fb_term(X,Y),!. +fast_column(X,X). + +%read_csv_stream(Sep,CharsStream,Header):- read_string(CharsStream, "\n", "\r\t ",_,) +read_csv_stream(Sep,CharsStream,Header):- % \+ option_value(full_canon,[]),!, + read_line_to_string(CharsStream,Chars), + (Chars == end_of_file -> Header= Chars ; symbolic_list_concat(Header, Sep, Chars)). +read_csv_stream(Sep,CharsStream,Header):- \+ option_value(full_canon,[]),!, read_line_to_string(CharsStream,Chars), + (Chars == end_of_file -> Header= Chars ; split_string(Chars, Sep, "\s\t\n", Header)). +read_csv_stream(Sep,CharsStream,Header):- + name(Sep,[SepCode]), + csv_options(CompiledHeaderOptions,[separator(SepCode)]), + csv_read_row(CharsStream, HeaderRow, CompiledHeaderOptions), + HeaderRow=..[_|Header],!. + +read_csv(Sep,Chars,Header):- \+ option_value(full_canon,[]),!, split_string(Chars, Sep, "\s\t\n", Header). +read_csv(Sep,Chars,Header):- + open_string(Chars,CharsStream),read_csv_stream(Sep,CharsStream,Header). + + +attempt_header_row(Sep,Chars,Fn,Header,ArgTypes):- + read_csv(Sep,Chars,Header), + fix_header_names(Fn,Header,ArgTypes),!. + +:- dynamic(t_h_n/3). + +load_flybase_chars(ArgTypes,File,_Stream,_Fn,Sep,Chars):- + ( \+ member(Sep,Chars); (['#','#',' '|_]=Chars) ; (ground(ArgTypes),['#'|_]=Chars)), + %writeln(comment(Sep)=Chars),!, + (format("~n ; ~s",[Chars])), + ignore((loaded_from_file_count(X),X>2000,!,assert(done_reading(File)))). + +load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- + var(ArgTypes),member(Sep,Chars),['#'|_]=Chars, + (format("~n ; Maybe Header: ~s",[Chars])), + attempt_header_row(Sep,Chars,Fn,Header,ArgTypes), + is_really_header_row(Header,ArgTypes), + (fbug(t_h_n(Fn,Header,ArgTypes)),fb_assert(t_h_n(Fn,Header,ArgTypes))),!, + load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). + +load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- is_swipl, + attempt_header_row(Sep,Chars,Fn,Header,_), + write_flybase_data([N|ArgTypes],Fn,Header),!, + load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). + + +load_fb_data(_ArgTypes,File,_Stream,_Fn,_Sep,Data):- + (Data == end_of_file;done_reading(File)),!. + +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- % \+ option_value(full_canon,[]), !, + (option_value(max_per_file,Max)->true;Max=inf), + fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), + add_table_n_types(Fn,1,ArgTypes),!,% trace, + repeat, + once(read_csv_stream(Sep,Stream,Data)), + loaded_from_file_count(X), + (((Data== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; + (once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. + +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- !, + name(Sep,[SepCode]), + csv_options(CompiledOptions,[separator(SepCode)]), + (option_value(max_per_file,Max)->true;Max=inf), + fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), + add_table_n_types(Fn,1,ArgTypes),!, + repeat, + once((csv_read_row(Stream, RData, CompiledOptions))), + loaded_from_file_count(X), + (((RData== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; + (RData =..[_|Data], + once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. + +% recursion depth 16 million rows +load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- + name(Sep,[SepCode]), + csv_options(CompiledOptions,[strip(true),convert(true),separator(SepCode)]), + (option_value(max_per_file,Max)->true;Max=inf), + once((csv_read_row(Stream, RData, CompiledOptions))), + loaded_from_file_count(X), + (((RData== end_of_file);(X>Max)) -> assert(done_reading(File)) ; + (RData =..[_|Data], once(write_flybase_data(ArgTypes,Fn,Data)), + load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl))),!. + + + +column_description('allele_FBal#', "Current FlyBase identifier (FBal#) of allele.", identifier, 'Allele Identifier'). +column_description('allele_symbol', "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). +column_description('Bin_value', "The expression bin classification of this gene in this RNA-Seq experiment, based on RPKM value.", numeric, 'Expression Bin'). +column_description('Cluster_Cell_Type_ID', "The FlyBase FBbt ID for the cell type represented by the cell cluster.", identifier, 'Cell Type'). +column_description('Cluster_Cell_Type_Name', "The FlyBase name for the cell type represented by the cell cluster.", name, 'Cell Type Name'). +column_description('Cluster_ID', "The FlyBase FBlc ID for the dataset representing the cell cluster.", identifier, 'Cell Cluster'). +column_description('Cluster_Name', "The FlyBase name for the dataset representing the cell cluster.", name, 'Cell Cluster Name'). +column_description('Clustering_Analysis_ID', "The FlyBase FBlc ID for the dataset representing the clustering analysis.", identifier, 'Dataset'). +column_description('Clustering_Analysis_Name', "The FlyBase name for the dataset representing the clustering analysis.", name, 'Dataset Name'). +column_description('Count_used', "Indicates if the RPKM expression value was calculated using only the exonic regions unique to the gene and not overlapping exons of other genes (Unique), or, if the RPKM expression value was calculated based on all exons of the gene regardless of overlap with other genes (Total).", category, 'Count Type'). +column_description('DATASAMPLE_NAME_(DATASET_ID)', "Each subsequent column reports the gene RPKM values for the sample listed in the header.", matrix, 'Expression Matrix'). +column_description('FBgn', "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). +column_description('FBgn_id', "Unique FlyBase gene ID.", identifier, 'Gene'). +column_description('FBrf#', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('FBrf', "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('FBrf_id', "FlyBase reference ID for the publication.", identifier, 'Reference'). +column_description('Gene_ID', "The FlyBase FBgn ID for the expressed gene.", identifier, 'Gene'). +column_description('Gene_Symbol', "The FlyBase symbol for the expressed gene.", symbol, 'Gene Symbol'). +column_description('GeneSymbol', "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). +column_description('interaction', "Interaction information associated with allele.", text, 'Interaction Info'). +column_description('Interaction_type', "Type of interaction observed, either 'suppressible' or 'enhanceable'.", category, 'Interaction Type'). +column_description('Mean_Expression', "The average level of expression of the gene across all cells of the cluster.", numeric, 'Expression Level'). +column_description('Parent_library_FBlc', "The unique FlyBase ID for the dataset project to which the RNA-Seq experiment belongs.", identifier, 'Dataset Project'). +column_description('Parent_library_name', "The official FlyBase symbol for the dataset project to which the RNA-Seq experiment belongs.", name, 'Dataset Project Name'). +column_description('phenotype_id', "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). +column_description('phenotype_name', "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). +column_description('PMID', "PubMed ID for the publication.", identifier, 'Publication'). +column_description('Pub_ID', "The FlyBase FBrf ID for the reference in which the expression was reported.", identifier, 'Publication'). +column_description('Pub_miniref', "The FlyBase citation for the publication in which the expression was reported.", citation, 'Publication Citation'). +column_description('Publication_FBrf', "Current FlyBase identifier (FBrf) of publication from which the data came.", identifier, 'Publication Reference'). +column_description('reference', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). +column_description('Release_ID', "The D. melanogaster annotation set version from which the gene model used in the analysis derives.", version, 'Annotation Version'). +column_description('RNASource_FBlc', "The unique FlyBase ID for the RNA-Seq experiment used for RPKM expression calculation.", identifier, 'RNA-Seq Experiment'). +column_description('RNASource_name', "The official FlyBase symbol for the RNA-Seq experiment used for RPKM expression calculation.", name, 'RNA-Seq Experiment Name'). +column_description('RPKM_value', "The RPKM expression value for the gene in the specified RNA-Seq experiment.", numeric, 'Expression Value'). +column_description('Source_Tissue_Anatomy', "The ansymbolical region of the source tissue used for the experiment.", category, 'Tissue Anatomy'). +column_description('Source_Tissue_Sex', "The sex of the source tissue used for the experiment.", category, 'Tissue Sex'). +column_description('Source_Tissue_Stage', "The life stage of the source tissue used for the experiment.", category, 'Tissue Stage'). +column_description('Spread', "The proportion of cells in the cluster in which the gene is detected.", proportion, 'Expression Spread'). +column_description('Total_exon_base_count', "The number of bases in all exons of this gene.", numeric, 'Total Exonic Base Count'). +column_description('UniProt_database', "Database in UniProt where the protein is listed (either UniProt/TrEMBL or UniProt/Swiss-Prot).", category, 'Protein Database'). +column_description('UniProt_id', "Unique identifier for the protein in UniProt.", identifier, 'Protein'). +column_description('Unique_exon_base_count', "The number of exonic bases unique to the gene (not overlapping exons of other genes).", numeric, 'Exonic Base Count'). +column_description(allele_FBal, "Current FlyBase identifier (FBal) of allele.", identifier, 'Allele Identifier'). +column_description(allele_symbol, "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). +column_description(current_fullname, "Current full name used in FlyBase for the object.", name, 'Name'). +column_description(current_symbol, "Current symbol used in FlyBase for the object.", symbol, 'Symbol'). +column_description(gene_fullname, "The official full name for this gene.", name, 'Gene Name'). +column_description(gene_primary_id, "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). +column_description(gene_symbol, "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). +column_description(gene_type, "The type of gene.", category, 'Gene Type'). +column_description(interaction, "Interaction information associated with allele.", text, 'Interaction Info'). +column_description(listOf('genotype_FBids', ['/', ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). +column_description(listOf('genotype_symbols', ['/', ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). +column_description(listOf('Interacting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the interacting genotype.", list, 'Gene Identifier'). +column_description(listOf('Interacting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the interacting genotype.", list, 'Gene Symbol'). +column_description(listOf('qualifier_ids', ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). +column_description(listOf('qualifier_names', ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). +column_description(listOf('Starting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the starting genotype.", list, 'Gene Identifier'). +column_description(listOf('Starting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the starting genotype.", list, 'Gene Symbol'). +column_description(listOf(fullname_synonym, ['|']), "Non-current full name(s) associated with the object.", list, 'Name Synonyms'). +column_description(listOf(genotype_FBids, [/, ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). +column_description(listOf(genotype_symbols, [/, ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). +column_description(listOf(qualifier_ids, ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). +column_description(listOf(qualifier_names, ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). +column_description(listOf(symbol_synonym, ['|']), "Non-current symbol(s) associated with the object.", list, 'Symbol Synonyms'). +column_description(organism_abbreviation, "Abbreviation indicating the species of origin.", abbreviation, 'Organism'). +column_description(phenotype_id, "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). +column_description(phenotype_name, "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). +column_description(primary_FBid, "Primary FlyBase identifier for the object.", identifier, 'Object'). +column_description(reference, "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). + +column_names('allele_genetic_interactions', ['allele_symbol', 'allele_FBal#', 'interaction', 'FBrf#']). +column_names('fb_synonym', ['primary_FBid', 'organism_abbreviation', 'current_symbol', 'current_fullname', listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names('gene_genetic_interactions', [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names('gene_rpkm_matrix', ['gene_primary_id', 'gene_symbol', 'gene_fullname', 'gene_type', 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names('gene_rpkm_report', ['Release_ID', 'FBgn#', 'GeneSymbol', 'Parent_library_FBlc#', 'Parent_library_name', 'RNASource_FBlc#', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names('genotype_phenotype_data', [listOf('genotype_symbols', ['/', ' ']), listOf('genotype_FBids', ['/', ' ']), 'phenotype_name', 'phenotype_id', listOf('qualifier_names', ['|']), listOf('qualifier_ids', ['|']), 'reference']). +column_names('pmid_fbgn_uniprot', ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). + +file_location('allele_genetic_interactions', "path_to_file/allele_genetic_interactions_*.tsv"). +file_location('genotype_phenotype_data', "path_to_file/genotype_phenotype_data_*.tsv"). + +primary_column('allele_genetic_interactions', 'allele_FBal#'). +primary_column('fb_synonym', 'primary_FBid'). +primary_column('gene_genetic_interactions', 'Starting_gene_FBgn'). +primary_column('gene_rpkm_matrix', 'gene_primary_id'). +primary_column('gene_rpkm_report', 'FBgn#'). +primary_column('genotype_phenotype_data', 'genotype_FBids'). +primary_column('pmid_fbgn_uniprot', 'FBgn_id'). +primary_column('scRNA-Seq_gene_expression', 'Gene_ID'). +primary_column(allele_genetic_interactions, allele_FBal). +primary_column(dataset_metadata, 'Item_ID'). +primary_column(dmel_paralogs, 'Paralog_FBgn'). +primary_column(fb_synonym, primary_FBid). +primary_column(fbgn_exons2affy1_overlaps, 'FBgn'). +primary_column(fbgn_exons2affy2_overlaps, 'FBgn'). +primary_column(gene_genetic_interactions, 'Starting_gene_FBgn'). +primary_column(gene_rpkm_matrix, gene_primary_id). +primary_column(gene_rpkm_report, 'FBgn'). +primary_column(genotype_phenotype_data, genotype_FBids). +primary_column(pmid_fbgn_uniprot, 'FBgn_id'). + +too_generic(Var):- var(Var),!,fail. +too_generic(pub_id). +too_generic(X):- \+ symbolic_list_concat([_,_,_|_],'_',X). + + +fix_header_names(Fn,Header,GNames):- + maplist(fix_header_names(Header,Fn),Header,ArgTypes), + include( \=(''),ArgTypes,GNames). + + +%fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_','_id','_ID']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(_FL,_Fn,ID,Out):- number(ID),!,Out=ID. +fix_header_names(FL,Fn,listOf(ID),listOf(Out)):- fix_header_names(FL,Fn,ID,Out),!. +fix_header_names(FL,Fn,listOf(ID,Sep),listOf(Out,Sep)):- fix_header_names(FL,Fn,ID,Out),!. +fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(RF,MID,ID),!,fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,Out):- member(RF,['__',' ']),symbolic_list_concat(MIDL,RF,ID),MIDL\=[_],symbolic_list_concat(MIDL,'_',MID),!, + fix_header_names(FL,Fn,MID,Out). +fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RF,['(es)','(s)','ids']),symbolic_list_concat([Left,Right],RF,ID),symbolic_list_concat([Left,Right],'_',MID),!, + fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. +fix_header_names(FL,Fn,TT,listOf(AOut)):- + member(IDs=ID,['IDs'='ID']), + symbol_concat(Type,IDs,TT), + symbol_concat(Type,ID,MID), + fix_header_names(FL,Fn,MID,AOut),!. +fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RFS=RF,['_IDs'='_ID','IDs'='ID']), + symbolic_list_concat([Left,Right],RFS,ID), + symbolic_list_concat([Left,Right],RF,MID),!, + fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. + + +fix_header_names(_,_,Name,Name):- \+ too_generic(Name),!. +fix_header_names(_,_,Name,Name):- symbolic_list_concat([_,_|_],'_',Name),!. +%fix_header_names(_,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_column_',Out). +%fix_header_names(FieldList,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_',Out), \+ member(Out,FieldList). +fix_header_names(_,_,Name,Name). + + +pmt :-flybase_tables(FBT),for_all(member(T,FBT), ( '\\+'(flybase_cols(T,_)) -> format('~N~q.~n',[get_fbt(T)]);true)). +use_flybase_cols(Table,Columns):- + must_det_ll(( + maplist(fix_header_names(Columns,Table),Columns,ArgTypes), + assert(flybase_col_names(Table,Columns,ArgTypes)), + do_arity_2_names(Table,ArgTypes))). + +do_arity_2_names(Table,[ID|ArgTypes]):- + must_det_ll(( + symbol_concat('data_',Table,F), + length([ID|ArgTypes],Arity), + length(Args,Arity), + DataCall=..[F|Args], + do_arity_2_names_dc(Table,DataCall,2,ArgTypes))). + +do_arity_2_names_dc(Table,DataCall,N,[Nth|ArgTypes]):- + do_arity_2_names_dc1(Table,DataCall,N,Nth),!, + N2 is N+1, do_arity_2_names_dc(Table,DataCall,N2,ArgTypes). +do_arity_2_names_dc(_Table,_DataCall,_N,[]). + +do_arity_2_names_dc1(Table,DataCall,N,Nth):- + must_det_ll(( + arg(1,DataCall,Arg1Data), + arg(N,DataCall,Arg2Data), + make_arity_2_name(Table,Nth,Arity2), + Arg1=..[Table,Arg1Data], + clip_id(Nth,NthNoID), + (Nth==NthNoID -> Arg2=Arg2Data ; Arg2 =..[NthNoID,Arg2Data]), + Arity2Call=..[Arity2,Arg1,Arg2], + fbug((Arity2Call:-DataCall)), + fb_assert((Arity2Call:-DataCall)))). + +make_arity_2_name(Table,Nth,Arity2):- + clip_id(Nth,NthNoID), + (symbol_concat(Table,_,Nth) + -> Arity2 = Nth + ; symbolic_list_concat([Table,NthNoID],'_',Arity2)). + + +clip_id(Nth,ID):- (symbol_concat(ID,'_id',Nth)->true;Nth=ID),!. + + + + +setup_flybase_cols:- + for_all(flybase_cols(Table,Columns), + use_flybase_cols(Table,Columns)). + +%:- load_flybase("das_precomputed/allele_genetic_interactions_fb_2022_06.tsv"). + + + + +flybase_cols(allele_genetic_interactions,['##allele_symbol','allele_FBal#',interaction,'FBrf#']). + +flybase_cols(analysis,[ analysis_id,name,description,program,programversion,algorithm,sourcename,sourceversion,sourceuri,timeexecuted]). +flybase_cols(analysisfeature,[ analysisfeature_id,feature_id,analysis_id,rawscore,normscore,significance,identity]). +flybase_cols(analysisgrp,[ analysisgrp_id,rawscore,normscore,significance,identity,analysis_id,grp_id]). +flybase_cols(analysisgrpmember,[ analysisgrpmember_id,rawscore,normscore,significance,identity,analysis_id,grpmember_id]). +flybase_cols(analysisprop,[ analysisprop_id,analysis_id,type_id,value]). +flybase_cols(audit_chado,[ audit_transaction,transaction_timestamp,userid,audited_table,record_pkey,record_ukey_cols,record_ukey_vals,audited_cols,audited_vals]). + +flybase_cols(cell_line,[ cell_line_id,name,uniquename,organism_id,timeaccessioned,timelastmodified]). +flybase_cols(cell_line_loaderm,[ cell_line_loaderm_id,cell_line_id,loaderm_id,pub_id,rank]). +flybase_cols(cell_line_loadermprop,[ cell_line_loadermprop_id,cell_line_loaderm_id,type_id,value,rank]). +flybase_cols(cell_line_dbxref,[ cell_line_dbxref_id,cell_line_id,dbxref_id,is_current]). +flybase_cols(cell_line_feature,[ cell_line_feature_id,cell_line_id,feature_id,pub_id]). +flybase_cols(cell_line_library,[ cell_line_library_id,cell_line_id,library_id,pub_id]). +flybase_cols(cell_line_libraryprop,[ cell_line_libraryprop_id,cell_line_library_id,type_id,value,rank]). +flybase_cols(cell_line_relationship,[ cell_line_relationship_id,subject_id,object_id,type_id]). +flybase_cols(cell_line_strain,[ cell_line_strain_id,strain_id,cell_line_id,pub_id]). +flybase_cols(cell_line_strainprop,[ cell_line_strainprop_id,cell_line_strain_id,type_id,value,rank]). +flybase_cols(cell_line_synonym,[ cell_line_synonym_id,cell_line_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(cell_lineprop,[ cell_lineprop_id,cell_line_id,type_id,value,rank]). +flybase_cols(cell_lineprop_pub,[ cell_lineprop_pub_id,cell_lineprop_id,pub_id]). +flybase_cols(cell_line_pub,[ cell_line_pub_id,cell_line_id,pub_id]). +flybase_cols(contact,[ contact_id,description,name]). +flybase_cols(cv,[ cv_id,name,definition]). +flybase_cols(loaderm,[ loaderm_id,cv_id,definition,dbxref_id,is_obsolete,is_relationshiptype,name]). +flybase_cols(loaderm_dbxref,[ loaderm_dbxref_id,loaderm_id,dbxref_id,is_for_definition]). +flybase_cols(loaderm_relationship,[ loaderm_relationship_id,type_id,subject_id,object_id]). +flybase_cols(loadermpath,[ loadermpath_id,type_id,subject_id,object_id,cv_id,pathdistance]). +flybase_cols(loadermprop,[ loadermprop_id,loaderm_id,type_id,value,rank]). +flybase_cols(loadermsynonym,[ loadermsynonym_id,loaderm_id,name,type_id]). +flybase_cols(db,[ db_id,name,contact_id,description,urlprefix,url]). +flybase_cols(dbxref,[ dbxref_id,db_id,accession,version,description,url]). +flybase_cols(dbxrefprop,[ dbxrefprop_id,dbxref_id,type_id,value,rank]). +flybase_cols(eimage,[ eimage_id,eimage_data,eimage_type,image_uri]). +flybase_cols(environment,[ environment_id,uniquename,description]). +flybase_cols(environment_loaderm,[ environment_loaderm_id,environment_id,loaderm_id]). +flybase_cols(expression,[ expression_id,uniquename,md5checksum,description]). +flybase_cols(expression_loaderm,[ expression_loaderm_id,expression_id,loaderm_id,rank,loaderm_type_id]). +flybase_cols(expression_loadermprop,[ expression_loadermprop_id,expression_loaderm_id,type_id,value,rank]). +flybase_cols(expression_image,[ expression_image_id,expression_id,eimage_id]). +flybase_cols(expressionprop,[ expressionprop_id,expression_id,type_id,value,rank]). +flybase_cols(expression_pub,[ expression_pub_id,expression_id,pub_id]). +flybase_cols(feature,[ feature_id,dbxref_id,organism_id,name,uniquename,residues,seqlen,md5checksum,type_id,is_analysis,timeaccessioned,timelastmodified,is_obsolete]). +flybase_cols(feature_loaderm,[ feature_loaderm_id,feature_id,loaderm_id,pub_id,is_not]). +flybase_cols(feature_loaderm_dbxref,[ feature_loaderm_dbxref_id,feature_loaderm_id,dbxref_id]). +flybase_cols(feature_loadermprop,[ feature_loadermprop_id,feature_loaderm_id,type_id,value,rank]). +flybase_cols(feature_dbxref,[ feature_dbxref_id,feature_id,dbxref_id,is_current]). +flybase_cols(feature_expression,[ feature_expression_id,expression_id,feature_id,pub_id]). +flybase_cols(feature_expressionprop,[ feature_expressionprop_id,feature_expression_id,type_id,value,rank]). +flybase_cols(feature_genotype,[ feature_genotype_id,feature_id,genotype_id,chromosome_id,rank,cgroup,loaderm_id]). +flybase_cols(feature_grpmember,[ feature_grpmember_id,grpmember_id,feature_id]). +flybase_cols(feature_grpmember_pub,[ feature_grpmember_pub_id,pub_id,feature_grpmember_id]). +flybase_cols(feature_humanhealth_dbxref,[ feature_humanhealth_dbxref_id,humanhealth_dbxref_id,feature_id,pub_id]). +flybase_cols(feature_interaction,[ feature_interaction_id,feature_id,interaction_id,role_id,rank]). +flybase_cols(feature_interactionprop,[ feature_interactionprop_id,feature_interaction_id,type_id,value,rank]). +flybase_cols(feature_interaction_pub,[ feature_interaction_pub_id,feature_interaction_id,pub_id]). +flybase_cols(feature_phenotype,[ feature_phenotype_id,feature_id,phenotype_id]). +flybase_cols(feature_pubprop,[ feature_pubprop_id,feature_pub_id,type_id,value,rank]). +flybase_cols(feature_relationship,[ feature_relationship_id,subject_id,object_id,type_id,rank,value]). +flybase_cols(feature_relationshipprop,[ feature_relationshipprop_id,feature_relationship_id,type_id,value,rank]). +flybase_cols(feature_relationshipprop_pub,[ feature_relationshipprop_pub_id,feature_relationshipprop_id,pub_id]). +flybase_cols(feature_relationship_pub,[ feature_relationship_pub_id,feature_relationship_id,pub_id]). +flybase_cols(feature_synonym,[ feature_synonym_id,synonym_id,feature_id,pub_id,is_current,is_internal]). +flybase_cols(featureloc,[ featureloc_id,feature_id,srcfeature_id,fmin,is_fmin_partial,fmax,is_fmax_partial,strand,phase,residue_info,locgroup,rank]). +flybase_cols(featureloc_pub,[ featureloc_pub_id,featureloc_id,pub_id]). +flybase_cols(featuremap,[ featuremap_id,name,description,unittype_id]). +flybase_cols(featuremap_pub,[ featuremap_pub_id,featuremap_id,pub_id]). +flybase_cols(featurepos,[ featurepos_id,featuremap_id,feature_id,map_feature_id,mappos]). +flybase_cols(featureprop,[ featureprop_id,feature_id,type_id,value,rank]). +flybase_cols(featureprop_pub,[ featureprop_pub_id,featureprop_id,pub_id]). +flybase_cols(feature_pub,[ feature_pub_id,feature_id,pub_id]). +flybase_cols(featurerange,[ featurerange_id,featuremap_id,feature_id,leftstartf_id,leftendf_id,rightstartf_id,rightendf_id,rangestr]). +flybase_cols(genotype,[ genotype_id,uniquename,description,name,is_obsolete]). +flybase_cols(genotype_loaderm,[ genotype_loaderm_id,genotype_id,loaderm_id,pub_id,is_not,rank]). +flybase_cols(genotype_loadermprop,[ genotype_loadermprop_id,genotype_loaderm_id,type_id,value,rank]). +flybase_cols(genotype_dbxref,[ genotype_dbxref_id,genotype_id,dbxref_id,is_current]). +flybase_cols(genotype_synonym,[ genotype_synonym_id,genotype_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(genotypeprop,[ genotypeprop_id,genotype_id,type_id,value,rank,cvalue_id]). +flybase_cols(genotypeprop_pub,[ genotypeprop_pub_id,genotypeprop_id,pub_id]). +flybase_cols(genotype_pub,[ genotype_pub_id,genotype_id,pub_id]). +flybase_cols(grp,[ grp_id,name,uniquename,type_id,is_analysis,is_obsolete]). +flybase_cols(grp_loaderm,[ grp_loaderm_id,is_not,loaderm_id,grp_id,pub_id]). +flybase_cols(grp_dbxref,[ grp_dbxref_id,is_current,dbxref_id,grp_id]). +flybase_cols(grp_pubprop,[ grp_pubprop_id,value,rank,type_id,grp_pub_id]). +flybase_cols(grp_relationship,[ grp_relationship_id,value,rank,type_id,subject_id,object_id]). +flybase_cols(grp_relationshipprop,[ grp_relationshipprop_id,value,rank,type_id,grp_relationship_id]). +flybase_cols(grp_relationship_pub,[ grp_relationship_pub_id,pub_id,grp_relationship_id]). +flybase_cols(grp_synonym,[ grp_synonym_id,synonym_id,grp_id,pub_id,is_current,is_internal]). +flybase_cols(grpmember,[ grpmember_id,rank,type_id,grp_id]). +flybase_cols(grpmember_loaderm,[ grpmember_loaderm_id,is_not,loaderm_id,grpmember_id,pub_id]). +flybase_cols(grpmemberprop,[ grpmemberprop_id,value,rank,type_id,grpmember_id]). +flybase_cols(grpmemberprop_pub,[ grpmemberprop_pub_id,pub_id,grpmemberprop_id]). +flybase_cols(grpmember_pub,[ grpmember_pub_id,pub_id,grpmember_id]). +flybase_cols(grpprop,[ grpprop_id,value,rank,type_id,grp_id]). +flybase_cols(grpprop_pub,[ grpprop_pub_id,pub_id,grpprop_id]). +flybase_cols(grp_pub,[ grp_pub_id,pub_id,grp_id]). +flybase_cols(humanhealth,[ humanhealth_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). +flybase_cols(humanhealth_loaderm,[ humanhealth_loaderm_id,humanhealth_id,loaderm_id,pub_id]). +flybase_cols(humanhealth_loadermprop,[ humanhealth_loadermprop_id,humanhealth_loaderm_id,type_id,value,rank]). +flybase_cols(humanhealth_dbxref,[ humanhealth_dbxref_id,humanhealth_id,dbxref_id,is_current]). +flybase_cols(humanhealth_dbxrefprop,[ humanhealth_dbxrefprop_id,humanhealth_dbxref_id,type_id,value,rank]). +flybase_cols(humanhealth_dbxrefprop_pub,[ humanhealth_dbxrefprop_pub_id,humanhealth_dbxrefprop_id,pub_id]). +flybase_cols(humanhealth_feature,[ humanhealth_feature_id,humanhealth_id,feature_id,pub_id]). +flybase_cols(humanhealth_featureprop,[ humanhealth_featureprop_id,humanhealth_feature_id,type_id,value,rank]). +flybase_cols(humanhealth_phenotype,[ humanhealth_phenotype_id,humanhealth_id,phenotype_id,pub_id]). +flybase_cols(humanhealth_phenotypeprop,[ humanhealth_phenotypeprop_id,humanhealth_phenotype_id,type_id,value,rank]). +flybase_cols(humanhealth_pubprop,[ humanhealth_pubprop_id,value,rank,type_id,humanhealth_pub_id]). +flybase_cols(humanhealth_relationship,[ humanhealth_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(humanhealth_relationship_pub,[ humanhealth_relationship_pub_id,humanhealth_relationship_id,pub_id]). +flybase_cols(humanhealth_synonym,[ humanhealth_synonym_id,humanhealth_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(humanhealthprop,[ humanhealthprop_id,humanhealth_id,type_id,value,rank]). +flybase_cols(humanhealthprop_pub,[ humanhealthprop_pub_id,humanhealthprop_id,pub_id]). +flybase_cols(humanhealth_pub,[ humanhealth_pub_id,humanhealth_id,pub_id]). +flybase_cols(interaction,[ interaction_id,uniquename,type_id,description,is_obsolete]). +flybase_cols(interaction_cell_line,[ interaction_cell_line_id,cell_line_id,interaction_id,pub_id]). +flybase_cols(interaction_loaderm,[ interaction_loaderm_id,interaction_id,loaderm_id]). +flybase_cols(interaction_loadermprop,[ interaction_loadermprop_id,interaction_loaderm_id,type_id,value,rank]). +flybase_cols(interaction_expression,[ interaction_expression_id,expression_id,interaction_id,pub_id]). +flybase_cols(interaction_expressionprop,[ interaction_expressionprop_id,interaction_expression_id,type_id,value,rank]). +flybase_cols(interaction_group,[ interaction_group_id,uniquename,is_obsolete,description]). +flybase_cols(interaction_group_feature_interaction,[ interaction_group_feature_interaction_id,interaction_group_id,feature_interaction_id,rank,ftype]). +flybase_cols(interactionprop,[ interactionprop_id,interaction_id,type_id,value,rank]). +flybase_cols(interactionprop_pub,[ interactionprop_pub_id,interactionprop_id,pub_id]). +flybase_cols(interaction_pub,[ interaction_pub_id,interaction_id,pub_id]). +flybase_cols(library,[ library_id,organism_id,name,uniquename,type_id,is_obsolete,timeaccessioned,timelastmodified]). +flybase_cols(library_loaderm,[ library_loaderm_id,library_id,loaderm_id,pub_id]). +flybase_cols(library_loadermprop,[ library_loadermprop_id,library_loaderm_id,type_id,value,rank]). +flybase_cols(library_dbxref,[ library_dbxref_id,library_id,dbxref_id,is_current]). +flybase_cols(library_dbxrefprop,[ library_dbxrefprop_id,library_dbxref_id,type_id,value,rank]). +flybase_cols(library_expression,[ library_expression_id,expression_id,library_id,pub_id]). +flybase_cols(library_expressionprop,[ library_expressionprop_id,library_expression_id,type_id,value,rank]). +flybase_cols(library_feature,[ library_feature_id,library_id,feature_id]). +flybase_cols(library_featureprop,[ library_featureprop_id,library_feature_id,type_id,value,rank]). +flybase_cols(library_grpmember,[ library_grpmember_id,grpmember_id,library_id]). +flybase_cols(library_humanhealth,[ library_humanhealth_id,humanhealth_id,library_id,pub_id]). +flybase_cols(library_humanhealthprop,[ library_humanhealthprop_id,library_humanhealth_id,type_id,value,rank]). +flybase_cols(library_interaction,[ library_interaction_id,interaction_id,library_id,pub_id]). +flybase_cols(library_relationship,[ library_relationship_id,subject_id,object_id,type_id]). +flybase_cols(library_relationship_pub,[ library_relationship_pub_id,library_relationship_id,pub_id]). +flybase_cols(library_strain,[ library_strain_id,strain_id,library_id,pub_id]). +flybase_cols(library_strainprop,[ library_strainprop_id,library_strain_id,type_id,value,rank]). +flybase_cols(library_synonym,[ library_synonym_id,synonym_id,library_id,pub_id,is_current,is_internal]). +flybase_cols(libraryprop,[ libraryprop_id,library_id,type_id,value,rank]). +flybase_cols(libraryprop_pub,[ libraryprop_pub_id,libraryprop_id,pub_id]). +flybase_cols(library_pub,[ library_pub_id,library_id,pub_id]). +flybase_cols(lock,[ lock_id,username,locktype,lockname,lockrank,lockstatus,timeaccessioend,timelastmodified,chadoxmlfile,comment,task]). +flybase_cols(organism,[ organism_id,abbreviation,genus,species,common_name,comment]). +flybase_cols(organism_loaderm,[ organism_loaderm_id,organism_id,loaderm_id,rank,pub_id]). +flybase_cols(organism_loadermprop,[ organism_loadermprop_id,organism_loaderm_id,type_id,value,rank]). +flybase_cols(organism_dbxref,[ organism_dbxref_id,organism_id,dbxref_id,is_current]). +flybase_cols(organism_grpmember,[ organism_grpmember_id,grpmember_id,organism_id]). +flybase_cols(organism_library,[ organism_library_id,organism_id,library_id]). +flybase_cols(organismprop,[ organismprop_id,organism_id,type_id,value,rank]). +flybase_cols(organismprop_pub,[ organismprop_pub_id,organismprop_id,pub_id]). +flybase_cols(organism_pub,[ organism_pub_id,organism_id,pub_id]). +flybase_cols(phendesc,[ phendesc_id,genotype_id,environment_id,description,type_id,pub_id]). +flybase_cols(phenotype,[ phenotype_id,uniquename,observable_id,attr_id,value,cvalue_id,assay_id]). +flybase_cols(phenotype_comparison,[ phenotype_comparison_id,genotype1_id,environment1_id,genotype2_id,environment2_id,phenotype1_id,phenotype2_id,pub_id,organism_id]). +flybase_cols(phenotype_comparison_loaderm,[ phenotype_comparison_loaderm_id,phenotype_comparison_id,loaderm_id,rank]). +flybase_cols(phenotype_loaderm,[ phenotype_loaderm_id,phenotype_id,loaderm_id,rank]). +flybase_cols(phenstatement,[ phenstatement_id,genotype_id,environment_id,phenotype_id,type_id,pub_id]). +flybase_cols(project,[ project_id,name,description]). +flybase_cols(pub,[ pub_id,title,volumetitle,volume,series_name,issue,pyear,pages,miniref,type_id,is_obsolete,publisher,pubplace,uniquename]). +flybase_cols(pub_dbxref,[ pub_dbxref_id,pub_id,dbxref_id,is_current]). +flybase_cols(pub_relationship,[ pub_relationship_id,type_id,subject_id,object_id]). +flybase_cols(pubauthor,[ pubauthor_id,pub_id,rank,editor,surname,givennames,suffix]). +flybase_cols(pubprop,[ pubprop_id,pub_id,type_id,value,rank]). +flybase_cols(stock,[ stock_id,dbxref_id,organism_id,name,uniquename,description,type_id,is_obsolete]). +flybase_cols(stock_loaderm,[ stock_loaderm_id,stock_id,loaderm_id,pub_id]). +flybase_cols(stock_dbxref,[ stock_dbxref_id,stock_id,dbxref_id,is_current]). +flybase_cols(stock_genotype,[ stock_genotype_id,stock_id,genotype_id]). +flybase_cols(stock_relationship,[ stock_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(stock_relationship_pub,[ stock_relationship_pub_id,stock_relationship_id,pub_id]). +flybase_cols(stockcollection,[ stockcollection_id,type_id,contact_id,name,uniquename]). +flybase_cols(stockcollection_stock,[ stockcollection_stock_id,stockcollection_id,stock_id]). +flybase_cols(stockcollectionprop,[ stockcollectionprop_id,stockcollection_id,type_id,value,rank]). +flybase_cols(stockprop,[ stockprop_id,stock_id,type_id,value,rank]). +flybase_cols(stockprop_pub,[ stockprop_pub_id,stockprop_id,pub_id]). +flybase_cols(stock_pub,[ stock_pub_id,stock_id,pub_id]). +flybase_cols(strain,[ strain_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). +flybase_cols(strain_loaderm,[ strain_loaderm_id,strain_id,loaderm_id,pub_id]). +flybase_cols(strain_loadermprop,[ strain_loadermprop_id,strain_loaderm_id,type_id,value,rank]). +flybase_cols(strain_dbxref,[ strain_dbxref_id,strain_id,dbxref_id,is_current]). +flybase_cols(strain_feature,[ strain_feature_id,strain_id,feature_id,pub_id]). +flybase_cols(strain_featureprop,[ strain_featureprop_id,strain_feature_id,type_id,value,rank]). +flybase_cols(strain_phenotype,[ strain_phenotype_id,strain_id,phenotype_id,pub_id]). +flybase_cols(strain_phenotypeprop,[ strain_phenotypeprop_id,strain_phenotype_id,type_id,value,rank]). +flybase_cols(strain_relationship,[ strain_relationship_id,subject_id,object_id,type_id,value,rank]). +flybase_cols(strain_relationship_pub,[ strain_relationship_pub_id,strain_relationship_id,pub_id]). +flybase_cols(strain_synonym,[ strain_synonym_id,strain_id,synonym_id,pub_id,is_current,is_internal]). +flybase_cols(strainprop,[ strainprop_id,strain_id,type_id,value,rank]). +flybase_cols(strainprop_pub,[ strainprop_pub_id,strainprop_id,pub_id]). +flybase_cols(strain_pub,[ strain_pub_id,strain_id,pub_id]). +flybase_cols(synonym,[ synonym_id,name,type_id,synonym_sgml]). +flybase_cols(tableinfo,[ tableinfo_id,name,primary_key_column,is_view,view_on_table_id,superclass_table_id,is_updateable,modification_date]). +flybase_cols(update_track,[ update_track_id,release,fbid,time_update,author,statement,comment,annotation_id]). + + +table_columns(T,List):- table_columns_tt(TT,List), eigther_contains(T,TT),!. + +table_columns_tt(TT,List):- column_names(TT,List). +table_columns_tt(TT,List):- flybase_cols(TT,List). +table_columns_tt(TT,List):- t_h_n(TT,_,List). + +eigther_contains(TT,T):- TT=T,!. +eigther_contains(T,TT):- symbol_contains(T,TT),!. +eigther_contains(TT,T):- symbol_contains(T,TT),!. + + + + + +column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). +column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). +column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). +column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). +column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). +column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). +column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). +% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference +column_names(automated_gene_summaries, [primary_FBgn, summary_text]). +column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). +column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). +column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). +column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). +column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). +column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). +column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). +column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). +column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). +column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). +column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). +column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). +column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). +column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). +column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). +column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). +column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). +column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). +column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). +column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). +column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). +column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). +column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). +column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). +column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). +column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). + +column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). +column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). +column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). +column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). +column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). +column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). + +column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). +column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). +column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). + +flybase_tables([ +analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, +cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, +cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, +loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, +expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, +feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, +feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, +feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, +feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, +featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, +genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, +grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, +grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, +humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, +humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, +humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, +interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, +interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, +library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, +library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, + libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, + organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, + phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, + sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, + stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, + strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, +strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). + + + +table_n_type(allele_genetic_interactions, 1, allele_symbol, _). +table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). +table_n_type(allele_genetic_interactions, 3, interaction, _). +table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). +table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). +table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). +table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). +table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). +table_n_type(disease_model_annotations, 5, 'DO', _). +table_n_type(disease_model_annotations, 6, 'DO_term', _). +table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). +table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). +table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). +table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). +table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). +table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). +table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). +table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). +table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). +table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). +table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). +table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). +table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). +table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). +table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). +table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). +table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). +table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). +table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). +table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). +table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). +table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). +table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). +table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). +table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). +table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). +table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). +table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). +table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). +table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). +table_n_type(gene_map_table, 1, organism_abbreviation, _). +table_n_type(gene_map_table, 2, current_symbol, _). +table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). +table_n_type(gene_map_table, 4, recombination_loc, _). +table_n_type(gene_map_table, 5, cytogenetic_loc, _). +table_n_type(gene_map_table, 6, sequence_loc, _). +table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). +table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). +table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). +table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). +table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). +table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). +table_n_type(physical_interactions_mitab, 9, 'Publication', _). +table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). +table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). +table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). +table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). +table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). +table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). +table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). +table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). +table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). +table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). +table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). +table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). +table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). +table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). +table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). +table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). +table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). +table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). +table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). +table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). +table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). +table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). +table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). +table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). +table_n_type(physical_interactions_mitab, 36, 'Negative', _). +table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). +table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). +table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). +table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). +table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). +table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). +table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). +table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). +table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). +table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). +table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). +table_n_type(cDNA_clone, 2, organism_abbreviation, _). +table_n_type(cDNA_clone, 3, clone_name, _). +table_n_type(cDNA_clone, 4, dataset_metadata_name, _). +table_n_type(cDNA_clone, 5, cDNA_accession, _). +table_n_type(cDNA_clone, 6, 'EST_accession', _). +table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). +table_n_type(genomic_clone, 2, organism_abbreviation, _). +table_n_type(genomic_clone, 3, clone_name, _). +table_n_type(genomic_clone, 4, accession, _). +/* +table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(fbgn_uniprot, 2, gene_symbol, _). +table_n_type(fbgn_uniprot, 3, 'CG', _). +table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). +table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). +table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). +table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +*/ +table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). +table_n_type(automated_gene_summaries, 2, summary_text, _). + +table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). +table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). +table_n_type(best_gene_summary, 3, 'Summary_Source', _). +table_n_type(best_gene_summary, 4, 'Summary', _). +table_n_type('Dmel_enzyme', 1, gene_group_id, _). +table_n_type('Dmel_enzyme', 2, gene_group_name, _). +table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). +table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). +table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). +table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). +table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). +table_n_type('Dmel_enzyme', 8, gene_symbol, _). +table_n_type('Dmel_enzyme', 9, gene_name, _). +table_n_type('Dmel_enzyme', 10, gene_EC_number, _). +table_n_type('Dmel_enzyme', 11, gene_EC_name, _). +table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). +table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). +table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). +table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). +table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). +table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). +table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). +table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). +table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). +table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). +table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). +table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). +table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). +table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). +table_n_type(fbgn_gleanr, 2, gene_symbol, _). +table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_gleanr, 4, 'GLEANR', _). +/* +table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). +table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). +table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). +table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). +table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). +table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). +table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). +table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). +*/ +table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). +table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). +table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). +table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). +table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). +table_n_type(gene_group, 1, 'FB_group', 'FBgg'). +table_n_type(gene_group, 2, 'FB_group_symbol', _). +table_n_type(gene_group, 3, 'FB_group_name', _). +table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). +table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). +table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). +table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). +table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). +table_n_type(gene_rpkm_matrix, 4, gene_type, _). +table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). +table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). +table_n_type(gene_rpkm_report, 1, 'Release_ID', _). +table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). +table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). +table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). +table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). +table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). +table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). +table_n_type(gene_rpkm_report, 9, 'Bin_value', _). +table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). +table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). +table_n_type(gene_rpkm_report, 12, 'Count_used', _). +table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). +table_n_type(gene_snapshots, 2, 'GeneSymbol', _). +table_n_type(gene_snapshots, 3, 'GeneName', _). +table_n_type(gene_snapshots, 4, datestamp, _). +table_n_type(gene_snapshots, 5, gene_snapshot_text, _). +table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). +table_n_type(pathway_group, 2, 'FB_group_symbol', _). +table_n_type(pathway_group, 3, 'FB_group_name', _). +table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). +table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). +table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). +table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). +table_n_type(insertion_mapping, 1, insertion_symbol, _). +table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). +table_n_type(insertion_mapping, 3, genomic_location, _). +table_n_type(insertion_mapping, 4, range, _). +table_n_type(insertion_mapping, 5, orientation, _). +table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). +table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). +table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). +table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). +table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). +table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). +table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). +table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). +table_n_type(dataset_metadata, 3, 'Item_ID', _). +table_n_type(dataset_metadata, 4, 'Item_Name', _). +table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). +table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). +table_n_type(dmel_paralogs, 4, 'Location', _). +table_n_type(dmel_paralogs, 5, 'Strand', _). +table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). +table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). +table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). +table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). +table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). +table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). +table_n_type(entity_publication, 1, entity_id, _). +table_n_type(entity_publication, 2, entity_name, _). +table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). +table_n_type(entity_publication, 4, 'PubMed', _). +table_n_type(organism_list, 1, genus, _). +table_n_type(organism_list, 2, species, _). +table_n_type(organism_list, 3, abbreviation, _). +table_n_type(organism_list, 4, common_name, _). +table_n_type(organism_list, 5, 'NCBI_taxon', _). +table_n_type(organism_list, 6, 'drosophilid?', _). +table_n_type(stocks, 1, stock_id, 'FBst'). +table_n_type(stocks, 2, dbxref_id, _). +table_n_type(stocks, 3, organism_id, _). +table_n_type(stocks, 4, name, _). +table_n_type(stocks, 5, uniquename, _). +table_n_type(stocks, 6, description, _). +table_n_type(stocks, 7, type_id, _). +table_n_type(stocks, 8, is_obsolete, _). +table_n_type(synonym, 1, primary_FBid, 'FBgn'). +table_n_type(synonym, 2, organism_abbreviation, _). +table_n_type(synonym, 3, current_symbol, _). +table_n_type(synonym, 4, current_fullname, _). +table_n_type(synonym, 5, fullname_synonym, _). +table_n_type(synonym, 6, symbol_synonym, _). + + +guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). + +:- dynamic numeric_value_p_n/3. +:- module_transparent numeric_value_p_n/3. + +numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). +numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). +numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). +numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). +numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). +numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). +numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). +numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). +numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). +numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). +numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). +numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). +numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). +numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). +numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). +numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). +numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). +numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). +numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). +numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). +numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). +numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). +numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). +numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). +numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). +numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). +numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). +numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). +numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). +numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). +numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). +numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). +numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). +numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). +numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). +numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). +numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). +numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). +numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). +numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). +numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). +numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). +numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). +numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). +numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). +numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). +numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). +numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). +numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). +numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). +numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). +numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). +numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). +numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). +numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). +numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). +numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). +numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). +numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). +numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). +numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). +numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). +numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). +numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). +numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). +numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). +numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). +numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). +numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). +numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). +numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). +numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). +numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). +numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). +numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). +numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). +numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). +numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). +numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). +numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). +numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). +numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). +numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). +numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). +numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). +numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). +numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). +numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). +numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). +numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). +numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). +numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). +numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). +numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). +numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). +numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). +numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). +numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). +numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). +numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). +numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). +numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). +numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). +numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). +numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). +numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). +numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). +numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). +numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). +numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). +numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). +numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). +numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). +numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). +numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). +numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). +numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). +numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). +numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). +numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). +numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). +numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). +numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). +numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). +numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). +numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). +numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). +numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). +numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). +numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). +numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). +numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). +numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). +numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). +numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). +numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). +numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). +numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). +numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). +numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). +numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). +numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). +numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). +numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). +numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). +numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). +numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). +numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). +numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). +numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). +numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). +numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). +numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). +numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). +numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). +numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). +numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). +numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). +numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). +numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). +numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). +numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). +numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). +numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). +numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). +numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). +numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). +numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). +numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). +numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). +numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). +numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). +numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). +numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). +numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). +numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). +numeric_value_p_n(gene_snapshots, 4, datestamp). +numeric_value_p_n(insertion_mapping, 5, orientation). +numeric_value_p_n(dmel_paralogs, 5, 'Strand'). +numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). +numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). +numeric_value_p_n(entity_publication, 4, 'PubMed'). +numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). + + +ncRNA_genes_fb_scheme( +' +{ + "$schema": "http://json-schema.org/draft-04/schema#", + "title": "RNAcentral ncRNA object", + "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", + "id": "ncrna.json#", + "type": "object", + "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], + "additionalProperties": false, + "properties": { + "primaryId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." + }, + "taxonId": { + "$ref" : "global-id.json#/properties/globalId", + "description" : "The NCBI taxonId for the species of the gene entity." + }, + "soTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." + }, + "ecoTermId": { + "$ref" : "global-id.json#/properties/globalId", + "description": "The ECO Term that represents the evidence for this sequence having the given SO term." + }, + "sequence": { + "$ref": "sequence.json#properties/sequence", + "description": "The DNA sequence of this entry." + }, + "name": { + "type": "string", + "description": "The name of this sequence." + }, + "description": { + "type": "string", + "description": "An informative human readable description. If not provided then it will be generated using the name and species information." + }, + "symbol": { + "type": "string", + "description": "The symbol for this ncRNA" + }, + "symbolSynonyms": { + "type": "array", + "items": { + "type": "string" + }, + "uniqueItems": true, + "description": "A list of other symbols for the ncRNA" + }, + "version": { + "description": "The version of this sequence, if any" + }, + "gene": { + "$ref": "gene.json#" + }, + "crossReferenceIds": { + "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", + "type": "array", + "items": { + "$ref" : "global-id.json#/properties/globalId" + }, + "uniqueItems": true + }, + "genomeLocations": { + "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", + "type": "array", + "items": { + "$ref" : "location.json#" + }, + "uniqueItems": true + }, + "url": { + "type": "string", + "format": "uri", + "description": "URL to the page for this entry in the database" + }, + "externalUrl": { + "type": "string", + "format": "uri", + "description": "URL to a synopsis outside the database, like wikipedia." + }, + "secondaryStructure": { + "description": "The secondary structure in dot-bracket notation for this sequence", + "$ref": "secondary-structure.json#/properties/dot_bracket" + }, + "publications": { + "description": "List of references to associate with this sequence.", + "type": "array", + "items": { + "anyOf": [ + { "$ref": "publications.json#/properties/pubMedId" }, + { "$ref": "publications.json#/properties/doi" } + ] + }, + "uniqueItems": true + }, + "localization": { + "description": "Name of the organelle or plasmid this sequence is found in", + "enum": [ + "mitochondria", + "plastid", + "chloroplast", + "plasmid" + ] + }, + "sequenceFeatures": { + "anticodon": { + "description": "Information about the anticodon", + "$ref": "anticodon.json#" + }, + "modifications": { + "description": "List of the modifications in this sequence", + "type": "array", + "items": { + "$ref": "modification.json#" + }, + "uniqueItems": true + } + }, + "sourceModel": { + "description": "Information about the model used to find this sequence", + "$ref" : "global-id.json#/properties/globalId" + }, + "product": { + "description": "The name of the product, this should be more specific than the name of the SO term that was provided", + "type": "string" + }, + "additionalAnnotations": { + "isoType": { + "description": "The isoType of this tRNA", + "enum": [ + "Ala", + "Cys", + "Asp", + "Glu", + "Phe", + "Gly", + "His", + "Ile", + "Lys", + "Leu", + "iMet", + "Met", + "Asn", + "Pro", + "Gln", + "Arg", + "Ser", + "Thr", + "Val", + "Trp", + "Tyr" + ] + } + }, + "relatedSequences": { + "description": "Information about related sequences, like precursors or targets", + "type": "array", + "items": { + "$ref": "related-sequence.json#" + }, + "uniqueItems": true + }, + "inferredPhylogeny": { + "description": "A phylogeny that has been inferred for this sequence", + "$ref": "inferred-phylogeny.json#" + } + } +}'). + + + +ucn(allele_genetic_interactions,[]). +ucn(dataset_metadata,[]). +ucn(disease_model_annotations,[]). +ucn('Dmel_enzyme',[]). +ucn(dmel_gene_sequence_ontology_annotations,[]). +ucn(dmel_human_orthologs_disease,[]). +ucn(dmel_paralogs,[]). +ucn(entity_publication,[]). +ucn(fbgn_gleanr,[]). +ucn(fbgn_NAseq_Uniprot,[]). +ucn(fbgn_uniprot,[]). +ucn(gene_functional_complementation,[]). +ucn(gene_genetic_interactions,[]). +ucn(gene_group,[]). +ucn(gene_groups_HGNC,[]). +ucn(genotype_phenotype,[]). +ucn(insertion_mapping,[]). +ucn(organism_list,[]). +ucn(pathway_group,[]). +ucn(pmid_fbgn_uniprot,[]). +ucn('scRNA-Seq_gene_expression',[]). + +ucn(dmel_unique_protein_isoforms, 3). % ,a-PA,)) +ucn(best_gene_summary, 1). % ,FBgn0031081,) (2 ,Nep3,)) +ucn(cDNA_clone, 1). % ,FBcl0000001,) (3 ,UUGC0315,)) +ucn(fb_synonym, 1). % ,FBal0000001,)) +ucn(fbal_to_fbgn, 1). % ,FBal0137236,)) +ucn(fbgn_annotation_ID.tsv, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) +ucn(fbgn_annotation_ID, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) +ucn(fbgn_fbtr_fbpp_expanded, 8). % ,FBtr0081624,) (9 ,7SLRNA:CR32864-RA,)) +ucn(fbgn_fbtr_fbpp, 2). % ,FBtr0081624,)) +ucn(fbrf_pmid_pmcid_doi, 1). % ,FBrf0026179,) (2 ,37280885,)) +ucn(gene_map_table, 2). % ,snRNA:4.5S,) (3 ,FBgn0000001,)) +ucn(gene_rpkm_matrix, 1). % ,FBgn0031081,) (2 ,Nep3,)) +ucn(gene_rpkm_report,[]). +ucn(gene_snapshots, 1). % ,FBgn0052532,) (2 ,CG32532,)) +ucn('genome-cyto-seq', 1). % ,21B2,) (2 ,98620,) (3 ,134010,)) +ucn('cyto-genetic-seq', 1). % ,1A,)) +ucn(genomic_clone, 1). % ,FBcl0297251,) (3 ,BACR13J02,)) +ucn(stocks ,1). % ,FBst,)) +ucn(physical_interactions_mitab, 14). %,flybase:FBrf0218395-7641.DPiM,)) + + +list_column_names:- + for_all((column_names(T,CNs),once((length(CNs,Len),Len>=2,fb_pred_nr(T,Len)))), + (print(column_names(T,CNs)),nl)). + + +%:- ensure_loaded(read_obo). + +show_cmds:- prolog_load_context(source,This),for_all((source_file(P0,This),functor(P0,F,0)),writeln(add_history1(F))). +%add_history1(setup_flybase_cols) +%add_history1(pmt) +ah:- add_history1(fb_stats), + add_history1(mine_overlaps), + add_history1(load_flybase), + add_history(fb_stats), + add_history(mine_overlaps), + add_history(try_overlaps), + add_history(load_flybase). +%:- ah,ah,ah. + +%:- initialization(load_flybase). + + + + + +fb_pred('allele_genetic_interactions',4). +fb_pred('automated_gene_summaries',2). +fb_pred('automated_gene_summaries',3). +fb_pred('best_gene_summary',4). +fb_pred('cDNA_clone',6). +fb_pred('cDNA_clone_data',5). +fb_pred('cDNA_clone_data',6). +fb_pred('cyto_genetic_seq',4). +fb_pred('cyto-genetic-seq',4). +fb_pred('dataset_metadata',4). +fb_pred('directory',2). +fb_pred('disease_model_annotations',12). +fb_pred('disease_model_annotations',9). +fb_pred('Dmel_enzyme',11). +fb_pred('Dmel_enzyme_data',11). +fb_pred('Dmel_enzyme_data',7). +fb_pred('dmel_gene_sequence_ontology_annotations',4). +fb_pred('dmel_human_orthologs_disease',8). +fb_pred('dmel_paralogs',11). +fb_pred('dmel_unique_protein_isoforms',4). +fb_pred('entity_publication',3). +fb_pred('entity_publication',4). +fb_pred('fb_synonym',4). +fb_pred('fb_synonym',6). +fb_pred('fbal_to_fbgn',4). +fb_pred('fbgn_annotation_ID',4). +fb_pred('fbgn_annotation_ID',6). +fb_pred('fbgn_exons2affy1_overlaps',2). +fb_pred('fbgn_exons2affy2_overlaps',2). +fb_pred('fbgn_fbtr_fbpp',2). +fb_pred('fbgn_fbtr_fbpp',3). +fb_pred('fbgn_fbtr_fbpp_expanded',11). +fb_pred('fbgn_fbtr_fbpp_expanded',9). +fb_pred('fbgn_gleanr',4). +fb_pred('fbgn_NAseq_Uniprot',4). +fb_pred('fbgn_NAseq_Uniprot',9). +fb_pred('fbgn_uniprot',4). +fb_pred('fbrf_pmid_pmcid_doi',2). +fb_pred('fbrf_pmid_pmcid_doi',6). +fb_pred('fbrf_pmid_pmcid_doi',7). +fb_pred('gene_functional_complementation',5). +fb_pred('gene_genetic_interactions',6). +fb_pred('gene_group',7). +fb_pred('gene_group_data',2). +fb_pred('gene_group_data',7). +fb_pred('gene_groups_HGNC',2). +fb_pred('gene_groups_HGNC',3). +fb_pred('gene_groups_HGNC',4). +fb_pred('gene_map_table',5). +fb_pred('gene_map_table',6). +fb_pred('gene_rpkm_matrix',170). +fb_pred('gene_rpkm_report',12). +fb_pred('gene_snapshots',5). +fb_pred('genome_cyto_seq',3). +fb_pred('genome-cyto-seq',3). +fb_pred('genomic_clone',4). +fb_pred('genomic_clone_data',4). +fb_pred('genotype_phenotype',7). +fb_pred('genotype_phenotype_data',5). +fb_pred('genotype_phenotype_data',7). +fb_pred('gp_information',10). +fb_pred('gp_information',8). +fb_pred('id_type',2). +fb_pred('insertion_mapping',4). +fb_pred('insertion_mapping',7). +fb_pred('obo-adjacent-to',3). +fb_pred('obo-alt-id',2). +fb_pred('obo-arity',2). +fb_pred('obo-attached-to',3). +fb_pred('obo-attached-to-part-of',3). +fb_pred('obo-auto-generated-by',2). +fb_pred('obo-basename',2). +fb_pred('obo-broadMatch',2). +fb_pred('obo-charge',2). +fb_pred('obo-ChEBI-has-part',2). +fb_pred('obo-ChEBI-has-role',2). +fb_pred('obo-CL-capable-of',2). +fb_pred('obo-CL-capable-of-part-of',2). +fb_pred('obo-CL-has-part',2). +fb_pred('obo-closeMatch',2). +fb_pred('obo-comment',2). +fb_pred('obo-composed-primarily-of',3). +fb_pred('obo-conditionality',3). +fb_pred('obo-connected-to',3). +fb_pred('obo-consider',2). +fb_pred('obo-contains',3). +fb_pred('obo-continuous-with',3). +fb_pred('obo-created-by',2). +fb_pred('obo-creation-date',2). +fb_pred('obo-data-version',2). +fb_pred('obo-date',2). +fb_pred('obo-def',3). +fb_pred('obo-def',4). +fb_pred('obo-default-namespace',2). +fb_pred('obo-derives-from',3). +fb_pred('obo-develops-directly-from',3). +fb_pred('obo-develops-from',3). +fb_pred('obo-develops-from-part-of',3). +fb_pred('obo-develops-into',3). +fb_pred('obo-directory',2). +fb_pred('obo-disjoint-from',3). +fb_pred('obo-electrically-synapsed-to',3). +fb_pred('obo-exactMatch',2). +fb_pred('obo-fasciculates-with',3). +fb_pred('obo-FBcv-namespace',2). +fb_pred('obo-format-version',2). +fb_pred('obo-formula',2). +fb_pred('obo-GO-capable-of',2). +fb_pred('obo-GO-capable-of-part-of',2). +fb_pred('obo-GO-directly-negatively-regulates',2). +fb_pred('obo-GO-directly-positively-regulates',2). +fb_pred('obo-GO-directly-regulates',2). +fb_pred('obo-GO-has-part',2). +fb_pred('obo-GO-has-participant',2). +fb_pred('obo-GO-negatively-regulates',2). +fb_pred('obo-GO-occurs-in',2). +fb_pred('obo-GO-positively-regulates',2). +fb_pred('obo-GO-regulates',2). +fb_pred('obo-GO-results-in-formation-of',2). +fb_pred('obo-GO-results-in-growth-of',2). +fb_pred('obo-guided-by',3). +fb_pred('obo-has-definition',2). +fb_pred('obo-has-fasciculating-neuron-projection',3). +fb_pred('obo-has-functional-parent',2). +fb_pred('obo-has-name',2). +fb_pred('obo-has-origin',3). +fb_pred('obo-has-parent-hydride',2). +fb_pred('obo-has-part',2). +fb_pred('obo-has-part',3). +fb_pred('obo-has-quality',3). +fb_pred('obo-has-role',2). +fb_pred('obo-has-sensory-dendrite-in',3). +fb_pred('obo-has-soma-location',3). +fb_pred('obo-has-synaptic-IO-in',3). +fb_pred('obo-has-synaptic-IO-throughout',3). +fb_pred('obo-holds-over-chain',2). +fb_pred('obo-id-type',2). +fb_pred('obo-immediately-preceded-by',3). +fb_pred('obo-inchi',2). +fb_pred('obo-inchikey',2). +fb_pred('obo-Inheritance',2). +fb_pred('obo-innervated-by',3). +fb_pred('obo-innervates',3). +fb_pred('obo-intersection-of',4). +fb_pred('obo-inverse-of',2). +fb_pred('obo-inverse-of',3). +fb_pred('obo-is-a',2). +fb_pred('obo-is-class-level',2). +fb_pred('obo-is-conjugate-acid-of',2). +fb_pred('obo-is-conjugate-base-of',2). +fb_pred('obo-is-cyclic',2). +fb_pred('obo-is-enantiomer-of',2). +fb_pred('obo-is-functional',2). +fb_pred('obo-is-inverse-functional',2). +fb_pred('obo-is-metadata-tag',2). +fb_pred('obo-is-obsolete',2). +fb_pred('obo-is-substituent-group-from',2). +fb_pred('obo-is-symmetric',2). +fb_pred('obo-is-tautomer-of',2). +fb_pred('obo-is-transitive',2). +fb_pred('obo-mass',2). +fb_pred('obo-member-of',3). +fb_pred('obo-monoisotopicmass',2). +fb_pred('obo-name',2). +fb_pred('obo-namespace',2). +fb_pred('obo-namespace-id-rule',2). +fb_pred('obo-narrowMatch',2). +fb_pred('obo-negatively-regulates',3). +fb_pred('obo-non-functional-homolog-of',3). +fb_pred('obo-OBI:9991118',2). +fb_pred('obo-ontology',2). +fb_pred('obo-overlaps',3). +fb_pred('obo-owl:versionInfo',2). +fb_pred('obo-part-of',3). +fb_pred('obo-pathname',2). +fb_pred('obo-positively-regulates',3). +fb_pred('obo-property-value',2). +fb_pred('obo-property-value',3). +fb_pred('obo-receives-input-from',3). +fb_pred('obo-receives-synaptic-input-from-neuron',3). +fb_pred('obo-receives-synaptic-input-in-region',3). +fb_pred('obo-receives-synaptic-input-throughout',3). +fb_pred('obo-regulates',3). +fb_pred('obo-relatedMatch',2). +fb_pred('obo-remark',2). +fb_pred('obo-replaced-by',2). +fb_pred('obo-RO',4). +fb_pred('obo-saved-by',2). +fb_pred('obo-sends-synaptic-output-throughout',3). +fb_pred('obo-sends-synaptic-output-to-cell',3). +fb_pred('obo-sends-synaptic-output-to-region',3). +fb_pred('obo-smiles',2). +fb_pred('obo-subset',2). +fb_pred('obo-subsetdef',3). +fb_pred('obo-substage-of',3). +fb_pred('obo-synapsed-via-type-Ib-bouton-to',3). +fb_pred('obo-synapsed-via-type-II-bouton-to',3). +fb_pred('obo-synapsed-via-type-III-bouton-to',3). +fb_pred('obo-synapsed-via-type-Is-bouton-to',3). +fb_pred('obo-synonym',3). +fb_pred('obo-synonym',4). +fb_pred('obo-synonym',5). +fb_pred('obo-synonymtypedef',3). +fb_pred('obo-synonymtypedef',4). +fb_pred('obo-transcribed-from',3). +fb_pred('obo-transcribed-to',3). +fb_pred('obo-transitive-over',3). +fb_pred('obo-variant-of',3). +fb_pred('obo-xref',2). +fb_pred('obo-xref',3). +fb_pred('obo-xref',4). +fb_pred('obo-xref-analog',2). +fb_pred('organism_list',2). +fb_pred('organism_list',6). +fb_pred('pathname',2). +fb_pred('pathway_group',7). +fb_pred('pathway_group_data',2). +fb_pred('pathway_group_data',7). +fb_pred('physical_interactions_mitab',42). +fb_pred('pmid_fbgn_uniprot',5). +fb_pred('stocks',7). +fb_pred('stocks_FB2023_05',7). +fb_pred('synonym',6). +fb_pred('transposon_sequence_set',10). +fb_pred('transposon_sequence_set',11). +fb_pred('transposon_sequence_set',12). +fb_pred('transposon_sequence_set',13). +fb_pred('transposon_sequence_set',14). +fb_pred('transposon_sequence_set',15). +fb_pred('transposon_sequence_set',17). +fb_pred('transposon_sequence_set',18). +fb_pred('transposon_sequence_set',19). +fb_pred('transposon_sequence_set',20). +fb_pred('transposon_sequence_set',21). +fb_pred('transposon_sequence_set',22). +fb_pred('transposon_sequence_set',23). +fb_pred('transposon_sequence_set',25). +fb_pred('transposon_sequence_set',26). +fb_pred('transposon_sequence_set',27). +fb_pred('transposon_sequence_set',28). +fb_pred('transposon_sequence_set',29). +fb_pred('transposon_sequence_set',3). +fb_pred('transposon_sequence_set',30). +fb_pred('transposon_sequence_set',31). +fb_pred('transposon_sequence_set',32). +fb_pred('transposon_sequence_set',33). +fb_pred('transposon_sequence_set',34). +fb_pred('transposon_sequence_set',35). +fb_pred('transposon_sequence_set',36). +fb_pred('transposon_sequence_set',37). +fb_pred('transposon_sequence_set',38). +fb_pred('transposon_sequence_set',4). +fb_pred('transposon_sequence_set',40). +fb_pred('transposon_sequence_set',41). +fb_pred('transposon_sequence_set',42). +fb_pred('transposon_sequence_set',44). +fb_pred('transposon_sequence_set',45). +fb_pred('transposon_sequence_set',46). +fb_pred('transposon_sequence_set',47). +fb_pred('transposon_sequence_set',48). +fb_pred('transposon_sequence_set',49). +fb_pred('transposon_sequence_set',5). +fb_pred('transposon_sequence_set',50). +fb_pred('transposon_sequence_set',51). +fb_pred('transposon_sequence_set',52). +fb_pred('transposon_sequence_set',53). +fb_pred('transposon_sequence_set',54). +fb_pred('transposon_sequence_set',55). +fb_pred('transposon_sequence_set',56). +fb_pred('transposon_sequence_set',57). +fb_pred('transposon_sequence_set',58). +fb_pred('transposon_sequence_set',59). +fb_pred('transposon_sequence_set',60). +fb_pred('transposon_sequence_set',61). +fb_pred('transposon_sequence_set',62). +fb_pred('transposon_sequence_set',7). +fb_pred('transposon_sequence_set',8). +fb_pred('transposon_sequence_set',9). +% ============== +% METTA COMPILER +% ============== +%:- ensure_loaded(metta_compiler). +:- ensure_loaded(metta_interp). +%:- ensure_loaded(metta_python). + + + + +if_m2(G):- once(G). + +datalog_to_termlog(File):- atom_contains(File,'*'),expand_file_name(File,List),!,maplist(datalog_to_termlog,List). +datalog_to_termlog(File):- + nb_setval(src_indents,'False'), + atom_concat(File,'2',File2), + fbug(datalog_to_termlog(File)), + if_m2(atom_concat(File,'.metta',M)), + setup_call_cleanup((open(File,read,In), open(File2,write,Out), if_m2(open(M,write,OutM))), + (repeat, + read_term(In,Term,[]), + (Term==end_of_file -> ! ; (process_datalog(Out,OutM,Term),fail))), + ((close(In),close(Out),if_m2(close(OutM)),listing(fb_pred/2)))). + + +process_datalog(Out,OutM,Term):- + Term=..[F|Args], + process_datalog(Out,OutM,F,Args). + + +process_datalog(Out,OutM,F,Args):- + must_det_ll((maplist(better_arg,Args,ArgsL), + Src=[F|ArgsL],OBO=..Src, + length(ArgsL,N), + assert_if_new(fb_pred(F,N)), + write_canonical(Out,OBO),!,writeln(Out,'.'), + if_m2((with_output_to(OutM,write_srcH(Src)))))). + + + % Split a string or atom by a specified delimiter. +split_by_delimiter(Input, Delimiter, Parts) :- + atomic_list_concat(Parts, Delimiter, Input), + Parts = [_,_|_]. % Ensure that there's more than one part. + +always_delistify(A,A):- \+ compound(A),!. +always_delistify(s(A,M,E),s(A,MM,E)):- !, always_delistify(M,MM). +always_delistify(A,A):- \+ is_list(A),!. +always_delistify([A],A):-!. +always_delistify(A,A). + +better_arg(S,A):- string(S),atom_string(A,S),!. +%better_arg1(A,B):- fix_concept(A,B),!. +better_arg(A,A):- !. + +better_arg(A,B):- better_arg1(A,AA),always_delistify(AA,B). +% Main predicate to try different delimiters. +better_arg1(Input,s(A,Mid,E)) :- fail, (string(Input);atom(Input)), + once(to_case_breaks(Input,CB)), CB=[_,_,_|_], once(cb_better_args(CB,[A|ABCParts])), + ABCParts=[_,_|_], append(Mid,[E],ABCParts),!. +better_arg1(S,A):- string(S),atom_string(A,S),!. +%better_arg1(A,B):- fix_concept(A,B),!. +better_arg1(A,A). + +is_FB_input([xti(_, upper), xti(":", punct), xti(_, digit)]):-!. +is_FB_input([xti("FB", upper), xti(_,lower), xti(_, digit)]):-!. +cb_better_args([_],_):-!,fail. +cb_better_args(X,_):- is_FB_input(X),!,fail. +cb_better_args(CB,Parts):-cb_better_args_ni(CB,Parts),!. +cb_better_args_ni([A,B,C|L],[I|Parts]):- is_FB_input([A,B,C]),maplist(arg(1),[A,B,C],ABC),atomic_list_concat(ABC,I),cb_better_args_ni(L,Parts). +cb_better_args_ni([XTI|L],[I|Parts]):-arg(1,XTI,S),!,atom_string(I,S),cb_better_args_ni(L,Parts). +cb_better_args_ni([],[]):-!. +datalog_to_termlog:- + datalog_to_termlog('./data/*/*.datalog'), + datalog_to_termlog('./data/*/*/*.datalog'), + datalog_to_termlog('./data/*/*/*/*.datalog'), + datalog_to_termlog('./data/*/*/*/*/*.datalog'), + datalog_to_termlog('./data/*/*/*/*/*/*.datalog'), + datalog_to_termlog('./data/*/*/*/*/*/*/*.datalog'). + +%datalog_to_termlog:- datalog_to_termlog('whole_flybase.datalog'). + diff --git a/metta_vspace/pyswip-want/flybase_obo.pl b/metta_vspace/pyswip-want/flybase_obo.pl new file mode 100755 index 00000000..8882e054 --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_obo.pl @@ -0,0 +1,294 @@ +% =========================================== +% BEGIN OBO Loader +% - Douglas R. Miles 2023 +% =========================================== + +% requires: assert_MeTTa/1, track_load_into_file/2 + +:- use_module(library(logicmoo_utils)). +:- ensure_loaded(flybase_main). + +assert_OBO(P,X,Y):- assert_OBO(ontology_info(P,X,Y)). + +% Main entry point +load_obo(Filename) :- \+ atomic(Filename), + absolute_file_name(Filename,X,[read(exists),extension(['']),file_type(directory), + file_errors(fail),solutions(first)]), !, load_obo(X). +load_obo(Filename) :- \+ atomic(Filename), !, + absolute_file_name(Filename,X,[read(exists),extension(['']), file_errors(fail),solutions(first)]), !, load_obo(X). +load_obo(Filename) :- + atomic(Filename), \+ exists_file(Filename), expand_file_name(Filename,List), + List\==[], List\==[Filename], + maplist(load_obo,List). +load_obo(Directory) :- + atomic(Directory), exists_directory(Directory), + directory_file_path(Directory, "*.obo", Filename), + expand_file_name(Filename,List),!,maplist(load_obo,List). +load_obo(Filename) :- fail, + process_obo_file(Filename),!. +load_obo(Filename) :- + process_obo_direct(Filename),!. + + +process_obo_file(File):- atom_concat(File,'.metta_x',MXFile),process_obo_file(File,MXFile). +process_obo_file(_File,MXFile):- exists_file(MXFile),!,process_metta_x_file(MXFile). +process_obo_file(File, MXFile):- exists_file(File),!, + setup_call_cleanup( + open(MXFile,write,Strm,[]), + setup_call_cleanup( + set_stream(Strm,alias(metta_x_output)), + with_option(make_metta_x,'False', + process_obo_direct(File)), + set_stream(current_output,alias(metta_x_output))), + close(Strm)), + remove_duplicates(MXFile), + process_metta_x_file(MXFile). +process_obo_file(File, MXFile):- throw(process_obo_file(File, MXFile)). + + + +% remove_duplicates(+InputFile) - removes duplicate lines from a file in place. +remove_duplicates(InputFile) :- + % Create a temporary output file + format(atom(OutputFile), '~w.tmp', [InputFile]), + % Build the command to remove duplicates and output to the temporary file + format(atom(Command), 'sort ~w | uniq > ~w', [InputFile, OutputFile]), + % Execute the command + shell(Command, ExitStatus), + % Check the exit status + ExitStatus =:= 0, + % Move the temporary output file to the original input file + format(atom(Command2), 'mv ~w ~w', [OutputFile, InputFile]), + shell(Command2, ExitStatus2), + ExitStatus2 =:= 0,!. + +% rename_file(+Source, +Destination) - renames or moves a file. +%rename_file(Source, Destination) :- + % rename(Source, Destination). + +process_obo_direct(Filename):- + directory_file_path(Directory, BaseName, Filename), + file_name_extension(Id, _, BaseName), + symbol_concat(Id,'.metta',OutputFile), + nop(tell(OutputFile)), + track_load_into_file(Filename, + must_det_ll(( + Type = 'OntologyFile', + assert_OBO(id_type,Id,Type), + nb_setval(obo_id,Id),nb_setval(obo_type,Type), + assert_OBO('pathname',Id,Filename),!, + assert_OBO('basename',Id,BaseName),!, + assert_OBO('directory',Id,Directory),!, + setup_call_cleanup(open(Filename, read, Stream, [encoding(utf8)]), + process_obo_stream_repeat(Stream), + close(Stream))))), + nop(told). + + +process_obo_stream_repeat(Stream):- + repeat, + nb_current(obo_type,Type), + nb_current(obo_id, Id), + once((read_line_to_string(Stream, Line), + ((should_show_data(_),fail) -> writeln(Line); true), + normalize_space(chars(Chars),Line))), + Chars\==[], + once(process_obo_chars( Type, Chars, Id)), + ((at_end_of_stream(Stream);reached_file_max) -> ! ; fail). + + +process_obo_stream(Stream,_Type,_Id) :- (at_end_of_stream(Stream);reached_file_max),!. +process_obo_stream(Stream, Type, Id) :- + must_det_ll(( + read_line_to_string(Stream, Line), %writeln(Line), + normalize_space(chars(Chars),Line), + process_obo_chars( Type, Chars, Id))). + + +into_rest(Rest,RestChars,RestStr):- + obo_string(Str,Rest), + normalize_space(chars(RestChars),Str), + obo_string(RestStr,RestChars). + +obo_string(String,[C|Chars]):- var(String), C==' ',!, obo_string(String,Chars). +obo_string(String,Chars):- string_chars(String,Chars). + +process_obo_chars( _, [e,n,d,'_',o,f,'_',f,i,l,e], _):-!. +process_obo_chars( _, [], _) :- !. + +process_obo_chars( _, ['['|Chars], _):- append(Left,[']'],Chars),!, + must_det_ll(( symbol_chars(Type,Left),!, nb_setval(obo_type,Type))). + +process_obo_chars( Type, Chars, _):- + get_key(Key,Chars,Rest),Key == id, + into_rest(Rest,RestChars,_RestStr), + symbol_chars(Id,RestChars), assert_OBO(id_type,Id,Type), + nb_setval(obo_id,Id),nb_setval(obo_type,Type). + +process_obo_chars( Type, Chars, Id):- + must_det_ll(( + get_key(Key,Chars,Rest), + into_rest(Rest,RestChars,RestStr), + process_obo_rest_line(Type,Id,Key,RestChars,RestStr))),!. + +process_obo_rest_line(Type,Id,Reln,Rest,_):- Reln = id, + get_some_items([item(Id)],Rest,[]),!, assert_OBO(id_type,Id,Type),!. +process_obo_rest_line(_Type,Id,Ref,_Chars,S):- + member(Ref,[name,comment]), + assert_OBO(Ref,Id,S),!. + +process_obo_rest_line(Type,Id,Reln,Chars,_):- Reln = relationship,!, + must_det_ll(( + key_like_string(KeyLike,Chars,Rest), + symbol_chars(Key,KeyLike), + into_rest(Rest,RestChars,RestStr), + process_obo_rest_line(Type,Id,Key,RestChars,RestStr))). + +process_obo_rest_line(_Type,Id,Ref,Chars,_):- + \+ (member(C,Chars),member(C,['!','[','"'])), + ( \+ member(' ',Chars)-> symbol_chars(S,Chars);obo_string(S,Chars)), + assert_OBO(Ref,Id,S),!. + +process_obo_rest_line(_Type,Id,is_a,Chars,Str):- + member('!',Chars), atomic_list_concat([L,R],' ! ',Str), + normalize_space(atom(T),L),normalize_space(string(N),R), + assert_OBO(is_a,Id,T), assert_OBO(name,T,N),!. + +process_obo_rest_line(_Type,Id,Reln,Chars,_):- + % member(Reln,[synonym]), + get_some_items(List,Chars,[]), + maplist(fix_obo_arg,List,Args), + Assert=..[Reln,Id|Args], + assert_OBO(Assert),!. + +%process_obo_rest_line(_Type,Id,Reln,Chars,_):- get_some_items(List,Chars,[]), maplist(arg(1),List,Args), assert_OBO(Reln,Id,Args). +process_obo_rest_line(Type,Id,Miss,Rest,Str):- + pp_fb('ERROR'(process_obo_rest_line(Type,Id,Miss,Rest,Str))),!. + +fix_obo_arg(Var,Var):- var(Var),!. +fix_obo_arg("[]",[]):- !. +fix_obo_arg('[]',[]):- !. +fix_obo_arg(X,Y):- string(X),!,normalize_space(string(Y),X). +fix_obo_arg(X,Y):- atom(X),!,normalize_space(atom(Y),X). +fix_obo_arg(X,Y):- compound(X),arg(1,X,XX),!,fix_obo_arg(XX,Y). + +fix_obo_arg(X,X). + +/* +Given the DCG rules we've defined, the input + +``` OBO + +[Term] +id: FBcv:0000391 +name: bang sensitive +namespace: phenotypic_class +def: "A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis." [FlyBase:FBrf0022877] +synonym: "easily shocked" RELATED [FlyBase:FBrf0022877] +is_a: FBcv:0000389 ! paralytic + +``` +Would be parsed into the following Prolog terms: +``` +[ + bracketed(['Term']), + key('id'), item('FBcv:0000391'), + key('name'), item('bang sensitive'), + key('namespace'), item('phenotypic_class'), + key('def'), quoted("A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis."), bracketed(['FlyBase:FBrf0022877']), + key('synonym'), quoted("easily shocked"), keyword('RELATED'), bracketed(['FlyBase:FBrf0022877']), + key('is_a'), item('FBcv:0000389'), named('paralytic') +] +``` + +*/ + + +get_key(Key)-->key_like_string(Chars),[':'],{symbol_chars(Key,Chars)},!. +get_some_items(I)--> [' '],!,get_some_items(I). +get_some_items(_,[],[]):-!. +get_some_items([H|T])-->get_one_item(H),get_some_items(T). get_some_items([])-->[]. +get_one_item(I)--> [' '],!,get_one_item(I). +get_one_item(quoted(Item))-->[x,s,d,':'],symbol_or_url(Chars),{symbol_chars(Item,[x,s,d,':'|Chars])}. +get_one_item(quoted(Item))-->[h,t,t,p],symbol_or_url(Chars),{obo_string(Item,[h,t,t,p|Chars])}. +get_one_item(quoted(Item))-->[f,t,p],symbol_or_url(Chars),{obo_string(Item,[f,t,p|Chars])}. +get_one_item(quoted(Item))-->['"'],string_until_end_quote(Chars),{obo_string(Item,Chars)}. +get_one_item(named(Item))-->['!'],whs,named_like_string(Chars),{symbol_chars(Item,Chars)}. +get_one_item(bracketed(Items))-->['['],whs,items(Items),whs,[']']. +get_one_item(bracketed(Items))-->['{'],whs,items(Items),whs,['}']. +%get_one_item(item(Item))--> whs,key_like_string(Chars),whs,{Chars \==[], symbol_chars(Item,Chars)}. +get_one_item(keyword(Keyword))-->whs,id_like_string(Chars),{Chars\==[]},whs,{symbol_chars(Keyword,Chars)}. +get_one_item(text(Text))-->named_like_string(Chars),{obo_string(Text,Chars)}. +get_one_item(text(Text),[H|T],[]):- ground([H|T]),obo_string(Text,[H|T]),!. +items([Item|Rest])-->item(Item),whs,[','],whs,items(Rest). +items([Item])-->item(Item),!. +item(Item)-->symbol_or_url(Chars),{Chars\==[],symbol_chars(Item,Chars)}. +key_like_string([H|T])-->[H],{\+member(H,[':',' ','\t','\n'])},key_like_string(T). +key_like_string([])-->[]. +id_like_string([H|T])-->[H],{\+member(H,['!',' ','\t','\n',',','[',']','{','}','"'])},id_like_string(T). +id_like_string([])-->[]. +symbol_or_url([H|T])-->[H],{\+member(H,[',','[',']','"',' '])},symbol_or_url(T). +symbol_or_url([])-->[]. +string_until_end_quote([])-->['"'],!. +string_until_end_quote([H|T])-->(['\\',H];[H]),!,string_until_end_quote(T). +named_like_string([H|T])-->[H],{\+member(H,['\n'])},named_like_string(T). +named_like_string([])-->[]. +whs-->[''],!,whs. whs-->[]. + +% =========================================== +% END OBO Loader +% =========================================== + +assert_OBO(property_value(Term, URI, V, 'xsd:string')):- assert_OBO(property_value(Term, URI, V)). +assert_OBO(property_value(Term, URI, V)):- simplify_obo_arg(URI,Pred),!,assert_OBO(property_value(Term, Pred, V)). +assert_OBO(property_value(Term, Pred, V)):- simplify_obo_arg(V,VV),!,assert_OBO(property_value(Term, Pred, VV)). +assert_OBO(property_value(Term, Pred, V)):- atom(Pred),!,OBO=..[Pred,Term,V],assert_OBO(OBO). +assert_OBO(synonym(Pred,A,Term,V)):- simplify_obo_arg(V,VV),!,assert_OBO(synonym(Pred,A,Term,VV)). +assert_OBO(ontology_info(Pred,Term,V)):- assert_OBO(property_value(Term, Pred, V)). +assert_OBO([F|List]):- is_list([F|List]),atom(F),OBO=..[F|List],!,assert_OBO(OBO). +assert_OBO(OBO):- + must_det_ll(( + OBO=..[Fn|Cols], + into_obofn(Fn,OboFn), + assert_OB1([OboFn|Cols]))). + +assert_OB1(List):- nb_current(make_metta_x,'True'),!, assert_OB2(List). +assert_OB1([OboFn|Cols]):- + OBO1=..[OboFn|Cols], + assert_to_metta(OBO1). + +assert_OB2(List):- maplist(to_metta_x_args,List,ListO), + atomics_to_string(ListO,'\t',Str), + writeln(metta_x_output,Str). + +to_metta_x_args(X,O):- X==[],!,O='[]'. +to_metta_x_args(X,O):- atomic(X),!,O=X. +to_metta_x_args(X,O):- term_to_atom(X,O). + +args_x_metta(X,O):- X=='[]',!,O=[]. +args_x_metta(X,O):- atomic(X),atom_concat('?-',Read,X),!,atom_to_term(Read,O,_). +args_x_metta(X,O):- X=O. +/* + OBOW=..[OboFn|Cols], + (is_converting -> (format('~N'), write_src(OBOW));(OBO1=..OBOW,assert_MeTTa(OBO1))))), + !. +*/ + +into_obofn(Fn,OboFn):- atom_concat('obo-',_,Fn),!,Fn=OboFn,!. +into_obofn(Fn,OboFn):- atom_concat('obo-',Fn,OboF_),!,use_dashes(OboF_,OboFn). + + +use_dashes(OboF_,OboFn):- + atomic_list_concat(List,'_',OboF_), + atomic_list_concat(List,'-',OboFn),!. + + +simplify_obo_arg(I,_O):- \+ string(I), \+ atom(I),!,fail. +simplify_obo_arg([],_O):- !, fail. +simplify_obo_arg("[]",[]):-!. +simplify_obo_arg(I,O):- atom_concat('http://purl.obolibrary.org/obo/chebi/',O,I),!. +simplify_obo_arg(I,O):- atom_concat(' ',O,I),!. +simplify_obo_arg(I,O):- atom_concat(O,' ',I),!. +simplify_obo_arg(I,O):- atom_number(I,O),!. + + diff --git a/metta_vspace/pyswip-want/flybase_scheme.pl b/metta_vspace/pyswip-want/flybase_scheme.pl new file mode 100755 index 00000000..24c261a3 --- /dev/null +++ b/metta_vspace/pyswip-want/flybase_scheme.pl @@ -0,0 +1,2716 @@ +'information_schema.columns'(flybase,pg_catalog,pg_stat_database,temp_bytes,15,'','YES',bigint,'','',64,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int8,'','','','',15,'NO','NO','','','','','','NO','NEVER','','NO'). +'information_schema.columns'(flybase,pg_catalog,pg_type,typelem,13,'','NO',oid,'','','','','','','','','','','','','','','','','',flybase,pg_catalog,oid,'','','','',13,'NO','NO','','','','','','NO','NEVER','','YES'). 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+'information_schema.columns'(flybase,public,alignment_evidence,alignment_evidence_id,1,'','YES',text,'',1073741824,'','','','','','','','','','','','','','','',flybase,pg_catalog,text,'','','','',1,'NO','NO','','','','','','NO','NEVER','','NO'). +'information_schema.columns'(flybase,public,featurerange,leftendf_id,5,'','YES',integer,'','',32,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int4,'','','','',5,'NO','NO','','','','','','NO','NEVER','','YES'). +'information_schema.columns'(flybase,pg_catalog,pg_statio_all_sequences,blks_read,4,'','YES',bigint,'','',64,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int8,'','','','',4,'NO','NO','','','','','','NO','NEVER','','NO'). +'information_schema.columns'(flybase,pg_catalog,pg_stat_user_indexes,relname,4,'','YES',name,'','','','','','','','','','','',flybase,pg_catalog,'C','','','',flybase,pg_catalog,name,'','','','',4,'NO','NO','','','','','','NO','NEVER','','NO'). +'information_schema.columns'(flybase,pg_catalog,pg_subscription,subname,3,'','NO',name,'','','','','','','','','','','',flybase,pg_catalog,'C','','','',flybase,pg_catalog,name,'','','','',3,'NO','NO','','','','','','NO','NEVER','','YES'). +'information_schema.columns'(flybase,public,expressionprop,expressionprop_id,1,'nextval(\'expressionprop_expressionprop_id_seq\'::regclass)','NO',integer,'','',32,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int4,'','','','',1,'NO','NO','','','','','','NO','NEVER','','YES'). +'information_schema.columns'(flybase,pg_catalog,pg_statistic_ext,stxnamespace,4,'','NO',oid,'','','','','','','','','','','','','','','','','',flybase,pg_catalog,oid,'','','','',4,'NO','NO','','','','','','NO','NEVER','','YES'). +'information_schema.columns'(flybase,public,library_expression,pub_id,4,'','NO',integer,'','',32,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int4,'','','','',4,'NO','NO','','','','','','NO','NEVER','','YES'). diff --git a/metta_vspace/pyswip-want/metta_compiler.pl b/metta_vspace/pyswip-want/metta_compiler.pl new file mode 100755 index 00000000..30b7bb8a --- /dev/null +++ b/metta_vspace/pyswip-want/metta_compiler.pl @@ -0,0 +1,1195 @@ +% ============================== +% Prolog to MeTTa transpilation (which uses the Host SWI-Prolog compiler) +% This Prolog code block is mainly aimed at compiling/optimizing and transforming +% Prolog predicates to functional equivalents and vice versa, with special attention +% to handling different logical constructs and performing conversions between +% functions and predicates. +% ============================== + +% Setting the file encoding to ISO-Latin-1 +:- encoding(iso_latin_1). +% Flushing the current output +:- flush_output. +% Setting the Rust backtrace to Full +:- setenv('RUST_BACKTRACE',full). +% Loading various library files +:- ensure_loaded(swi_support). +:- ensure_loaded(metta_testing). +:- ensure_loaded(metta_utils). +:- ensure_loaded(metta_reader). +:- ensure_loaded(metta_interp). +:- ensure_loaded(metta_space). +% ======================================= +% TODO move non flybase specific code between here and the compiler +:- ensure_loaded(flybase_main). +% ======================================= +%:- set_option_value(encoding,utf8). + +% Meta-predicate that ensures that for every instance where G1 holds, G2 also holds. +:- meta_predicate(for_all(0,0)). +for_all(G1,G2):- forall(G1,G2). + +:- op(700,xfx,'=~'). + +compound_non_cons(B):- compound(B), \+ B = [_|_]. +iz_conz(B):- compound(B), B=[_|_]. + +'=~'(A,B):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). +'=~'(B,A):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). +'=~'(A,B):- iz_conz(A),iz_conz(B),!,A=B. +'=~'(A,B):- var(A),iz_conz(B),!,A=B. +'=~'(A,B):- iz_conz(A),var(B),!,A=B. +'=~'(A,B):- compound_non_cons(A),var(B),!,A=..B. +'=~'(A,B):- compound_non_cons(B),!,A=B. +'=~'(A,B):- '=..'(A,B). + +%into_list_args(A,AA):- is_ftVar(A),AA=A. +%into_list_args(C,[C]):- \+ compound(C),!. +into_list_args(C,C):- \+ compound(C),!. +into_list_args(A,AA):- is_ftVar(A),AA=A. +into_list_args([H|T],[H|T]):- \+ is_list(T),!. +into_list_args([H,List,A],HT):- H == u_assign,!,append(List,[A],HT),!. +into_list_args([H|T],[H|T]):- is_list(T),!. +into_list_args(u_assign(List, A),[H|T]):- append(List,[A],[H|T]),!. +into_list_args(holds(A),AA):- !, into_list_args(A,AA),!. +into_list_args(C,FArgs):- compound_name_arguments(C,F,Args),!,into_list_args([F|Args],FArgs). + + + +compound_name_list(AsPred,FP,PredArgs):- var(AsPred),!,AsPred=[FP|PredArgs]. +compound_name_list(AsPred,FP,PredArgs):- iz_conz(AsPred),!,AsPred=[FP|PredArgs]. +compound_name_list(AsPred,FP,PredArgs):- into_list_args(AsPred,[FP|PredArgs]),!. +compound_name_list(AsPred,FP,PredArgs):- compound_non_cons(AsPred),!,compound_name_arguments(AsPred,FP,PredArgs). +% =============================== +% COMPILER / OPTIMIZER +% Scryer Compiler vs PySWIP ASM Compiler +% +% PySWIP is 222 times faster per join +% =============================== + + +% Conversion is possible between a function and a predicate of arity when the result is at the nth arg +:- dynamic decl_functional_predicate_arg/3. + +% Converion is possible between a function and predicate is tricky +functional_predicate_arg_tricky(is, 2, 1). % E.g. eval(is(+(1,2)),Result) converts to is(Result,+(1,2)). +% Defining standard mappings for some common functions/predicates +decl_functional_predicate_arg(append, 3, 3). +decl_functional_predicate_arg(+, 3, 3). +decl_functional_predicate_arg(pi, 1, 1). +decl_functional_predicate_arg('Empty', 1, 1). +decl_functional_predicate_arg(call,4,4). +decl_functional_predicate_arg(eval, 2, 2). +decl_functional_predicate_arg(edge, 2, 2). +decl_functional_predicate_arg('==', 2, 2). +decl_functional_predicate_arg('is-same', 2, 2). +decl_functional_predicate_arg(assertTrue, 2, 2). +decl_functional_predicate_arg(case, 3, 3). +decl_functional_predicate_arg(assertFalse, 2, 2). +decl_functional_predicate_arg(match,4,4). +decl_functional_predicate_arg('TupleConcat',3,3). +decl_functional_predicate_arg('new-space',1,1). + +decl_functional_predicate_arg(superpose, 2, 2). + +do_predicate_function_canonical(F,FF):- predicate_function_canonical(F,FF),!. +do_predicate_function_canonical(F,F). +predicate_function_canonical(is_Empty,'Empty'). + +% Mapping any current predicate F/A to a function, if it's not tricky +functional_predicate_arg(F, A, L):- decl_functional_predicate_arg(F, A, L). +functional_predicate_arg(F, A, L):- (atom(F)->true;trace), predicate_arity(F,A), + \+ functional_predicate_arg_tricky(F,A,_), L=A, + \+ decl_functional_predicate_arg(F, A, _). +functional_predicate_arg(F, A, L):- functional_predicate_arg_tricky(F, A, L). + +predicate_arity(F,A):- metta_atom('&self',[:,F,[->|Args]]), length(Args,A). +predicate_arity(F,A):- current_predicate(F/A). +% Certain constructs should not be converted to functions. +not_function(P):- atom(P),!,not_function(P,0). +not_function(P):- callable(P),!,functor(P,F,A),not_function(F,A). +not_function(F,A):- is_arity_0(F,FF),!,not_function(FF,A). +not_function(!,0). +not_function(print,1). +not_function((':-'),2). +not_function((','),2). +not_function((';'),2). +not_function(('='),2). +not_function(('or'),2). + +not_function('a',0). +not_function('b',0). +not_function(F,A):- is_control_structure(F,A). +not_function(A,0):- atom(A),!. +not_function('True',0). +not_function(F,A):- predicate_arity(F,A),AA is A+1, \+ decl_functional_predicate_arg(F,AA,_). + +needs_call_fr(P):- is_function(P,_Nth),functor(P,F,A),AA is A+1, \+ current_predicate(F/AA). + +is_control_structure(F,A):- atom(F), atom_concat('if-',_,F),A>2. + +'=='(A, B, Res):- as_tf(equal_enough(A, B),Res). +'or'(G1,G2):- once((G1 ; G2)). +'or'(G1,G2,Res):- as_tf((G1 ; G2),Res). + +% Function without arguments can be converted directly. +is_arity_0(AsFunction,F):- compound(AsFunction), compound_name_arity(AsFunction,F,0). + +% Determines whether a given term is a function and retrieves the position +% in the predicate where the function Result is stored/retrieved +is_function(AsFunction, _):- is_ftVar(AsFunction),!,fail. +is_function(AsFunction, _):- AsFunction=='$VAR',!, trace, fail. +is_function(AsFunction, Nth) :- is_arity_0(AsFunction,F), \+ not_function(F,0), !,Nth=1. +is_function(AsFunction, Nth) :- is_arity_0(AsFunction,_), !,Nth=1. +is_function(AsFunction, Nth) :- + callable(AsFunction), + functor(AsFunction, Functor, A), + \+ not_function(Functor, A), + AA is A + 1, + functional_predicate_arg_maybe(Functor, AA, Nth). + +functional_predicate_arg_maybe(F, AA, Nth):- functional_predicate_arg(F, AA, Nth),!. +functional_predicate_arg_maybe(F, AA, _):- A is AA - 1,functional_predicate_arg(F,A,_),!,fail. +functional_predicate_arg_maybe(F, Nth, Nth):- asserta(decl_functional_predicate_arg(F, Nth, Nth)),!. + +% -------------------------------- +% FUNCTS_TO_PREDS EXPLANATION +% -------------------------------- + +% functs_to_preds is a predicate that converts all Term functions to their equivalent predicates. +% It takes three arguments - RetResult, which will hold the result of the function evaluation, +% Convert, which is the function that needs to be converted, and Converted, which will hold the equivalent predicate. +% Example: +% +% ?- functs_to_preds(RetResult, is(pi+pi), Converted). +% +% Converted = (pi(_A), +% +(_A, _A, _B), +% _C is _B, +% eval(_C, RetResult)). +% + +functs_to_preds([Eq,H,B],OO):- Eq == '=', compile_for_assert(H, B, OO),!. +functs_to_preds(EqHB,OO):- compile_head_for_assert(EqHB,OO),!. + +functs_to_preds(I,OO):- + sexpr_s2p(I, M), + /*trace,*/ + f2p(_,_,M,O), + expand_to_hb(O,H,B), + head_preconds_into_body(H,B,HH,BB), + OO = (HH:-BB). + + +% ?- compile_for_exec(RetResult, is(pi+pi), Converted). +compile_for_exec(Res,I,BB):- + HeadIs = [exec], + AsBodyFn = I, + compile_for_assert(HeadIs, AsBodyFn, Converted), + (Converted = (exec(Res):- BB)),!, + (portray_clause((Converted))),!. + + +compile_for_exec(Res,I,BB):- + =(I, M), + f2p(exec(),_,(exec()=M),O), + expand_to_hb(O,H,B), + head_preconds_into_body(H,B,HH,BB), + ignore(exec(Res)=HH), + (portray_clause((exec2(Res):- BB))),!. + +compile_for_exec(Res,I,O):- + =(I, M), f2p(exec(),Res,M,O), + (portray_clause((exec1(Res):- O))),!. + + +% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. +compile_head_for_assert(HeadIs, (Head:-Body)):- + compile_head_for_assert(HeadIs, NewHeadIs,Converted), + head_preconds_into_body(NewHeadIs,Converted,Head,Body). + +compile_head_for_assert(HeadIs, NewHeadIs,Converted) :- /*trace,*/ + as_functor_args(HeadIs,F,A,ArgsL), + maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), + as_functor_args(NewHeadIs,F,A,NewArgs), + list_to_conjuncts(CodeForValueL,Converted),!. + + +as_functor_args(AsPred,F,A,ArgsL):- nonvar(AsPred),!,into_list_args(AsPred,[F|ArgsL]),length(ArgsL,A). +as_functor_args(AsPred,F,A,ArgsL):- nonvar(F),length(ArgsL,A),AsPred =~ [F|ArgsL]. + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + (AsBodyFn =@= HeadIs ; AsBodyFn == []), !,/*trace,*/ + compile_head_for_assert(HeadIs,Converted). + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- is_ftVar(AsBodyFn), /*trace,*/ + AsFunction = HeadIs,!, + must_det_ll(( + Converted = (HeadC :- BodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn + %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + f2p(HeadIs,HResult,AsFunction,HHead), + (var(HResult) -> (Result = HResult, HHead = Head) ; + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), + NextBody = u_assign(AsBodyFn,Result), + head_preconds_into_body(Head,NextBody,HeadC,BodyC), + nop(ignore(Result = '$VAR'('HeadRes'))))),!. + +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + AsFunction = HeadIs, + must_det_ll(( + Converted = (HeadC :- NextBodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn + %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + f2p(HeadIs,HResult,AsFunction,HHead), + (var(HResult) -> (Result = HResult, HHead = Head) ; + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), + verbose_unify(Convert), + f2p(HeadIs,Result,AsBodyFn,NextBody), + %RetResult = Converted, + %RetResult = _, + head_preconds_into_body(Head,NextBody,HeadC,NextBodyC), + fbug([convert(Convert),head_preconds_into_body(HeadC:-NextBodyC)]), + %if_t(((Head:-NextBody)\=@=(HeadC:-NextBodyC)),fbug(was(Head:-NextBody))), + + nop(ignore(Result = '$VAR'('HeadRes'))))),!. + +% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. +compile_for_assert(HeadIs, AsBodyFn, Converted) :- + AsFunction = HeadIs, Converted = (HeadCC :- BodyCC), + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), + as_functor_args(Head,F,A,ArgsL), + maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), + as_functor_args(HeadC,F,A,NewArgs), + list_to_conjuncts(CodeForValueL,CodeForHeadArgs), + f2p(HeadIs,Result,AsBodyFn,NextBody), + combine_code(CodeForHeadArgs,NextBody,BodyC),!, + head_preconds_into_body(HeadC,BodyC,HeadCC,BodyCC),!. + + +/* +*/ + +head_preconds_into_body(Head,Body,Head,Body):- \+ compound(Head),!. +head_preconds_into_body((PreHead,True),Converted,Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body((True,PreHead),Converted,Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body(PreHead,(True,Converted),Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body(PreHead,(Converted,True),Head,Body):- True==true,!, + head_preconds_into_body(PreHead,Converted,Head,Body). +head_preconds_into_body((AsPredO,Pre),Converted,Head,Body):- + head_preconds_into_body(Pre,(AsPredO,Converted),Head,Body). +head_preconds_into_body(AHead,Body,Head,BodyNew):- + assertable_head(AHead,Head), + optimize_body(Head,Body,BodyNew). + +assertable_head(u_assign(FList,R),Head):- FList =~ [F|List], + append(List,[R],NewArgs), atom(F),!, Head=..[F|NewArgs]. +assertable_head(Head,Head). + +optimize_body(_Head,Body,BodyNew):- var(Body),!,Body=BodyNew. +optimize_body(Head,(B1*->B2;B3),(BN1*->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). +optimize_body(Head,(B1->B2;B3),(BN1->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). +optimize_body(Head,(B1,B2),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). +optimize_body(Head,(B2,B1),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). +optimize_body(Head,(B1,B2),(BN1,BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(Head,(B1:-B2),(BN1:-BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(Head,(B1;B2),(BN1;BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). +optimize_body(_Head,Body,BodyNew):- Body=BodyNew. + + +compile_test_then_else(RetResult,If,Then,Else,Converted):- + f2p(HeadIs,ThenResult,Then,ThenCode), + f2p(HeadIs,ElseResult,Else,ElseCode), + Converted=(If*->(ThenCode,ThenResult=RetResult);(ElseCode,ElseResult=RetResult)). + +:- discontiguous(compile_flow_control/4). + +compile_flow_control(_HeadIs,_RetResult,Convert,_):- \+ compound(Convert),!,fail. +compile_flow_control(_HeadIs,_RetResult,Convert,_):- compound_name_arity(Convert,_,0),!,fail. +compile_flow_control(HeadIs,RetResult,Convert, (Code1,Eval1Result=Result,Converted)) :- % dif_functors(HeadIs,Convert), + Convert =~ chain(Eval1,Result,Eval2),!, + f2p(HeadIs,Eval1Result,Eval1,Code1), + f2p(HeadIs,RetResult,Eval2,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ if(Cond,Then,Else),!,Test = is_True(CondResult), + f2p(HeadIs,CondResult,Cond,CondCode), + compile_test_then_else(RetResult,(CondCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ 'if-error'(Value,Then,Else),!,Test = is_Error(ValueResult), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ 'if-empty'(Value,Then,Else),!,Test = is_Empty(ValueResult), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + (Convert =~ 'if-non-empty-expression'(Value,Then,Else)),!, + (Test = ( \+ is_Empty(ValueResult))), + f2p(HeadIs,ValueResult,Value,ValueCode), + compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['if-equals',Value1,Value2,Then,Else],!,Test = equal_enough(ResValue1,ResValue2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). + +cname_var(Sym,Src):- gensym(Sym,SrcV),Src='$VAR'(SrcV). +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['assertEqual',Value1,Value2],!, + cname_var('Src_',Src), + cname_var('FA_',ResValue1), + cname_var('FA_',ResValue2), + cname_var('FARL_',L1), + cname_var('FARL_',L2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + Converted = + (Src = Convert, + loonit_assert_source_tf(Src, + (findall(ResValue1,CodeForValue1,L1), + findall(ResValue2,CodeForValue2,L2)), + equal_enough(L1,L2),RetResult)). +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['assertEqualToResult',Value1,Value2],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = loonit_assert_source_tf(Convert, + findall(ResValue1,CodeForValue1,L1), + equal_enough(L1,Value2),RetResult). + + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ 'add-atom'(Where,What), !, + =(What,WhatP), + Converted = as_tf('add-atom'(Where,WhatP),RetResult). + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ 'add-atom'(Where,What,RetResult), !, + =(What,WhatP), + Converted = as_tf('add-atom'(Where,WhatP),RetResult). + + +compile_flow_control(HeadIs,RetResult,Convert, (Converted)) :- + Convert =~ ['superpose',UValueL], + maybe_unlistify(UValueL,ValueL,URetResult,RetResult), + maplist(f2p_assign(HeadIs,URetResult),ValueL,CodeForValueL), + list_to_disjuncts(CodeForValueL,Converted),!. + + +maybe_unlistify([UValueL],ValueL,RetResult,[URetResult]):- is_list(UValueL),!, + maybe_unlistify(UValueL,ValueL,RetResult,URetResult). +maybe_unlistify(ValueL,ValueL,RetResult,RetResult). + +list_to_disjuncts([],false). +list_to_disjuncts([A],A):- !. +list_to_disjuncts([A|L],(A;D)):- list_to_disjuncts(L,D). + + +f2p_assign(_HeadIs,V,Value,is_True(V)):- Value=='True'. +f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- \+ compound(Value),!. +f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- is_ftVar(Value),!. +f2p_assign(HeadIs,ValueResult,Value,Converted):- + f2p(HeadIs,ValueResultR,Value,CodeForValue), + %into_equals(ValueResultR,ValueResult,ValueResultRValueResult), + ValueResultRValueResult = (ValueResultR=ValueResult), + combine_code(CodeForValue,ValueResultRValueResult,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, (ValueCode, Converted)) :- + Convert =~ ['case',Value|Options], + \+ is_ftVar(Value),!, + cname_var('CASE_EVAL_',ValueResult), + ConvertCases =~ ['case',ValueResult|Options], + compile_flow_control(HeadIs,RetResult,ConvertCases, Converted), + f2p(HeadIs,ValueResult,Value,ValueCode). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',Value,[Opt|Options]],nonvar(Opt),!, + must_det_ll(( + compile_case_bodies(HeadIs,Opt,caseStruct(Value,If,RetResult,Then)), + Converted = ( If -> Then ; Else ), + ConvertCases =~ ['case',Value,Options], + compile_flow_control(HeadIs,RetResult,ConvertCases,Else))). + +compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',_Value,[]],!,Converted = (fail,RetResult=[]),!. + +/* +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['case',Value,Options],!, + must_det_ll(( + maplist(compile_case_bodies(HeadIs),Options,Cases), + Converted = + (( AllCases = Cases, + once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), + (MatchCode,unify_enough(Value,MatchVar)))), + (BodyCode), + BodyResult=RetResult)))). + +compile_flow_control(HeadIs,_,Convert, Converted) :- + Convert =~ ['case',Value,Options,RetResult],!, + must_det_ll(( + f2p(HeadIs,ValueResult,Value,ValueCode), + maplist(compile_case_bodies(HeadIs),Options,Cases), + Converted = + (( AllCases = Cases, + call(ValueCode), + once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), + both_of(ValueResult,MatchCode,unify_enough(ValueResult,MatchVar)))), + call(BodyCode), + BodyResult=RetResult)))). + + +both_of(Var,G1,G2):- nonvar(Var),!,call(G2),call(G1). +both_of(_Var,G1,G2):- call(G1),call(G2). + +*/ + +compile_case_bodies(HeadIs,[Match,Body],caseStruct(_,true,BodyResult,BodyCode)):- Match == '%void%',!, + f2p(HeadIs,BodyResult,Body,BodyCode). +compile_case_bodies(HeadIs,[Match,Body],caseStruct(MatchResult,If,BodyResult,BodyCode)):- !, + f2p(HeadIs,MatchResultV,Match,MatchCode), + combine_code(MatchCode,unify_enough(MatchResult,MatchResultV),If), + f2p(HeadIs,BodyResult,Body,BodyCode). +compile_case_bodies(HeadIs,MatchBody,CS):- compound(MatchBody), MatchBody =~ MB,compile_case_bodies(HeadIs,MB,CS). + +compile_flow_control(HeadIs,RetResult,Convert,CodeForValueConverted) :- + Convert =~ [Plus,N,Value], atom(Plus), current_predicate(Plus/3), number(N), \+ number(Value), \+ is_ftVar(Value),!, + f2p(HeadIs,ValueResult,Value,CodeForValue),!, + Converted =.. [Plus,N,ValueResult,RetResult], + combine_code(CodeForValue,Converted,CodeForValueConverted). + +compound_equals(COL1,COL2):- COL1=@=COL2,!,COL1=COL2. +compound_equals(COL1,COL2):- compound_equals1(COL1,COL2). +compound_equals1(COL1,COL2):- is_ftVar(COL1),!,is_ftVar(COL2),ignore(COL1=COL2),!. +compound_equals1(COL1,COL2):- compound(COL1),!,compound(COL2), COL1=COL2. + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['superpose',COL],compound_equals(COL,'collapse'(Value1)), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = (findall(ResValue1,CodeForValue1,Gathered),member(RetResult,Gathered)). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['collapse',Value1],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + Converted = (findall(ResValue1,CodeForValue1,RetResult)). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- + Convert =~ ['compose',Value1],!, + Convert2 =~ ['collapse',Value1],!, + compile_flow_control(HeadIs,RetResult,Convert2, Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['unify',Value1,Value2,Then,Else],!,Test = metta_unify(ResValue1,ResValue2), + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,ResValue2,Value2,CodeForValue2), + compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ ['let',Var,Value1,Body],!, + f2p(HeadIs,ResValue1,Value1,CodeForValue1), + f2p(HeadIs,RetResult,Body,BodyCode), + into_equals(Var,ResValue1,VarResValue1), + list_to_conjuncts([CodeForValue1,VarResValue1,BodyCode],Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['let*',Bindings,Body],!, + must_det_ll(( + maplist(compile_let_star(HeadIs),Bindings,CodeList), + list_to_conjuncts(CodeList,BindingCode), + f2p(HeadIs,RetResult,Body,BodyCode), + combine_code(BindingCode,BodyCode,Converted))). + + compile_let_star(HeadIs,NV,Converted):- + must_det_ll((NV =~ [Expression,Var], + (var(Var)-> f2p(HeadIs,Var,Expression,Converted); + (var(Expression)-> f2p(HeadIs,Expression,Var,Converted); + (f2p(HeadIs,Eval1Result,Expression,Code), + into_equals(Eval1Result,Var,Eval1ResultVar), + combine_code(Code,Eval1ResultVar,Converted)))))). + + + +% match('&self',f(1)=Y,Y) +compile_flow_control(HeadIs,Y,Convert,Converted) :- dif_functors(HeadIs,Convert), + Convert=~ match('&self',AsFunctionY,YY), nonvar(AsFunctionY),( AsFunctionY =~ (AsFunction=Y)), nonvar(AsFunction), + !, Y==YY, + f2p(HeadIs,Y,AsFunction,Converted),!. + +compile_flow_control(HeadIs,RetResult,Convert,Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['match',_Self,Pattern,Template],!, + f2p(HeadIs,_,Pattern,PatternCode), + f2p(HeadIs,RetResult,Template,TemplateCode), + combine_code(PatternCode,TemplateCode,Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['match',_Self,Pattern,Template],!, + must_det_ll(( + f2p(HeadIs,_,Pattern,PatternCode), + into_equals(RetResult,Template,TemplateCode), + combine_code(PatternCode,TemplateCode,Converted))). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), + Convert =~ ['if-decons',Atom,Head,Tail,Then,Else],!,Test = unify_cons(AtomResult,ResHead,ResTail), + f2p(HeadIs,AtomResult,Atom,AtomCode), + f2p(HeadIs,ResHead,Head,CodeForHead), + f2p(HeadIs,ResTail,Tail,CodeForTail), + compile_test_then_else(RetResult,(AtomCode,CodeForHead,CodeForTail,Test),Then,Else,Converted). + + + +compile_flow_control(_HeadIs,RetResult,Convert,is_True(RetResult)) :- is_compiled_and(AND), + Convert =~ [AND],!. + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body],!, + f2p(HeadIs,RetResult,Body,BodyCode), + compile_test_then_else(RetResult,BodyCode,'True','False',Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2],!, + f2p(HeadIs,B1Res,Body1,Body1Code), + f2p(HeadIs,RetResult,Body2,Body2Code), + into_equals(B1Res,'True',AE), + Converted = (Body1Code,AE,Body2Code),!. + + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2],!, + f2p(HeadIs,B1Res,Body1,Body1Code), + f2p(HeadIs,_,Body2,Body2Code), + into_equals(B1Res,'True',AE), + compile_test_then_else(RetResult,(Body1Code,AE,Body2Code),'True','False',Converted). + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), + Convert =~ [AND,Body1,Body2|BodyMore],!, + And2 =~ [AND,Body2|BodyMore], + Next =~ [AND,Body1,And2], + compile_flow_control(HeadIs,RetResult, Next, Converted). + +compile_flow_control(HeadIs,RetResult,sequential(Convert), Converted) :- !, + compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted). + +compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted,Code) :- !, + maplist(each_result(HeadIs,RetResult),Convert, Converted), + list_to_disjuncts(Converted,Code). + + +compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), + Convert =~ if(Cond,Then),!, + f2p(HeadIs,CondResult,Cond,CondCode), + f2p(HeadIs,RetResult,Then,ThenCode), + Converted = ((CondCode,is_True(CondResult)),ThenCode). + +each_result(HeadIs,RetResult,Convert,Converted):- + f2p(HeadIs,OneResult,Convert,Code1), + into_equals(OneResult,RetResult,Code2), + combine_code(Code1,Code2,Converted). + +compile_flow_control(HeadIs,RetResult,Converter, Converted):- de_eval(Converter,Convert),!, + compile_flow_control(HeadIs,RetResult,Convert, Converted). + +compile_flow_control(HeadIs,_Result,Convert, Converted) :- fail, + functor(Convert,Func,PA), + functional_predicate_arg(Func,PA,Nth), + Convert =~ [Func|PredArgs], + nth1(Nth,PredArgs,Result,FuncArgs), + RetResult = Result, + AsFunct =~ [Func|FuncArgs], + compile_flow_control(HeadIs,RetResult,AsFunct, Converted). + +dif_functors(HeadIs,_):- var(HeadIs),!,fail. +dif_functors(HeadIs,_):- \+ compound(HeadIs),!. +dif_functors(HeadIs,Convert):- compound(HeadIs),compound(Convert), + compound_name_arity(HeadIs,F,A),compound_name_arity(Convert,F,A). + +is_compiled_and(AND):- member(AND,[ (','), ('and')]). + +flowc. + + + :- discontiguous f2p/4. + +f2p(_HeadIs,Convert, Convert, true) :- + (is_ftVar(Convert);number(Convert)),!.% Check if Convert is a variable + +% If Convert is a variable, the corresponding predicate is just eval(Convert, RetResult) +f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- + is_ftVar(Convert),!,% Check if Convert is a variable + into_equals(RetResult,Convert,RetResultConverted). + % Converted = eval(Convert, RetResult). % Set Converted to eval(Convert, RetResult) +f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- + number(Convert),!,into_equals(RetResult,Convert,RetResultConverted). + +f2p(_HeadIs,RetResult,Convert, Converted) :- % HeadIs\=@=Convert, + is_arity_0(Convert,F), !, Converted = u_assign([F],RetResult),!. + + + +/*f2p(HeadIs,RetResult, ConvertL, (Converted,RetResultL=RetResult)) :- is_list(ConvertL), + maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), + list_to_conjuncts(ConvertedL,Converted).*/ + +% If Convert is an "eval" function, we convert it to the equivalent "is" predicate. +f2p(HeadIs,RetResult,EvalConvert,Converted):- EvalConvert =~ eval(Convert), !, + must_det_ll((f2p(HeadIs,RetResult,Convert, Converted))). + +f2p(HeadIs,RetResult,Convert, Converted):- + compound(Convert), \+ compound_name_arity(Convert,_,0), + compile_flow_control(HeadIs,RetResult,Convert, Converted),!. + +f2p(HeadIs,RetResult,Convert, Converted):- + compound(Convert), Convert = u_assign(C, Var), compound_non_cons(C),into_list_args(C,CC),!, + f2p(HeadIs,RetResult,u_assign(CC, Var), Converted). + +f2p(_HeadIs,_RetResult,Convert, Converted):- + compound(Convert), Convert = u_assign(C, _Var), is_list(C),Converted = Convert,!. + +f2p(HeadIs,RetResult,Convert, Converted) :- + atom(Convert), functional_predicate_arg(Convert,Nth,Nth2), + Nth==1,Nth2==1, + HeadIs\=@=Convert, + Convert = F,!, + must_det_ll(( + do_predicate_function_canonical(FP,F), + compound_name_list(Converted,FP,[RetResult]))). + +% If Convert is a number or an atom, it is considered as already converted. +f2p(_HeadIs,RetResult, Convert, RetResult = Convert) :- % HeadIs\=@=Convert, + once(number(Convert); atom(Convert); data_term(Convert)), % Check if Convert is a number or an atom + !. % Set RetResult to Convert as it is already in predicate form + +% If Convert is an "is" function, we convert it to the equivalent "is" predicate. +f2p(HeadIs,RetResult,is(Convert),(Converted,is(RetResult,Result))):- !, + must_det_ll((f2p(HeadIs,Result,Convert, Converted))). + +% If Convert is an "or" function, we convert it to the equivalent ";" (or) predicate. +f2p(HeadIs,RetResult,or(AsPredI,Convert), or(AsPredO, Converted)) :- !, + must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). +f2p(HeadIs,RetResult,(AsPredI; Convert), (AsPredO; Converted)) :- !, + must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). + +% If Convert is a "," (and) function, we convert it to the equivalent "," (and) predicate. +f2p(HeadIs,RetResult,(AsPredI, Convert), (AsPredO, Converted)) :- !, + must_det_ll((f2p(HeadIs,_RtResult,AsPredI, AsPredO), + f2p(HeadIs,RetResult,Convert, Converted))). + +% If Convert is a ":-" (if) function, we convert it to the equivalent ":-" (if) predicate. +f2p(_HeadIs,RetResult, Convert, Converted) :- Convert =(H:-B),!, + RetResult=(H:-B), Converted = true. + +f2p(_HeadIs,_RetResult, N=V, Code) :- !, into_equals(N,V,Code). + + +into_equals(RetResultL,RetResult,Equals):- into_u_assign(RetResultL,RetResult,Equals). +into_u_assign(RetResultL,RetResult,true):- is_ftVar(RetResultL), is_ftVar(RetResult), RetResult=RetResultL,!. +into_u_assign(RetResultL,RetResult,Code):- var(RetResultL), Code = u_assign(RetResult,RetResultL). +into_u_assign(RetResultL,RetResult,Code):- Code = u_assign(RetResultL,RetResult). + + + +% If Convert is a list, we convert it to its termified form and then proceed with the functs_to_preds conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- is_list(Convert), + once((sexpr_s2p(Convert,IS), \+ IS=@=Convert)), !, % Check if Convert is a list and not in predicate form + must_det_ll((f2p(HeadIs,RetResult, IS, Converted))). % Proceed with the conversion of the predicate form of the list. + +f2p(HeadIs,RetResult, ConvertL, Converted) :- is_list(ConvertL), + maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), + list_to_conjuncts(ConvertedL,Conjs), + into_u_assign(RetResultL,RetResult,Code), + combine_code(Conjs,Code,Converted). + + + +f2p(HeadIs,RetResultL, ConvertL, Converted) :- is_list(ConvertL), + ConvertL = [Convert], + f2p(HeadIs,RetResult,Convert, Code),!, + into_equals(RetResultL,[RetResult],Equals), + combine_code(Code,Equals,Converted). + + +% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert + % sub_term(AsFunction, Convert), AsFunction\==Convert, + callable(AsFunction), % Check if AsFunction is callable + compile_flow_control(HeadIs,Result,AsFunction, AsPred), + HeadIs\=@=AsFunction,!, + subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult,(AsPred,Converting), Converted). % Proceed with the conversion of the remaining terms + +% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert + callable(AsFunction), % Check if AsFunction is callable + is_function(AsFunction, Nth), % Check if AsFunction is a function and get the position Nth where the result is stored/retrieved + HeadIs\=@=AsFunction, + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred + subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms + +% If AsFunction is a recognized function, convert it to a predicate. +f2p(HeadIs,RetResult,AsFunction,AsPred):- % HeadIs\=@=AsFunction, + is_function(AsFunction, Nth), % Check if AsFunction is a recognized function and get the position Nth where the result is stored/retrieved + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, RetResult, Nth, AsPred), + \+ ( compound(AsFunction), arg(_,AsFunction, Arg), is_function(Arg,_)),!. + +% If any sub-term of Convert is an eval/2, convert that sub-term and then proceed with the conversion. +f2p(HeadIs,RetResult,Convert, Converted) :- + rev_sub_sterm0(ConvertFunction, Convert), % Get the deepest sub-term AsFunction of Convert + callable(ConvertFunction), % Check if AsFunction is callable + ConvertFunction = eval(AsFunction,Result), + ignore(is_function(AsFunction, Nth)), + funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred + subst(Convert, ConvertFunction, Result, Converting), % Substitute AsFunction by Result in Convert + f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms + +/* MAYBE USE ? +% If Convert is a compound term, we need to recursively convert its arguments. +f2p(HeadIs,RetResult, Convert, Converted) :- fail, + compound(Convert), !, + Convert =~ [Functor|Args], % Deconstruct Convert to functor and arguments + maplist(convert_argument, Args, ConvertedArgs), % Recursively convert each argument + Converted =~ [Functor|ConvertedArgs], % Reconstruct Converted with the converted arguments + (callable(Converted) -> f2p(HeadIs,RetResult, Converted, _); true). % If Converted is callable, proceed with its conversion +% Helper predicate to convert an argument of a compound term +convert_argument(Arg, ConvertedArg) :- + (callable(Arg) -> ftp(_, _, Arg, ConvertedArg); ConvertedArg = Arg). +*/ + +% The catch-all If no specific case is matched, consider Convert as already converted. +f2p(_HeadIs,_RetResult,u_assign(Convert,Res), u_assign(Convert,Res)):-!. +f2p(_HeadIs,RetResult,Convert, Code):- into_u_assign(Convert,RetResult,Code). + + + +data_term(Convert):- self_eval(Convert),!. + + +de_eval(eval(X),X):- compound(X),!. + +call1(G):- call(G). +call2(G):- call(G). +call3(G):- call(G). +call4(G):- call(G). +call5(G):- call(G). + +trace_break:- trace,break. + +u_assign(FList,R):- var(FList),nonvar(R), !, u_assign(R,FList). +u_assign(FList,R):- FList=@=R,!,FList=R. +u_assign(FList,R):- number(FList), var(R),!,R=FList. +u_assign(FList,R):- self_eval(FList), var(R),!,R=FList. +u_assign(FList,R):- var(FList),!,/*trace,*/freeze(FList,u_assign(FList,R)). +u_assign([V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(_Eq,V),!,maplist(eval_args,VI,VO). +u_assign((F:-List),R):- !, R = (F:-List). +u_assign(FList,R):- \+ compound(FList), var(R),!,R=FList. +u_assign([F|List],R):- F == ':-',!, trace_break,as_tf(clause(F,List),R). +u_assign([F|List],R):- atom(F),append(List,[R],ListR), + catch(quietly(apply(F,ListR)),error(existence_error(procedure,F/_),_), + catch(quietly(as_tf(apply(F,List),R)),error(existence_error(procedure,F/_),_), + quietly(catch(eval_args([F|List],R),_, R=[F|List])))),!. +u_assign(FList,RR):- iz_conz(FList),!,as_tf(FList,RR). +u_assign(FList,RR):- (compound_non_cons(FList),u_assign_c(FList,RR))*->true;FList=~RR. + +u_assign_c(FList,RR):- + functor(FList,F,_), + (catch(quietlY(call(FList,R)),error(existence_error(procedure,F/_),_), + catch(quietlY(as_tf(FList,R)),error(existence_error(procedure,F/_),_), + quietlY((p2m(FList,[F|List]),catch(eval_args([F|List],R),_, R=~[F|List])))))),!,R=RR. +u_assign_c(FList,R):- compound(FList), FList=~R. + +quietlY(G):- call(G). + +call_fr(G,Result,FA):- current_predicate(FA),!,call(G,Result). +call_fr(G,Result,_):- Result=G. + +% This predicate is responsible for converting functions to their equivalent predicates. +% It takes a function 'AsFunction' and determines the predicate 'AsPred' which will be +% equivalent to the given function, placing the result of the function at the 'Nth' position +% of the predicate arguments. The 'Result' will be used to store the result of the 'AsFunction'. +% +% It handles cases where 'AsFunction' is a variable and when it's an atom or a compound term. +% For compound terms, it decomposes them to get the functor and arguments and then reconstructs +% the equivalent predicate with the 'Result' at the 'Nth' position. +% +% Example: +% funct_with_result_is_nth_of_pred(HeadIs,+(1, 2), Result, 3, +(1, 2, Result)). + +into_callable(Pred,AsPred):- is_ftVar(Pred),!,AsPred=holds(Pred). +into_callable(Pred,AsPred):- Pred=AsPred,!. +into_callable(Pred,AsPred):- iz_conz(Pred), !,AsPred=holds(Pred). +into_callable(Pred,AsPred):- Pred=call_fr(_,_,_),!,AsPred=Pred. +into_callable(Pred,AsPred):- Pred =~ Cons, !,AsPred=holds(Cons). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + var(AsPred),!, + funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, Pred), + into_callable(Pred,AsPred). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + var(AsFunction),!, + funct_with_result_is_nth_of_pred0(HeadIs,Function, Result, Nth, AsPred), + into_callable(Function,AsFunction). + +funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- + funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). + +% Handles the case where AsFunction is a variable. +% It creates a compound term 'AsPred' and places the 'Result' at the 'Nth' position +% of the predicate arguments, and the 'AsFunction' represents the functional form with +% arguments excluding the result. +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, AsPred) :- + is_ftVar(AsFunction),!, + compound(AsPred), + compound_name_list(AsPred,FP,PredArgs), + nth1(Nth,PredArgs,Result,FuncArgs), + do_predicate_function_canonical(FP,F), + AsFunction =~ [F,FuncArgs]. + +% Handles the case where 'AsFunction' is not a variable. +% It decomposes 'AsFunction' to get the functor and arguments (FuncArgs) of the function +% and then it constructs the equivalent predicate 'AsPred' with 'Result' at the 'Nth' +% position of the predicate arguments. +funct_with_result_is_nth_of_pred0(HeadIs,AsFunctionO, Result, Nth, (AsPred)) :- + de_eval(AsFunctionO,AsFunction),!,funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). + +funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, _Nth, AsPred) :- + nonvar(AsFunction), + compound(AsFunction), + \+ is_arity_0(AsFunction,_), + functor(AsFunction,F,A), + HeadIs\=@=AsFunction, + \+ (compound(HeadIs), (is_arity_0(HeadIs,HF);functor(HeadIs,HF,_))-> HF==F), + (into_u_assign(AsFunction, Result,AsPred) + -> true + ; (AA is A+1, + (FAA=(F/AA)), + \+ current_predicate(FAA), !, + AsPred = call_fr(AsFunction,Result,FAA))). + + +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- + (atom(AsFunction)->AsFunction =~ [F | FuncArgs]; compound_name_list(AsFunction,F,FuncArgs)), + ignore(var(Nth) -> is_function(AsFunction,Nth); true), + nth1(Nth, PredArgs, Result, FuncArgs), % It places 'Result' at the 'Nth' position + AA is Nth+1, \+ current_predicate(F/AA), + do_predicate_function_canonical(FP,F), + AsPred =~ [FP | PredArgs]. % It forms the predicate 'AsPred' by joining the functor with the modified arguments list. + + + +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- + nonvar(AsFunction), + AsFunction =~ [F | FuncArgs], + do_predicate_function_canonical(FP,F), + length(FuncArgs, Len), + ignore(var(Nth) -> is_function(AsFunction,Nth); true), + ((number(Nth),Nth > Len + 1) -> throw(error(index_out_of_bounds, _)); true), + (var(Nth)->(between(1,Len,From1),Nth is Len-From1+1);true), + nth1(Nth,PredArgs,Result,FuncArgs), + AsPred =~ [FP | PredArgs]. + +% optionally remove next line +funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, _, _, _) :- + var(AsFunction), + throw(error(instantiation_error, _)). + +% The remove_funct_arg/3 predicate is a utility predicate that removes +% the Nth argument from a predicate term, effectively converting a +% predicate to a function. The first argument is the input predicate term, +% the second is the position of the argument to be removed, and the third +% is the output function term. +remove_funct_arg(AsPred, Nth, AsFunction) :- + % Decompose AsPred into its functor and arguments. + AsPred =~ [F | PredArgs], + % Remove the Nth element from PredArgs, getting the list FuncArgs. + nth1(Nth,PredArgs,_Result,FuncArgs), + % Construct AsFunction using the functor and the list FuncArgs. + do_predicate_function_canonical(F,FF), + compound_name_list(AsFunction,FF,FuncArgs). + +% rev_sub_sterm/2 predicate traverses through a given Term +% and finds a sub-term within it. The sub-term is unifiable with ST. +% This is a helper predicate used in conjunction with others to inspect +% and transform terms. + +rev_sub_sterm(ST, Term):- rev_sub_sterm0(ST, Term), ST\=@=Term. +rev_sub_sterm0(_, Term):- never_subterm(Term),!,fail. +rev_sub_sterm0(ST, Term):- Term =~ if(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'if-error'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'if-decons'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). +rev_sub_sterm0(ST, Term):- Term =~ 'chain'(Expr,_Var,_Next),!,rev_sub_sterm0(ST, Expr). +rev_sub_sterm0(ST, Term):- + % If Term is a list, it reverses the list and searches for a member + % in the reversed list that is unifiable with ST. + is_list(Term),!,rev_member(E,Term),rev_sub_sterm0(ST, E). +rev_sub_sterm0(ST, Term):- + % If Term is a compound term, it gets its arguments and then recursively + % searches in those arguments for a sub-term unifiable with ST. + compound(Term), compound_name_list(Term,_,Args),rev_sub_sterm0(ST, Args). +rev_sub_sterm0(ST, ST):- + % If ST is non-var, not an empty list, and callable, it unifies + % ST with Term if it is unifiable. + nonvar(ST), ST\==[], callable(ST). + +never_subterm(Term):- is_ftVar(Term). +never_subterm([]). +never_subterm('Nil'). +%never_subterm(F):- atom(F),not_function(F,0). + +% rev_member/2 predicate is a helper predicate used to find a member +% of a list. It is primarily used within rev_sub_sterm/2 to +% traverse through lists and find sub-terms. It traverses the list +% from the end to the beginning, reversing the order of traversal. +rev_member(E,[_|L]):- rev_member(E,L). +rev_member(E,[E|_]). + +% Continuing from preds_to_functs/2 +% Converts a given predicate representation to its equivalent function representation +preds_to_functs(Convert, Converted):- + % Verbose_unify/1 here may be used for debugging or to display detailed unification information + verbose_unify(Convert), + % Calls the auxiliary predicate preds_to_functs0/2 to perform the actual conversion + preds_to_functs0(Convert, Converted). + +% if Convert is a variable, Converted will be the same variable +preds_to_functs0(Convert, Converted) :- + is_ftVar(Convert), !, + Converted = Convert. + +% Converts the rule (Head :- Body) to its function equivalent +preds_to_functs0((Head:-Body), Converted) :- !, + % The rule is converted by transforming Head to a function AsFunction and the Body to ConvertedBody + ( + pred_to_funct(Head, AsFunction, Result), + %ignore(Result = '$VAR'('HeadRes')), + conjuncts_to_list(Body,List), + reverse(List,RevList),append(Left,[BE|Right],RevList), + compound(BE),arg(Nth,BE,ArgRes),sub_var(Result,ArgRes), + remove_funct_arg(BE, Nth, AsBodyFunction), + append(Left,[eval(AsBodyFunction,Result)|Right],NewRevList), + reverse(NewRevList,NewList), + list_to_conjuncts(NewList,NewBody), + preds_to_functs0(NewBody,ConvertedBody), + % The final Converted term is constructed + into_equals(AsFunction,ConvertedBody,Converted)). + +% Handles the case where Convert is a conjunction, and AsPred is not not_function. +% It converts predicates to functions inside a conjunction +preds_to_functs0((AsPred, Convert), Converted) :- + \+ not_function(AsPred), + pred_to_funct(AsPred, AsFunction, Result), + sub_var(Result, Convert), !, + % The function equivalent of AsPred replaces Result in Convert + subst(Convert, Result, AsFunction, Converting), + preds_to_functs0(Converting, Converted). + +% Handles the special case where eval/2 is used and returns the function represented by the first argument of eval/2 +preds_to_functs0(eval(AsFunction, _Result), AsFunction) :- !. + +% Handles the general case where Convert is a conjunction. +% It converts the predicates to functions inside a conjunction +preds_to_functs0((AsPred, Converting), (AsPred, Converted)) :- !, + preds_to_functs0(Converting, Converted). + +% Handles the case where AsPred is a compound term that can be converted to a function +preds_to_functs0(AsPred, eval(AsFunction, Result)) :- + pred_to_funct(AsPred, AsFunction, Result), !. + +% any other term remains unchanged +preds_to_functs0(X, X). + +% Converts a given predicate AsPred to its equivalent function term AsFunction +pred_to_funct(AsPred, AsFunction, Result) :- + compound(AsPred), % Checks if AsPred is a compound term + functor(AsPred, F, A), % Retrieves the functor F and arity A of AsPred + functional_predicate_arg(F, A, Nth),!, % Finds the Nth argument where the result should be + arg(Nth, AsPred, Result), % Retrieves the result from the Nth argument of AsPred + remove_funct_arg(AsPred, Nth, AsFunction). % Constructs the function AsFunction by removing the Nth argument from AsPred + +% If not found in functional_predicate_arg/3, it tries to construct AsFunction by removing the last argument from AsPred +pred_to_funct(AsPred, AsFunction, Result) :- + compound(AsPred), !, + functor(AsPred, _, Nth), + arg(Nth, AsPred, Result), + remove_funct_arg(AsPred, Nth, AsFunction). + +% body_member/4 is utility predicate to handle manipulation of body elements in the clause, but the exact implementation details and usage are not provided in the given code. +body_member(Body,BE,NewBE,NewBody):- + conjuncts_to_list(Body,List), + reverse(List,RevList),append(Left,[BE|Right],RevList), + append(Left,[NewBE|Right],NewRevList), + reverse(NewRevList,NewList), + list_to_conjuncts(NewList,NewBody). +% combine_clauses/3 is the main predicate combining clauses with similar heads and bodies. +% HeadBodiesList is a list of clauses (Head:-Body) +% NewHead will be the generalized head representing all clauses in HeadBodiesList +% NewCombinedBodies will be the combined bodies of all clauses in HeadBodiesList. +combine_clauses(HeadBodiesList, NewHead, NewCombinedBodies) :- + % If HeadBodiesList is empty, then NewCombinedBodies is 'false' and NewHead is an anonymous variable. + (HeadBodiesList = [] -> NewCombinedBodies = false, NewHead = _ ; + % Find all Heads in HeadBodiesList and collect them in the list Heads + findall(Head, member((Head:-_), HeadBodiesList), Heads), + % Find the least general head among the collected Heads + least_general_head(Heads, LeastHead), + functor(LeastHead,F,A),functor(NewHead,F,A), + % Transform and combine bodies according to the new head found + transform_and_combine_bodies(HeadBodiesList, NewHead, NewCombinedBodies)), + \+ \+ ( + Print=[converting=HeadBodiesList,newHead=NewHead], + numbervars(Print,0,_,[]),fbug(Print),in_cmt(portray_clause(( NewHead :- NewCombinedBodies)))),!. + +% Predicate to find the least general unified head (LGU) among the given list of heads. +% Heads is a list of head terms, and LeastGeneralHead is the least general term that unifies all terms in Heads. +least_general_head(Heads, LeastGeneralHead) :- + lgu(Heads, LeastGeneralHead). + +% the LGU of a single head is the head itself. +lgu([Head], Head) :- !. +% find the LGU of the head and the rest of the list. +lgu([H1|T], LGU) :- + lgu(T, TempLGU), + % Find generalization between head H1 and temporary LGU + generalization(H1, TempLGU, LGU). + +% generalization/3 finds the generalization of two heads, Head1 and Head2, which is represented by GeneralizedHead. +% This predicate is conceptual and will require more complex processing depending on the actual structures of the heads. +generalization(Head1, Head2, GeneralizedHead) :- + % Ensure the functor names and arities are the same between Head1 and Head2. + functor(Head1, Name, Arity), + functor(Head2, Name, Arity), + functor(GeneralizedHead, Name, Arity), + % Generalize the arguments of the heads. + generalize_args(Arity, Head1, Head2, GeneralizedHead). + +% no more arguments to generalize. +generalize_args(0, _, _, _) :- !. +% generalize the corresponding arguments of the heads. +generalize_args(N, Head1, Head2, GeneralizedHead) :- + arg(N, Head1, Arg1), + arg(N, Head2, Arg2), + % If the corresponding arguments are equal, use them. Otherwise, create a new variable. + (Arg1 = Arg2 -> arg(N, GeneralizedHead, Arg1); arg(N, GeneralizedHead, _)), + % Continue with the next argument. + N1 is N - 1, + generalize_args(N1, Head1, Head2, GeneralizedHead). + +% transform_and_combine_bodies/3 takes a list of clause heads and bodies, a new head, and produces a combined body representing all the original bodies. +% The new body is created according to the transformations required by the new head. +transform_and_combine_bodies([(Head:-Body)|T], NewHead, CombinedBodies) :- + % Transform the body according to the new head. + transform(Head, NewHead, Body, TransformedBody), + % Combine the transformed body with the rest. + combine_bodies(T, NewHead, TransformedBody, CombinedBodies). + +/* OLD +% Define predicate combine_clauses to merge multiple Prolog clauses with the same head. +% It receives a list of clauses as input and returns a combined clause. +combine_clauses([Clause], Clause) :- !. % If there's only one clause, return it as is. +combine_clauses(Clauses, (Head :- Body)) :- % If there are multiple clauses, combine them. + Clauses = [(Head :- FirstBody)|RestClauses], % Decompose the list into the first clause and the rest. + combine_bodies(RestClauses, FirstBody, Body). % Combine the bodies of all the clauses. + +% Helper predicate to combine the bodies of a list of clauses. +% The base case is when there are no more clauses to combine; the combined body is the current body. +combine_bodies([], Body, Body). +combine_bodies([(Head :- CurrentBody)|RestClauses], PrevBody, Body) :- + % Combine the current body with the previous body using a conjunction (,). + combine_two_bodies(PrevBody, CurrentBody, CombinedBody), + % Recursively combine the rest of the bodies. + combine_bodies(RestClauses, CombinedBody, Body). + +% Predicate to combine two bodies. +% Handles the combination of different Prolog constructs like conjunctions, disjunctions, etc. +combine_two_bodies((A, B), (C, D), (A, B, C, D)) :- !. % Combine conjunctions. +combine_two_bodies((A; B), (C; D), (A; B; C; D)) :- !. % Combine disjunctions. +combine_two_bodies(A, B, (A, B)). % Combine simple terms using conjunction. +*/ + +% if there are no more bodies, the accumulated Combined is the final CombinedBodies. +combine_bodies([], _, Combined, Combined). +% combine the transformed body with the accumulated bodies. +combine_bodies([(Head:-Body)|T], NewHead, Acc, CombinedBodies) :- + transform(Head, NewHead, Body, TransformedBody), + % Create a disjunction between the accumulated bodies and the transformed body. + NewAcc = (Acc;TransformedBody), + combine_bodies(T, NewHead, NewAcc, CombinedBodies). + +% combine_code/3 combines Guard and Body to produce either Guard, Body, or a conjunction of both, depending on the values of Guard and Body. +combine_code(Guard, Body, Guard) :- Body==true, !. +combine_code(Guard, Body, Body) :- Guard==true, !. +combine_code(Guard, Body, (Guard, Body)). + +% create_unifier/3 creates a unification code that unifies OneHead with NewHead. +% If OneHead and NewHead are structurally equal, then they are unified and the unification Guard is 'true'. +% Otherwise, the unification code is 'metta_unify(OneHead,NewHead)'. + +create_unifier(OneHead,NewHead,Guard):- OneHead=@=NewHead,OneHead=NewHead,!,Guard=true. +create_unifier(OneHead,NewHead,Guard):- compound(OneHead), + compound_name_list(OneHead,_,Args1), + compound_name_list(NewHead,_,Args2), + create_unifier_goals(Args1,Args2,Guard),!. +create_unifier(OneHead,NewHead,u(OneHead,NewHead)). + +create_unifier_goals([V1],[V2],u(V1,V2)):-!. +create_unifier_goals([V1|Args1],[V2|Args2],RightGuard):-!, + create_unifier_goals(Args1,Args2,Guard), + combine_code(u(V1,V2),Guard,RightGuard). +create_unifier_goals([],[],true). + + +% transform/4 combines unification code with Body to produce NewBody according to the transformations required by NewHead. +% It uses create_unifier/3 to generate the unification code between OneHead and NewHead. +transform(OneHead, NewHead, Body, NewBody):- create_unifier(OneHead,NewHead,Guard), + combine_code(Guard,Body,NewBody). + + + + +% =============================== +% Compile in memory buffer +% =============================== + +add_assertion(NewAssertion) :- + expand_to_hb(NewAssertion,H,_), + functor(H,F,A), functor(HH,F,A), + assert(NewAssertion), + % Get the current clauses of my_predicate/1 + findall(HH:-B,clause(HH,B),Prev), + % Create a temporary file and add the new assertion along with existing clauses + abolish(F/A), + create_and_consult_temp_file(F/A, Prev). + +% Predicate to create a temporary file and write the tabled predicate +create_and_consult_temp_file(PredName/Arity, PredClauses) :- + % Generate a unique temporary memory buffer + tmp_file_stream(text, TempFileName, TempFileStream), + % Write the tabled predicate to the temporary file + format(TempFileStream, ':- multifile((~q)/~w).~n', [PredName, Arity]), + format(TempFileStream, ':- dynamic((~q)/~w).~n', [PredName, Arity]), + %if_t( \+ option_value('tabling',false), + if_t(option_value('tabling',true),format(TempFileStream,':- ~q.~n',[table(PredName/Arity)])), + maplist(write_clause(TempFileStream), PredClauses), + % Close the temporary file + close(TempFileStream), + % Consult the temporary file + consult(TempFileName), + % Delete the temporary file after consulting + delete_file(TempFileName), + assert(metta_compiled_predicate(PredName,Arity)). + +% Helper predicate to write a clause to the file +write_clause(Stream, Clause) :- + subst_vars(Clause,Can), + write_canonical(Stream, Can), + write(Stream, '.'), + nl(Stream). + + diff --git a/metta_vspace/pyswip-want/metta_convert.pl b/metta_vspace/pyswip-want/metta_convert.pl new file mode 100755 index 00000000..5a7feb74 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_convert.pl @@ -0,0 +1,319 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +:- op(700,xfx,'=~'). + +% =============================== +% TESTING +% =============================== +% Define 'fb', a rule that calls 'make' and writes information for each clause of 'fb0'. +% 'make' compiles the program. +% The 'forall' loop will write and call all goals of the 'fb0' clauses. + + +fb:- make, + writeln(';; ==========================================='), + forall((clause(fb0,Goal),write(';; '),writeq(?- Goal),nl,call(Goal)), + writeln(';; ===========================================')). + +% The 'fb0' rule showing mettalog sources with specific definitions. +fb0:- show_mettalog_src((two_pi(R):-(pi(A), +(A, A, B), R is B))). +fb0:- show_mettalog_src(factorial_tail_basic). +fb0:- show_mettalog_src(funct). + +print_metta_src :- show_mettalog_src. +% 'show_mettalog_src' rule compiles the program and shows mettalog sources for each source file containing 'metta'. +show_mettalog_src:- make, + forall((source_file(AsPred,File), + symbol_contains(File,metta)), + show_mettalog_src(AsPred)). + + +% Handling different cases for 'show_mettalog_src' with different input parameters. +% These rules use nonvar, current_predicate, and other built-ins to perform various checks and actions +% based on the type and value of the input to 'show_mettalog_src'. +show_mettalog_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). +show_mettalog_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_mettalog_src(F,A)). +show_mettalog_src(C):- show_cvts(C),!. + +% The 'show_space_src' rules compile the program and show space sources for each space predicate. +show_space_src:- make, + forall(space_preds(AsPred),show_space_src(AsPred)). + + +% Similar to the 'show_mettalog_src' rules, these rules handle different cases for 'show_space_src' +% with different input parameters and perform various checks and actions based on the type and value of the input. +show_space_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_space_src(F,A)). +show_space_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_space_src(F,A)). +show_space_src(C):- show_cvts(C),!. + +% 'show_cvts' rule processes a term, performing different actions based on the structure of the term. +show_cvts(Term):- + once((is_list(Term), sexpr_s2p(Term,PF))), \+ is_list(PF),!,show_cvts(PF). + +% 'show_cvts' continues processing, performing conversions between predicates and functions, +% and pretty-printing original terms, function forms, and Prolog forms. +show_cvts(Term):- iz_conz(Term),!, ppc(orig,Term),Term = FunctForm, + functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog), + preds_to_functs(Prolog,NFunctForm), ppc(functs,NFunctForm). +show_cvts(Term):- ppc(orig,Term), + preds_to_functs(Term,FunctForm), ppc(functs,FunctForm), + functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog). + +% 'show_mettalog_src' for specific predicate, prints metta clauses if they exist in the source file containing 'metta'. +show_mettalog_src(F,A):- functor(Head,F,A), + ignore((predicate_property(Head,number_of_clauses(_)), + source_file(Head,File),atom_contains(File,metta),!, + nl,findall((Head:-Body), + clause(Head,Body), Clauses), + print_metta_clauses(Clauses))),nl. + +% 'print_metta_clauses' rule is handling the printing of metta clauses. +% It checks the form of the input clauses and calls 'print_metta_clause' accordingly. +print_metta_clauses([]):- !. +print_metta_clauses([Head:-Body]):- !, print_metta_clause(Head,Body). +print_metta_clauses(Clauses):- combine_clauses(Clauses,Head,Body),!,print_metta_clause(Head,Body). +print_metta_clause(Head,Body):- + print_metta_clause0(Head,Body), + show_cvts(Head:-Body). + +% 'print_metta_clause0' rule prints metta clauses based on the body. +% It transforms the body to a list, if needed, and prints it in a sequential form. +print_metta_clause0(Head,Body):- Body == true,!, pp_metta([=,Head,'True']). +print_metta_clause0(Head,Body):- Body == false,!, pp_metta([=,Head,'False']). +print_metta_clause0(Head,Body):- conjuncts_to_list(Body,List), into_sequential(List,SP), pp_metta([=,Head,SP]). + + + +% ========================================= +% STERM -> PTERM +% ========================================= + +iz_exact_symbol(N,_):- \+ atom(N),!,fail. +iz_exact_symbol(N,P):- nonvar(P),!,iz_exact_symbol(N,PP),zalwayz(P=PP). +iz_exact_symbol(':-',':-'). +iz_exact_symbol('?-','?-'). +iz_exact_symbol('??',_). + +%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). + +maybe_varz(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. + +%% sexpr_s2p(Fn,?VAR, ?V) is det. +% +% S-expression Sterm Converted To Pterm. +% +sexpr_s2p(HB,P):- fail, compound(HB), HB=~ (H=B), compile_for_assert(H,B,Cl), + clause_to_code(Cl,P),!. +sexpr_s2p(S,P):- sexpr_s2p(progn,1,S,P). + + +clause_to_code(P,P):- is_ftVar(P),!. +%clause_to_code(P:-True,P):- True == true,!. +clause_to_code((H:-B),P):- B==true, !, combine_code(B,H,P). +clause_to_code(P,P). + +sexpr_s2p(_Fn,_Nth,VAR,VAR):-is_ftVar(VAR),!. +sexpr_s2p(_Fn,_Nth,S,P):- iz_exact_symbol(S,P),!. +sexpr_s2p(_Fn,_Nth,'#'(S),P):- iz_exact_symbol(S,P),!. +sexpr_s2p(_Fn,_Nth,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. +sexpr_s2p(Fn,Nth,S,P):- S==[], iz_fun_argz(Fn,Nth),!,P=S. + +sexpr_s2p(Fn,Nth,S,P):- expects_type(Fn,Nth,Type),will_become_type(Type,S,P),!. + +sexpr_s2p(_Fn,_Nth,[F|SList],P):- is_list(SList), length(SList,Len),is_syspred(F,Len,Pred), sexpr_s2p_arglist(F,1,SList,PList), !, P=..[Pred|PList]. +:- style_check(-singleton). + +sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- iz_fun_argz(Fn,Nth),!,sexpr_s2p(S,P), sexpr_s2p(Fn,Nth,SList,PList). +sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- ( \+ atom(S) ; \+ is_list(SList)), !,sexpr_s2p(list(Fn),Nth,S,P), sexpr_s2p(list(Fn),Nth,SList,PList). +sexpr_s2p(_Fn,_Nth,[S,STERM0],PTERM):- iz_quoter(S),sexpr_s2p_pre_list(S,0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_s2p(_Fn,_Nth,[S|SList],P):- atom(S), SList == [], compound_name_arity(P,S,0). +% sexpr_s2p(Fn,Nth,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_varz(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_s2p(Fn,Nth,NewList,PTERM). +% sexpr_s2p(Fn,Nth,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- \+ atom(S),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +/* +sexpr_s2p(Fn,Nth,[S,Vars|TERM],PTERM):- nonvar(S), + call_if_defined(common_logic_snark:iz_quantifier(S)), + zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST), + PTERM =~ [S,Vars|PLIST])),!. +*/ +% sexpr_s2p(progn,_,[S|TERM],PTERM):- S==AND,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. +%sexpr_s2p(Fn,Nth,[S],O):- is_ftVar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. +%sexpr_s2p(Fn,Nth,[S],O):- nonvar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- S==and,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +% sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_va_relation(S),!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). +%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_relation_sexpr(S),zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),PTERM =~ [S|PLIST])),!. +%sexpr_s2p(Fn,Nth,STERM,PTERM):- STERM =~ [S|TERM],sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),z_univ(Fn,Nth,PTERM,[S|PLIST]),!. +sexpr_s2p(Fn,Nth,[S|STERM0],PTERM):- + sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM), + sexpr_s2p_arglist(S,1,STERM,PLIST), z_univ(Fn,Nth,PTERM,[S|PLIST]),!. +sexpr_s2p(_Fn,_Nth,VAR,VAR). + + +expects_type(Fn,Nth,Type):- + get_operator_typedef(Self,Fn,Params,RetType), + nth0(Nth,[RetType|Params],Type),nonvar(Type). + +will_become_type(Type,S,P):- try_adjust_arg_types(=,_RetType,88,_Self,[Type],[S],[PS]),PS=P,!. +will_become_type(Type,S,P):- is_ftVar(S),!,P=S. +will_become_type(Type,S,P):- + get_type(S,T),!, + (is_subtype(T,Type)->S=P; P=coerce(Type,S)). +will_become_type(_Type,S,P):-!,S=P. + +is_subtype(T,TT):- T=@=TT,!,T=TT. +is_subtype(T,TT):- T=TT,!. + +iz_quoter('#BQ'):- iz_common_lisp. +iz_quoter('#COMMA'):- iz_common_lisp. +iz_quoter('quote'). +iz_quoter(superpose). + +iz_fun_argz(list(_),_). +iz_fun_argz(defmacro,2). +iz_fun_argz(defun,2). +iz_fun_argz(let,1). +iz_fun_argz('let*',1). +iz_fun_argz('member',2). +%iz_fun_argz('let*',2). +iz_fun_argz(F,1):- iz_quoter(F). + +z_functor(F):- \+ atom(F), !,fail. +z_functor(F):- \+ atom_concat('?',_,F). +z_functor(F):- \+ atom_concat('$',_,F). + +%z_univ(_Fn,1,S,S):-!. +z_univ(_Fn,_,P,[F|ARGS]):- z_functor(F),is_list(ARGS),length(ARGS,A),l_arity_l(F,A),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,0,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,_Nth,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. +z_univ(_Fn,_Nth,P,S):-P=S. + +l_arity_l(F,A):- clause_b(arity(F,A)). +l_arity_l(function,1). +l_arity_l(quote,1). +l_arity_l('#BQ',1):- iz_common_lisp. +l_arity_l(F,A):-current_predicate(F/A). +l_arity_l(_,1). + +sexpr_s2p_arglist(_Fn,_,VAR,VAR):-is_ftVar(VAR),!. +sexpr_s2p_arglist(Fn,Nth,[S|SList],[P|PList]):-sexpr_s2p(Fn,Nth,S,P), + (Nth>0->Nth2 is Nth+1;Nth2=0),sexpr_s2p_arglist(Fn,Nth2,SList,PList),!. +sexpr_s2p_arglist(Fn,Nth,S,P):-sexpr_s2p(Fn,Nth,S,P),!. +sexpr_s2p_arglist(_Fn,_Nth,VAR,VAR). + +sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ compound(STERM), !. +sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ is_list(STERM), !. +% sexpr_s2p_pre_list(Fn,_,[S|STERM],[S|STERM]):- STERM == [], !. +sexpr_s2p_pre_list(Fn,Nth,[S0|STERM0],[S|STERM]):- + (is_list(S0)->sexpr_s2p(Fn,Nth,S0,S);sexpr_s2p_pre_list(Fn,Nth,S0,S)), + sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM),!. +sexpr_s2p_pre_list(_Fn,_,STERM,STERM). + + + + +% p2m/2 is a translation utility to convert Prolog constructs to MeTTa constructs. +% It handles a variety of cases, including different types of compound terms, +% control structures, and predicate definitions. +% The first argument is the input in Prolog syntax, +% and the second argument is the output converted to MeTTa syntax. + + +p2m(NC, NC) :- var(NC), !. % If NC is a variable, do not translate. +p2m(NC, NC) :- is_ftVar(NC), !. % If NC is a free term variable, do not translate. +% Conversion for lists +p2m([], 'Nil'). % empty list +p2m([H|T], 'Cons'(OH, OT)):- p2m(H, OH), p2m(T, OT). +p2m(NC, OO) :- + % If NC is a list, map each element of the list from Prolog to MeTTa + is_list(NC),!, + maplist(p2m, NC, OO). +p2m(!, '!'). % Translate the cut operation directly. +p2m(false, 'False'). +p2m(fail, 'False'). % Translate Prolog’s fail to MeTTa’s False. +p2m(true, 'True'). % Translate Prolog’s true to MeTTa’s True. +p2m(prolog, meTTa). % Translate the atom prolog to meTTa. + +p2m('[|]','Cons'). +p2m(( ';' ),or). +%p2m(( ',' ),and). +%p2m(( '\\+' ),unless). +%p2m(( ':-' ),entailed_by). +p2m('=..','atom_2_list'). + +% Conversion for any atomic term +p2m(A, A):- atomic(A). + +p2m(NC,NC):- \+ compound(NC),!. +p2m(NC,[F]):- compound_name_arity(NC,F,0),!. + +% Conversion for the negation as failure +p2m((\+ A), O):- !, p2m(not(A), O). + +p2m((G,E),O):- conjuncts_to_list((G,E),List),!,into_sequential(List,O),!. + +% Conversion for arithmetic evaluation +%p2m(is(A, B), O):- !, p2m(eval(B, A), O). +%p2m(is(V,Expr),let(V,Expr,'True')). +p2m((Head:-Body),O):- Body == true,!, O = (=(Head,'True')). +p2m((Head:-Body),O):- Body == fail,!, O = (=(Head,'False')). +p2m((Head:-Body),O):- conjuncts_to_list(Body,List),into_sequential(List,SP),!,O=(=(Head,SP)). + +% Conversion for if-then-else constructs +p2m((A->B;C),O):- !, p2m(if_then_else(A,B,C),O). +p2m((A;B),O):- !, p2m(or(A,B),O). +p2m((A*->B;C),O):- !, p2m(each_then_otherwise(A,B,C),O). +p2m((A->B),O):- !, p2m(if_then(A,B),O). +p2m((A*->B),O):- !, p2m(each_then(A,B),O). +p2m(metta_defn(Eq,Self,H,B),'add-atom'(Self,[Eq,H,B])). +p2m(metta_type,'add-atom'). +p2m(get_metta_atom,'add-atom'). +p2m(retractall(X),'remove-all-atoms'('&self',X)). +p2m(clause(H,B),'get-atoms'('&self',[=,H,B])). +p2m(retract(X),'remove-atom'('&self',X)). +p2m(assert(X),'add-atom'('&self',X)). +% The catch-all case for the other compound terms. +p2m(I,O):- I=..[F|II],maplist(p2m,[F|II],OO),O=..OO. + +% It will break down compound terms into their functor and arguments and apply p2m recursively +p2m(I, O):- + compound(I), + I =.. [F|II], % univ operator to convert between a term and a list consisting of functor name and arguments + maplist(p2m, II, OO), % applying p2m recursively on each argument of the compound term + sexpr_s2p([F|OO],O). % constructing the output term with the converted arguments + +% In the context of this conversion predicate, each branch of the p2m predicate +% is handling a different type or structure of term, translating it into its +% equivalent representation in another logic programming language named MeTTa. +% The actual transformations are dependent on the correspondence between Prolog +% constructs and MeTTa constructs, as defined by the specific implementations +% of Prolog and MeTTa being used. +prolog_to_metta(V, D) :- + % Perform the translation from Prolog to MeTTa + p2m(V, D),!. + + +% Define predicates to support the transformation from Prolog to MeTTa syntax +% (Continuing the translation from Prolog to MeTTa syntax as per the given code) +% Handle the case where the body is a conjunction of terms +into_sequential(Body, SP) :- + % Check if Body is not a list and convert conjunctions in Body to a list of conjuncts. + \+ is_list(Body), + conjuncts_to_list(Body, List), + is_list(List), % Converts a list of conjunctions into a sequential representation in MeTTa + into_sequential(List, SP), !. +into_sequential(Nothing,'True'):- Nothing ==[],!. + % If there's only one element +into_sequential([SP],O):- prolog_to_metta(SP,O). +% Otherwise, construct sequential representation using AND. +into_sequential(List, [AND|SPList]) :- is_compiled_and(AND), maplist(prolog_to_metta, List, SPList),!. + + + + + diff --git a/metta_vspace/pyswip-want/metta_data.pl b/metta_vspace/pyswip-want/metta_data.pl new file mode 100755 index 00000000..48a9c382 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_data.pl @@ -0,0 +1,1199 @@ + +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). + +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'-p',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'-fn',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. +%is_function(F):- atom(F). +is_metta_data_functor(Eq,F):- !, fail, + current_self(Self),is_metta_data_functor(Eq,Self,F). + +is_metta_data_functor(_Othr,H):- clause(is_data_functor(H),_). +is_metta_data_functor(Other,H):- H\=='Right', H\=='Something', + % metta_type(Other,H,_), % fail, + \+ metta_atom(Other,[H|_]), + \+ metta_defn(Other,[H|_],_), + \+ is_metta_builtin(H), + \+ is_comp_op(H,_), + \+ is_math_op(H,_,_). +is_metta_data_functor(_Eq,_Othr,H):- clause(is_data_functor(H),_). +is_metta_data_functor(Eq,Other,H):- H\=='Right', H\=='Something', + % metta_type(Other,H,_), % fail, + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_), + \+ is_metta_builtin(H), + \+ is_comp_op(H,_), + \+ is_math_op(H,_,_). + + +:- if( \+ current_predicate(mnotrace/1) ). + mnotrace(G):- once(G). +:- endif. + + +is_decl_type(ST):- dif(Arrow,'->'),Type=[Arrow|_],metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). +is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). +is_decl_type(ST):- \+ atom(ST),!,fail. +is_decl_type('%Undefined%'). is_decl_type('Number'). +is_decl_type('String'). is_decl_type('Bool'). +is_decl_type('Type'). is_decl_type('Symbol'). +is_decl_type('Expression'). +is_decl_type('Any'). is_decl_type('Atom'). +is_decl_type(Type):- is_decl_type_l(Type). +is_decl_type_l('StateMonad'). is_decl_type_l('List'). + + +last_type(List,Type):- is_list(List),last(List,Type),is_type(Type). +last_type(Type,Type):- is_type(Type),!. + +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval(EvalMe):- is_list(EvalMe),!. + + +args_violation(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !, fail. +args_violation(Depth,Self,[A|Args],[L|List]):- once(arg_violation(Depth,Self,A,L) ; args_violation(Depth,Self,Args,List)). +arg_violation(Depth,Self,A,L):- \+ (get_type0(false,Depth,Self,A,T), \+ type_violation(T,L)). +%arg_violation(Depth,Self,A,_):- get_type(false,Depth,Self,A,_),!. + +type_violation(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!,fail. +type_violation(T,L):- T\=L. + + +not_arg_violation(Depth,Self,Arg,Type):- + \+ arg_violation(Depth,Self,Arg,Type), + arg_conform(Depth,Self,Arg,Type). + +args_conform(_,_,I,O):- I==[],!,O=I. +args_conform(_Dpth,_Slf,Args,ParamTypes):- ( \+ iz_conz(Args); \+ iz_conz(ParamTypes)), !. +args_conform(Depth,Self,[A|Args],[TypeSought|ParamTypes]):- arg_conform(Depth,Self,A,TypeSought) , args_conform(Depth,Self,Args,ParamTypes). +arg_conform(Depth,Self,Var,TypeSought):- var(Var),!,set_type(Depth,Self,Var,TypeSought),!. +arg_conform(Depth,Self,A,TypeSought):- get_type(false,Depth,Self,A,ArgType), type_conform(ArgType,TypeSought),!. +%arg_conform(_Dpth,_Slf,_,_). +%arg_conform(Depth,Self,A,_):- get_type(false,Depth,Self,A,_),!. + +type_conform(T,L):- T=L,!. +type_conform(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!. + +is_nonspecific_type(Var):- var(Var),!. +is_nonspecific_type('%Undefined%'). +is_nonspecific_type([]). +is_nonspecific_type('Atom'). +is_nonspecific_type('Any'). + +%get_type(false,Depth,Self,Val,Type):- get_type01(false,Depth,Self,Val,Type). +get_type(IsMT,Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(IsMT,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. +get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(false,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. +get_metatype(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(true,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. + + + +get_type9(false,_Dpth,_Slf, Val,Type):- var(Val),get_attr(Val,metta_vtype,Args),!,arg(3,Args,Type). +get_type9(IsMT,Depth,Self,Val,Type):- get_type0(IsMT,Depth,Self,Val,Type). +get_type9(IsMT,Depth,Self,Val,Type):- get_type1(IsMT,Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. +get_type9(IsMT,Depth,Self,Val,Type):- get_type2(IsMT,Depth,Self,Val,Type), ( is_list(Type)->! ; true). +get_type9(false,_Dpth,_Slf,_Vl,[]). + +get_type2(false,Depth,_Slf,Type,Type):- Depth<1,!. +%get_type(false,Depth,Self,Val,Type):- is_debugging(eval), !, +% ftrace(get_type0(false,Depth,Self,Val,Type)). +get_type2(IsMT,Depth,Self,Val,Type):- get_type0(IsMT,Depth,Self,Val,Type). +get_type2(IsMT,Depth,Self,Val,Type):- get_type1(IsMT,Depth,Self,Val,Type). + + +is_space_type(Space,is_asserted_space):- was_asserted_space(Space),!. +is_space_type(Space,Test):- no_repeats(Test,space_type_method(Test,_,_)),call(Test,Space),!. + +is_state_type(State,Test):- no_repeats(Test,state_type_method(Test,_,_)),call(Test,State),!. + +%is_dynaspace(Expr):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +is_dynaspace(S):- var(S),!,fail. +is_dynaspace(S):- was_asserted_space(S). +is_dynaspace(S):- py_named_space(S). +is_dynaspace(S):- typed_list(S,'hyperon::space::DynSpace',_). +% notrace( is_space_type(Expr,_)),!. + +get_type0(_,_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type0(IsMT,Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, + ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(IsMT,Depth2,Self,Val,Type))). +get_type0(IsMT,Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(IsMT,Depth,Self,Val,Type),!. +get_type0(IsMT,Depth,Self,Val,Type):- get_type03(IsMT,Depth,Self,Val,Type),!. + +get_type01(false,_Dpth,_Slf,Var,_):- var(Var),!. +get_type01(true,_Dpth,_Slf, [],'Expression'):- !. +get_type01(false,_Dpth,_Slf, [],'%Undefined%'):- !. + +get_type01(false,_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). + +get_type01(false,_Dpth,_Slf,Val,'Number'):- number(Val). +get_type01(false,_Dpth,_Slf,Val,'Integer'):- integer(Val). +get_type01(false,_Dpth,_Slf,Val,'Decimal'):- float(Val). +get_type01(false,_Dpth,_Slf,Val,'Rational'):- rational(Val). + +get_type01(_,_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type01(false,_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). +get_type01(false,_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. + +get_type01(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type01(false,_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). +get_type01(false,_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). +get_type01(IsMT,Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(IsMT,Depth2,Self,Val,Type). +%get_type01(false,_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +get_type01(true,_Dpth,_Slf,_Val,'String'). +get_type01(true,_Dpth,_Slf,_Val,'Symbol'). + + + +get_type02(false,_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. +get_type02(false,_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. +get_type02(IsMT,Depth,Self,[Op|Expr],Type):- maplist(get_type(IsMT,Depth,Self),Expr,Types), + metta_type(Self,[Op|Types],Type). + + +get_type03(IsMT,Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), + get_type03(IsMT,Depth,Self,[Op|Args],Type1), + get_type(IsMT,Depth,Self,Arg,ArgType), + ignore(sub_var(ArgType,Type1)->true;(sub_term(ST,Type1),var(ST),ST=ArgType)), + last(Type1,Type). + +get_type03(false,_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). +get_type03(false,Depth,Self,[Op|Args],Type):- symbol(Op), + get_operator_typedef(Self,Op,ParamTypes,RetType), + % Fills in type variables when possible + ignore(args_conform(Depth,Self,Args,ParamTypes)), + % unitests: arg violations should return () + (\+ args_violation(Depth,Self,Args,ParamTypes) -> Type=RetType ; (Type=[],!)). + + +get_type03(IsMT,Depth,Self,Expr,Type):- get_type02(IsMT,Depth,Self,Expr,Type). + +get_type03(IsMT,Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, + eval_args(Depth2,Self,EvalMe,Val), + \+ needs_eval(Val),!, + get_type(IsMT,Depth2,Self,Val,Type). + +get_type03(IsMT,Depth,Self,Expr,Type):- Depth2 is Depth-1, + eval_args(Depth2, Self,Expr,Val), Expr\=@=Val,!, + get_type(IsMT,Depth2,Self,Val,Type). + +get_type03(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). + +get_type03(false,_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. + +get_type03(IsMT,Depth,Self,List,Types):- List\==[], is_list(List), + Depth2 is Depth-1,maplist(get_type(IsMT,Depth2,Self),List,Types). + + +get_type03(false,_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. + +%get_type0(false,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +%get_type(false,Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(false,Depth2,Self,Type2,Type). +%get_type(false,Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). +%get_type(false,Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(false,Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(false,Depth2,Self,Ele,Type)),!. +%get_type(false,Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +%get_type0(false,_Dpth,_Slf,_,'%Undefined%'):- fail. + +state_decltype(Expr,Type):- functor(Expr,_,A),arg(A,Expr,Type),once(var(Type);is_decl_type(Type)). + + +get_type1(false,_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type1(false,_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type1(IsMT,Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type1(IsMT,Depth,Self,Val,Type). + + +get_type1(IsMT,Depth,Self,EvalMe,Type):- needs_eval(EvalMe), + eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, + get_type1(IsMT,Depth,Self,Val,Type). + +get_type1(false,_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type1(false,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type1(false,Depth,_Slf,Type,Type):- Depth<1,!. +get_type1(_True,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type1(IsMT,Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(IsMT,Depth2,Self),List,Types). +get_type1(false,_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type1(false,Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(false,Depth2,Self,Type2,Type). +%get_type1(false,Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type1(IsMT,Depth,Self,Expr,Type):-Depth2 is Depth-1, + eval_args(Depth2,Self,Expr,Val), + Expr\=@=Val,get_type1(IsMT,Depth2,Self,Val,Type). + + +get_type1(false,_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type1(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type1(false,_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +%get_type1(false,_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type1(false,Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(false,Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type1(false,Depth2,Self,Ele,Type)),!. +%get_type1(false,Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type1(false,_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type1(false,_Dpth,_Slf,_,'%Undefined%'). +%get_type1(false,Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(false,Depth2,Self,Val,Type). + + + +as_prolog(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). + + +as_prolog_e(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog_e(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog_e(Depth,Self,[H|T],[HH|TT]):- eval(Depth,Self,H,HH),as_prolog_e(Depth,Self,T,TT). + + + +try_adjust_arg_types(_Eq,_RetType,Depth,Self,ParamTypes,X,Y):- + args_conform(Depth,Self,X,ParamTypes),!, + %set_type(Depth,Self,Y,RetType), + into_typed_args(Depth,Self,ParamTypes,X,Y). +%adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(eval_args(Depth,Self),X,Y). +%adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(as_prolog(Depth,Self),X,Y),!. + +:- nodebug(casting). + +adjust_args(_Eq,_RetType,Res,Res,_Depth,_Self,_Op,X,Y):- X==[],!,Y=[]. +adjust_args(Eq,RetType,Res,NewRes,Depth,Self,Op,X,Y):- + get_operator_typedef(Self,Op,ParamTypes,RetType),!, + show_failure(casting,try_adjust_arg_types(Eq,RetType,Depth,Self,[RetType|ParamTypes],[Res|X],[NewRes|Y])). +adjust_args(_Eq,_RetType,Res,Res,_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. +adjust_args(Eq,_RetType,Res,NewRes,Depth,Self,_,X,Y):- maplist(eval_99(Eq,_,Depth,Self),[Res|X],[NewRes|Y]),!. + +into_typed_args(_Dpth,_Slf,Sought,Before,Y):- (\+ iz_conz(Sought); \+ iz_conz(Before)),!, Before=Y. +into_typed_args(Depth,Self,[Sought|SoughtSought],[Before|BeforeBefore],[Y|YY]):- + into_typed_arg(Depth,Self,Sought,Before,Y), + into_typed_args(Depth,Self,SoughtSought,BeforeBefore,YY). + +into_typed_arg(Depth,Self,Sought,Before,Y):- into_typed_arg0(Depth,Self,Sought,Before,Y)*->true;Before=Y. + +into_typed_arg0(Depth,Self,T,M,Y):- var(M),!,Y=M,put_attr(M,metta_vtype,typed_arg(Depth,Self,T)). +%into_typed_arg0(_Dpth,Self,Sought,Before,Y):- var(Before),!,put_attr(Before,metta_type,Self=Sought),put_attr(Y,metta_type,Self=Sought),Y=Before. +into_typed_arg0(Depth,Self,Sought,Before,Y):- var(Sought), !, get_type(false,Depth,Self,Before,Sought), + (wants_eval_kind(Sought)->eval_args(Depth,Self,Before,Y);Y=Before). + +into_typed_arg0(Depth,Self,Sought,Before,Y):- is_pro_eval_kind(Sought),!,eval_args(Depth,Self,Before,Y). +into_typed_arg0(Depth,Self,Sought,Before,Y):- ground(Before),!, \+ arg_violation(Depth,Self,Before,Sought),Y=Before. +into_typed_arg0(_Dpth,_Slf,Sought,Before,Y):- is_non_eval_kind(Sought),!,Before=Y. +into_typed_arg0(Depth,Self,_,Before,Y):- eval_args(Depth,Self,Before,Y). + +set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. +set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) + *->Was=Type + ; if_t(var(Var),put_attr(Var,metta_vtype,typed_arg(Depth,Self,Type))). + +metta_vtype:attr_unify_hook(typed_arg(Depth,Self,Type),NewValue):- + get_type(Depth,Self,NewValue,Was), + can_assign(Was,Type). + +can_assign(Was,Type):- Was=Type,!. +can_assign(Was,Type):- (is_nonspecific_type(Was);is_nonspecific_type(Type)),!. +can_assign(_Ws,_Typ):- fail. + +is_non_eval_kind(Type):- is_nonspecific_type(Type),!. +is_non_eval_kind('Type'). +is_non_eval_kind('Expression'). +is_non_eval_kind('Atom'). + +is_pro_eval_kind('Number'). +%is_pro_eval_kind('Nat'). +is_pro_eval_kind('Symbol'). +is_pro_eval_kind('Bool'). +is_pro_eval_kind(Type):- \+ is_non_eval_kind(Type). + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +%is_user_defined_goal(Self,[H|_]):- is_user_defined_head(Eq,Self,H). + +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f(=,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +%s_user_defined_head_f1(Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Other,H):- is_user_defined_head_f1(=,Other,H). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + +is_user_defined_head(Other,H):- mnotrace(is_user_defined_head0(Other,H)). +is_user_defined_head0(Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Other,H). +is_user_defined_head0(Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Other,F). +is_user_defined_head0(Other,H):- is_user_defined_head_f(Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,H). +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,[H|_]). + +%is_user_defined_head_f1(Other,H):- metta_type(Other,H,_). +%s_user_defined_head_f1(Other,H):- metta_atom(Other,[H|_]). +is_user_defined_head_f1(Other,H):- metta_defn(Other,[H|_],_). +%is_user_defined_head_f(_,H):- is_metta_builtin(H). + + + +is_special_op(Op):- current_self(Self),is_special_op(Self,Op). + +is_special_op(_Slf,F):- \+ atom(F), \+ var(F), !, fail. +is_special_op(Self,Op):- get_operator_typedef(Self,Op,ParamTypes,_RetType), + maplist(is_non_eval_kind,ParamTypes). +is_special_op(_Slf,Op):- is_special_builtin(Op). + + + +get_operator_typedef(Self,Op,ParamTypes,RetType):- + get_operator_typedef1(Self,Op,ParamTypes,RetType)*->true; + get_operator_typedef2(Self,Op,ParamTypes,RetType). +get_operator_typedef1(Self,Op,ParamTypes,RetType):- + metta_type(Self,Op,['->'|List]), + append(ParamTypes,[RetType],List). +get_operator_typedef2(Self,Op,ParamTypes,RetType):- + nop(fbug(missing(get_operator_typedef2(Self,Op,ParamTypes,RetType)))),!,fail. + + +is_special_builtin('case'). +is_special_builtin(':'). + +%is_special_builtin('='). +is_special_builtin('->'). +is_special_builtin('bind!'). +%is_special_builtin('new-space'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('if'). +is_special_builtin('rtrace'). +is_special_builtin('or'). +is_special_builtin('and'). +is_special_builtin('not'). +is_special_builtin('match'). +is_special_builtin('call'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('nop'). +is_special_builtin('assertEqual'). +is_special_builtin('assertEqualToResult'). +is_special_builtin('collapse'). +is_special_builtin('superpose'). +%is_special_builtin('=='). + +is_metta_builtin(Special):- is_special_builtin(Special). + +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('compile!'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + +% Comparison Operators in Prolog +% is_comp_op('=', 2). % Unification +is_comp_op('\\=', 2). % Not unifiable +is_comp_op('==', 2). % Strict equality +is_comp_op('\\==', 2). % Strict inequality +is_comp_op('@<', 2). % Term is before +is_comp_op('@=<', 2). % Term is before or equal +is_comp_op('@>', 2). % Term is after +is_comp_op('@>=', 2). % Term is after or equal +is_comp_op('=<', 2). % Less than or equal +is_comp_op('<', 2). % Less than +is_comp_op('>=', 2). % Greater than or equal +is_comp_op('>', 2). % Greater than +is_comp_op('is', 2). % Arithmetic equality +is_comp_op('=:=', 2). % Arithmetic exact equality +is_comp_op('=\\=', 2). % Arithmetic inequality + +% Arithmetic Operations +is_math_op('*', 2, exists). % Multiplication +is_math_op('**', 2, exists). % Exponentiation +is_math_op('+', 1, exists). % Unary Plus +is_math_op('+', 2, exists). % Addition +is_math_op('-', 1, exists). % Unary Minus +is_math_op('-', 2, exists). % Subtraction +is_math_op('.', 2, exists). % Array Indexing or Member Access (Depends on Context) +is_math_op('/', 2, exists). % Division +is_math_op('//', 2, exists). % Floor Division +is_math_op('///', 2, exists). % Alternative Division Operator (Language Specific) +is_math_op('/\\', 2, exists). % Bitwise AND +is_math_op('<<', 2, exists). % Bitwise Left Shift +is_math_op('>>', 2, exists). % Bitwise Right Shift +is_math_op('\\', 1, exists). % Bitwise NOT +is_math_op('\\/', 2, exists). % Bitwise OR +is_math_op('^', 2, exists). % Bitwise XOR +is_math_op('abs', 1, exists). % Absolute Value +is_math_op('acos', 1, exists). % Arc Cosine +is_math_op('acosh', 1, exists). % Hyperbolic Arc Cosine +is_math_op('asin', 1, exists). % Arc Sine +is_math_op('asinh', 1, exists). % Hyperbolic Arc Sine +is_math_op('atan', 1, exists). % Arc Tangent +is_math_op('atan2', 2, exists). % Two-Argument Arc Tangent +is_math_op('atanh', 1, exists). % Hyperbolic Arc Tangent +is_math_op('cbrt', 1, exists). % Cube Root +is_math_op('ceil', 1, exists). % Ceiling Function +is_math_op('ceiling', 1, exists). % Ceiling Value +is_math_op('cmpr', 2, exists). % Compare Two Values (Language Specific) +is_math_op('copysign', 2, exists). % Copy the Sign of a Number +is_math_op('cos', 1, exists). % Cosine Function +is_math_op('cosh', 1, exists). % Hyperbolic Cosine +is_math_op('cputime', 0, exists). % CPU Time +is_math_op('degrees', 1, exists). % Convert Radians to Degrees +is_math_op('denominator', 1, exists). % Get Denominator of Rational Number +is_math_op('div', 2, exists). % Integer Division +is_math_op('e', 0, exists). % Euler's Number +is_math_op('epsilon', 0, exists). % Machine Epsilon +is_math_op('erf', 1, exists). % Error Function +is_math_op('erfc', 1, exists). % Complementary Error Function +is_math_op('eval', 1, exists). % Evaluate Expression +is_math_op('exp', 1, exists). % Exponential Function +is_math_op('expm1', 1, exists). % exp(x) - 1 +is_math_op('fabs', 1, exists). % Absolute Value (Floating-Point) +is_math_op('float', 1, exists). % Convert Rational to Float +is_math_op('float_fractional_part', 1, exists). % Fractional Part of Float +is_math_op('float_integer_part', 1, exists). % Integer Part of Float +is_math_op('floor', 1, exists). % Floor Value +is_math_op('fmod', 2, exists). % Floating-Point Modulo Operation +is_math_op('frexp', 2, exists). % Get Mantissa and Exponent +is_math_op('fsum', 1, exists). % Accurate Floating Point Sum +is_math_op('gamma', 1, exists). % Gamma Function +is_math_op('gcd', 2, exists). % Greatest Common Divisor +is_math_op('getbit', 2, exists). % Get Bit at Position +is_math_op('hypot', 2, exists). % Euclidean Norm, Square Root of Sum of Squares +is_math_op('inf', 0, exists). % Positive Infinity +is_math_op('integer', 1, exists). % Convert Float to Integer +is_math_op('isinf', 1, exists). % Check for Infinity +is_math_op('isnan', 1, exists). % Check for Not a Number +is_math_op('lcm', 2, exists). % Least Common Multiple +is_math_op('ldexp', 2, exists). % Load Exponent of a Floating Point Number +is_math_op('lgamma', 1, exists). % Log Gamma +is_math_op('log', 1, exists). % Logarithm Base e +is_math_op('log10', 1, exists). % Base 10 Logarithm +is_math_op('log1p', 1, exists). % log(1 + x) +is_math_op('log2', 1, exists). % Base 2 Logarithm +is_math_op('lsb', 1, exists). % Least Significant Bit +is_math_op('max', 2, exists). % Maximum of Two Values +is_math_op('maxr', 2, exists). % Maximum Rational Number (Language Specific) +is_math_op('min', 2, exists). % Minimum of Two Values +is_math_op('minr', 2, exists). % Minimum Rational Number (Language Specific) +is_math_op('mod', 2, exists). % Modulo Operation +is_math_op('modf', 2, exists). % Return Fractional and Integer Parts +is_math_op('msb', 1, exists). % Most Significant Bit +is_math_op('nan', 0, exists). % Not a Number +is_math_op('nexttoward', 2, exists). % Next Representable Floating-Point Value +is_math_op('numerator', 1, exists). % Get Numerator of Rational Number +is_math_op('pi', 0, exists). % Pi +is_math_op('popcount', 1, exists). % Count of Set Bits +is_math_op('pow', 2, exists). % Exponentiation +is_math_op('powm', 3, exists). % Modulo Exponentiation +is_math_op('radians', 1, exists). % Convert Degrees to Radians +is_math_op('remainder', 2, exists). % Floating-Point Remainder +is_math_op('remquo', 3, exists). % Remainder and Part of Quotient +is_math_op('round', 1, exists). % Round to Nearest Integer +is_math_op('roundeven', 1, exists). % Round to Nearest Even Integer +is_math_op('setbit', 2, exists). % Set Bit at Position +is_math_op('signbit', 1, exists). % Sign Bit of Number +is_math_op('sin', 1, exists). % Sine Function +is_math_op('sinh', 1, exists). % Hyperbolic Sine +is_math_op('sqrt', 1, exists). % Square Root +is_math_op('tan', 1, exists). % Tangent Function +is_math_op('tanh', 1, exists). % Hyperbolic Tangent +is_math_op('testbit', 2, exists). % Test Bit at Position +is_math_op('trunc', 1, exists). % Truncate Decimal to Integer +is_math_op('ulogb', 1, exists). % Unbiased Exponent of a Floating-Point Value +is_math_op('xor', 2, exists). % Exclusive OR +is_math_op('zerop', 1, exists). % Test for Zero + + + +end_of_file. + + + +% # 1. Length of a List +% % Normal Recursive +% prolog +len([], 0). +len([_|T], N) :- + len(T, X), + N is X + 1. +% + +% % With Accumulator +% prolog +len_acc(L, N) :- + len_acc(L, 0, N). + +len_acc([], Acc, Acc). +len_acc([_|T], Acc, N) :- + NewAcc is Acc + 1, + len_acc(T, NewAcc, N). +% + +% # 2. Sum of a List +% % Normal Recursive +% prolog +sum([], 0). +sum([H|T], S) :- + sum(T, X), + S is X + H. +% + +% % With Accumulator +% prolog +sum_acc(L, S) :- + sum_acc(L, 0, S). + +sum_acc([], Acc, Acc). +sum_acc([H|T], Acc, S) :- + NewAcc is Acc + H, + sum_acc(T, NewAcc, S). +% + +% # 3. Factorial +% % Normal Recursive +% prolog +factorial(0, 1). +factorial(N, F) :- + N > 0, + X is N - 1, + factorial(X, Y), + F is N * Y. +% + +% % With Accumulator +% prolog +factorial_acc(N, F) :- + factorial_acc(N, 1, F). + +factorial_acc(0, Acc, Acc). +factorial_acc(N, Acc, F) :- + N > 0, + NewAcc is Acc * N, + NewN is N - 1, + factorial_acc(NewN, NewAcc, F). +% + +% # 4. Reverse List +% % Normal Recursive +% prolog +reverse_list([], []). +reverse_list([H|T], R) :- + reverse_list(T, RevT), + append(RevT, [H], R). +% + +% % With Accumulator +% prolog +reverse_list_acc(L, R) :- + reverse_list_acc(L, [], R). + +reverse_list_acc([], Acc, Acc). +reverse_list_acc([H|T], Acc, R) :- + reverse_list_acc(T, [H|Acc], R). +% + +% # 5. Fibonacci +% % Normal Recursive +% prolog +fibonacci(0, 0). +fibonacci(1, 1). +fibonacci(N, F) :- + N > 1, + N1 is N - 1, + N2 is N - 2, + fibonacci(N1, F1), + fibonacci(N2, F2), + F is F1 + F2. +% + +% % With Accumulator +% prolog +fibonacci_acc(N, F) :- + fibonacci_acc(N, 0, 1, F). + +fibonacci_acc(0, A, _, A). +fibonacci_acc(N, A, B, F) :- + N > 0, + NewN is N - 1, + NewB is A + B, + fibonacci_acc(NewN, B, NewB, F). +% + + + +% 6. Find an Element in a List +% # Normal Recursive +% prolog +element_in_list(X, [X|_]). +element_in_list(X, [_|T]) :- element_in_list(X, T). +% + +% # With Accumulator +% prolog +element_in_list_acc(X, L) :- element_in_list_acc(X, L, false). + +element_in_list_acc(X, [], Acc) :- Acc. +element_in_list_acc(X, [X|_], _) :- true. +element_in_list_acc(X, [_|T], Acc) :- element_in_list_acc(X, T, Acc). +% + +% 7. Check if a List is a Palindrome +% # Normal Recursive +% prolog +is_palindrome(L) :- reverse(L, L). +% + +% # With Accumulator +% prolog +is_palindrome_acc(L) :- reverse_acc(L, [], L). + +reverse_acc([], Acc, Acc). +reverse_acc([H|T], Acc, R) :- reverse_acc(T, [H|Acc], R). +% + +% 8. Calculate the Product of All Elements in a List +% # Normal Recursive +% prolog +product_list([], 1). +product_list([H|T], P) :- + product_list(T, Temp), + P is H * Temp. +% + +% # With Accumulator +% prolog +product_list_acc(L, P) :- product_list_acc(L, 1, P). + +product_list_acc([], Acc, Acc). +product_list_acc([H|T], Acc, P) :- + NewAcc is Acc * H, + product_list_acc(T, NewAcc, P). +% + +% 9. Find the Nth Element of a List +% # Normal Recursive +% prolog +nth_element(1, [H|_], H). +nth_element(N, [_|T], X) :- + N > 1, + M is N - 1, + nth_element(M, T, X). +% + +% # With Accumulator +% prolog +nth_element_acc(N, L, X) :- nth_element_acc(N, L, 1, X). + +nth_element_acc(N, [H|_], N, H). +nth_element_acc(N, [_|T], Acc, X) :- + NewAcc is Acc + 1, + nth_element_acc(N, T, NewAcc, X). +% + +% 10. Count the Occurrences of an Element in a List +% # Normal Recursive +% prolog +count_occurrences(_, [], 0). +count_occurrences(X, [X|T], N) :- + count_occurrences(X, T, M), + N is M + 1. +count_occurrences(X, [Y|T], N) :- + X \= Y, + count_occurrences(X, T, N). +% + +% # With Accumulator +% prolog +count_occurrences_acc(X, L, N) :- count_occurrences_acc(X, L, 0, N). + +count_occurrences_acc(_, [], Acc, Acc). +count_occurrences_acc(X, [X|T], Acc, N) :- + NewAcc is Acc + 1, + count_occurrences_acc(X, T, NewAcc, N). +count_occurrences_acc(X, [Y|T], Acc, N) :- + X \= Y, + count_occurrences_acc(X, T, Acc, N). +% + +% 11. Calculate the Greatest Common Divisor of Two Numbers +% # Normal Recursive +% prolog +gcd(A, 0, A) :- A > 0. +gcd(A, B, GCD) :- + B > 0, + R is A mod B, + gcd(B, R, GCD). +% + +% # With Accumulator +% prolog +gcd_acc(A, B, GCD) :- gcd_acc(A, B, 1, GCD). + +gcd_acc(A, 0, Acc, Acc) :- A > 0. +gcd_acc(A, B, Acc, GCD) :- + B > 0, + R is A mod B, + NewAcc is B * Acc, + gcd_acc(B, R, NewAcc, GCD). +% + +% 12. Check if a Number is Prime +% # Normal Recursive +% prolog +is_prime(2). +is_prime(N) :- + N > 2, + \+ (between(2, sqrt(N), X), N mod X =:= 0). +% + +% # With Accumulator +% prolog +is_prime_acc(N) :- is_prime_acc(N, 2). + +is_prime_acc(2, 2). +is_prime_acc(N, Acc) :- + N > 2, + ( + (Acc * Acc > N, !); + (N mod Acc =\= 0, NewAcc is Acc + 1, is_prime_acc(N, NewAcc)) + ). +% + +% 13. Merge Two Sorted Lists into a Sorted List +% # Normal Recursive +% prolog +merge_sorted([], L, L). +merge_sorted(L, [], L). +merge_sorted([H1|T1], [H2|T2], [H1|M]) :- + H1 =< H2, + merge_sorted(T1, [H2|T2], M). +merge_sorted([H1|T1], [H2|T2], [H2|M]) :- + H1 > H2, + merge_sorted([H1|T1], T2, M). +% + +% # With Accumulator +% prolog +merge_sorted_acc(L1, L2, L) :- merge_sorted_acc(L1, L2, [], L). + +merge_sorted_acc([], L, Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc(L, [], Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 =< H2, + merge_sorted_acc(T1, [H2|T2], [H1|Acc], M). +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 > H2, + merge_sorted_acc([H1|T1], T2, [H2|Acc], M). + +% + +% 14. Find the Last Element of a List +% # Normal Recursive +% prolog +last_element([H], H). +last_element([_|T], X) :- last_element(T, X). +% + +% # With Accumulator +% prolog +last_element_acc([H|T], X) :- last_element_acc(T, H, X). + +last_element_acc([], Acc, Acc). +last_element_acc([H|T], _, X) :- last_element_acc(T, H, X). +% + +% 15. Remove Duplicate Elements from a List +% # Normal Recursive +% prolog +remove_duplicates([], []). +remove_duplicates([H|T], [H|T1]) :- \+ member(H, T), remove_duplicates(T, T1). +remove_duplicates([_|T], T1) :- remove_duplicates(T, T1). +% + +% # With Accumulator +% prolog +remove_duplicates_acc(L, R) :- remove_duplicates_acc(L, [], R). + +remove_duplicates_acc([], Acc, Acc). +remove_duplicates_acc([H|T], Acc, R) :- + (member(H, Acc) -> remove_duplicates_acc(T, Acc, R); + remove_duplicates_acc(T, [H|Acc], R)). +% + +% 16. Check if a Binary Tree is Balanced +% # Normal Recursive +% prolog +is_balanced(null). +is_balanced(tree(L, _, R)) :- + height(L, Hl), + height(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + is_balanced(L), + is_balanced(R). +% + +% # With Accumulator +% prolog +is_balanced_acc(T) :- is_balanced_acc(T, 0). + +is_balanced_acc(null, 0). +is_balanced_acc(tree(L, _, R), H) :- + is_balanced_acc(L, Hl), + is_balanced_acc(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + H is max(Hl, Hr) + 1. +% + +% 17. Calculate the Height of a Binary Tree +% # Normal Recursive +% prolog +height(null, 0). +height(tree(L, _, R), H) :- + height(L, Hl), + height(R, Hr), + H is max(Hl, Hr) + 1. +% + +% # With Accumulator +% prolog +height_acc(T, H) :- height_acc(T, 0, H). + +height_acc(null, Acc, Acc). +height_acc(tree(L, _, R), Acc, H) :- + NewAcc is Acc + 1, + height_acc(L, NewAcc, Hl), + height_acc(R, NewAcc, Hr), + H is max(Hl, Hr). +% + +% 18. Search for an Element in a Binary Search Tree +% # Normal Recursive +% prolog +search_bst(tree(_, X, _), X). +search_bst(tree(L, Y, _), X) :- + X < Y, + search_bst(L, X). +search_bst(tree(_, Y, R), X) :- + X > Y, + search_bst(R, X). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +search_bst_acc(Tree, X) :- search_bst(Tree, X). +% + +% 19. Insert an Element into a Binary Search Tree +% # Normal Recursive +% prolog +insert_bst(null, X, tree(null, X, null)). +insert_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + insert_bst(L, X, L1). +insert_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + insert_bst(R, X, R1). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the insertion path is already determined by the BST property. +insert_bst_acc(Tree, X, NewTree) :- insert_bst(Tree, X, NewTree). +% + +% 20. Delete an Element from a Binary Search Tree +% # Normal Recursive +% prolog +delete_bst(Tree, X, NewTree) :- + remove_bst(Tree, X, NewTree). + +remove_bst(tree(L, X, R), X, Merged) :- merge_trees(L, R, Merged), !. +remove_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + remove_bst(L, X, L1). +remove_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + remove_bst(R, X, R1). + +merge_trees(null, Tree, Tree). +merge_trees(Tree, null, Tree). +merge_trees(tree(L1, X, R1), tree(L2, Y, R2), tree(Merged, Y, R2)) :- + merge_trees(tree(L1, X, R1), L2, Merged). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the deletion path is already determined by the BST property. +delete_bst_acc(Tree, X, NewTree) :- delete_bst(Tree, X, NewTree). +% + +% 21. Find the Lowest Common Ancestor in a Binary Search Tree +% # Normal Recursive +% prolog +lowest_common_ancestor(tree(_, Y, _), X, Z, Y) :- + X < Y, Z > Y; + X > Y, Z < Y. +lowest_common_ancestor(tree(L, Y, _), X, Z, LCA) :- + X < Y, Z < Y, + lowest_common_ancestor(L, X, Z, LCA). +lowest_common_ancestor(tree(_, Y, R), X, Z, LCA) :- + X > Y, Z > Y, + + + lowest_common_ancestor(R, X, Z, LCA). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +lowest_common_ancestor_acc(Tree, X, Z, LCA) :- lowest_common_ancestor(Tree, X, Z, LCA). +% + +% 22. Check if a Graph is Cyclic +% For graphs, it's better to represent them in a Prolog-friendly format, such as adjacency lists. I will use a representation where each node has a list of its neighbors. +% # Normal Recursive +% prolog +is_cyclic(Graph) :- + member(Vertex-_, Graph), + dfs(Vertex, Graph, [Vertex], _), !. + +dfs(Vertex, Graph, Visited, [Vertex|Visited]) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + member(Neighbor, Visited), !. +dfs(Vertex, Graph, Visited, FinalVisited) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + \+ member(Neighbor, Visited), + dfs(Neighbor, Graph, [Neighbor|Visited], FinalVisited). +% + +% # With Accumulator +% prolog +% Due to the way depth-first search works, a typical accumulator wouldn't be very effective. +% The visited list already acts like an accumulator. +is_cyclic_acc(Graph) :- is_cyclic(Graph). +% + +% 23. Perform a Depth-First Search on a Graph +% # Normal Recursive +% prolog +dfs_graph(Vertex, Graph) :- dfs_vertex(Vertex, Graph, []). + +dfs_vertex(Vertex, _, Visited) :- member(Vertex, Visited), !. +dfs_vertex(Vertex, Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + dfs_neighbors(Neighbors, Graph, [Vertex|Visited]). + +dfs_neighbors([], _, _). +dfs_neighbors([Neighbor|Neighbors], Graph, Visited) :- + dfs_vertex(Neighbor, Graph, Visited), + dfs_neighbors(Neighbors, Graph, Visited). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +dfs_graph_acc(Vertex, Graph) :- dfs_graph(Vertex, Graph). +% + +% 24. Perform a Breadth-First Search on a Graph +% # Normal Recursive +% prolog +bfs_graph(Vertex, Graph) :- + bfs([Vertex], Graph, [Vertex]). + +bfs([], _, _). +bfs([Vertex|Vertices], Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited), + append(Vertices, NewNeighbors, NewVertices), + bfs(NewVertices, Graph, NewVisited). + +filter_unvisited([], Visited, [], Visited). +filter_unvisited([Neighbor|Neighbors], Visited, NewNeighbors, NewVisited) :- + (member(Neighbor, Visited) -> + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited); + filter_unvisited(Neighbors, [Neighbor|Visited], NewNeighbors, [Neighbor|NewVisited]) + ). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +bfs_graph_acc(Vertex, Graph) :- bfs_graph(Vertex, Graph). +% + +% 25. Check if a Graph is Connected +% # Normal Recursive +% prolog +is_connected(Graph) :- + Graph = [Vertex-_|_], + dfs_graph(Vertex, Graph), + \+ (member(OtherVertex-_, Graph), \+ member(OtherVertex, Visited)), !. +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +is_connected_acc(Graph) :- is_connected(Graph). +% + +% 26. Find the Shortest Path between Two Nodes in a Graph +% # Normal Recursive +% prolog +shortest_path(Start, End, Graph, Path) :- + shortest_path([Start], End, Graph, [Start], Path). + +shortest_path(_, End, _, Visited, ReversePath) :- + reverse(ReversePath, [End|_]), !. +shortest_path(Vertices, End, Graph, Visited, Path) :- + adjacent_unvisited(Vertices, Graph, Visited, Adjacent), + append(Visited, Adjacent, NewVisited), + append(Vertices, Adjacent, NewVertices), + shortest_path(NewVertices, End, Graph, NewVisited, Path). +% + +% # With Accumulator +% prolog +% The visited list and the list of vertices to explore act as accumulators. +shortest_path_acc(Start, End, Graph, Path) :- shortest_path(Start, End, Graph, Path). +% + +% 27. Check if a String is a Palindrome +% # Normal Recursive +% prolog +is_string_palindrome(Str) :- string_chars(Str, Chars), is_palindrome(Chars). +% + +% # With Accumulator +% prolog +is_string_pal + +indrome_acc(Str) :- string_chars(Str, Chars), is_palindrome_acc(Chars, []). +% + +% 28. Compute the Edit Distance between Two Strings +% # Normal Recursive +% prolog +edit_distance([], [], 0). +edit_distance([_|T1], [], D) :- + edit_distance(T1, [], D1), + D is D1 + 1. +edit_distance([], [_|T2], D) :- + edit_distance([], T2, D1), + D is D1 + 1. +edit_distance([H1|T1], [H2|T2], D) :- + edit_distance(T1, T2, D1), + D is D1 + (H1 \= H2). +% + +% # With Accumulator +% prolog +edit_distance_acc(S1, S2, D) :- edit_distance_acc(S1, S2, 0, D). + +edit_distance_acc([], [], Acc, Acc). +edit_distance_acc([_|T1], [], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc(T1, [], NewAcc, D). +edit_distance_acc([], [_|T2], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc([], T2, NewAcc, D). +edit_distance_acc([H1|T1], [H2|T2], Acc, D) :- + NewAcc is Acc + (H1 \= H2), + edit_distance_acc(T1, T2, NewAcc, D). +% + +% 29. Find the Longest Common Subsequence of Two Strings +% # Normal Recursive +% prolog +lcs([], _, []). +lcs(_, [], []). +lcs([H|T1], [H|T2], [H|Lcs]) :- lcs(T1, T2, Lcs), !. +lcs(S1, [_|T2], Lcs) :- lcs(S1, T2, Lcs). +lcs([_|T1], S2, Lcs) :- lcs(T1, S2, Lcs). +% + +% # With Accumulator +% prolog +lcs_acc(S1, S2, Lcs) :- lcs_acc(S1, S2, [], Lcs). + +lcs_acc([], _, Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc(_, [], Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc([H|T1], [H|T2], Acc, Lcs) :- lcs_acc(T1, T2, [H|Acc], Lcs). +lcs_acc(S1, [_|T2], Acc, Lcs) :- lcs_acc(S1, T2, Acc, Lcs). +lcs_acc([_|T1], S2, Acc, Lcs) :- lcs_acc(T1, S2, Acc, Lcs). +% + +% 30. Find the Longest Common Substring of Two Strings +% # Normal Recursive +% prolog +longest_common_substring(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string(Subs, Lcs). + +substring(Str, Sub) :- + append(_, Rest, Str), + append(Sub, _, Rest). + +longest_string([H|T], Longest) :- + longest_string(T, H, Longest). + +longest_string([], Acc, Acc). +longest_string([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string(T, H, Longest); longest_string(T, Acc, Longest)). +% + +% # With Accumulator +% prolog +longest_common_substring_acc(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string_acc(Subs, [], Lcs). + +longest_string_acc([], Acc, Acc). +longest_string_acc([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string_acc(T, H, Longest); longest_string_acc(T, Acc, Longest)). +% + + diff --git a/metta_vspace/pyswip-want/metta_eval.new b/metta_vspace/pyswip-want/metta_eval.new new file mode 100755 index 00000000..0f26e199 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_eval.new @@ -0,0 +1,854 @@ + + + +%self_eval(X):- var(X),!. +%self_eval(X):- string(X),!. +%self_eval(X):- number(X),!. +%self_eval([]). +self_eval(X):- \+ callable(X),!. +self_eval(X):- is_valid_nb_state(X),!. +self_eval(X):- is_list(X),!,fail. +%self_eval(X):- compound(X),!. +%self_eval(X):- is_ref(X),!,fail. +self_eval(X):- atom(X),!, \+ nb_current(X,_),!. +self_eval('True'). self_eval('False'). self_eval('F'). + + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y==XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +current_self(Space):- nb_current(self_space,Space). +eval_args(A,AA):- + current_self(Space), + eval_args(11,Space,A,AA). + +%eval_args(Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval_args(X)),fail. + +eval_args(_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. +eval_args(Depth,Self,X,Y):- nonvar(Y),!,eval_args(Depth,Self,X,XX),evals_to(XX,Y). +eval_args(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_args(_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. +%eval_args(_Dpth,_Slf,[X|T],Y):- T==[], \+ atom(X), self_eval(X), !,Y=[X]. + +%eval_args(Depth,Self,X,Y):- !, eval_args00(Depth,Self,X,Y). +eval_args(Depth,Self,X,Y):- + call_nth(eval_args00(Depth,Self,X,Y),Nth), + % if `True` is not commented, we fail two tests in examples/compat/test_scripts/b4_nondeterm.metta + ((X=@=Y;/*Y=='True';*/Y=='False') -> (!, (Nth=1->true;fail) ) ; true). + + +eval_args00(Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + mnotrace((D1 is Depth-1)),!, + eval_args0(D1,Self,[F|X],Y). + +eval_args00(Depth,Self,X,Y):- + mnotrace((no_repeats_var(YY), + D1 is Depth-1)), + eval_args0(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY))). + + +%debugging_metta(G):-debugging(metta(eval))->ignore(G);true. + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace(Flag,Goal):- catch(ignore((is_debugging(Flag),Goal)),_,true). + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging(Flag):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,is_debugging(Var). +is_debugging(Flag):- debugging(Flag),!. +is_debugging(Flag):- debugging(metta(Flag)),!. +is_debugging(Flag):- flag_to_var(Flag,Var),!,option_value(Var,true). + + +eval_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ is_debugging(overflow)-> true; flag(eval_num,_,0),set_debug((eval),true)). +eval_args0(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_args0(Depth,Self,X,Y):- + Depth2 is Depth-1, + eval_args301(Depth,Self,X,M), + (M\=@=X ->eval_args0(Depth2,Self,M,Y);Y=X). + + + +eval_args301(Depth,Self,X,Y):- \+ debugging(metta(eval)),!, eval_args3011(Depth,Self,X,Y). +eval_args301(Depth,Self,X,Y):- flag(eval_num,EX,EX+1), + option_else(traclen,Max,100), + (EX>Max->(nodebug(metta(eval)),write('Switched off tracing. For a longer trace !(pragma! tracelen 101))'));true), + mnotrace((no_repeats_var(YY), D1 is Depth-1)), + DR is 99-D1, + if_trace((eval),indentq(Depth,'-->'(EX,Self,X,depth(DR)))), + Ret=retval(fail), + call_cleanup(( + eval_args3011(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + mnotrace(ignore(((if_trace((eval),indentq(Depth,'<--'(EX,Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(eval_args0(D1,Self,X,Y)),fail)). + +eval_args3011(Depth,Self,X,Y):- + call_nth(eval_args30(Depth,Self,X,Y),Nth), + % if `True` is not commented, we fail two tests in examples/compat/test_scripts/b4_nondeterm.metta + ((X=@=Y;/*Y=='True';*/Y=='False') -> (!, (Nth=1->true;fail) ) ; true). + +:- discontiguous eval_args30/4. +:- discontiguous eval_args2/4. + +eval_args30(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +eval_args30(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +eval_args30(Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval_args(Depth,Self,VI,VM), + ( VM\==VI -> eval_args(Depth,Self,[V|VM],VVO) ; + (eval_args(Depth,Self,V,VV), (V\==VV -> eval_args(Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_args30(_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. + +eval_args30(Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval_args(Depth,Self),VI,VO). + +eval_args30(_Dpth,_Slf,['repl!'],'True'):- !, repl. +eval_args30(Depth,Self,['!',Cond],Res):- !, call(eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['rtrace',Cond],Res):- !, rtrace(eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['time',Cond],Res):- !, time(eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['print',Cond],Res):- !, eval_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_args30(Depth,Self,['println!'|Cond],Res):- !, maplist(eval_args(Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_args30(Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval_args(Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_args30(Depth,Self,['trace!',A,B],C):- !,eval_args(Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_args30(_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). + +eval_args30(_Dpth,_Slf,List,Y):- is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H), !,Y=List. + +eval_args30(Depth,Self,['assertTrue', X],TF):- !, eval_args(Depth,Self,['assertEqual',X,'True'],TF). +eval_args30(Depth,Self,['assertFalse',X],TF):- !, eval_args(Depth,Self,['assertEqual',X,'False'],TF). + +eval_args30(Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_eval(Depth,Self,X,XX), bagof_eval(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_args30(Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (setof_eval(Depth,Self,X,XX), setof_eval(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_args30(Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_eval(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), + with_debug((eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L):-!. +unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- \+ compound(C),!,L=C. +unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). + +unify_lists(C,L):- \+ compound(C),!,L=C. +unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_answer(XX,YY):- equal_enough(XX,YY),!. +equal_enough_for_answer(XX,Y):- sub_sterm1(YY,Y), equal_enough(YY,XX),!. + +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_answer(XX,YY),!. + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + + +eval_args30(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter(Depth,Space,Goal). +eval_args30(Depth,Self,['match',Other,Goal,Template,Else],Template):- + (eval_args30(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). + +% Macro: case +eval_args30(Depth,Self,X,Res):- + X= [CaseSym,A,CL],CaseSym == 'case', !, + into_case_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case(Key,Case0,Value), + if_trace((case),(format('~N'), + writeqln(c(Nth,Key)=Value))))),KVs),!, + ((eval_args(Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), + (select_case(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval_args(Depth,Self,Value,Res). + + select_case(Depth,Self,AA,Cases,Value):- + (best_key(AA,Cases,Value) -> true ; + (maybe_special_keys(Depth,Self,Cases,CasES), + (best_key(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key(AA,Cases,Value):- + ((member(Match-Value,Cases),unify_enough(AA,Match))->true; + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match)))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(CASES,CASES):- is_list(CASES),!. + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval_args(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + +%[collapse,[1,2,3]] +eval_args30(Depth,Self,['collapse',List],Res):-!, bagof_eval(Depth,Self,List,Res). +%[superpose,[1,2,3]] +eval_args30(Depth,Self,['superpose',List],Res):- !, member(E,List),eval_args(Depth,Self,E,Res). + +get_set_sterm_p1(E,Cmpd,SA):- is_list(Cmpd), !, get_sa_p3(E,Cmpd,SA). +get_set_sterm_p1(E,Cmpd,SA):- compound(Cmpd), get_sa_p2(E,Cmpd,SA). + +get_sa_p2(E,Cmpd,setarg(N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(E,Cmpd,SA):- arg(_,Cmpd,Arg),get_set_sterm_p1(E,Arg,SA). + +get_sa_p3(E,Cmpd, b_set_nth1(N1,Cmpd)):- nth1(N1,Cmpd,E). +get_sa_p3(E,Cmpd,SA):- member(Arg,Cmpd),get_set_sterm_p1(E,Arg,SA). + + +nb_set_nth1(N, [_|List], Ele) :- N > 1, !, Nm1 is N - 1, nb_set_nth1(Nm1, List, Ele). +nb_set_nth1(N, List, Ele) :- nb_setarg(N, List, Ele). + +b_set_nth1(N, [_|List], Ele) :- N > 1, !, Nm1 is N - 1, b_set_nth1(Nm1, List, Ele). +b_set_nth1(N, List, Ele) :- setarg(N, List, Ele). + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). + + +eval_args30(_Dpth,_Slf, ['new-space'], Res):- !, 'new-space'(Res). + +eval_args30(Depth,Self, Term, Res):- fail, + mnotrace(( get_set_sterm_p1(ST,Term,P1), % ST\==Term, + is_list(ST), ST = [F|List], atom(F), + handle_inner(F),maplist(nonvar,List), %maplist(atomic,List), + call(P1,Var))), !, + eval_args(Depth,Self,ST,Var), eval_args(Depth,Self, Term, Res). +/* +eval_args30(Depth,Self, Term, Res):- + mnotrace(( get_set_sterm_p1(ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + bagof_eval(Depth,Self,List,Var), eval_args(Depth,Self, Term, Res). + +*/ +%handle_inner('superpose'). +%handle_inner('collapse'). +handle_inner('+'). + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + +eval_args30(Depth,Self,['if',Cond,Then],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res) ; (fail, Res = [])). + +eval_args30(Depth,Self,['If',Cond,Then],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res) ; (fail, Res = [])). + +eval_args30(Depth,Self,['if',Cond,Then,Else],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res);eval_args(Depth,Self,Else,Res)). + +eval_args30(Depth,Self,['If',Cond,Then,Else],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res);eval_args(Depth,Self,Else,Res)). + +eval_args30(_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + +eval_args30(Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval_args(Depth,Self,A5,AE), AE=A)), + eval_args(Depth,Self,AA,OO). +%eval_args30(Depth,Self,['let',A,A5,AA],AAO):- !,eval_args(Depth,Self,A5,A),eval_args(Depth,Self,AA,AAO). +eval_args30(Depth,Self,['let*',[],Body],RetVal):- !, eval_args(Depth,Self,Body,RetVal). +eval_args30(Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_args30(Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + +eval_args30(Depth,Self,['colapse'|List], Flat):- !, maplist(eval_args(Depth,Self),List,Res),flatten(Res,Flat). +eval_args30(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter(Depth,Space,PredDecl). +eval_args30(_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +eval_args30(_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +eval_args30(Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval_args(Depth,Self,A,AA), eval_args(Depth,Self,B,BB). + +eval_args30(Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval_args(Depth,Self,A,AA), eval_args(Depth,Self,B,BB). + + +eval_args30(Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval_args(Depth,Self,StateExpr,StateMonad), + eval_args(Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_args30(Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval_args(Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_args30(Depth,Self,['get-state',StateExpr],Value):- !, + eval_args(Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_args30(Depth,Self,['get-state',Expr],Value):- !, eval_args(Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +space_type_method(is_nb_state,new_space,init_state). +space_type_method(is_nb_state,clear_space,clear_nb_values). +space_type_method(is_nb_state,add_atom,add_nb_value). +space_type_method(is_nb_state,remove_atom,'change-state!'). +space_type_method(is_nb_state,replace_atom,replace_nb_value). +space_type_method(is_nb_state,atom_count,value_nb_count). +space_type_method(is_nb_state,get_atoms,'get-state'). +space_type_method(is_nb_state,atom_iter,value_nb_iter). + +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + + +eval_args30(Depth,Self,['get-type',Val],Type):- %if_repl(trace), + !, get_type(Depth,Self,Val,Type),Type\==[],!. %, ground(Type), Type\==Val,!. + + +mnotrace(G):- once(G). + + + +is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval(EvalMe):- is_list(EvalMe),!. + +get_type(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type(Depth,Self,Val,Type). + + +get_type(Depth,_Slf,Type,Type):- Depth<1,!. +get_type(Depth,Self,EvalMe,Type):- needs_eval(EvalMe),eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, + get_type(Depth,Self,Val,Type). + +get_type(_Dpth,Self,Fn,Type):- metta_type(Self,FnM,Type),FnM=@=Fn, nonvar(Type). +%get_type(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%reverse +%get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). +%get_type(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type(Depth,Self,Expr,Type):-Depth2 is Depth-1, eval_args30(Depth2,Self,Expr,Val),Expr\=@=Val,get_type(Depth2,Self,Val,Type). + +get_type(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type(_Dpth,_Slf,_,'%Undefined%'):- fail. +eval_args30(Depth,Self,['length',L],Res):- !, eval_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_args30(Depth,Self,['CountElement',L],Res):- !, eval_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + + +is_feo_f('Cons'). + +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f(N):- number(N),!. + + + +/* +eval_args30(Depth,Self,[F,A|Args],Res):- + \+ self_eval(A), + eval_args(Depth,Self,A,AA),AA\==A, + eval_args(Depth,Self,[F,AA|Args],Res). + + +eval_args30(Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_eval(A), + eval_args(Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), eval_args(Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +eval_args30(Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter(Depth,Self,['=',F,R]), eval_args(Depth,Self,[R|Args],Res). + +eval_args30(Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,eval_args(Depth,Self,FArgs,Res). +*/ +eval_args30(_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. +eval_args30(Depth,Self,['bind!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,eval_args(Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). +eval_args30(Depth,Self,['pragma!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,nd_ignore((eval_args(Depth,Self,Expr,Value),set_option_value(Name,Value))), return_empty(Value,RetVal). +eval_args30(_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). + +nd_ignore(Goal):- call(Goal)*->true;true. + +eval_args30(Depth,Self,['nop',Expr],Empty):- !, eval_args(Depth,Self,Expr,_), return_empty([],Empty). +eval_args30(Depth,Self,['do',Expr],Empty):- !, eval_args(Depth,Self,Expr,_), return_empty([],Empty). + +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). + +eval_args30(_Dpth,_Slf,[And],'True'):- is_and(And),!. +eval_args30(Depth,Self,['and',X,Y],TF):- !, as_tf((eval_args(Depth,Self,X,'True'),eval_args(Depth,Self,Y,'True')),TF). +eval_args30(Depth,Self,[And,X|Y],TF):- is_and(And),!,eval_args(Depth,Self,X,TF1), + is_True(TF1),eval_args30(Depth,Self,[And|Y],TF). +%eval_args2(Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +eval_args30(Depth,Self,['or',X,Y],TF):- !, as_tf((eval_args(Depth,Self,X,'True');eval_args(Depth,Self,Y,'True')),TF). + + + +eval_args30(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf('add-atom'(Space,PredDecl),TF). +eval_args30(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_args30(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Other,_,_),L1),length(L1,C1),findall(_,metta_atom(Space,_),L2),length(L2,C2),Count is C1+C2. +eval_args30(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). + + +eval_args30(Depth,Self,['+',N1,N2],N):- number(N1),!, + eval_args(Depth,Self,N2,N2Res), catch(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +eval_args30(Depth,Self,['-',N1,N2],N):- number(N1),!, + eval_args(Depth,Self,N2,N2Res), catch(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +eval_args30(Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(V),is_list(VI),!,maplist(eval_args(Depth,Self),VI,VO). + +eval_args30(Depth,Self,X,Y):- + (eval_args2(Depth,Self,X,Y)*->true; + (eval_args2_failed(Depth,Self,X,Y)*->true;X=Y)). + + +eval_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +eval_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +eval_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%eval_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval_args(Depth,Self,V,O)),V\=@=O,!. +eval_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, + eval_args(Depth,Self,H,HH), + eval_args2_failed(Depth,Self,T,TT). + +eval_args2_failed(Depth,Self,T,TT):- eval_args(Depth,Self,T,TT). + + %eval_args(Depth,Self,X,Y):- eval_args30(Depth,Self,X,Y)*->true;Y=[]. + +%eval_args30(Depth,_,_,_):- Depth<1,!,fail. +%eval_args30(Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_args30(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +% Kills zero arity functions eval_args30(Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval_args(Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_args2(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_args30(Depth,_,_,_):- Depth<1,!,fail. +eval_args2(Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_args2(Depth,Self,[F|PredDecl],Res):- + Depth>6, fail, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval_args(Depth,Self,[F|Temp],Res). + + + +% user defined function +eval_args2(Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Self,H)),!, + eval_args60(Depth,Self,[H|PredDecl],Res). + +% function inherited by system +eval_args2(Depth,Self,PredDecl,Res):- eval_args80(Depth,Self,PredDecl,Res). + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- notrace(catch(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- notrace(catch(G,error(_,_),fail)). + +as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous eval_args6/4. +%eval_args2(Depth,Self,PredDecl,Res):- eval_args6(Depth,Self,PredDecl,Res). + +%eval_args2(_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_eval,L1),!,Res=L1. +%eval_args2(_Depth,_Self,X,X). + + +is_user_defined_head(Other,H):- mnotrace(is_user_defined_head0(Other,H)). +is_user_defined_head0(Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Other,H). +is_user_defined_head0(Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Other,F). +is_user_defined_head0(Other,H):- is_user_defined_head_f(Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,H). +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,[H|_]). + +%is_user_defined_head_f1(Other,H):- metta_type(Other,H,_). +is_user_defined_head_f1(Other,H):- metta_atom(Other,[H|_]). +is_user_defined_head_f1(Other,H):- metta_defn(Other,[H|_],_). +%is_user_defined_head_f(_,H):- is_metta_builtin(H). + + +is_special_op(F):- \+ atom(F), \+ var(F), !, fail. +is_special_op('case'). +is_special_op(':'). +is_special_op('='). +is_special_op('->'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + + + +eval_args60(Depth,Self,H,B):- (eval_args64(Depth,Self,H,B)*->true;eval_args67(Depth,Self,H,B)). + +eval_args64(_Dpth,Self,H,B):- (metta_defn(Self,H,B);(metta_atom(Self,H),B='True')). + +% Has argument that is headed by the same function +eval_args67(Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval_args(Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_args60(Depth,Self,[H1|NewArgs],Res). + +eval_args67(Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Self,[H|Start],Left), + eval_args(Depth,Self,[Left|T1],Y). + +% Has subterm to eval +eval_args67(Depth,Self,[F|PredDecl],Res):- + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_args60(Depth,Self,[F|Temp],Res). + +%eval_args67(Depth,Self,X,Y):- (eval_args68(Depth,Self,X,Y)*->true;metta_atom_iter(Depth,Self,[=,X,Y])). + +eval_args67(Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval_args(Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +eval_args68(_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +eval_args68(_Dpth,Self,[H|T1],Y):- metta_defn(Self,[H|T1],Y). +eval_args68(_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +eval_args68(_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Self,Left,Y). + + +%eval_args6(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Self,['ift',R,Then],Become),eval_args(Depth,Self,CR,R),eval_args(Depth,Self,Then,_True),eval_args(Depth,Self,Become,RO). + +%metta_atom_iter(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, +% (metta_defn(Other,H,B)*->true;(metta_atom(Other,H),B='True')). +metta_atom_iter(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Other,H,B);((B='True';B=H),metta_atom(Other,H))). + +metta_atom_iter(Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(_Dpth,_Slf,[]):-!. +metta_atom_iter(_Dpth,Other,H):- metta_atom(Other,H). +metta_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_defn(Other,H,B),metta_atom_iter(D2,Other,B). +metta_atom_iter(Depth,Other,H):- nonvar(H),D2 is Depth -1, eval_args(D2,Other,H,B),B\==[],!. +/* +metta_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_defn(Other,H,B),metta_atom_iter(D2,Other,B). +metta_atom_iter(_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, +metta_atom_iter(D2,Self,X),metta_atom_iter(D2,Self,[And|Y]).*/ +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- metta_atom(Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_ref(Other,['=',H,B],Ref):-clause(metta_defn(Other,H,B),true,Ref). +metta_atom_iter_ref(Other,H,Ref):-clause(metta_atom(Other,H),true,Ref). + +%not_compound(Term):- \+ is_list(Term),!. +%eval_args2(Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_args645(Depth,Self,Term,Res). + + +% function inherited by system +eval_args80(Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(eval_args(Depth,Self),X,Y),!,eval_args5(Depth,Self,[F|Y],FY). +eval_args80(Depth,Self,FX,FY):- eval_args5(Depth,Self,FX,FY). + +eval_args5(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. +eval_args5(Depth,Self,[AE|More],TF):- length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_args6(Depth,Self,[AE|More],TF). +eval_args6(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). + +%eval_args80(Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval_args(Depth,Self,[F2|X2],Y2),eval_args(Depth,Self,X1,Y1). + + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +bagof_eval(Depth,Self,X,L):- !,bagof_or_nil(E,eval_args(Depth,Self,X,E),L). +setof_eval(Depth,Self,X,S):- !,bagof_or_nil(E,eval_args(Depth,Self,X,E),L),sort(L,S). +%setof_eval(Depth,Self,X,S):- setof(E,eval_args(Depth,Self,X,E),S)*->true;S=[]. +bagof_or_nil(T,G,L):- bagof(T,G,L)*->true;L=[]. diff --git a/metta_vspace/pyswip-want/metta_eval.old b/metta_vspace/pyswip-want/metta_eval.old new file mode 100755 index 00000000..b11dabdb --- /dev/null +++ b/metta_vspace/pyswip-want/metta_eval.old @@ -0,0 +1,1075 @@ +%self_eval(X):- var(X),!. +%self_eval(X):- string(X),!. +%self_eval(X):- number(X),!. +%self_eval([]). +self_eval(X):- \+ callable(X),!. +self_eval(X):- is_metta_declaration(X),!. +self_eval(X):- is_valid_nb_state(X),!. +self_eval(X):- is_list(X),!,fail. +%self_eval(X):- compound(X),!. +%self_eval(X):- is_ref(X),!,fail. +self_eval(X):- atom(X),!, \+ nb_current(X,_),!. +self_eval('True'). self_eval('False'). % self_eval('F'). +self_eval('Empty'). + +is_metta_declaration([F,_,_|T]):- T ==[], (F==':'; (F=='=', \+ + \+ (current_self(Space), is_user_defined_head_f(Space,F)))). +% is_metta_declaration([F|T]):- is_list(T), is_user_defined_head([F]),!. + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y==XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +current_self(Space):- nb_current(self_space,Space). +eval_args(A,AA):- + current_self(Space), + eval_args(11,Space,A,AA). + +%eval_args(Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval_args(X)),fail. + +eval_args(_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. +eval_args(_Dpth,_Slf,X,Y):- var(X),!,X=Y. +eval_args(Depth,Self,X,Y):- nonvar(Y),!,eval_args(Depth,Self,X,XX),evals_to(XX,Y). +eval_args(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_args(_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. + +eval_args(Depth,Self,X,Y):- + allow_repeats_eval(X), + !, + eval_args000011(Depth,Self,X,Y). +eval_args(Depth,Self,X,Y):- + notrace((no_repeats_var(YY), + D1 is Depth-1)), + eval_args000011(D1,Self,X,Y), + notrace(( \+ (Y\=YY))). + +allow_repeats_eval(_):- !. +allow_repeats_eval(_):- option_value(no_repeats,false),!. +allow_repeats_eval(X):- \+ is_list(X),!,fail. +allow_repeats_eval([F|_]):- atom(F),allow_repeats_eval_f(F). +allow_repeats_eval_f('superpose'). +allow_repeats_eval_f('collapse'). + +eval_args000011(D1,Self,X,Y):- eval_args0000(D1,Self,X,Y). +/* +eval_args000011(D1,Self,X,Y):- + call_nth(eval_args0000(D1,Self,X,Y),Nth), + Nth=1 -> make_requirments_for_nth2(Y,Reqs), +*/ +debugging_metta(G):-is_debugging((eval))->ignore(G);true. + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, catch(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))). +if_trace(Flag,Goal):- catch(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + +eval_args_ne(Depth,Self,X,E):- eval_args(Depth,Self,X,E), \+ return_empty([],E). +eval_args90(Depth,Self,X,Y):- eval_args_ne(Depth,Self,X,Y). %*->true;eval_args_failed(Depth,Self,X,Y). +eval_args99(Depth,Self,X,Y):- eval_args(Depth,Self,X,Y)*->true;eval_args_failed(Depth,Self,X,Y). + +eval_args0000(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ is_debugging(overflow)-> true; flag(eval_num,_,0),set_debug((eval),true)). +%eval_args0000(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +eval_args0000(Depth,Self,X,Y):- + Answers=ans([]), + copy_term(X,XX), + Depth2 is Depth-1, + call_nth(eval_args111(Depth,Self,X,M),Nth), + (is_bool_or_same(XX,Answers,Nth,M) + -> (!, (Nth=1->Y=M;fail) ) + ; eval_args0000(Depth2,Self,M,Y)), + nop(nonvar(Y)). + + +eval_args111(Depth,Self,X,Y):- + copy_term(X,XX), + Depth2 is Depth-1, + eval_args11(Depth2,Self,X,M), + ((XX=@=M;X=@=M) -> Y =M ; eval_args111(Depth2,Self,M,Y)). + + +is_bool_or_same( X,_Ans,_Nth,M):- X=@=M,!. +%is_bool_or_same( _,_):- !, fail. +is_bool_or_same( X,_Ans,_Nth,_):- \+ ground(X),!,fail. +is_bool_or_same(_X,_Ans,_Nth,M):- \+ atomic(M),!,fail. +is_bool_or_same( X,_Ans,_Nth,'True'):- !, ground(X). +is_bool_or_same(_X,_Ans,_Nth,M):- is_bool_or(M). +% if `True` is not commented, we fail two tests in examples/compat/test_scripts/b4_nondeterm.metta +%is_bool_or('True'). +is_bool_or('False'). +is_bool_or([]). + +%if_trace(not('disable-exec-trace'), +if_may_trace(G):- once(G). + +%eval_args11(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +%eval_args11(Depth,Self,X,Y):- \+ debugging(metta(eval)),!, eval_args20(Depth,Self,X,Y). + +eval_args11(Depth,Self,X,Y):- flag(eval_num,EX,EX+1), + option_else(traclen,Max,100), + (EX>Max->(set_debug(eval,false),set_debug(exec,false),set_debug(overflow,false), + skip(write('Switched off tracing. For a longer trace !(pragma! tracelen 101))')));true), + notrace((D1 is Depth-1)), + DR is 99-D1, + if_may_trace(if_trace((eval),indentq(Depth,'-->'(EX,Self,X,depth(DR))))), + Ret=retval(fail), + call_cleanup( + (eval_args20(D1,Self,X,Y), + notrace(( nb_setarg(1,Ret,Y)))), + if_may_trace(notrace(ignore(((Y\=@=X,flag(eval_num,_,EX),if_trace((eval),indentq(Depth,'<--'(EX,Ret))))))))), + (Ret\=@=retval(fail)->true;(rtrace(eval_args20(D1,Self,X,Y)),fail)). + + + +:- discontiguous eval_args20/4. +:- discontiguous eval_args30/4. +:- discontiguous eval_args30f/4. +:- discontiguous eval_args31/4. +:- discontiguous eval_args40/4. + + +/* +eval_args20(Depth,Self,[F,A|Args],Res):- + \+ self_eval(A), + eval_args(Depth,Self,A,AA),AA\==A, + eval_args(Depth,Self,[F,AA|Args],Res). + + +eval_args20(Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_eval(A), + eval_args(Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), eval_args(Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +eval_args20(Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter(Depth,Self,['=',F,R]), eval_args(Depth,Self,[R|Args],Res). + +eval_args20(Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,eval_args(Depth,Self,FArgs,Res). +*/ + + +as_prolog(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). + + +% eval_args20 is "1 step" +eval_args20(_Dpth,_Slf,Name,Value):- atom(Name), !, (nb_current(Name,Value) -> true ; Value=Name). +eval_args20(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_args20(Depth,_,_,_):- Depth<1,!,fail. +eval_args20(Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +eval_args20(Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval_args(Depth,Self,VI,VM), + ( VM\==VI -> eval_args(Depth,Self,[V|VM],VVO) ; + (eval_args(Depth,Self,V,VV), (V\==VV -> eval_args(Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_args20(_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. +eval_args20(_Dpth,_Slf,List,Y):- List=[H|_], \+ atom(H), maplist(self_eval,List), !,Y=List. +eval_args20(Depth,Self,[V|VI],[V|VO]):- var(V),!,maplist(eval_args(Depth,Self),VI,VO). +%eval_args20(_Dpth,_Slf,[V|VI],[V|VO]):- var(V),!,VI=VO. +%eval_args20(_Dpth,_Slf,['=',H,B],['=',H,B]):- trace,throw(should_been_caught_by_is_metta_decl/1). + + +% Macro: case +:- debug(metta(case)). +eval_args20(Depth,Self,['case',A,CL],Value):- !, + eval_args(Depth,Self,A,AA), + if_trace((case),(writeqln('switch'(A)=AA))), + must_det_ll(into_case_list(1,CL,KVs)), + select_switch(Depth,Self,AA,KVs,Match,Value), + if_trace((case),(writeqln('matched'=Match))), + if_trace((case),(writeqln('result'=Value))). + +select_switch(Depth,_Self,_A,_Cases,_Match,_Value):- Depth<1,!,fail. +select_switch(Depth,Self,A,Cases,Match,Value):- + Depth2 is Depth -1, + ((if_trace((case),(writeqln('select-1'=A))),select_case(Depth2,Self,A,Cases,Match,Value))*->true; + ((eval_args_complete_change(Depth2,Self,A,AA),if_trace((case),(writeqln('select-2'=AA))),select_switch(Depth2,Self, AA,Cases,Match,Value))*->true; + (best_key('%void%',Cases,Match,Value)))). +/* +!(assertEqualToResult + (case + (Link $X B) + ( ( (g $Y) + (Link $X $Y)))) ()) +*/ + select_case(Depth,Self,AA,Cases,Match,Value):- + ((best_key(AA,Cases,Match,Value) *-> true ; + ((maybe_special_keys(Depth,Self,Cases,CasES), best_key(AA,CasES,Match,Value)) *-> true; + (fail)))). + + best_key(AA,Cases,Match,Value):- + ((member(Match-Value,Cases),AA ==Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases),AA=@=Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases), AA=Match))->true; + ((member(Match-Value,Cases),unify_enough(AA,Match))->true))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(N,[SV|CL],[S-V|CASES]):- + must_det_ll(is_case(S,SV,V)), + if_trace((case),(format('~N'), writeqln('case'(N)=(S>V)))), + N2 is N+1, + into_case_list(N2,CL,CASES). + into_case_list(_,[],[]). + + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + fail,eval_args(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + fail, maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + + +%[superpose,[1,2,3]] +eval_args20(Depth,Self,['superpose',List],Res):- !, member(E,List), + ( eval_args(Depth,Self,E,Res) *-> ( \+ return_empty([],Res) ) ; eval_args_failed(Depth,Self,E,Res)). + +eval_args20(Depth,Self,[V|VI],Res):- eval_args30(Depth,Self,[V|VI],Res). + + + +must_eval(G):- call(G)*->true;throw(must_eval(G)). + +%eval_args30(Depth,Self,[V|VI],Res):- is_special_builtin(V),!, eval_args30(Depth,Self,[V|VI],Res). +%eval_args30(Depth,Self,[V|VI],Res):- is_metta_builtin(V),!, adjust_args(Depth,Self,V,VI,VO), eval_args30(Depth,Self,[V|VO],Res). + + + + + +eval_args30(_Dpth,_Slf,['repl!'],'True'):- !, repl. +eval_args30(Depth,Self,['!',Cond],Res):- !, call(eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['rtrace',Cond],Res):- !, rtrace(eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['trace',Cond],Res):- !, with_debug(eval,eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval_args(Depth,Self,Cond,Res)). +eval_args30(Depth,Self,['print',Cond],Res):- !, eval_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_args30(Depth,Self,['println!'|Cond],Res):- !, maplist(eval_args(Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_args30(Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval_args(Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_args30(Depth,Self,['trace!',A,B],C):- !,eval_args(Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_args30(_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). + + +eval_args30(Depth,Self,['assertTrue', X],TF):- !, eval_args(Depth,Self,['assertEqual',X,'True'],TF). +eval_args30(Depth,Self,['assertFalse',X],TF):- !, eval_args(Depth,Self,['assertEqual',X,'False'],TF). + +eval_args30(Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_eval(Depth,Self,X,XX), + bagof_eval(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_args30(Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (bagof_eval(Depth,Self,X,XX), bagof_eval(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). + +eval_args30(Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_eval(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + color_g_mesg('#114411',(writeq(Src))), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF=='True', is_debugging(pass));(TF=='False', is_debugging(fail))), + with_debug((eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L). +%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- \+ compound(C),!,L=C. +%unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). + +%unify_lists(C,L):- \+ compound(C),!,L=C. +%unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists(L,L):-!. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_test(X,Y):- X ==[], Y==[[]],!. +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_test2(XX,YY),!. +equal_enough_for_test2(X,Y):- equal_enough(X,Y). + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l([S1,V1|_],[S2,V2|_]):- S1 == 'State',S2 == 'State',!, equal_enouf(V1,V2). +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + + +eval_args30(Depth,Self,['ematch',Other,Goal,Template],Res):- !, + eval_args(Depth,Self,Other,Space), + metta_each_atom_iter(Depth,Space,Goal), + eval_args99(Depth,Self,Template,Res). + +metta_each_atom(Other,H):- =(H,Other). +metta_each_defn(Other,H,B):- =(H,Other),B=H. +metta_each_defn(Other,H,B):- =(H=B,Other). + +metta_each_atom_iter(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_each_defn(Other,H,B)*->true;(metta_each_atom(Other,H),B='True')). + +metta_each_atom_iter(Depth,_,_):- Depth<3,!,fail. +metta_each_atom_iter(_Dpth,_Slf,[]):-!. +metta_each_atom_iter(_Dpth,Other,H):- metta_each_atom(Other,H). +metta_each_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_each_defn(Other,H,B),metta_each_atom_iter(D2,Other,B). +metta_each_atom_iter(_Dpth,_Slf,[And]):- is_and(And),!. +metta_each_atom_iter(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_each_atom_iter(D2,Self,X),metta_each_atom_iter(D2,Self,[And|Y]). + +eval_args30(Depth,Self,['lmatch',Other,Goal,Template],Res):- !, + eval_args(Depth,Self,Other,Space), + metta_list_atom_iter(Depth,Space,Goal), + eval_args99(Depth,Self,Template,Res). + +metta_list_atom(Other,H):- member(H,Other). +metta_list_defn(Other,H,B):- member(H,Other),B=H. +metta_list_defn(Other,H,B):- member(H=B,Other). + +metta_list_atom_iter(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_list_defn(Other,H,B)*->true;(metta_list_atom(Other,H),B='True')). + +metta_list_atom_iter(Depth,_,_):- Depth<3,!,fail. +metta_list_atom_iter(_Dpth,_Slf,[]):-!. +metta_list_atom_iter(_Dpth,Other,H):- metta_list_atom(Other,H). +metta_list_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_list_defn(Other,H,B),metta_list_atom_iter(D2,Other,B). +metta_list_atom_iter(_Dpth,_Slf,[And]):- is_and(And),!. +metta_list_atom_iter(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_list_atom_iter(D2,Self,X),metta_list_atom_iter(D2,Self,[And|Y]). + + +eval_args30(Depth,Self,['match',Other,Goal,Template],Res):- !, + eval_args(Depth,Self,Other,Space), + metta_atom_iter(Depth,Space,Goal), + eval_args99(Depth,Self,Template,Res). + +metta_atom_iter(Depth,Other,[Equal,[F|H],B]):- '=' == Equal,!, % trace, + (metta_defn(Other,[F|HH],B)*-> true; (metta_atom(Other,[F|HH]),is_True(B))), + eval_until_unify(Depth,Other,H,HH). + + +metta_atom_iter(Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(_Dpth,_Slf,[]):-!. +metta_atom_iter(_Dpth,Other,H):- metta_atom(Other,H). +metta_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_defn(Other,H,B),metta_atom_iter(D2,Other,B). +metta_atom_iter(_Dpth,_Slf,[And|Y]):- is_and(And),Y==[]. +metta_atom_iter(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(D2,Self,X),metta_atom_iter(D2,Self,[And|Y]). + + +eval_until_unify(Depth,Self,X,Y):- eval_until_eq(Depth,Self,X,Y). + +eval_until_eq(_Dpth,_Slf,X,Y):- X=Y,!. +%eval_until_eq(Depth,Self,X,Y):- var(Y),!,eval_args_in_steps_or_same(Depth,Self,X,XX),Y=XX. +%eval_until_eq(Depth,Self,Y,X):- var(Y),!,eval_args_in_steps_or_same(Depth,Self,X,XX),Y=XX. +eval_until_eq(Depth,Self,X,Y):- \+is_list(Y),!,eval_args_in_steps_some_change(Depth,Self,X,XX),Y=XX. +eval_until_eq(Depth,Self,Y,X):- \+is_list(Y),!,eval_args_in_steps_some_change(Depth,Self,X,XX),Y=XX. +eval_until_eq(Depth,Self,X,Y):- eval_args_in_steps_some_change(Depth,Self,X,XX),eval_until_eq(Depth,Self,Y,XX). +eval_until_eq(_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + EX=EY,!, maplist(eval_until_eq(Depth,Self),RX,RY). +eval_until_eq(Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + ((var(EX);var(EY)),eval_until_eq(Depth,Self,EX,EY)), + maplist(eval_until_eq(Depth,Self),RX,RY). +eval_until_eq(Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + h((is_list(EX);is_list(EY)),eval_until_eq(Depth,Self,EX,EY)), + maplist(eval_until_eq(Depth,Self),RX,RY). + + eval_args_1change(Depth,Self,EX,EXX):- + eval_args20(Depth,Self,EX,EXX), EX \=@= EXX. + +eval_args_complete_change(Depth,Self,EX,EXX):- + eval_args(Depth,Self,EX,EXX), EX \=@= EXX. + +eval_args_in_steps_some_change(_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_args_in_steps_some_change(Depth,Self,EX,EXX):- eval_args_1change(Depth,Self,EX,EXX). +eval_args_in_steps_some_change(Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), + eval_args_in_steps_some_change(Depth,Self,EX,EXX), EX\=@=EXX, + append(L,[EXX|R],XX),eval_args_in_steps_or_same(Depth,Self,XX,Y). + +eval_args_in_steps_or_same(Depth,Self,X,Y):-eval_args_in_steps_some_change(Depth,Self,X,Y). +eval_args_in_steps_or_same(_Dpth,_Slf,X,Y):- X=Y. + + % (fail,return_empty([],Template))). + +eval_args30(Depth,Self,['match',Other,Goal,Template,Else],Template):- + ((eval_args30(Depth,Self,['match',Other,Goal,Template],Template), + \+ return_empty([],Template))*->true;Template=Else). + +into_pl_list(Var,Var):- var(Var),!. +into_pl_list(Nil,[]):- Nil == 'Nil',!. +into_pl_list([Cons,H,T],[HH|TT]):- Cons == 'Cons', !, into_pl_list(H,HH),into_pl_list(T,TT),!. +into_pl_list(X,X). + +into_metta_cons(Var,Var):- var(Var),!. +into_metta_cons([],'Nil'):-!. +into_metta_cons([Cons, A, B ],['Cons', AA, BB]):- 'Cons'==Cons, no_cons_reduce, !, + into_metta_cons(A,AA), into_metta_cons(B,BB). +into_metta_cons([H|T],['Cons',HH,TT]):- into_metta_cons(H,HH),into_metta_cons(T,TT),!. +into_metta_cons(X,X). + +eval_args30(_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +eval_args30(_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +eval_args30(Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- %no_cons_reduce, !, + eval_args99(Depth,Self,A,AA), eval_args99(Depth,Self,B,BB). +%eval_args30(Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, +% eval_args90(Depth,Self,A,AA), eval_args90(Depth,Self,B,BB). + +eval_args30(Depth,Self,['==',X,Y],TF):- !, as_tf((eval_until_eq(Depth,Self,X,Y)),TF),!. +% user defined function + +%[collapse,[1,2,3]] +eval_args30(Depth,Self,['collapse',List],Res):-!, bagof_eval(Depth,Self,List,Res). + +get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). +get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). + +eval_args30f(Depth,Self, Term, Res):- fail, + mnotrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,30), + member(Var,List), + eval_args(Depth,Self, Term, Res). + +eval_args30f(Depth,Self, Term, Res):- fail, + mnotrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, setof_eval(Depth,Self,List,Var), + eval_args(Depth,Self, Term, Res). + + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + + +eval_args30(Depth,Self,['if',Cond,Then,Else],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res);eval_args(Depth,Self,Else,Res)). + +eval_args30(Depth,Self,['if',Cond,Then],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res) ; Res = []). + + +%eval_args30(Depth,Self,['TupleConcat',A,A5],OO):- !, append + +eval_args30(Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval_args(Depth,Self,A5,AE), AE=A)), + eval_args(Depth,Self,AA,OO). +%eval_args30(Depth,Self,['let',A,A5,AA],AAO):- !,eval_args(Depth,Self,A5,A),eval_args(Depth,Self,AA,AAO). +eval_args30(_Dpth,_Slf,['let*',[]|T], RetVal):- T==[], !, return_empty([],RetVal). +eval_args30(Depth,Self,['let*',[],Body],RetVal):- !, eval_args(Depth,Self,Body,RetVal). + +% let* version 1 +eval_args30(Depth,Self,['let*',[[Var,Val]|LetRest]|Body],RetVal):- !, + eval_until_unify(Depth,Self,Var,Val), + %eval_args(Depth,Self,['==',Var,Val],_), + eval_args30(Depth,Self,['let*',LetRest|Body],RetVal). + +% let* version 2 +eval_args30(Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, eval_args30(Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + +%eval_args30(Depth,Self,['colapse'|List], Flat):- !, maplist(eval_args(Depth,Self),List,Res),flatten(Res,Flat). +eval_args30(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Depth,Self,Other,Space), metta_atom_iter(Depth,Space,PredDecl). + + +eval_args30(Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval_args(Depth,Self,StateExpr,StateMonad), + eval_args(Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_args30(Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval_args(Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_args30(Depth,Self,['get-state',StateExpr],Value):- !, + eval_args(Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_args30(Depth,Self,['get-state',Expr],Value):- !, eval_args(Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +eval_args30(Depth,Self,['get-type',Val],Type):- !, + get_type(Depth,Self,Val,Type). + + + +eval_args30(Depth,Self,['import!',Other,File],RetVal):- + (( into_space(Depth,Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal))). %RetVal=[]. +eval_args30(Depth,Self,['bind!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,eval_args(Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal))). +eval_args30(Depth,Self,['pragma!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,nd_ignore((eval_args(Depth,Self,Expr,Value),set_option_value(Name,Value))), return_empty(Value,RetVal))). +eval_args30(_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), return_empty(Self,RetVal))). + +nd_ignore(Goal):- call(Goal)*->true;true. + +eval_args30(_Dpth,_Slf,['::'|Expr],Expr):- !. +eval_args30(Depth,Self,['nop',Expr],Empty):- !, eval_args(Depth,Self,Expr,_), return_empty([],Empty). +eval_args30(_Dpth,_Slf,['nop'],Empty):- !, return_empty([],Empty). +eval_args30(_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space). + +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and(','). +is_and(S,_):- \+ atom(S),!,fail. +is_and('and','True'). +is_and('and2','True'). +is_and('#COMMA','True'). is_and(',','True'). % is_and('And'). + +eval_args30(_Dpth,_Slf,[And],True):- is_and(And,True),!. +eval_args30(Depth,Self,[And,X,Y],TF):- is_and(And,True),!, as_tf(( + eval_args(Depth,Self,X,True),eval_args(Depth,Self,Y,True)),TF). +eval_args30(Depth,Self,[And,X],True):- is_and(And,True),!, + eval_args(Depth,Self,X,True). +eval_args30(Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, + eval_args(Depth,Self,X,TF1), \+ \+ is_True(TF1), + eval_args(Depth,Self,[And|Y],TF). +%eval_args40(Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +eval_args30(Depth,Self,['or',X,Y],TF):- !, as_tf((eval_args(Depth,Self,X,'True');eval_args(Depth,Self,Y,'True')),TF). + + +eval_args30(Depth,Self,['add-atom',Other,PredDecl],TF):- !, (( into_space(Depth,Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF))). +eval_args30(Depth,Self,['remove-atom',Other,PredDecl],TF):- !, (( into_space(Depth,Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF))). +eval_args30(Depth,Self,['atom-count',Other],Count):- !, (( into_space(Depth,Self,Other,Space), findall(_,metta_defn(Other,_,_),L1),length(L1,C1),findall(_,metta_atom(Space,_),L2),length(L2,C2),Count is C1+C2)). +eval_args30(Depth,Self,['atom-replace',Other,Rem,Add],TF):- !, + ((into_space(Depth,Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF))). + + + + + + + +%eval_args30(_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + + +/* + + +%eval_args_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +%eval_args_failed(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%eval_args_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval_args(Depth,Self,V,O)),V\=@=O,!. + +eval_args_failed(Depth,Self,T,TT):- eval_args(Depth,Self,T,TT). + + %eval_args(Depth,Self,X,Y):- eval_args20(Depth,Self,X,Y)*->true;Y=[]. +*/ +%eval_args20(Depth,_,_,_):- Depth<1,!,fail. +%eval_args20(Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_args20(_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +% Kills zero arity functions +% eval_args20(Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval_args(Depth,Self,X,Y). + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- quietly(catch(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch(G,error(_,_),fail)). + + +as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +%eval_selfless(['=',X,Y],TF):-!,as_tf(X #= Y,TF). +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X=length(LL,Res);Res=1). +eval_args30(_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF). + +eval_args30(Depth,Self,['If',Cond,Then],Res):- !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res) ; (fail, Res = [])). + +eval_args30(Depth,Self,['do',Expr],Empty):- !, eval_args(Depth,Self,Expr,_), return_empty([],Empty). +eval_args30(Depth,Self,['CountElement',L],Res):- !, eval_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_args30(_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList). + +eval_args30(Depth,Self,['If',Cond,Then],Res):- is_user_defined_head_f(Self,'If'), !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res) ; Res = []). + +eval_args30(Depth,Self,['If',Cond,Then,Else],Res):-% is_user_defined_head_f(Self,'If'), !, + eval_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_args(Depth,Self,Then,Res);eval_args(Depth,Self,Else,Res)). + +% @TODO: This should not be here +eval_args30(_Dpth,_Slf,['ift',Cond,Then],Then):- Cond == 'True', !. + + +eval_args30(Depth,Self,[Op|Args],Res):- is_list(Args),!, + ((get_operator_typedef(Self,Op,Types,RetType), + set_type(Depth,Res,Self,RetType), + eval_args31(Depth,Self,Op,1,Args,Types,RetType,Res))) + *->true + ; eval_args32(Depth,Self,Op,1,Args,Res). +%eval_args30(Depth,Self,Cond,TF):- eval_args40(Depth,Self,Cond,TF). + + +eval_args31(Depth,Self,Op,N,Args,Types,RetType,Res):- + length(ArgsL,N), append(ArgsL,[ArgE|ArgsR],Args), + (((is_list(ArgE), + length(TypesL,N), append(TypesL,[TypeE|TypesR],Types), \+ is_non_eval_kind(TypeE), + maplist(not_arg_violation(Depth,Self),ArgsL,TypesL), + maplist(not_arg_violation(Depth,Self),ArgsR,TypesR), + eval_args11(Depth,Self,ArgE,ResE), ArgE\=@=ResE))-> true ; ResE=ArgE), + not_arg_violation(Depth,Self,ResE,TypeE), + append(ArgsL,[ResE|ArgsR],EArgs),!, + plus(1,N,NPlus1),eval_args31(Depth,Self,Op,NPlus1,EArgs,Types,RetType,Res). +eval_args31(Depth,Self,Op,_,Args,_Types,_RetType,Res):- eval_args33(Depth,Self,[Op|Args],Res). + + + + + +eval_args30(Depth,Self,[Op|Args],Res):- append(ArgsL,[ArgE|ArgsR],Args),is_list(ArgE),!, + ((get_operator_typedef(Self,Op,Types,RetType), + length(ArgsL,N), length(TypesL,N), + append(TypesL,[TypeE|TypesR],Types), + \+ is_non_eval_kind(TypeE), + maplist(not_arg_violation(Depth,Self),ArgsL,TypesL), + maplist(not_arg_violation(Depth,Self),ArgsR,TypesR), + eval_args11(Depth,Self,ArgE,ResE), ArgE\=@=ResE, + not_arg_violation(Depth,Self,ResE,TypeE), + set_type(Depth,Res,Self,RetType), + append(ArgsL,[ResE|ArgsR],EArgs)) + *-> eval_args(Depth,Self,[Op|EArgs],Res); + eval_args40(Depth,Self,[Op|Args],Res)). + + +% Macro Functions +eval_args30(Depth,Self,[F|PredDecl],Res):- + (Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))))*-> eval_args(Depth,Self,[F|Temp],Res); + eval_args40(Depth,Self,[F|PredDecl],Res). + +% Macro Functions +eval_args30fz(Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[Op|Sub], is_list(Sub), maplist(atomic,SSub))), + nop(is_user_defined_head_f(Self,Op)), eval_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval_args(Depth,Self,[F|Temp],Res). + + +eval_args30fz(Depth,Self,[Op,Arg1|VI],Res):- fail, is_list(Arg1),ground(Arg1), + get_operator_typedef(Self,Op,[Type1|_Rest],RetType), \+ is_non_eval_kind(Type1), + eval_args11(Depth,Self,Arg1,Res1), Arg1\=@=Res1, not_arg_violation(Depth,Self,Res1,Type1), + set_type(Depth,Res,Self,RetType),!, + eval_args30(Depth,Self,[Op,Res1|VI],Res). + + + + + +eval_args32(Depth,Self,Op,N,Args,Res):- + length(ArgsL,N), append(ArgsL,[ArgE|ArgsR],Args), + (((is_list(ArgE), eval_args11(Depth,Self,ArgE,ResE), ArgE\=@=ResE))-> true ; ResE=ArgE), + append(ArgsL,[ResE|ArgsR],EArgs),!, + plus(1,N,NPlus1),eval_args32(Depth,Self,Op,NPlus1,EArgs,Res). +eval_args32(Depth,Self,Op,_,Args,Res):- eval_args33(Depth,Self,[Op|Args],Res). + + +eval_args33(Depth,Self,Cond,TF):- eval_args40(Depth,Self,Cond,TF). + + +%eval_args20(Depth,Self,[V|VI],[V|VO]):- is_metta_data_functor(V), is_list(VI),!,maplist(eval_args(Depth,Self),VI,VO). +eval_args40(Depth,Self,[V|VI],[V|VO]):- is_metta_data_functor(V), !, must_eval(adjust_args(Depth,Self,V,VI,VO)). + +% less Macro-ey Functions +eval_args40(Depth,Self,['+',N1,N2],N):- number(N1),!, + eval_args(Depth,Self,N2,N2Res), catch(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +eval_args40(Depth,Self,['-',N1,N2],N):- number(N1),!, + eval_args(Depth,Self,N2,N2Res), catch(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +eval_args40(_Dpth,_Slf,[F|LESS],Res):- once(maybe_efbug(show_success,eval_selfless([F|LESS],Res))),mnotrace(([F|LESS]\==Res)),!. + +eval_args40(Depth,Self,X,Y):- + mnotrace(is_user_defined_goal(Self,X)),!, + (efbug(show_success,eval_args60(Depth,Self,X,Y))*->true ; + (efbug(show_failure,eval_args_failed(Depth,Self,X,Y)*->true;X=Y))). + + +% predicate inherited by system +eval_args40(Depth,Self,[AE|More],TF):- + length(More,Len), + is_syspred(AE,Len,Pred), + adjust_args(Depth,Self,AE,More,Adjusted),!, + catch_warn(efbug(show_call,as_tf(apply(Pred,Adjusted),TF))). + +eval_args40(Depth,Self,X,Y):- + (efbug(show_success,eval_args80(Depth,Self,X,Y))*->true ; + (efbug(show_failure,eval_args_failed(Depth,Self,X,Y)*->true;X=Y))). + + +% function inherited by system +eval_args80(Depth,Self,[AE|More],TF):- + length([AE|More],Len), + is_syspred(AE,Len,Pred), + adjust_args(Depth,Self,AE,More,Adjusted),!, + append(Adjusted,[TF],Args),!, + efbug(show_call,catch_warn(apply(Pred,Args))). + + +eval_args_failed(Depth,Self,[X|XX],[Y]):- XX == [],!,eval_args99(Depth,Self,X,Y). +eval_args_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +eval_args_failed(Depth,Self,[H|T],[HH|TT]):- !, + eval_args99(Depth,Self,H,HH), + eval_args_failed(Depth,Self,T,TT). +eval_args_failed(_Dpth,_Slf,T,TT):- ignore(T=TT). + + + +/* +; Bind &kb22 to a new empty Space +!(bind! &kb22 (new-space)) + +; Some knowledge +(= (frog $x) + (and (croaks $x) + (eat_flies $x))) +(= (croaks Fritz) True) +(= (eat_flies Fritz) True) +(= (croaks Sam) True) +(= (eat_flies Sam) True) +(= (green $x) + (frog $x)) + +; Define conditional +(: ift (-> Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous eval_args6/4. +%eval_args40(Depth,Self,PredDecl,Res):- eval_args6(Depth,Self,PredDecl,Res). + +%eval_args40(_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_eval,L1),!,Res=L1. +%eval_args40(_Depth,_Self,X,X). + + + +%eval_args30(Depth,Self,['eq',X,Y],Res):- !, as_tf(eval_until_eq(Depth,Self,X,Y),Res). +eval_args60(RetType,_Dpth,_Slf,['memb',E,List],Res):- !, into_pl_list(List,PLList),as_tf(member(E,PLList), Res),check_returnval(RetType,Res). + +eval_args60(RetType,Depth,Self,[Op,Arg1|VI],Res):- is_list(Arg1),!, + ((get_operator_typedef(Self,Op,[Type1|_Rest],RetType), + \+ is_non_eval_kind(Type1), + eval_args0000(RetType,Depth,Self,Arg1,Res1), Arg1\=@=Res1, \+ arg_violation(Depth,Self,Res1,Type1), set_type(Depth,Self,Res,RetType) ) + *-> eval_args60(RetType,Depth,Self,[Op,Res1|VI],Res); + eval_args63(RetType,Depth,Self,[Op,Arg1|VI],Res)). + +eval_args60(RetType,Depth,Self,[Op,Arg1|VI],Res):- fail, !, + ((is_list(Arg1),eval_args_in_steps_some_change(RetType,Depth,Self,Arg1,Res1)) + *-> eval_args63(RetType,Depth,Self,[Op,Res1|VI],Res) + ;eval_args63(RetType,Depth,Self,[Op,Arg1|VI],Res)). +eval_args60(RetType,Depth,Self,H,B):-eval_args63(RetType,Depth,Self,H,B). + +%eval_args60(RetType,Depth,Self,[Equals,X,Y],E):-Equals=='=',!, eval_args(RetType,Depth,Self,['==',Y,X],E). + +eval_args63(RetType,Depth,Self,H,B):- + ( no_repeats(H+B,eval_args64(RetType,Depth,Self,H,B))*->true;eval_args67(RetType,Depth,Self,H,B)). +%eval_args63(RetType,Depth,Self,H,B):- + % ( (eval_args64(RetType,Depth,Self,H,B))*->true;eval_args67(RetType,Depth,Self,H,B)). + +eval_args64(RetType,Depth,Self,H,B):- \+ iz_conz(H), !,eval_args66(RetType,Depth,Self,H,B). +eval_args64(RetType,Depth,Self,[H|Args],B):- % no weird template matchers + forall(eval_args65(RetType,Depth,Self,[H|Template],B),maplist(not_template_arg,Template)),!, + eval_args66(RetType,Depth,Self,[H|Args],B). +% Use the first template match +eval_args64(RetType,Depth,Self,[H|Args],B):- + eval_args65(RetType,Depth,Self,[H|Template],B), + Args=Template,!. + +not_template_arg(TArg):- var(TArg), !, \+ attvar(TArg). +not_template_arg(TArg):- atomic(TArg),!. +%not_template_arg(TArg):- is_list(TArg),!,fail. + + +eval_args65(RetType,Depth,Self,H,B):- + no_repeats(H+B,eval_args66(RetType,Depth,Self,H,B)). + +eval_args66(_RetType,_Dpth,Self,H,B):- metta_defn(Self,H,B)*-> true ; (metta_atom(Self,H),B=H). + +eval_args67(RetType,Depth,Self,[[H|Start]|T1],Y):- + mnotrace(( + nonvar(H), + % is_user_defined_head_f(Self,H), + is_list(Start))), + metta_defn(Self,[H|Start],Left), + eval_args(RetType,Depth,Self,[Left|T1],Y). + +% Has argument that is headed by the same function +eval_args67(RetType,Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval_args(RetType,Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_args60(RetType,Depth,Self,[H1|NewArgs],Res). + +% Has subterm to eval +eval_args67(RetType,Depth,Self,[F|PredDecl],Res):- !, fail, + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval_args(RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_args60(RetType,Depth,Self,[F|Temp],Res). + +%eval_args67(RetType,Depth,Self,X,Y):- (eval_args68(RetType,Depth,Self,X,Y)*->true;metta_atom_iter(Depth,Self,[=,X,Y])). + +eval_args67(RetType,Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval_args(RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +eval_args68(_RetType,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +eval_args68(RetType,_Dpth,Self,[H|T1],Y):- metta_defn(Self,[H|T1],Y). +eval_args68(RetType,_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +eval_args68(RetType,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Self,Left,Y). + + + + +%eval_args6(RetType,Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Self,['ift',R,Then],Become),eval_args(RetType,Depth,Self,CR,R),eval_args(RetType,Depth,Self,Then,_True),eval_args(RetType,Depth,Self,Become,RO). + +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- metta_atom(Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_ref(Other,['=',H,B],Ref):-clause(metta_defn(Other,H,B),true,Ref). +metta_atom_iter_ref(Other,H,Ref):-clause(metta_atom(Other,H),true,Ref). + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). + +%not_compound(Term):- \+ is_list(Term),!. +%eval_args40(RetType,Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_args645(RetType,Depth,Self,Term,Res). + +%eval_args40(RetType,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval_args(RetType,Depth,Self,[F2|X2],Y2),eval_args(RetType,Depth,Self,X1,Y1). + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +findall_eval(Depth,Self,X,L):- !, findall(E,eval_args_ne(_RetType,Depth,Self,X,E),L). +bagof_eval(Depth,Self,X,L):- !,bagof_or_nil(E,eval_args_ne(_RetType,Depth,Self,X,E),L). +setof_eval(Depth,Self,X,S):- !,bagof_or_nil(E,eval_args_ne(_RetType,Depth,Self,X,E),L),sort(L,S). +%setof_eval(Depth,Self,X,S):- setof(E,eval_args(RetType,Depth,Self,X,E),S)*->true;S=[]. +bagof_or_nil(T,G,L):- findall(T,G,L). +%bagof_or_nil(T,G,L):- bagof(T,G,L)*->true;L=[]. + + + + diff --git a/metta_vspace/pyswip/metta_eval.p b/metta_vspace/pyswip-want/metta_eval.p similarity index 100% rename from metta_vspace/pyswip/metta_eval.p rename to metta_vspace/pyswip-want/metta_eval.p diff --git a/metta_vspace/pyswip-want/metta_eval.pl b/metta_vspace/pyswip-want/metta_eval.pl new file mode 100755 index 00000000..00d980a7 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_eval.pl @@ -0,0 +1,1429 @@ +% +% post match modew +:- style_check(-singleton). + +self_eval0(X):- \+ callable(X),!. +self_eval0(X):- is_valid_nb_state(X),!. +%self_eval0(X):- string(X),!. +%self_eval0(X):- number(X),!. +%self_eval0([]). +self_eval0(X):- is_metta_declaration(X),!. +self_eval0([F|X]):- is_list(X),length(X,Len),!,nonvar(F), is_self_eval_l_fa(F,Len),!. +self_eval0(X):- typed_list(X,_,_),!. +%self_eval0(X):- compound(X),!. +%self_eval0(X):- is_ref(X),!,fail. +self_eval0('True'). self_eval0('False'). % self_eval0('F'). +self_eval0('Empty'). +self_eval0(X):- atom(X),!, \+ nb_current(X,_),!. + +is_self_eval_l_fa('S',1). + +self_eval(X):- notrace(self_eval0(X)). + +:- set_prolog_flag(access_level,system). +hyde(F/A):- functor(P,F,A), redefine_system_predicate(P),'$hide'(F/A), '$iso'(F/A). +:- 'hyde'(option_else/2). +:- 'hyde'(atom/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(notrace/1). +:- 'hyde'(var/1). +:- 'hyde'(is_list/1). +:- 'hyde'(copy_term/2). +:- 'hyde'(nonvar/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(option_value/2). + + +is_metta_declaration([F|_]):- F == '->',!. +is_metta_declaration([F,_,_|T]):- T ==[], is_metta_declaration_f(F). + +is_metta_declaration_f(F):- F == ':', !. +is_metta_declaration_f(F):- F == '=', !, + \+ (current_self(Space), is_user_defined_head_f(Space,F)). + +(F==':'; + (F=='=', \+ + \+ (current_self(Space), is_user_defined_head_f(Space,F)))). +% is_metta_declaration([F|T]):- is_list(T), is_user_defined_head([F]),!. + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y=@=XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +current_space(Space):- current_self(Space). + +do_expander('=',_,X,X):-!. +do_expander(':',_,X,Y):- !, get_type(X,Y)*->X=Y. + +'get_type'(Arg,Type):- 'get-type'(Arg,Type). + + + + +eval_args(X,Y):- current_self(Self), eval_args(100,Self,X,Y). +eval_args(Depth,Self,X,Y):- eval_args('=',_,Depth,Self,X,Y). +eval_args(Eq,RetType,Depth,Self,X,Y):- eval(Eq,RetType,Depth,Self,X,Y). +/* +eval_args(Eq,RetType,Depth,Self,X,Y):- + locally(set_prolog_flag(gc,true), + rtrace_on_existence_error( + eval(Eq,RetType,Depth,Self,X,Y))). +*/ + + +%eval(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval(Eq,RetType,X)),fail. +eval(Depth,Self,X,Y):- eval('=',_RetType,Depth,Self,X,Y). + +%eval(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval(_Eq,_RetType,_Dpth,_Slf,X,Y):- notrace(var(X)),!,Y=X. + +eval(Eq,RetType,Depth,Self,X,Y):- notrace(nonvar(Y)),!, + get_type(Depth,Self,Y,RetType), !, + eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). + + +eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- notrace((T==[], number(X))),!, do_expander(Eq,RetType,X,YY),Y=[YY]. + +/* +eval(Eq,RetType,Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + notrace((D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,[F|X],Y). +*/ + +eval(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + +eval(Eq,RetType,Depth,Self,X,Y):- + %notrace(allow_repeats_eval_(X)), + !, + eval_11(Eq,RetType,Depth,Self,X,Y). +/* +eval(Eq,RetType,Depth,Self,X,Y):- + nop(notrace((no_repeats_var(YY)), + D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,X,Y), + notrace(( \+ (Y\=YY))). + +allow_repeats_eval_(_):- !. +allow_repeats_eval_(_):- option_value(no_repeats,false),!. +allow_repeats_eval_(X):- \+ is_list(X),!,fail. +allow_repeats_eval_([F|_]):- atom(F),allow_repeats_eval_f(F). +allow_repeats_eval_f('superpose'). +allow_repeats_eval_f('collapse'). +*/ +debugging_metta(G):- notrace((is_debugging((eval))->ignore(G);true)). + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ notrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ notrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +indentq(DR,EX,AR,retval(Term)):-nonvar(Term),!,indentq(DR,EX,AR,Term). +indentq(DR,EX,AR,Term):- + \+ \+ + color_g_mesg('#2f2f2f', + notrace(ignore((( format('~N;'), + format('~` t~d~5|:', [EX]), + format('~` t~d~8|', [DR]), + forall(between(1,DR,_),write(' |')),write('-'),write(AR),with_indents(false,write_src(Term)), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,false)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,rtrace). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,fbug(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,fbug(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,fbug(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,rtrace)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + + +eval_99(Eq,RetType,Depth,Self,X,Y):- + eval(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Eq,RetVal,Depth,Self,X,Y). + + + +eval_00(_Eq,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0), + debug(metta(eval))). +eval_00(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(Eq,RetType,Depth,Self,X,YO):- + Depth2 is Depth-1, + Nth = nth(0), + copy_term(X, XX),!, + call_nth(eval_20(Eq,RetType,Depth2,Self,X,M),RNum), + (((RNum>1 , XX=@=M))-> (!,fail) ; true), + eval_01(Eq,RetType,Depth2,Self,XX,M,Y), + + notrace(eval_03(Eq,RetType,Depth2,Self,_XX,Y,YO)), + nop((arg(1,Nth,Was), Was1 is Was+1, nb_setarg(1,Nth,Was1))). + +eval_01(Eq,RetType,Depth,Self,XX,M,YO):- notrace(((M\=@=XX, \+ self_eval(M)))),!,eval_02(Eq,RetType,Depth,Self,XX,M,YO). +eval_01(_Eq,_RetType,_Depth,_Self,_,M,M). + + +eval_02(Eq,RetType,Depth,Self,_XX,M,YO):- eval_00(Eq,RetType,Depth,Self,M,Y)*-> Y=YO; YO=M. + + +eval_03(Eq,RetType,Depth2,Self,_XX,Y,YO):- + (if_or_else((fail,subst_args(Eq,RetType,Depth2,Self,Y,YO)), + if_or_else((fail,finish_eval(Eq,RetType,Depth2,Self,Y,YO)), + Y=YO))). + + + +eval_11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +%eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, D1 is Depth-1, eval_00(Eq,RetType,D1,Self,X,Y). +eval_11(Eq,RetType,Depth,Self,X,Y):- + (( + + notrace((flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _)), + option_else('trace-length',Max,100), + notrace((if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + nop(format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1])))))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<20,if_trace((eval),(PrintRet=1, indentq(DR,EX, '-->',eval(X))))), + Ret=retval(fail))), + + call_cleanup(( + (eval_00(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + + (PrintRet==1 -> indentq(DR,EX,'<--',Ret) ; + notrace(ignore(((Y\=@=X, + if_t(DR<20,if_trace((eval),indentq(DR,EX,'<--',Ret))))))))), + + (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). + + +:- discontiguous eval_20/6. +:- discontiguous eval_40/6. + +% ================================================================= +% ================================================================= +% ================================================================= +% VAR HEADS/ NON-LISTS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,X,Y):- maybe_redirect(Eq,RetType,Depth,Self,X,Y), + fail, + eval_50(Eq,RetType,Depth,Self,X,Y). + +maybe_redirect(_Eq,_RetType,_Dpth,_Slf,X,_Y):- \+ is_list(X). +maybe_redirect(_Eq,_RetType,_Dpth,_Slf,[X|_],_Y):- \+ atom(X). +maybe_redirect(_Eq,_RetType,_Dpth,_Slf,X,_Y):- self_eval(X). + +eval_20(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. +%eval_20(Eq,RetType,_Dpth,Self,[X|T],Y):- T==[], atom(X), +% \+ is_user_defined_head_f(Self,X), +% do_expander(Eq,RetType,X,YY),!,Y=[YY]. + +eval_20(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + +eval_20(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). + +eval_20(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). + +% eval_20(_Eq,_RetType,_Depth,_Self,[ConceptNode,X],X):-notrace(( atom(ConceptNode),atom_concat(_Concept,'Node',ConceptNode))),!. + + +% ================================================================= +% ================================================================= +% ================================================================= +% TRACE/PRINT +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,['repl!'],Y):- !, repl,check_returnval(Eq,RetType,Y). +eval_20(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['rtrace!',Cond],Res):- !, rtrace(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['trace',Cond],Res):- !, with_debug(eval,eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['print',Cond],Res):- !, eval(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, + maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). + + +eval_20(_Eq,_RetType,_Depth,_Self,['println'|Cond],'Empty'):- !, format('~N'),maplist(write_src_nl,Cond),format('~N'). + +eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),fbug(['trace!',A,B]=C),format('~N'). +%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),fbug(A),format('~N'). + +eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- notrace((is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H))), !,Y=List,do_expander(Eq,RetType,Y,YY). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% UNIT TESTING/assert +% ================================================================= +% ================================================================= +% ================================================================= + + +eval_20(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +eval_20(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +eval_20(Eq,RetType,Depth,Self,['assertEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_20(Eq,RetType,Depth,Self,['assertEqualToResult',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqualToResult',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), sort(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', trace_on_pass);(TF='False', trace_on_fail)), + with_debug(metta(eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L). +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). + +%unify_lists(C,L):- \+ compound(C),!,L=C. +%unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists(L,L):-!. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +%s_empty(X):- var(X),!. +s_empty(X):- var(X),!,fail. +is_empty('Empty'). +is_empty([]). +is_empty([X]):-!,is_empty(X). +has_let_star(Y):- sub_var('let*',Y). + +equal_enough_for_test(X,Y):- is_empty(X),!,is_empty(Y). +equal_enough_for_test(X,Y):- has_let_star(Y),!,\+ is_empty(X). +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_test2(XX,YY),!. +equal_enough_for_test2(X,Y):- equal_enough(X,Y). + +equal_enouf(R,V):- is_ftVar(R), is_ftVar(V), R=V,!. +equal_enouf(X,Y):- is_empty(X),!,is_empty(Y). +equal_enouf(R,V):- R=@=V, R=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l([S1,V1|_],[S2,V2|_]):- S1 == 'State',S2 == 'State',!, equal_enouf(V1,V2). +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. + +set_last_error(_). + +% ================================================================= +% ================================================================= +% ================================================================= +% SPACE EDITING +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). + +eval_20(Eq,RetType,Depth,Self,[Op,Space|Args],Res):- is_space_op(Op),!, + eval_space_start(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space_start(Eq,RetType,_Depth,_Self,[_Op,_Other,Atom],Res):- + (Atom == [] ; Atom =='Empty'; Atom =='Nil'),!,return_empty('False',Res),check_returnval(Eq,RetType,Res). + +eval_space_start(Eq,RetType,Depth,Self,[Op,Other|Args],Res):- + into_space(Depth,Self,Other,Space), + eval_space(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space(Eq,RetType,_Dpth,_Slf,['add-atom',Space,PredDecl],Res):- !, + do_metta(python,load,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['remove-atom',Space,PredDecl],Res):- !, + do_metta(python,unload,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-count',Space],Count):- !, + ignore(RetType='Number'),ignore(Eq='='), + findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + length(Atoms,Count). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-replace',Space,Rem,Add],TF):- !, + copy_term(Rem,RCopy), as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Space,load,Add)),TF), + check_returnval(Eq,RetType,TF). + +eval_space(Eq,RetType,_Dpth,_Slf,['get-atoms',Space],Atom):- !, + ignore(RetType='Atom'), get_metta_atom_from(Space, Atom), check_returnval(Eq,RetType,Atom). + +% Match-ELSE +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- !, + ((eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template), + \+ return_empty([],Template))*->true;Template=Else). +% Match-TEMPLATE +eval_space(Eq,_RetType,Depth,Self,['match',Other,Goal,Template],Res):- !, + metta_atom_iter(Eq,Depth,Self,Other,Goal), + Template=Res. + +metta_atom_iter(Eq,Depth,Self,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + metta_defn(Eq,Other,[F|H],B). + +/* +metta_atom_iter(Eq,Depth,Self,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + metta_defn(Eq,Other,[F|H],BB), + eval_sometimes(Eq,_RetType,Depth,Self,B,BB). +*/ + +metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, + (Y==[] -> true ; + ( D2 is Depth -1, Y = [H|T], + metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). + +%metta_atom_iter(Eq,Depth,_Slf,Other,X):- dcall0000000000(eval_args_true(Eq,_RetType,Depth,Other,X)). +metta_atom_iter(Eq,Depth,_Slf,Other,X):- + %copy_term(X,XX), + dcall0000000000(eval_args_true(Eq,_RetType,Depth,Other,XX)), X=XX. + + +eval_args_true_r(Eq,RetType,Depth,Self,X,TF1):- + ((eval_ne(Eq,RetType,Depth,Self,X,TF1), \+ is_False(TF1)); + ( \+ is_False(TF1),metta_atom_true(Eq,Depth,Self,Self,X))). + +eval_args_true(Eq,RetType,Depth,Self,X):- + metta_atom_true(Eq,Depth,Self,Self,X); (nonvar(X),eval_ne(Eq,RetType,Depth,Self,X,TF1), TF1\=@=X, \+ is_False(TF1)). + +% is this OK? +metta_atom_true(Eq,Depth,Self,Other,H):- nonvar(H), metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_true(Eq,D2,Self,Other,B). +metta_atom_true(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). + + + +metta_atom_iter_ref(Other,H,Ref):-clause(asserted_metta_atom(Other,H),true,Ref). + + +eval_sometimes(Eq,RetType,Depth,Self,B,BB):- eval_20(Eq,RetType,Depth,Self,B,BB)*->true;(trace,B=BB). +%eval_sometimes(_Eq,_RetType,_Depth,_Self,B,B) + +% ================================================================= +% ================================================================= +% ================================================================= +% CASE/SWITCH +% ================================================================= +% ================================================================= +% ================================================================= +% Macro: case +:- nodebug(metta(case)). + +% if there is only a void then always return nothing for each Case +eval_20(Eq,_RetType,Depth,Self,['case',A,[[Void,_]]],Res):- + '%void%' == Void, + eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. + +% if there is nothing for case just treat like a collapse +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- !, + %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + once(eval(Eq,_RetType2,Depth,Self,A,_)), + return_empty([],Empty). + +% Macro: case +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- !, + must_det_ll(T==[]), + into_case_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case(Key,Case0,Value), + if_trace(metta(case),(format('~N'),writeqln(c(Nth,Key)=Value))))),KVs),!, + eval_case(Eq,RetType,Depth,Self,A,KVs,Res). + +eval_case(Eq,CaseRetType,Depth,Self,A,KVs,Res):- + ((eval(Eq,_UnkRetType,Depth,Self,A,AA), + if_trace((case),(writeqln('case'=A))), + if_trace(metta(case),writeqln('switch'=AA)), + (select_case(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval(Eq,CaseRetType,Depth,Self,Value,Res). + + select_case(Depth,Self,AA,Cases,Value):- + (best_key(AA,Cases,Value) -> true ; + (maybe_special_keys(Depth,Self,Cases,CasES), + (best_key(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key(AA,Cases,Value):- + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match))). + + into_case_list(CASES,CASES):- is_list(CASES),!. + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + +% ================================================================= +% ================================================================= +% ================================================================= +% COLLAPSE/SUPERPOSE +% ================================================================= +% ================================================================= +% ================================================================= + + + +%[collapse,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['collapse',List],Res):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res). + + + + + +%[superpose,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['superpose',List],Res):- !, + (((is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['superpose',UList],Res) + ; ((member(E,List),eval(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))), + \+ Res = 'Empty'. + +%[sequential,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['sequential',List],Res):- !, + (((fail,is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['sequential',UList],Res) + ; ((member(E,List),eval_ne(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))). + + +get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). +get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). + + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). + + +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +eval_20(_Eq,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Eq,_RetType1,Depth,Self,['nop',Expr], Empty):- !, + ignore(eval('=',_RetType2,Depth,Self,Expr,_)), + return_empty([], Empty). + +eval_20(Eq,_RetType1,Depth,Self,['do',Expr], Empty):- !, + forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + return_empty([],Empty). + + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +eval_20(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + +% ================================================================= +% ================================================================= +% ================================================================= +% LET/LET* +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_until_unify(_Eq,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). + +eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). +%eval_until_eq(Eq,RetType,Depth,Self,X,Y):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +%eval_until_eq(Eq,RetType,Depth,Self,Y,X):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). +eval_until_eq(_Eq,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + ((var(EX);var(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + h((is_list(EX);is_list(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). + + eval_1change(Eq,RetType,Depth,Self,EX,EXX):- + eval_20(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- + eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_in_steps_some_change(_Eq,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). +eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), + eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, + append(L,[EXX|R],XX),eval_in_steps_or_same(Eq,RetType,Depth,Self,XX,Y). + +eval_in_steps_or_same(Eq,RetType,Depth,Self,X,Y):-eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y). +eval_in_steps_or_same(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). + + % (fail,return_empty([],Template))). + + +eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval(Eq,RetType,Depth,Self,A5,AE), AE=A)), + eval(Eq,RetType,Depth,Self,AA,OO). +%eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,eval(Eq,RetType,Depth,Self,A5,A),eval(Eq,RetType,Depth,Self,AA,AAO). +eval_20(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, eval(Eq,RetType,Depth,Self,Body,RetVal). +eval_20(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_20(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CONS/CAR/CDR +% ================================================================= +% ================================================================= +% ================================================================= + + + +into_pl_list(Var,Var):- var(Var),!. +into_pl_list(Nil,[]):- Nil == 'Nil',!. +into_pl_list([Cons,H,T],[HH|TT]):- Cons == 'Cons', !, into_pl_list(H,HH),into_pl_list(T,TT),!. +into_pl_list(X,X). + +into_metta_cons(Var,Var):- var(Var),!. +into_metta_cons([],'Nil'):-!. +into_metta_cons([Cons, A, B ],['Cons', AA, BB]):- 'Cons'==Cons, no_cons_reduce, !, + into_metta_cons(A,AA), into_metta_cons(B,BB). +into_metta_cons([H|T],['Cons',HH,TT]):- into_metta_cons(H,HH),into_metta_cons(T,TT),!. +into_metta_cons(X,X). + +into_listoid(AtomC,Atom):- AtomC = [Cons,H,T],Cons=='Cons',!, Atom=[H,[T]]. +into_listoid(AtomC,Atom):- is_list(AtomC),!,Atom=AtomC. +into_listoid(AtomC,Atom):- typed_list(AtomC,_,Atom),!. + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). +%eval_20(Eq,RetType,Depth,Self,['flatten'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + +eval_20(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR_Y):- !, Atom=[CAR|_],!,do_expander(Eq,RetType,CAR,CAR_Y). +eval_20(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR_Y):- !, Atom=[_|CDR],!,do_expander(Eq,RetType,CDR,CDR_Y). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% STATE EDITING +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, + call_in_shared_space(((eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret)))). +eval_20(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + call_in_shared_space(((eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad)))). +eval_20(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + call_in_shared_space((eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value))). + +call_in_shared_space(G):- call_in_thread(main,G). + +% eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + call_in_shared_space(nb_current(Name, State)). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + call_in_shared_space(nb_setval(Name, State)). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +% ================================================================= +% ================================================================= +% ================================================================= +% GET-TYPE +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['get-type',Val],TypeO):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, + do_expander(Eq,RetType,Type,TypeO). + +eval_20(Eq,RetType,Depth,Self,['get-metatype',Val],TypeO):- !, get_metatype(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, + do_expander(Eq,RetType,Type,TypeO). + + + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% IMPORT/BIND +% ================================================================= +% ================================================================= +% ================================================================= +nb_bind(Name,Value):- nb_current(Name,Was),same_term(Value,Was),!. +nb_bind(Name,Value):- call_in_shared_space(nb_setval(Name,Value)),!. +eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- !, + (( into_space(Depth,Self,Other,Space), include_metta(Space,File),!,return_empty(Space,RetVal))), + check_returnval(Eq,RetType,RetVal). %RetVal=[]. +eval_20(Eq,RetType,_Depth,_Slf,['bind!',Other,['new-space']],RetVal):- atom(Other),!,assert(was_asserted_space(Other)), + return_empty([],RetVal), check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- !, + must_det_ll((into_name(Self,Other,Name),!,eval(Eq,RetType,Depth,Self,Expr,Value), + nb_bind(Name,Value), return_empty(Value,RetVal))), + check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- !, + must_det_ll((into_name(Self,Other,Name),nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), + set_option_value(Name,Value))), return_empty(Value,RetVal), + check_returnval(Eq,RetType,RetVal))). +eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), + return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). + + +nd_ignore(Goal):- call(Goal)*->true;true. + + + + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AND/OR +% ================================================================= +% ================================================================= +% ================================================================= + +is_True(T):- T\=='False',T\==[]. +%is_False(T):- once(T=='False';T==[]). + +is_and(S):- \+ atom(S),!,fail. +is_and(','). +is_and(S):- is_and(S,_). + +is_and(S,_):- \+ atom(S),!,fail. +is_and('and','True'). +is_and('and2','True'). +is_and('#COMMA','True'). +is_and(',' , 'EmptyType'). % is_and('And'). + +%eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, + %as_tf((eval_args(Eq,RetType,Depth,Self,X,True), + % eval_args(Eq,RetType,Depth,Self,Y,True)),TF). + +%eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, eval_args(Eq,RetType,Depth,Self,X,True). + +eval_20(Eq,RetType,_Dpth,_Slf,[And],TF):- is_and(And,_), !, \+ is_False(TF), check_returnval(Eq,RetType,TF), ignore(TF='True'). +eval_20(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, + eval_args_true_r(Eq,RetType,Depth,Self,X,TF), + eval_args(Eq,RetType,Depth,Self,[And|Y],_TF). + +eval_20(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, + as_tf((eval_args_true(Eq,RetType,Depth,Self,X);eval_args_true(Eq,RetType,Depth,Self,Y)),TF). + +eval_20(Eq,RetType,Depth,Self,['not',X],TF):- !, + as_tf(( \+ eval_args_true(Eq,RetType,Depth,Self,X)), TF). + +eval_20(Eq,RetType,Depth,Self,['number-of',X],N):- !, + bagof_eval(Eq,RetType,Depth,Self,X,ResL), + length(ResL,N), ignore(RetType='Number'). + +eval_20(Eq,RetType,Depth,Self,['number-of',X,N],TF):- !, + bagof_eval(Eq,RetType,Depth,Self,X,ResL), + length(ResL,N), true_type(Eq,RetType,TF). + + +% ================================================================= +% ================================================================= +% ================================================================= +% DATA FUNCTOR +% ================================================================= +% ================================================================= +% ================================================================= +eval20_failked(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- + nonvar(V),is_metta_data_functor(V),is_list(VI),!, + maplist(eval(Eq,RetType,Depth,Self),VI,VO). +eval20_failed(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval(Eq,RetType,Depth,Self, Term, Res). +eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), + eval(Eq,RetType,Depth,Self, Term, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% MeTTaLog Extras +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(_Eq,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). +eval_20(Eq,RetType,Depth,Self,['eval',S], Res):- !, eval(Eq,RetType,Depth,Self,S, Res). +eval_20(Eq,RetType,Depth,Self,['limit!',NE,S], Res):- !, + eval_20(Eq,RetType,Depth,Self,NE, N),!, + limit(N,eval_ne(Eq,RetType,Depth,Self,S, Res)). + +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call_ndet(Body,DET), + nb_setarg(1,Do_more_defs,false), + (DET==true -> ! ; true). + + +eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +/* +eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. + + +eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +*/ + + +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + +eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, + eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB), + append(AA,BB,OO). +eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), + ((eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB))), + ((AA+BB)\=@=(A+B)), + eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + +% ================================================================= +% ================================================================= +% ================================================================= +% METTLOG PREDEFS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), + (is_list(LL)->length(LL,Res);Res=1), + check_returnval(Eq,RetType,Res). + +eval_20(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). +eval_20(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). + + + + +eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1],ResL):- !, + maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ResL). +eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1,ArgL2],ResL):- !, + maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ResL). +eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1,ArgL2,ArgL3],ResL):- !, + maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ArgL3,ResL). + + eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Res):- + eval(Eq,RetType,Depth,Self,[Pred,Arg1],Res). + eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Arg2,Res):- + eval(Eq,RetType,Depth,Self,[Pred,Arg1,Arg2],Res). + eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Arg2,Arg3,Res):- + eval(Eq,RetType,Depth,Self,[Pred,Arg1,Arg2,Arg3],Res). + +eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1],ResL):- !, + concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ResL). +eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1,ArgL2],ResL):- !, + concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ResL). +eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1,ArgL2,ArgL3],ResL):- !, + concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ArgL3,ResL). +eval_20(Eq,RetType,Depth,Self,['concurrent-forall!',Gen,Test|Options],Empty):- !, + maplist(s2p,Options,POptions), + call(thread:concurrent_forall( + user:eval_ne(Eq,RetType,Depth,Self,Gen,_), + user:forall(eval(Eq,RetType,Depth,Self,Test,_),true), + POptions)), + return_empty([],Empty). +eval_20(Eq,RetType,Depth,Self,['hyperpose',ArgL1],ResL):- !, concurrent_maplist(eval(Eq,RetType,Depth,Self),ArgL1,ResL). + + +eval_20(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, + suggest_type(RetType,'Bool'), + eq_unify(Eq,_SharedType, X, Y, Res). + +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). + + +suggest_type(_RetType,_Bool). + + +true_type(_,_,_). + +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + if_or_else(eval_30(Eq,RetType,Depth,Self,PredDecl,Res), + if_or_else(eval_40(Eq,RetType,Depth,Self,PredDecl,Res), + if_or_else(eval_60(Eq,RetType,Depth,Self,PredDecl,Res), + (Nth==nth(0),fail,eval_failed(Eq,RetType,Depth,Self,PredDecl,Res))))). + +eval_30(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), + (arg(1,Do_more_defs,true)-> true ; (!,fail)), + call_ndet(show_ndet(Body),DET), + (DET==true -> ! ; true), + nb_setarg(1,Do_more_defs,false). + + %trace, + +%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- fail. +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_math(Eq,RetType,Depth,Self,PredDecl,Res). +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_sys_predicate(Eq,RetType,Depth,Self,PredDecl,Res). +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_sys_function(Eq,RetType,Depth,Self,PredDecl,Res). +%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- fail. + +% ================================================================= +% ================================================================= +% ================================================================= +% EVAL FAILED +% ================================================================= +% ================================================================= +% ================================================================= + + +eval_failed(Eq,RetVal,Depth,Self,T,TT):- + finish_eval(Eq,RetVal,Depth,Self,T,TT),!. + +finish_eval(_Eq,_RetVal,_Dpth,_Slf,T,TT):- \+ compound(T),!,TT=T. +%finish_eval(Eq,RetVal,_Dpth,_Slf,[],[]):-!. +%finish_eval(Eq,RetVal,_Dpth,_Slf,[F|LESS],Res):- once(Eq,RetVal,eval_selfless(Eq,RetVal,[F|LESS],Res)),notrace(Eq,RetVal,[F|LESS]\==Res),!. +%finish_eval(Eq,RetVal,Depth,Self,[V|Nil],[O]):- Nil==[], once(Eq,RetVal,eval(Eq,RetVal,Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +finish_eval(Eq,RetVal,Depth,Self,[H|T],[HH|TT]):- !, + eval(Eq,RetVal,Depth,Self,H,HH), + finish_eval(Eq,RetVal,Depth,Self,T,TT). +finish_eval(Eq,RetVal,Depth,Self,T,TT):- eval(Eq,RetVal,Depth,Self,T,TT). + + + :- discontiguous eval_40/6. + +% Macro Functions +%eval_40(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +eval_40_fail(_Eq,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40_fail(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + notrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + notrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval(Eq,RetType,Depth,Self,[F|Temp],Res). +% ================================================================= +% ================================================================= +% ================================================================= +% PLUS/MINUS +% ================================================================= +% ================================================================= +% ================================================================= +eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). + +eval_40_fail_50(Eq,RetType,Depth,Self,X,Y):- + fail, + eval_50(Eq,RetType,Depth,Self,X,Y). + +must_eval_args(Eq,RetType,Depth,Self,More,Adjusted):- + (eval_args(Eq,RetType,Depth,Self,More,Adjusted)*->true; + (with_debug(eval,eval_args(Eq,RetType,Depth,Self,More,Adjusted))*-> true; + ( + nl,writeq(eval_args(Eq,RetType,Depth,Self,More,Adjusted)),writeln('.'), + (More=Adjusted -> true ; + (trace, throw(must_eval_args(Eq,RetType,Depth,Self,More,Adjusted))))))). + + +% user defined function +eval_40_fail_to_60(Eq,RetType,Depth,Self,[H|PredDecl],Res):- fail, + %notrace(is_user_defined_head(Self,H)),!, + eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). + + +eval_50(Eq,RetType,_Dpth,_Slf,Name,Y):- atom(Name), !, + (nb_current(Name,X)-> do_expander(Eq,RetType,X,Y); Y = Name). + +eval_50(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. + +eval_50(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( (Eq \== ('='), Eq \== ('match'))) ,!, + if_or_else(call(Eq,'=',RetType,Depth,Self,X,Y),eval_51(Eq,RetType,Depth,Self,X,Y)). + +eval_50(Eq,RetType,Depth,Self,X,Y):- eval_51(Eq,RetType,Depth,Self,X,Y). + +eval_51(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_51(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). + +eval_51(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). + +% ================================================================= +% ================================================================= +% ================================================================= +% inherited by system +% ================================================================= +% ================================================================= +% ================================================================= +is_system_pred(S):- atom(S),atom_concat(_,'!',S). + +eval_math(_Eq,_RetType,_Dpth,_Slf,LESS,Res):- + notrace((ground(LESS),once((eval_selfless(LESS,Res),notrace(LESS\==Res))))),!. + + +% predicate inherited by system +eval_sys_predicate(Eq,RetType,_Depth,Self,[AE|More],TF):- + once((is_system_pred(AE), + length(More,Len), + is_syspred(AE,Len,Pred))), + \+ (atom(AE), atom_concat(_,'-fn',AE)), + current_predicate(Pred/Len), + %trace, ls,length(More,Len), + notrace( \+ is_user_defined_goal(Self,[AE|More]) ),!, + %show_ndet(adjust_args_mp(Eq,RetType,Depth,Self,Pred,Len,AE,More,Adjusted)), + % + More = Adjusted, + show_ndet(efbug(show_call,eval_call(catch_warn(apply(Pred,Adjusted)),TF))), + show_ndet(check_returnval(Eq,RetType,TF)). + +show_ndet(G):- call(G). +%show_ndet(G):- call_ndet(G,DET),(DET==true -> ! ; dmsg(show_ndet(G))). + +:- if( \+ current_predicate( is_user_defined_goal / 2 )). + + :- discontiguous eval_80/6. + +is_user_defined_goal(Self,Head):- + is_user_defined_head(Self,Head). + +:- endif. + +adjust_args_mp(_Eq,_RetType,Res,Res,_Depth,_Self,_Pred,_Len,_AE,Args,Adjusted):- Args==[],!,Adjusted=Args. +adjust_args_mp(Eq,RetType,Res,NewRes,Depth,Self,Pred,Len,AE,Args,Adjusted):- + functor(P,Pred,Len), predicate_property(P,meta_predicate(Needs)), + account_needs(1,Needs,Args,More),!, + adjust_args(Eq,RetType,Res,NewRes,Depth,Self,AE,More,Adjusted). +adjust_args_mp(Eq,RetType,Res,NewRes,Depth,Self,_Pred,_Len,AE,Args,Adjusted):- + adjust_args(Eq,RetType,Res,NewRes,Depth,Self,AE,Args,Adjusted). + +acct(0,A,call(eval(A,_))). +acct(':',A,call(eval(A,_))). +acct(_,A,A). +account_needs(_,_,[],[]). +account_needs(N,Needs,[A|Args],[M|More]):- arg(N,Needs,What),!, + acct(What,A,M),plus(1,N,NP1), + account_needs(NP1,Needs,Args,More). + +:- nodebug(metta(call)). + +eval_call(S,TF):- + s2p(S,P), !, + %if_trace(call,dmsg(eval_call_S(S,'$VAR'('TF')))),!, + if_trace(call,dmsg(eval_call_P(P,'$VAR'('TF')))),!, + as_tf(P,TF). + +eval_sys_function(Eq,RetType,_Depth,Self,[AE|More],Res):- + is_system_pred(AE), + length([AE|More],Len), + is_syspred(AE,Len,Pred), + \+ (atom(AE), atom_concat(_,'-p',AE)), + notrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted),!, + %adjust_args_mp(Eq,RetType,Depth,Self,Pred,Len,AE,More,Adjusted), + More = Adjusted, + append(Adjusted,[Res],Args), + efbug(show_call,catch_warn(apply(Pred,Args))), + check_returnval(Eq,RetType,Res). + +:- if( \+ current_predicate( check_returnval / 3 )). +check_returnval(_,_RetType,_TF). +:- endif. + + +%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_67(Eq,RetType,Depth,Self,PredDecl,Res). + + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- quietly(catch(G,E,(fbug(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch(G,error(_,_),fail)). + + +as_tf(G,TF):- G\=[_|_], catch_nowarn((call(G)*->TF='True';TF='False')). +%eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +%eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X=!;true). + +/* +eval_60(Eq,_RetT,Depth,Self,[H|Args0],B):- + \+ get_operator_typedef1(Self,H,_ParamTypes,_RType),!, + maplist(eval_99(Eq,_,Depth,Self),Args0,Args), + eval_65(Eq,RetType,Depth,Self,[H|Args],B),!. +*/ +/* +eval_60(Eq,_RetT,Depth,Self,[H|Args0],B):- symbol(H), + \+ notrace((is_user_defined_head_f(Self,H))), + \+ get_operator_typedef1(Self,H,_ParamTypes,_RType),!, + maplist(eval_99(Eq,_,Depth,Self),Args0,Args), + eval_65(Eq,RetType,Depth,Self,[H|Args],B),!. +*/ +eval_60(Eq,RetType,Depth,Self,H,B):- + (eval_64(Eq,RetType,Depth,Self,H,B)*->true; + (fail,eval_67(Eq,RetType,Depth,Self,H,B))). + + +%eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Eq,Self,H,B). +eval_64(Eq,_RetType,_Dpth,Self,H,B):- + Eq=='match',!,call(metta_atom(Self,H)),B=H. + + +eval_64(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + notrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + [Left|T1] \=@= [[H|Start]|T1], + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +eval_64(Eq,RetType,Depth,Self,[H|Args0],B):- % no weird template matchers + % forall(metta_defn(Eq,Self,[H|Template],_), + % maplist(not_template_arg,Template)), + Eq==('='), + adjust_args(Eq,RetType,_,_,Depth,Self,H,Args0,Args), + (metta_defn(Eq,Self,[H|Args],B0)*->true;([H|Args]=B0)), + light_eval(Depth,Self,B0,B). + %(eval(Eq,RetType,Depth,Self,B,Y);eval_match(Eq,RetType,Depth,Self,Y)). + +% Use the first template match +eval_65(Eq,_RetType,Depth,Self,[H|Args],B):- fail, + Eq='=', + (metta_defn(Eq,Self,[H|Template],B0),Args=Template), + light_eval(Depth,Self,B0,B). + + +light_eval(_Depth,_Self,B,B). + +not_template_arg(TArg):- var(TArg), !, \+ attvar(TArg). +not_template_arg(TArg):- atomic(TArg),!. +%not_template_arg(TArg):- is_list(TArg),!,fail. + + +% Has argument that is headed by the same function +eval_67(Eq,RetType,Depth,Self,[H1|Args],Res):- + notrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + notrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_60(Eq,RetType,Depth,Self,[H1|NewArgs],Res). + +eval_67(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + notrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to eval +eval_67(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + notrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + notrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_60(Eq,RetType,Depth,Self,[F|Temp],Res). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AGREGATES +% ================================================================= +% ================================================================= +% ================================================================= + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). + +%bagof_eval(Eq,RetType,Depth,Self,X,L):- bagof_eval(Eq,RetType,_RT,Depth,Self,X,L). + + +%bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. +bagof_eval(_Eq,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(Eq,RetType,Depth,Self,X,L):- + findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). + +setof_eval(Depth,Self,X,L):- setof_eval('=',_RT,Depth,Self,X,L). +setof_eval(Eq,RetType,Depth,Self,X,S):- bagof_eval(Eq,RetType,Depth,Self,X,L), + sort(L,S). + + +eval_ne(Eq,RetType,Depth,Self,X,O):- + eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E), O=E. + +:- ensure_loaded(metta_subst). + + diff --git a/metta_vspace/pyswip/metta_eval.pl.old b/metta_vspace/pyswip-want/metta_eval.pl.old similarity index 100% rename from metta_vspace/pyswip/metta_eval.pl.old rename to metta_vspace/pyswip-want/metta_eval.pl.old diff --git a/metta_vspace/pyswip/metta_eval.pl.save b/metta_vspace/pyswip-want/metta_eval.pl.save similarity index 100% rename from metta_vspace/pyswip/metta_eval.pl.save rename to metta_vspace/pyswip-want/metta_eval.pl.save diff --git a/metta_vspace/pyswip-want/metta_eval.prev b/metta_vspace/pyswip-want/metta_eval.prev new file mode 100755 index 00000000..65c8ad88 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_eval.prev @@ -0,0 +1,1549 @@ +% +% post match modew +%:- style_check(-singleton). + +self_eval0(X):- \+ callable(X),!. +self_eval0(X):- is_valid_nb_state(X),!. +%self_eval0(X):- string(X),!. +%self_eval0(X):- number(X),!. +%self_eval0([]). +self_eval0(X):- is_metta_declaration(X),!. +self_eval0(X):- is_list(X),!,fail. +self_eval0(X):- typed_list(X,_,_),!. +%self_eval0(X):- compound(X),!. +%self_eval0(X):- is_ref(X),!,fail. +self_eval0('True'). self_eval0('False'). % self_eval0('F'). +self_eval0('Empty'). +self_eval0(X):- atom(X),!, \+ nb_current(X,_),!. + +self_eval(X):- notrace(self_eval0(X)). + +:- set_prolog_flag(access_level,system). +hyde(F/A):- functor(P,F,A), redefine_system_predicate(P),'$hide'(F/A), '$iso'(F/A). +:- 'hyde'(option_else/2). +:- 'hyde'(atom/1). +:- 'hyde'(quietly/1). +:- 'hyde'(notrace/1). +:- 'hyde'(var/1). +:- 'hyde'(is_list/1). +:- 'hyde'(copy_term/2). +:- 'hyde'(nonvar/1). +:- 'hyde'(quietly/1). +%:- 'hyde'(option_value/2). + + +is_metta_declaration([F|_]):- F == '->',!. +is_metta_declaration([F,_,_|T]):- T ==[], is_metta_declaration_f(F). + +is_metta_declaration_f(F):- F == ':', !. +is_metta_declaration_f(F):- F == '=', !, + \+ (current_self(Space), is_user_defined_head_f(Space,F)). + +(F==':'; + (F=='=', \+ + \+ (current_self(Space), is_user_defined_head_f(Space,F)))). +% is_metta_declaration([F|T]):- is_list(T), is_user_defined_head([F]),!. + +:- nb_setval(self_space, '&self'). +evals_to(XX,Y):- Y=@=XX,!. +evals_to(XX,Y):- Y=='True',!, is_True(XX),!. + +current_self(Space):- nb_current(self_space,Space). + +do_expander('=',_,X,X):-!. +do_expander(':',_,X,Y):- !, get_type(X,Y)*->X=Y. + +'get_type'(Arg,Type):- 'get-type'(Arg,Type). + + + + +eval_args(X,Y):- current_self(Space), + rtrace_on_existence_error(eval(100,Space,X,Y)). +eval_args(Depth,Self,X,Y):- locally(set_prolog_flag(gc,false),rtrace_on_existence_error(eval(Depth,Self,X,Y))). +eval_args(Eq,RetType,Depth,Self,X,Y):- + locally(set_prolog_flag(gc,true), + rtrace_on_existence_error( + eval(Eq,RetType,Depth,Self,X,Y))). + +%eval(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval(Eq,RetType,X)),fail. +eval(Depth,Self,X,Y):- eval('=',_RetType,Depth,Self,X,Y). + +%eval(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!, + get_type(Depth,Self,Y,RetType), !, + eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). + +eval(_Eq,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. + +eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], number(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. + +/* +eval(Eq,RetType,Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + notrace((D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,[F|X],Y). +*/ + +eval(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + +eval(Eq,RetType,Depth,Self,X,Y):- + %notrace(allow_repeats_eval_(X)), + !, + eval_11(Eq,RetType,Depth,Self,X,Y). +eval(Eq,RetType,Depth,Self,X,Y):- + nop(notrace((no_repeats_var(YY)), + D1 is Depth-1)),!, + eval_11(Eq,RetType,D1,Self,X,Y), + notrace(( \+ (Y\=YY))). + +allow_repeats_eval_(_):- !. +allow_repeats_eval_(_):- option_value(no_repeats,false),!. +allow_repeats_eval_(X):- \+ is_list(X),!,fail. +allow_repeats_eval_([F|_]):- atom(F),allow_repeats_eval_f(F). +allow_repeats_eval_f('superpose'). +allow_repeats_eval_f('collapse'). + +debugging_metta(G):- notrace((is_debugging((eval))->ignore(G);true)). + + +:- nodebug(metta(eval)). + + +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,false)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + + +eval_99(Eq,RetType,Depth,Self,X,Y):- + eval_20(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Depth,Self,X,Y). + + + +eval_00(_Eq,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +eval_00(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(Eq,RetType,Depth,Self,X,YO):- + Depth2 is Depth-1, + copy_term(X, XX), + eval_20(Eq,RetType,Depth,Self,X,M), + ((M\=@=XX, \+ self_eval(M))-> + eval_00(Eq,RetType,Depth2,Self,M,Y);Y=M), + once(if_or_else(subst_args(Eq,RetType,Depth2,Self,Y,YO), + if_or_else(finish_eval(Depth2,Self,Y,YO), + Y=YO))). + + + +eval_11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, + D1 is Depth-1, + eval_00(Eq,RetType,D1,Self,X,Y). +eval_11(Eq,RetType,Depth,Self,X,Y):- + notrace(( + + flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,eval(Self,X,'$VAR'('RET')),depth(DR)))))), + Ret=retval(fail))), + + call_cleanup(( + dcall(eval_00(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + + (PrintRet==1 -> indentq(Depth,'<--'(EX,Ret)) ; + mnotrace(ignore(((Y\=@=X, + if_t(DR<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret)))))))))), + + (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). + + + +eval_15(Eq,RetType,Depth,Self,X,Y):- !, + eval_20(Eq,RetType,Depth,Self,X,Y). + +eval_15(Eq,RetType,Depth,Self,X,Y):- + ((eval_20(Eq,RetType,Depth,Self,X,Y), + if_t(var(Y),dmsg((eval_20(Eq,RetType,Depth,Self,X,Y),var(Y)))), + nonvar(Y))*->true;(eval_failed(Depth,Self,X,Y),fail)). + + + + + + + + + + + + + +:- discontiguous eval_20/6. +:- discontiguous eval_40/6. +%:- discontiguous eval_30fz/5. +%:- discontiguous eval_31/5. +%:- discontiguous eval_60/5. + +eval_20(Eq,RetType,_Dpth,_Slf,Name,Y):- + atom(Name), !, + (nb_current(Name,X)->do_expander(Eq,RetType,X,Y); + Y = Name). + + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,do_expander(Eq,RetType,X,Y). + +% ================================================================= +% ================================================================= +% ================================================================= +% VAR HEADS/ NON-LISTS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. +%eval_20(Eq,RetType,_Dpth,Self,[X|T],Y):- T==[], atom(X), +% \+ is_user_defined_head_f(Self,X), +% do_expander(Eq,RetType,X,YY),!,Y=[YY]. + +eval_20(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + +eval_20(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). + +eval_20(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% TRACE/PRINT +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,_Dpth,_Slf,['repl!'],Y):- !, repl,check_returnval(Eq,RetType,Y). +eval_20(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['rtrace!',Cond],Res):- !, rtrace(eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['trace',Cond],Res):- !, with_debug(eval,eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval(Eq,RetType,Depth,Self,Cond,Res)). +eval_20(Eq,RetType,Depth,Self,['print',Cond],Res):- !, eval(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), + format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). + +%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). + +eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H), !,Y=List,do_expander(Eq,RetType,Y,YY). + +eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, + eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB), + append(AA,BB,OO). +eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), + ((eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB))), + ((AA+BB)\=@=(A+B)), + eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. + + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% UNIT TESTING/assert +% ================================================================= +% ================================================================= +% ================================================================= + + +eval_20(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +eval_20(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, eval(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +eval_20(Eq,RetType,Depth,Self,['assertEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected(_)],YY]). + +eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqual',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_20(Eq,RetType,Depth,Self,['assertEqualToResult',X,Y],RetVal):- !, + loonit_assert_source_tf( + ['assertEqualToResult',X,Y], + (bagof_eval(Eq,RetType,Depth,Self,X,XX), sort(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + + +loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', trace_on_pass);(TF='False', trace_on_fail)), + with_debug(metta(eval),time_eval('Trace',OrigGoal)))). + +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L). +%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- \+ compound(C),!,L=C. +%unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). + +%unify_lists(C,L):- \+ compound(C),!,L=C. +%unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists(L,L):-!. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +%s_empty(X):- var(X),!. +s_empty(X):- var(X),!,fail. +is_empty('Empty'). +is_empty([]). +is_empty([X]):-!,is_empty(X). +has_let_star(Y):- sub_var('let*',Y). + +equal_enough_for_test(X,Y):- is_empty(X),!,is_empty(Y). +equal_enough_for_test(X,Y):- has_let_star(Y),!,\+ is_empty(X). +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough_for_test2(XX,YY),!. +equal_enough_for_test2(X,Y):- equal_enough(X,Y). + +equal_enouf(R,V):- is_ftVar(R), is_ftVar(V), R=V,!. +equal_enouf(X,Y):- is_empty(X),!,is_empty(Y). +equal_enouf(R,V):- R=@=V, R=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l([S1,V1|_],[S2,V2|_]):- S1 == 'State',S2 == 'State',!, equal_enouf(V1,V2). +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. + +set_last_error(_). + +% ================================================================= +% ================================================================= +% ================================================================= +% SPACE EDITING +% ================================================================= +% ================================================================= +% ================================================================= +% do_metta(_Who,What,Where,PredDecl,_TF):- do_metta(Where,What, PredDecl). +/* +eval_20(Eq,RetType,_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L1),length(L1,C1),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C1+C2. +eval_20(Eq,RetType,_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). +*/ +eval_20(Eq,RetType,Depth,Self,[Op,Space|Args],Res):- is_space_op(Op),!, + eval_space_start(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space_start(Eq,RetType,_Depth,_Self,[_Op,_Other,Atom],Res):- + (Atom == [] ; Atom =='Empty'; Atom =='Nil'),!,return_empty('False',Res),check_returnval(Eq,RetType,Res). + +eval_space_start(Eq,RetType,Depth,Self,[Op,Other|Args],Res):- + into_space(Depth,Self,Other,Space), + eval_space(Eq,RetType,Depth,Self,[Op,Space|Args],Res). + + +eval_space(Eq,RetType,_Dpth,_Slf,['add-atom',Space,PredDecl],Res):- !, + do_metta(python,load,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['remove-atom',Space,PredDecl],Res):- !, + do_metta(python,unload,Space,PredDecl,TF),return_empty(TF,Res),check_returnval(Eq,RetType,Res). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-count',Space],Count):- !, + ignore(RetType='Number'),ignore(Eq='='), + findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + length(Atoms,Count). + +eval_space(Eq,RetType,_Dpth,_Slf,['atom-replace',Space,Rem,Add],TF):- !, + copy_term(Rem,RCopy), as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Space,load,Add)),TF), + check_returnval(Eq,RetType,TF). + +eval_space(Eq,RetType,_Dpth,_Slf,['get-atoms',Space],Atom):- !, + ignore(RetType='Atom'), get_metta_atom_from(Space, Atom), check_returnval(Eq,RetType,Atom). + +/* +get_atoms(_Dpth,_Slf,Other,Atom):- Other=='&self',!,get_metta_atom_from(Other, Atom). +% get_atoms_fail(Depth,Self,Other,Atom):- fail, is_asserted_space(Other),!, get_metta_atom(Eq,Other,Atom). +get_atoms(Depth,Self,Other,AtomO):- + into_space(Depth,Self,Other,Space), + once((space_to_Space(Depth,Self,Space,SpaceC), + into_listoid(SpaceC,AtomsL))), + %no_repeat_var(NRAtom), + dcall((member(Atom,AtomsL), + %Atom = NRAtom, + AtomO=Atom)). + +space_to_Space(_Dpth,_Slf,Space,SpaceC):- compound(Space),functor(Space,_,1),arg(1,Space,L),is_list(L),!,SpaceC=Space. +space_to_Space(_Dpth,_Slf,Space,SpaceC):- findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + SpaceC = 'hyperon::space::DynSpace'(Atoms). +*/ + +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter(Eq,Depth,Space,Goal). +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- into_space(Self,Other,Space),!, (metta_atom_iter(Eq,Depth,Space,Goal)*->true;Else=Template). + +% Match-ELSE +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- !, + ((eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template), + \+ return_empty([],Template))*->true;Template=Else). +% Match-TEMPLATE + +eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Res):- !, + metta_atom_iter(Eq,Depth,Self,Other,Goal), + Template=Res. + %finish_eval(Eq,RetType,Depth,Self,Template,Res). +/* + dcall(( % copy_term(Goal+Template,CGoal+CTemplate), + catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal),E, + ((wdmsg(catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal))=E)), + rtrace(try_match(Eq,RetType,Depth,Self,Other,Goal)))))), + %print(Template), + finish_eval(Eq,RetType,Depth,Self,Template,Res). + +try_match(Eq,RetType,Depth,Self,Space,Goal):- !, + % into_space(Depth,Self,Other,Space), + metta_atom_iter(Eq,Depth,Self,Space,Goal). + +%try_match(Depth,Self,Other,Goal,_Template):- get_atoms(Depth,Self,Other,Goal). % Template=Res. +metta_atom_iter(Eq,Depth,Other,Goal):- + current_self(Self), + metta_atom_iter(Eq,Depth,Self,Other,Goal). + +metta_atom_iter_fail(Depth,_Slf,Other,[Equal,[F|H],B]):- fail, '=' == Equal,!, % trace, + dcall(metta_defn(Eq,Other,[F|HH],BB)), + once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)), + once(eval_until_unify(Eq,RetType,Depth,Other,B,BB)). +*/ + +metta_atom_iter(Eq,_Depth,_Slf,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + (metta_defn(Eq,Other,[F|H],B)). % once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +%metta_atom_iter(Eq,Depth,_Slf,Other,[Equal,[F|H],B]):- '=' == Equal,!, % trace, + % dcall(metta_defn(Eq,Other,[F|HH],B)), once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). + +metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. +% And +metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, + (Y==[] -> true ; ( D2 is Depth -1, Y = [H|T], metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). + +metta_atom_iter(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). + +% is this OK? +metta_atom_iter(Eq,Depth,Self,Other,H):- metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_iter(Eq,D2,Self,Other,B). +%metta_atom_iter_l2(Depth,Self,Other,H):- metta_atom_iter(Eq,Depth,Self,Other,H). +%$metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. + +eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). + + +/* + +metta_atom_iter(Eq,_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B='True')). + +metta_atom_iter(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter(Eq,D2,Other,B). +metta_atom_iter(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(Eq,D2,Self,X),metta_atom_iter(Eq,D2,Self,[And|Y]). +*/ +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. +*/ +%metta_atom_iter_ref(Other,[Eq,H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). +metta_atom_iter_ref(Other,H,Ref):-clause(asserted_metta_atom(Other,H),true,Ref). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CASE/SWITCH +% ================================================================= +% ================================================================= +% ================================================================= +% Macro: case +:- nodebug(metta(case)). +/* +!(assertEqualToResult + (case + (Link $X B) + ( ( (g $Y) + (Link $X $Y)))) ()) +*/ +/* +eval_20(Eq,RetType,Depth,Self,['case',A,CL],Value):- !, +((eval(Depth,Self,A,AA), + if_trace((case),(writeqln('switch'(A)=AA))), + eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value))*->true; +Value=found_none). + +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + must_det_ll(into_case_list(1,CL,KVs)), + select_switch(Depth,Self,AA,KVs,Match,Value), + if_trace((case),(writeqln('matched'=Match))), + if_trace((case),(writeqln('result'=Value))), + check_returnval(Value,Eq,RetType). +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + select(['%void%',_],CL,Rest), Rest == [],!, Value =[]. +eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- + select(['%void%',Value],CL,Rest),!. + + +select_switch(Depth,_Self,_A,_Cases,_Match,_Value):- Depth<1,!,fail. +select_switch(Depth,Self,A,Cases,Match,Value):- + Depth2 is Depth -1, + ((if_trace((case),(writeqln('select-1'=A))),select_case(Depth2,Self,A,Cases,Match,Value))*->true; + ((eval_complete_change(Eq,_RetType,Depth2,Self,A,AA),if_trace((case),(writeqln('select-2'=AA))), + select_switch(Depth2,Self, AA,Cases,Match,Value))*->true; + (best_key('%void%',Cases,Match,Value)))). + + select_case(Depth,Self,AA,Cases,Match,Value):- + ((best_key(AA,Cases,Match,Value) *-> true ; + ((maybe_special_keys(Depth,Self,Cases,CasES), best_key(AA,CasES,Match,Value)) *-> true; + (fail)))). + + best_key(AA,Cases,Match,Value):- + ((member(Match-Value,Cases),AA ==Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases),AA=@=Match,must_det_ll(AA = Match))->true; + ((member(Match-Value,Cases), AA=Match))->true; + ((member(Match-Value,Cases),unify_enough(AA,Match))->true))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(N,[SV|CL],[S-V|CASES]):- + must_det_ll(is_case(S,SV,V)), + if_trace((case),(format('~N'), writeqln('case'(N)=(S>V)))), + N2 is N+1, + into_case_list(N2,CL,CASES). + into_case_list(_,[],[]). + + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + %maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- fail,eval(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + fail, maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + +*/ + +% if there is only a void then always return nothing for each Case +eval_20(Eq,_RetType,Depth,Self,['case',A,[[Void,_]]],Res):- + '%void%' == Void, + eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. + +% if there is nothing for case just treat like a collapse +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- + %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + once(eval(Eq,_RetType2,Depth,Self,A,_)), + return_empty([],Empty). + +% Macro: case +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- + must_det_ll(T==[]), + into_case_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case(Key,Case0,Value), + if_trace(metta(case),(format('~N'),writeqln(c(Nth,Key)=Value))))),KVs),!, + eval_case(Eq,RetType,Depth,Self,A,KVs,Res). + +eval_case(Eq,CaseRetType,Depth,Self,A,KVs,Res):- + ((eval(Eq,_UnkRetType,Depth,Self,A,AA), + if_trace((case),(writeqln('case'=A))), + if_trace(metta(case),writeqln('switch'=AA)), + (select_case(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval(Eq,CaseRetType,Depth,Self,Value,Res). + + select_case(Depth,Self,AA,Cases,Value):- + (best_key(AA,Cases,Value) -> true ; + (maybe_special_keys(Depth,Self,Cases,CasES), + (best_key(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key(AA,Cases,Value):- + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match))). + + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. + into_case_list(CASES,CASES):- is_list(CASES),!. + is_case(AA,[AA,Value],Value):-!. + is_case(AA,[AA|Value],Value). + + maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(Depth,Self,[_|KVI],KVO):- + maybe_special_keys(Depth,Self,KVI,KVO). + maybe_special_keys(_Depth,_Self,[],[]). + + +% ================================================================= +% ================================================================= +% ================================================================= +% COLLAPSE/SUPERPOSE +% ================================================================= +% ================================================================= +% ================================================================= + + + +%[collapse,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['collapse',List],Res):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res). + +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call_ndet(Body,DET), + nb_setarg(1,Do_more_defs,false), + (DET==true -> ! ; true). + + +eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +/* +eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. + + +eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +*/ + +%[superpose,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['superpose',List],Res):- !, + (((is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['superpose',UList],Res) + ; ((member(E,List),eval(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))), + \+ Res = 'Empty'. + +%[sequential,[1,2,3]] +eval_20(Eq,RetType,Depth,Self,['sequential',List],Res):- !, + (((fail,is_user_defined_head(Eq,Self,List) ,eval(Eq,RetType,Depth,Self,List,UList), List\=@=UList) + *-> eval_20(Eq,RetType,Depth,Self,['sequential',UList],Res) + ; ((member(E,List),eval_ne(Eq,RetType,Depth,Self,E,Res))*->true;return_empty([],Res)))). + + +get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). +get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). +eval20_failed(Eq,RetType,Depth,Self, Term, Res):- + mnotrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval(Eq,RetType,Depth,Self, Term, Res). + + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- + mnotrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), + eval(Eq,RetType,Depth,Self, Term, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +eval_20(_Eq,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Eq,_RetType1,Depth,Self,['nop',Expr], Empty):- !, + ignore(eval('=',_RetType2,Depth,Self,Expr,_)), + return_empty([], Empty). + +eval_20(Eq,_RetType1,Depth,Self,['do',Expr], Empty):- !, + forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), + %eval_ne(Eq,_RetType2,Depth,Self,Expr,_),!, + return_empty([],Empty). + +max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> eval(Eq,RetType,Depth,Self,Then,Res) + ; eval(Eq,RetType,Depth,Self,Else,Res)). + +eval_20(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +eval_20(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + eval(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> eval(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +eval_20(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + +% ================================================================= +% ================================================================= +% ================================================================= +% LET/LET* +% ================================================================= +% ================================================================= +% ================================================================= + + + +eval_until_unify(_Eq,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). + +eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). +%eval_until_eq(Eq,RetType,Depth,Self,X,Y):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +%eval_until_eq(Eq,RetType,Depth,Self,Y,X):- var(Y),!,eval_in_steps_or_same(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). +eval_until_eq(_Eq,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + ((var(EX);var(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). +eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), + h((is_list(EX);is_list(EY)),eval_until_eq(Eq,RetType,Depth,Self,EX,EY)), + maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). + + eval_1change(Eq,RetType,Depth,Self,EX,EXX):- + eval_20(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- + eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. + +eval_in_steps_some_change(_Eq,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). +eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), + eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, + append(L,[EXX|R],XX),eval_in_steps_or_same(Eq,RetType,Depth,Self,XX,Y). + +eval_in_steps_or_same(Eq,RetType,Depth,Self,X,Y):-eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y). +eval_in_steps_or_same(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). + + % (fail,return_empty([],Template))). + + +eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval(Eq,RetType,Depth,Self,A5,AE), AE=A)), + eval(Eq,RetType,Depth,Self,AA,OO). +%eval_20(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,eval(Eq,RetType,Depth,Self,A5,A),eval(Eq,RetType,Depth,Self,AA,AAO). +eval_20(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, eval(Eq,RetType,Depth,Self,Body,RetVal). +eval_20(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_20(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + +% ================================================================= +% ================================================================= +% ================================================================= +% CONS/CAR/CDR +% ================================================================= +% ================================================================= +% ================================================================= + + + +into_pl_list(Var,Var):- var(Var),!. +into_pl_list(Nil,[]):- Nil == 'Nil',!. +into_pl_list([Cons,H,T],[HH|TT]):- Cons == 'Cons', !, into_pl_list(H,HH),into_pl_list(T,TT),!. +into_pl_list(X,X). + +into_metta_cons(Var,Var):- var(Var),!. +into_metta_cons([],'Nil'):-!. +into_metta_cons([Cons, A, B ],['Cons', AA, BB]):- 'Cons'==Cons, no_cons_reduce, !, + into_metta_cons(A,AA), into_metta_cons(B,BB). +into_metta_cons([H|T],['Cons',HH,TT]):- into_metta_cons(H,HH),into_metta_cons(T,TT),!. +into_metta_cons(X,X). + +into_listoid(AtomC,Atom):- AtomC = [Cons,H,T],Cons=='Cons',!, Atom=[H,[T]]. +into_listoid(AtomC,Atom):- is_list(AtomC),!,Atom=AtomC. +into_listoid(AtomC,Atom):- typed_list(AtomC,_,Atom),!. + +:- if( \+ current_predicate( typed_list / 3 )). +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +:- endif. + +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + +%eval_20(Eq,RetType,Depth,Self,['flatten'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + + +eval_20(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR_Y):- !, Atom=[CAR|_],!,do_expander(Eq,RetType,CAR,CAR_Y). +eval_20(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR_Y):- !, Atom=[_|CDR],!,do_expander(Eq,RetType,CDR,CDR_Y). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + +eval_20(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval(Eq,RetType,Depth,Self,A,AA), eval(Eq,RetType,Depth,Self,B,BB). + + + +% ================================================================= +% ================================================================= +% ================================================================= +% STATE EDITING +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_20(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_20(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + +/* +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_nb_space,new_space,init_space). +space_type_method(is_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_nb_space,add_atom,add_nb_atom). +space_type_method(is_nb_space,remove_atom,'change-space!'). +space_type_method(is_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_nb_space,atom_count,atom_nb_count). +space_type_method(is_nb_space,get_atoms,'get-space'). +space_type_method(is_nb_space,atom_iter,atom_nb_iter). +*/ + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +% ================================================================= +% ================================================================= +% ================================================================= +% GET-TYPE +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(Eq,RetType,Depth,Self,['get-type',Val],TypeO):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, + do_expander(Eq,RetType,Type,TypeO). + + + +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% IMPORT/BIND +% ================================================================= +% ================================================================= +% ================================================================= +nb_bind(Name,Value):- nb_current(Name,Was),same_term(Value,Was),!. +nb_bind(Name,Value):- nb_setval(Name,Value),!. +eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- + (( into_space(Depth,Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal))), + check_returnval(Eq,RetType,RetVal). %RetVal=[]. +eval_20(Eq,RetType,_Depth,_Slf,['bind!',Other,['new-space']],RetVal):- atom(Other),!,assert(was_asserted_space(Other)), + return_empty([],RetVal), check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,eval(Eq,RetType,Depth,Self,Expr,Value), + nb_bind(Name,Value), return_empty(Value,RetVal))), + check_returnval(Eq,RetType,RetVal). +eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), + set_option_value(Name,Value))), return_empty(Value,RetVal), + check_returnval(Eq,RetType,RetVal))). +eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). + + +nd_ignore(Goal):- call(Goal)*->true;true. + + + + + + + + + +% ================================================================= +% ================================================================= +% ================================================================= +% AND/OR +% ================================================================= +% ================================================================= +% ================================================================= + +is_True(T):- T\=='False',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and(','). +is_and(S):- is_and(S,_). + +is_and(S,_):- \+ atom(S),!,fail. +is_and('and','True'). +is_and('and2','True'). +is_and('#COMMA','True'). is_and(',','True'). % is_and('And'). + +eval_20(Eq,RetType,_Dpth,_Slf,[And],True):- is_and(And,True),!,check_returnval(Eq,RetType,True). +eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, as_tf(( + eval_args(Eq,RetType,Depth,Self,X,True),eval_args(Eq,RetType,Depth,Self,Y,True)),TF). +eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, + eval_args(Eq,RetType,Depth,Self,X,True). +eval_20(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, + eval_args(Eq,RetType,Depth,Self,X,TF1), \+ \+ is_True(TF1), + eval_args(Eq,RetType,Depth,Self,[And|Y],TF). + +eval_20(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, + as_tf((eval_args(Eq,RetType,Depth,Self,X,'True');eval_args(Eq,RetType,Depth,Self,Y,'True')),TF). + + +% ================================================================= +% ================================================================= +% ================================================================= +% MeTTaLog Extras +% ================================================================= +% ================================================================= +% ================================================================= + +eval_20(_Eq,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). +eval_20(Eq,RetType,Depth,Self,['eval',S], Res):- !, eval(Eq,RetType,Depth,Self,S, Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% DATA FUNCTOR +% ================================================================= +% ================================================================= +% ================================================================= +eval20_failked(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- + nonvar(V),is_metta_data_functor(V),is_list(VI),!, + maplist(eval(Eq,RetType,Depth,Self),VI,VO). + + +% ================================================================= +% ================================================================= +% ================================================================= +% EVAL FAILED +% ================================================================= +% ================================================================= +% ================================================================= +eval_20(Eq,RetType,Depth,Self,X,Y):- + (eval_40(Eq,RetType,Depth,Self,X,M)*-> + M=Y ; + % finish_eval(Depth,Self,M,Y); + (eval_failed(Depth,Self,X,Y)*->true;X=Y)). + +eval_failed(Depth,Self,T,TT):- + finish_eval(Depth,Self,T,TT). + +finish_eval(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +finish_eval(_Dpth,_Slf,[],[]):-!. +%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%finish_eval(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +finish_eval(Depth,Self,[H|T],[HH|TT]):- !, + eval(Depth,Self,H,HH), + finish_eval(Depth,Self,T,TT). +finish_eval(Depth,Self,T,TT):- eval(Depth,Self,T,TT). + + %eval(Eq,RetType,Depth,Self,X,Y):- eval_20(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. + +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%eval_20(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. + +% Kills zero arity functions eval_20(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval(Eq,RetType,Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_40(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +eval_40(_Eq,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval(Eq,RetType,Depth,Self,[F|Temp],Res). + + +% ================================================================= +% ================================================================= +% ================================================================= +% PLUS/MINUS +% ================================================================= +% ================================================================= +% ================================================================= +eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). + +% ================================================================= +% ================================================================= +% ================================================================= +% METTLOG PREDEFS +% ================================================================= +% ================================================================= +% ================================================================= + +eval_40(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), + (is_list(LL)->length(LL,Res);Res=1), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). + +eval_40(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). +eval_40(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). + +% user defined function +eval_40(Eq,RetType,Depth,Self,[H|PredDecl],Res):- + mnotrace(is_user_defined_head(Self,H)),!, + eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). + +eval_40(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, + suggest_type(RetType,'Bool'), + eq_unify(Eq,_SharedType, X, Y, Res). + +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). + + +suggest_type(_RetType,_Bool). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- is_special_op(AE),!, + eval_70(Eq,RetType,Depth,Self,[AE|More],Res), + check_returnval(Eq,RetType,Res). + +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- + maplist(must_eval_args(Eq,_,Depth,Self),More,Adjusted), + eval_70(Eq,RetType,Depth,Self,[AE|Adjusted],Res), + check_returnval(Eq,RetType,Res). + +must_eval_args(Eq,RetType,Depth,Self,More,Adjusted):- + (eval_args(Eq,RetType,Depth,Self,More,Adjusted)*->true; + (with_debug(eval,eval_args(Eq,RetType,Depth,Self,More,Adjusted))*-> true; + ( + nl,writeq(eval_args(Eq,RetType,Depth,Self,More,Adjusted)),writeln('.'), + (More=Adjusted -> true ; + (trace, throw(must_eval_args(Eq,RetType,Depth,Self,More,Adjusted))))))). + + + + +eval_70(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call(Body),nb_setarg(1,Do_more_defs,false). + + +% ================================================================= +% ================================================================= +% ================================================================= +% inherited by system +% ================================================================= +% ================================================================= +% ================================================================= +is_system_pred(S):- atom(S),atom_concat(_,'!',S). + + + +eval_80(_Eq,_RetType,_Dpth,_Slf,LESS,Res):- + notrace((ground(LESS),once((eval_selfless(LESS,Res),mnotrace(LESS\==Res))))),!. + + +% predicate inherited by system +eval_80(Eq,RetType,_Depth,_Self,[AE|More],TF):- + is_system_pred(AE), + length(More,Len), + is_syspred(AE,Len,Pred), + %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted), + More = Adjusted, + catch_warn(efbug(show_call,eval_call(apply(Pred,Adjusted),TF))), + check_returnval(Eq,RetType,TF). + +:- if( \+ current_predicate( adjust_args / 2 )). + + :- discontiguous eval_80/6. + +is_user_defined_goal(Self,Head):- + is_user_defined_head(Self,Head). + +:- endif. + +eval_call(S,TF):- + s2p(S,P), !, + dmsg(eval_call(P,'$VAR'('TF'))),as_tf(P,TF). + +eval_80(Eq,RetType,_Depth,_Self,[AE|More],Res):- + is_system_pred(AE), + length([AE|More],Len), + is_syspred(AE,Len,Pred), + %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted),!, + More = Adjusted, + append(Adjusted,[Res],Args),!, + efbug(show_call,catch_warn(apply(Pred,Args))), + check_returnval(Eq,RetType,Res). + +:- if( \+ current_predicate( check_returnval / 3 )). +check_returnval(_,_RetType,_TF). +:- endif. + +:- if( \+ current_predicate( adjust_args / 5 )). +adjust_args(_Depth,_Self,_V,VI,VI). +:- endif. + +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- + eval_67(Eq,RetType,Depth,Self,PredDecl,Res). + + + +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +catch_warn(G):- quietly(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch_err(G,error(_,_),fail)). + + +as_tf(G,TF):- G\=[_|_], catch_nowarn((call(G)*->TF='True';TF='False')). +%eval_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +%eval_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_selfless(['<=',X,Y],TF):-!,as_tf(X='). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + +*/ +% ================================================================= +% ================================================================= +% ================================================================= +% USER DEFINED FUNCTIONS +% ================================================================= +% ================================================================= +% ================================================================= + +call_ndet(Goal,DET):- call(Goal),deterministic(DET). + +eval_60(Eq,RetType,Depth,Self,H,B):- + (eval_64(Eq,RetType,Depth,Self,H,B)*->true; + (fail,eval_67(Eq,RetType,Depth,Self,H,B))). + + +%eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Eq,Self,H,B). +eval_64(Eq,_RetType,_Dpth,Self,H,B):- + Eq='match', dcall(metta_atom(Self,H)),B=H. + + +eval_64(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + [Left|T1] \=@= [[H|Start]|T1], + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- % no weird template matchers + % forall(metta_defn(Eq,Self,[H|Template],_), + % maplist(not_template_arg,Template)), + Eq='=', + (metta_defn(Eq,Self,[H|Args],B0)*->true;(fail,[H|Args]=B0)), + light_eval(Depth,Self,B0,B). + %(eval(Eq,RetType,Depth,Self,B,Y);metta_atom_iter(Depth,Self,Y)). +% Use the first template match +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- fail, + Eq='=', + (metta_defn(Eq,Self,[H|Template],B0),Args=Template), + light_eval(Depth,Self,B0,B). + + +light_eval(_Depth,_Self,B,B). + +not_template_arg(TArg):- var(TArg), !, \+ attvar(TArg). +not_template_arg(TArg):- atomic(TArg),!. +%not_template_arg(TArg):- is_list(TArg),!,fail. + + +% Has argument that is headed by the same function +eval_67(Eq,RetType,Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_60(Eq,RetType,Depth,Self,[H1|NewArgs],Res). + +eval_67(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + eval(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to eval +eval_67(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_60(Eq,RetType,Depth,Self,[F|Temp],Res). + +%eval_67(Eq,RetType,Depth,Self,X,Y):- (eval_68(Eq,RetType,Depth,Self,X,Y)*->true;metta_atom_iter(Depth,Self,[=,X,Y])). +/* +eval_67_fail(Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. +*/ + +%eval_68(Eq,RetType,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +%eval_68(Eq,RetType,_Dpth,Self,[H|T1],Y):- metta_defn(Eq,Self,[H|T1],Y). +%eval_68(Eq,RetType,_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +%eval_68(Eq,RetType,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Eq,Self,Left,Y). + + +%eval_6(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Eq,Self,['ift',R,Then],Become),eval(Eq,RetType,Depth,Self,CR,R),eval(Eq,RetType,Depth,Self,Then,_True),eval(Eq,RetType,Depth,Self,Become,RO). + + +%not_compound(Term):- \+ is_list(Term),!. +%eval_40(Eq,RetType,Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_645(Depth,Self,Term,Res). + + +% function inherited by system +/* +eval_80(Eq,RetType,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(eval(Eq,ArgTypes,Depth,Self),X,Y),!, + eval_85(Depth,Self,[F|Y],FY). + +eval_80(Eq,RetType,Depth,Self,FX,FY):- eval_85(Depth,Self,FX,FY). + +eval_85(Depth,Self,[AE|More],TF):- length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_86(Depth,Self,[AE|More],TF). +eval_86(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). +*/ +%eval_80(Eq,RetType,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval(Eq,RetType,Depth,Self,[F2|X2],Y2),eval(Eq,RetType,Depth,Self,X1,Y1). + + +% ================================================================= +% ================================================================= +% ================================================================= +% AGREGATES +% ================================================================= +% ================================================================= +% ================================================================= + +cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). + +%bagof_eval(Eq,RetType,Depth,Self,X,L):- bagof_eval(Eq,RetType,_RT,Depth,Self,X,L). + + +%bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. +bagof_eval(_Eq,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(Eq,RetType,Depth,Self,X,L):- + findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). + +setof_eval(Depth,Self,X,L):- setof_eval('=',_RT,Depth,Self,X,L). +setof_eval(Eq,RetType,Depth,Self,X,S):- bagof_eval(Eq,RetType,Depth,Self,X,L), + sort(L,S). + + +eval_ne(Eq,RetType,Depth,Self,X,E):- + eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E). + + + + +:- ensure_loaded(metta_subst). diff --git a/metta_vspace/pyswip-want/metta_interp.new b/metta_vspace/pyswip-want/metta_interp.new new file mode 100755 index 00000000..dd8ae458 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_interp.new @@ -0,0 +1,1920 @@ +:- encoding(iso_latin_1). +:- multifile(is_metta_data_functor/1). +:- dynamic(is_metta_data_functor/1). +:- multifile(is_nb_space/1). +:- dynamic(is_nb_space/1). +%:- '$set_source_module'('user'). +:- set_stream(user_input,tty(true)). +:- use_module(library(readline)). +:- use_module(library(editline)). +:- use_module(library(filesex)). +:- use_module(library(shell)). +%:- use_module(library(tabling)). +:- use_module(library(system)). +:- ensure_loaded(metta_compiler). +%:- ensure_loaded(metta_types). +:- ensure_loaded(metta_data). +:- ensure_loaded(metta_space). +:- ensure_loaded(metta_eval). +:- set_stream(user_input,tty(true)). +:- set_prolog_flag(encoding,iso_latin_1). +:- set_prolog_flag(encoding,utf8). +%:- set_prolog_flag(encoding,octet). +/* +Now PASSING NARS.TEC:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip\metta_interp.pl +C:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip1\metta_interp.pl +STS1.01) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.08) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.14) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.15) +Now PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.15) +Now PASSING TEST-SCRIPTS.E2-STATES.08) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.02) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.07) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.09) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.11) +PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.14) +PASSING TEST-SCRIPTS.E2-STATES.07) +----------------------------------------- +FAILING TEST-SCRIPTS.D5-AUTO-TYPES.01) +Now FAILING TEST-SCRIPTS.00-LANG-CASE.03) +Now FAILING TEST-SCRIPTS.B5-TYPES-PRELIM.19) +Now FAILING TEST-SCRIPTS.C1-GROUNDED-BASIC.20) + +*/ + + +option_value_def('repl',auto). +option_value_def('prolog',false). +option_value_def('compile',false). +option_value_def('table',false). +option_value_def(no_repeats,false). +option_value_def('time',true). +option_value_def('exec',true). +option_value_def('html',false). +option_value_def('python',false). +option_value_def('halt',false). +option_value_def('doing_repl',false). +option_value_def('test-retval',false). +option_value_def('trace-length',100). +option_value_def('stack-max',100). +option_value_def('trace-on-overtime',20.0). +option_value_def('trace-on-overflow',false). +option_value_def('trace-on-error',true). +option_value_def('trace-on-load',true). +option_value_def('trace-on-exec',true). +option_value_def('trace-on-eval',true). +option_value_def('trace-on-fail',false). +option_value_def('trace-on-pass',false). + + + + +set_is_unit_test(TF):- + set_option_value('trace-on-load',TF), + set_option_value('trace-on-exec',TF), + set_option_value('trace-on-eval',TF), + set_option_value('trace-on-pass',false), + set_option_value('trace-on-fail',false), + set_option_value('exec',rtrace), + set_option_value('eval',rtrace), + !. + +:- set_is_unit_test(true). +%:- set_is_unit_test. + +trace_on_fail:- option_value('trace-on-fail',true). +trace_on_overflow:- option_value('trace-on-overflow',true). +trace_on_pass:- option_value('trace-on-pass',true). +doing_repl:- option_value('doing_repl',true). +if_repl(Goal):- doing_repl->call(Goal);true. + +any_floats(S):- member(E,S),float(E),!. + +% ============================ +% %%%% Arithmetic Operations +% ============================ +%:- use_module(library(clpfd)). +:- use_module(library(clpq)). +%:- use_module(library(clpr)). + +% Addition +%'+'(Addend1, Addend2, Sum):- \+ any_floats([Addend1, Addend2, Sum]),!,Sum #= Addend1+Addend2 . +'+'(Addend1, Addend2, Sum):- notrace(catch_err(plus(Addend1, Addend2, Sum),_,fail)),!. +'+'(Addend1, Addend2, Sum):- {Sum = Addend1+Addend2}. +% Subtraction +'-'(Sum, Addend1, Addend2):- '+'(Addend1, Addend2, Sum). + +% Multiplication +'*'(Factor1, Factor2, Product):- {Product = Factor1*Factor2}. +% Division +'/'(Dividend, Divisor, Quotient):- {Dividend = Quotient * Divisor}. +% Modulus +'mod'(Dividend, Divisor, Remainder):- {Remainder = Dividend mod Divisor}. +% Exponentiation +'exp'(Base, Exponent, Result):- eval_H(['exp', Base, Exponent], Result). +% Square Root +'sqrt'(Number, Root):- eval_H(['sqrt', Number], Root). + +% ============================ +% %%%% List Operations +% ============================ +% Retrieve Head of the List +'car-atom'(List, Head):- eval_H(['car-atom', List], Head). +% Retrieve Tail of the List +'cdr-atom'(List, Tail):- eval_H(['cdr-atom', List], Tail). +% Construct a List +'Cons'(Element, List, 'Cons'(Element, List)):- !. +% Collapse List +'collapse'(List, CollapsedList):- eval_H(['collapse', List], CollapsedList). +% Count Elements in List +'CountElement'(List, Count):- eval_H(['CountElement', List], Count). +% Find Length of List +%'length'(List, Length):- eval_H(['length', List], Length). + +% ============================ +% %%%% Nondet Opteration +% ============================ +% Superpose a List +'superpose'(List, SuperposedList):- eval_H(['superpose', List], SuperposedList). + +% ============================ +% %%%% Testing +% ============================ + +% `assertEqual` Predicate +% This predicate is used for asserting that the Expected value is equal to the Actual value. +% Expected: The value that is expected. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: `assertEqual(5, 5, Result).` would succeed, setting Result to true (or some success indicator). +%'assertEqual'(Expected, Actual, Result):- use_metta_compiler,!,as_tf((Expected=Actual),Result). +'assertEqual'(Expected, Actual, Result):- ignore(Expected=Actual), eval_H(['assertEqual', Expected, Actual], Result). + +% `assertEqualToResult` Predicate +% This predicate asserts that the Expected value is equal to the Result of evaluating Actual. +% Expected: The value that is expected. +% Actual: The expression whose evaluation is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: If Actual evaluates to the Expected value, this would succeed, setting Result to true (or some success indicator). +'assertEqualToResult'(Expected, Actual, Result):- eval_H(['assertEqualToResult', Expected, Actual], Result). + +% `assertFalse` Predicate +% This predicate is used to assert that the evaluation of EvalThis is false. +% EvalThis: The expression that is being evaluated and checked for falsehood. +% Result: The result of the evaluation. +% Example: `assertFalse((1 > 2), Result).` would succeed, setting Result to true (or some success indicator), as 1 > 2 is false. +'assertFalse'(EvalThis, Result):- eval_H(['assertFalse', EvalThis], Result). + +% `assertNotEqual` Predicate +% This predicate asserts that the Expected value is not equal to the Actual value. +% Expected: The value that is expected not to match the Actual value. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the inequality. +% Example: `assertNotEqual(5, 6, Result).` would succeed, setting Result to true (or some success indicator). +'assertNotEqual'(Expected, Actual, Result):- eval_H(['assertNotEqual', Expected, Actual], Result). + +% `assertTrue` Predicate +% This predicate is used to assert that the evaluation of EvalThis is true. +% EvalThis: The expression that is being evaluated and checked for truth. +% Result: The result of the evaluation. +% Example: `assertTrue((2 > 1), Result).` would succeed, setting Result to true (or some success indicator), as 2 > 1 is true. +'assertTrue'(EvalThis, Result):- eval_H(['assertTrue', EvalThis], Result). + +% `rtrace` Predicate +% This predicate is likely used for debugging; possibly for tracing the evaluation of Condition. +% Condition: The condition/expression being traced. +% EvalResult: The result of the evaluation of Condition. +% Example: `rtrace((2 + 2), EvalResult).` would trace the evaluation of 2 + 2 and store its result in EvalResult. +'rtrace'(Condition, EvalResult):- eval_H(['rtrace', Condition], EvalResult). + +% `time` Predicate +% This predicate is used to measure the time taken to evaluate EvalThis. +% EvalThis: The expression whose evaluation time is being measured. +% EvalResult: The result of the evaluation of EvalThis. +% Example: `time((factorial(5)), EvalResult).` would measure the time taken to evaluate factorial(5) and store its result in EvalResult. +'time'(EvalThis, EvalResult):- eval_H(['time', EvalThis], EvalResult). + +% ============================ +% %%%% Debugging, Printing and Utility Operations +% ============================ +% REPL Evaluation +'repl!'(EvalResult):- eval_H(['repl!'], EvalResult). +% Condition Evaluation +'!'(Condition, EvalResult):- eval_H(['!', Condition], EvalResult). +% Import File into Environment +'import!'(Environment, Filename, Namespace):- eval_H(['import!', Environment, Filename], Namespace). +% Evaluate Expression with Pragma +'pragma!'(Environment, Expression, EvalValue):- eval_H(['pragma!', Environment, Expression], EvalValue). +% Print Message to Console +'print'(Message, EvalResult):- eval_H(['print', Message], EvalResult). +% No Operation, Returns EvalResult unchanged +'nop'(Expression, EvalResult):- eval_H(['nop', Expression], EvalResult). + +% ============================ +% %%%% Variable Bindings +% ============================ +% Bind Variables +'bind!'(Environment, Variable, Value):- eval_H(['bind!', Environment, Variable], Value). +% Let binding for single variable +'let'(Variable, Expression, Body, Result):- eval_H(['let', Variable, Expression, Body], Result). +% Sequential let binding +'let*'(Bindings, Body, Result):- eval_H(['let*', Bindings, Body], Result). + +% ============================ +% %%%% Reflection +% ============================ +% Get Type of Value +'get-type'(Value, Type):- eval_H(['get-type', Value], Type). + + +metta_cmd_args(Rest):- current_prolog_flag(late_metta_opts,Rest),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(os_argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,Rest). +run_cmd_args:- metta_cmd_args(Rest), !, do_cmdline_load_metta('&self',Rest). + + +metta_make_hook:- loonit_reset, option_value(not_a_reload,true),!. +metta_make_hook:- + metta_cmd_args(Rest), into_reload_options(Rest,Reload), cmdline_load_metta('&self',Reload). + +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(after, _Some):- nop( metta_make_hook). + +into_reload_options(Reload,Reload). + +is_cmd_option(Opt,M, TF):- atom(M), + atom_concat('-',Opt,Flag), + atom_contains(M,Flag),!, + get_flag_value(M,FV), + TF=FV. + +get_flag_value(M,V):- atomic_list_concat([_,V],'=',M),!. +get_flag_value(M,false):- atom_contains(M,'-no'),!. +get_flag_value(_,true). + + +:- ignore((( + \+ prolog_load_context(reloading,true), + forall(option_value_def(Opt,Default),set_option_value(Opt,Default))))). + +%process_option_value_def:- \+ option_value('python',false), skip(ensure_loaded(metta_python)). +process_option_value_def:- option_value('python',load), ensure_loaded(metta_vspace/pyswip/metta_python). +process_option_value_def. + + +%process_late_opts:- once(option_value('html',true)), once(shell('./total_loonits.sh')). +process_late_opts:- current_prolog_flag(os_argv,[_]),!,ignore(repl). +process_late_opts:- forall(process_option_value_def,true). +%process_late_opts:- halt(7). +process_late_opts. + +%do_cmdline_load_metta(_Slf,Rest):- select('--prolog',Rest,RRest),!, +% set_option_value('prolog',true), +% set_prolog_flag(late_metta_opts,RRest). +do_cmdline_load_metta(Self,Rest):- + set_prolog_flag(late_metta_opts,Rest), + forall(process_option_value_def,true), + cmdline_load_metta(Self,Rest),!, + forall(process_late_opts,true). + +load_metta_file(Self,Filemask):- atom_concat(_,'.metta',Filemask),!, load_metta(Self,Filemask). +load_metta_file(_Slf,Filemask):- load_flybase(Filemask). + +% done +cmdline_load_metta(_,Nil):- Nil==[],!. +cmdline_load_metta(Self,[Filemask|Rest]):- atom(Filemask), \+ atom_concat('-',_,Filemask), + must_det_ll((Src=load_metta_file(Self,Filemask),nl,write('; '),write_src(Src),nl,catch_red(Src),!,flush_output, + cmdline_load_metta(Self,Rest))). + +cmdline_load_metta(Self,['-g',M|Rest]):- + read_term_from_atom(M, Term, []), + ignore(call(Term)), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + m_opt(M,Opt),!, + is_cmd_option(Opt,M,TF),!, + format('~N'),write(' ; '), write_src(is_cmd_option(Opt,M,TF)), nl, !, set_option_value(Opt,TF), + set_tty_color_term(true), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + format('~N'),write('; unused '), write_src(M), nl, !, + cmdline_load_metta(Self,Rest). + + +set_tty_color_term(TF):- + current_output(X),set_stream(X,tty(TF)), + set_stream(current_output,tty(TF)), + set_prolog_flag(color_term ,TF). + +m_opt(M,Opt):- + m_opt0(M,Opt1), + m_opt1(Opt1,Opt). + +m_opt1(Opt1,Opt):- atomic_list_concat([Opt|_],'=',Opt1). + +m_opt0(M,Opt):- atom_concat('--no-',Opt,M),!. +m_opt0(M,Opt):- atom_concat('--',Opt,M),!. +m_opt0(M,Opt):- atom_concat('-',Opt,M),!. + +:- set_prolog_flag(occurs_check,true). + +start_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +start_html_of(_Filename):- + must_det_ll(( + S = _, + %retractall(metta_defn(Eq,S,_,_)), + nop(retractall(metta_type(S,_,_))), + %retractall(get_metta_atom(Eq,S,_,_,_)), + loonit_reset, + tee_file(TEE_FILE), + sformat(S,'cat /dev/null > "~w"',[TEE_FILE]), + + writeln(doing(S)), + ignore(shell(S)))). + +save_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +save_html_of(_):- \+ has_loonit_results, \+ option_value('html',true). +save_html_of(Filename):- + must_det_ll(( + file_name_extension(Base,_,Filename), + file_name_extension(Base,'metta.html',HtmlFilename), + loonit_reset, + tee_file(TEE_FILE), + writeln('
    Return to Summaries
    '), + sformat(S,'ansi2html -u < "~w" > "~w" ',[TEE_FILE,HtmlFilename]), + writeln(doing(S)), + ignore(shell(S)))). + +tee_file(TEE_FILE):- getenv('TEE_FILE',TEE_FILE),!. +tee_file(TEE_FILE):- metta_dir(Dir),directory_file_path(Dir,'TEE.ansi',TEE_FILE),!. +metta_dir(Dir):- getenv('METTA_DIR',Dir),!. + +load_metta(Filename):- + %clear_spaces, + load_metta('&self',Filename). + + +load_metta(_Self,Filename):- Filename=='--repl',!,repl. +load_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + with_wild_path(load_metta(Self),Filename),!,loonit_report. +load_metta(Self,RelFilename):- + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + track_load_into_file(Filename, + include_metta(Self,RelFilename)). + +include_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + must_det_ll(with_wild_path(include_metta(Self),Filename)),!. + +include_metta(Self,RelFilename):- + must_det_ll(( + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), + ((directory_file_path(Directory, _, Filename), + assert(metta_file(Self,Filename,Directory)), + with_cwd(Directory, + must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). + +load_metta_file_stream(Filename,Self,In):- + with_option(loading_file,Filename, + %current_exec_file(Filename), + ((must_det_ll(( + set_exec_num(Filename,1), + load_answer_file(Filename), + set_exec_num(Filename,0))), + once((repeat, (( + ((nb_current(read_mode,Mode),Mode\==[])->true;Mode=load), + once(read_metta(In,Expr)), %write_src(read_metta=Expr),nl, + must_det_ll((do_metta(file(Filename),Mode,Self,Expr,_O)->true; + pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), + flush_output)), + at_end_of_stream(In)))))),!. + + +clear_spaces:- clear_space(_). +clear_space(S):- + %retractall(metta_defn(_,S,_,_)), + nop(retractall(metta_type(S,_,_))), + retractall(asserted_metta_atom(S,_)). + + +lsm:- lsm(_). +lsm(S):- + listing(metta_file(S,_,_)), + %listing(mdyn_type(S,_,_,_)), + forall(mdyn_type(S,_,_,Src),color_g_mesg('#22a5ff',write_f_src(Src))), + nl,nl,nl, + forall(mdyn_defn(S,_,_,Src),color_g_mesg('#00ffa5',write_f_src(Src))), + %listing(mdyn_defn(S,_,_,_)), + !. + +write_f_src(H,B):- H=@=B,!,write_f_src(H). +write_f_src(H,B):- write_f_src(['=',H,B]). + +hb_f(HB,ST):- sub_term(ST,HB),(atom(ST),ST\==(=),ST\==(:)),!. +write_f_src(HB):- + hb_f(HB,ST), + option_else(current_def,CST,[]),!, + (CST == ST -> true ; (nl,nl,nl,set_option_value(current_def,ST))), + write_src(HB). + + + +debug_only(G):- notrace(ignore(catch_warn(G))). +debug_only(_What,G):- ignore((fail,notrace(catch_warn(G)))). + + +'True':- true. +'False':- fail. + + +'metta_learner::vspace-main':- repl. + +into_underscores(D,U):- atom(D),!,atomic_list_concat(L,'-',D),atomic_list_concat(L,'_',U). +into_underscores(D,U):- descend_and_transform(into_underscores,D,U),!. + +into_hyphens(D,U):- atom(D),!,atomic_list_concat(L,'_',D),atomic_list_concat(L,'-',U). +into_hyphens(D,U):- descend_and_transform(into_hyphens,D,U),!. + +descend_and_transform(P2, Input, Transformed) :- + ( var(Input) + -> Transformed = Input % Keep variables as they are + ; compound(Input) + -> (compound_name_arguments(Input, Functor, Args), + maplist(descend_and_transform(P2), Args, TransformedArgs), + compound_name_arguments(Transformed, Functor, TransformedArgs)) + ; (atom(Input),call(P2,Input,Transformed)) + -> true % Transform atoms using xform_atom/2 + ; Transformed = Input % Keep other non-compound terms as they are + ). + +/* +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. + +fn_append(List,X,Call):- + fn_append1(List,X,ListX), + into_fp(ListX,Call). + + + + + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + +is_metta_data_functor(Eq,Other,H):- + metta_type(Other,H,_), + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_). +*/ +is_function(F):- atom(F). + +is_False(X):- X\=='True', (is_False1(X)-> true ; (eval_H(X,Y),is_False1(Y))). +is_False1(Y):- (Y==0;Y==[];Y=='False'). + +is_conz(Self):- compound(Self), Self=[_|_]. + +%dont_x(eval_H(Depth,Self,metta_if(A=1,atom_concat(metta_,_,F). +needs_expanded(eval_H(Term,_),Expand):- !,sub_term(Expand,Term),compound(Expand),Expand\=@=Term, + compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). +needs_expanded([A|B],Expand):- sub_term(Expand,[A|B]), compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). + +fn_append1(eval_H(Term,X),X,eval_H(Term,X)):-!. +fn_append1(Term,X,eval_H(Term,X)). + + +% Check if parentheses are balanced in a list of characters +balanced_parentheses(Chars) :- balanced_parentheses(Chars, 0). +balanced_parentheses([], 0). +balanced_parentheses(['('|T], N) :- N1 is N + 1, balanced_parentheses(T, N1). +balanced_parentheses([')'|T], N) :- N > 0, N1 is N - 1, balanced_parentheses(T, N1). +balanced_parentheses([H|T], N) :- H \= '(', H \= ')', balanced_parentheses(T, N). +% Recursive function to read lines until parentheses are balanced. +repl_read(NewAccumulated, Expr):- + atom_concat(Atom, '.', NewAccumulated), + catch_err((read_term_from_atom(Atom, Term, []), Expr=call(Term)), E, + (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. + + +repl_read("!", '!'):-!. +repl_read("+", '+'):-!. +repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. + +repl_read(Str, Expr):- atom_concat('@',_,Str),!,atom_string(Expr,Str). +repl_read(NewAccumulated, Expr):- + normalize_space(string(Renew),NewAccumulated), Renew \== NewAccumulated, !, + repl_read(Renew, Expr). +%repl_read(NewAccumulated,exec(Expr)):- string_concat("!",Renew,NewAccumulated), !, repl_read(Renew, Expr). +repl_read(NewAccumulated, Expr):- string_chars(NewAccumulated, Chars), + balanced_parentheses(Chars), length(Chars, Len), Len > 0, + parse_sexpr_metta(NewAccumulated, Expr), !, + normalize_space(string(Renew),NewAccumulated), + add_history_string(Renew). +repl_read(Accumulated, Expr) :- read_line_to_string(current_input, Line), repl_read(Accumulated, Line, Expr). +repl_read(Accumulated, "", Expr):- !, repl_read(Accumulated, Expr). +repl_read(_Accumulated, Line, Expr):- Line == end_of_file, !, Expr = Line. +repl_read(Accumulated, Line, Expr) :- atomics_to_string([Accumulated," ",Line], NewAccumulated), !, + repl_read(NewAccumulated, Expr). + +repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +repl_read(Expr) :- repeat, + remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), + repl_read(Str, Expr1), + once(((atom(Expr1),atom_concat('@',_,Expr1), + \+ atom_contains(Expr1,"="), + repl_read(Expr2)) + -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), + % this cutrs the repeat/0 + ((peek_pending_codes(_,Peek),Peek==[])->!;true). + +add_history_string(Str):- notrace(ignore(add_history01(Str))),!. + +add_history_src(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). + + +add_history_pl(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). + +read_metta1(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta1(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta1(In,Expr):- string(In),!,parse_sexpr_metta(In,Expr),!. +read_metta1(In,Expr):- peek_char(In,Char), read_metta1(In,Char,Expr). + +read_metta1(In,Char,Expr):- char_type(Char,white),get_char(In,Char),put(Char),!,read_metta1(In,Expr). +read_metta1(In,'!',Expr):- get_char(In,_), !, read_metta(In,Read1),!,Expr=exec(Read1). +read_metta1(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),write_comment(Str),!,read_metta(In,Expr))),!. +read_metta1(In,_,Expr):- maybe_read_pl(In,Expr),!. +read_metta1(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). + + +maybe_read_pl(In,Expr):- + peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), + notrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, + read_term(In, Term, [])))). +peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. +peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. + + + + +%read_line_to_sexpr(Stream,UnTyped), +read_sform(Str,F):- trace, string(Str),open_string(Str,S),!,read_sform(S,F). +read_sform(S,F):- + read_sform1(S,F1), + ( F1\=='!' -> F=F1 ; + (read_sform1(S,F2), F = exec(F2))). + +read_sform1(Str,F):- string(Str),open_string(Str,S),!,read_sform1(S,F). +read_sform1(S,F):- at_end_of_stream(S),!,F=end_of_file. +read_sform1(S,M):- peek_char(S,C),read_sform3(C,S,F), untyped_to_metta(F,M). +%read_sform1(S,F):- profile(parse_sexpr_metta(S,F)). + +read_sform3(C,S,F):- char_type(C,white),get_char(S,_),!,read_sform1(S,F). +read_sform3(';',S,'$COMMENT'(F,0,0)):- !, read_line_to_string(S,F). +read_sform3(';',S,F):- read_line_to_string(S,_),!,read_sform1(S,F). +read_sform3('!',S,exec(F)):- !,get_char(S,_),read_sform1(S,F). +read_sform3(_,S,F):- read_line_to_string(S,L),!,read_sform_cont(L,S,F). + +read_sform_cont(L,S,F):- L=="", !, read_sform1(S,F). +read_sform_cont(L,_S,F):- input_to_forms(L,F),!. +read_sform_cont(L,S,F):- read_line_to_string(S,L2), + atomic_to_string([L,' ',L2],L3),read_sform_cont(L3,S,F),!. + +in2_stream(N1,S1):- integer(N1),!,stream_property(S1,file_no(N1)),!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,alias(N1)),!. +in2_stream(N1,S1):- is_stream(N1),S1=N1,!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. +is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. + +%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). +read_metta(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta(In,Expr):- + read_metta1(In,Read1), + (Read1=='!' + -> (read_metta1(In,Read2), Expr=exec(Read2), nop(add_history_src(Expr))) + ; Expr = Read1),!. + +parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. +parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + +parse_sexpr_metta1(M,exec(O)):- string_concat('!',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(M,(O)):- string_concat('+',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + + +write_comment(_):- silent_loading,!. +write_comment(Cmt):- connlf,format(';;~w~n',[Cmt]). +do_metta_cmt(_,'$COMMENT'(Cmt,_,_)):- write_comment(Cmt),!. +do_metta_cmt(_,'$STRING'(Cmt)):- write_comment(Cmt),!. +do_metta_cmt(Self,[Cmt]):- !, do_metta_cmt(Self, Cmt),!. + + +mlog_sym('@'). + +%untyped_to_metta(I,exec(O)):- compound(I),I=exec(M),!,untyped_to_metta(M,O). +untyped_to_metta(I,O):- + must_det_ll(( + trly(mfix_vars1,I,M), + trly(cons_to_c,M,OM), + trly(cons_to_l,OM,O))). + + +trly(P2,A,B):- once(call(P2,A,M)),A\=@=M,!,trly(P2,M,B). +trly(_,A,A). + +mfix_vars1(I,O):- var(I),!,I=O. +mfix_vars1('$t','$VAR'('T')):-!. +mfix_vars1('$T','$VAR'('T')):-!. +%mfix_vars1(I,O):- I=='T',!,O='True'. +%mfix_vars1(I,O):- I=='F',!,O='False'. +%mfix_vars1(I,O):- is_i_nil(I),!,O=[]. +mfix_vars1(I,O):- I=='true',!,O='True'. +mfix_vars1(I,O):- I=='false',!,O='False'. +mfix_vars1('$STRING'(I),O):- option_value(strings,true),!, mfix_vars1(I,O). +mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),atom_chars(O,M),!. +%mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),name(O,M),!. +mfix_vars1([H|T],O):- H=='[', is_list(T), last(T,L),L==']',append(List,[L],T), !, O = ['[...]',List]. +mfix_vars1([H|T],O):- H=='{', is_list(T), last(T,L),L=='}',append(List,[L],T), !, O = ['{...}',List]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),O):- is_list(List),!, O = ['[...]',List]. +mfix_vars1(I,O):- I = ['[', X, ']'], nonvar(X), !, O = ['[...]',X]. +mfix_vars1(I,O):- I = ['{', X, '}'], nonvar(X), !, O = ['{...}',X]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),Res):- is_list(List),!, append(['['|List],[']'],Res),!. +mfix_vars1(I,O):- I==[Quote, S], Quote==quote,S==s,!, O=is. +mfix_vars1([K,H|T],Cmpd):- atom(K),mlog_sym(K),is_list(T),mfix_vars1([H|T],[HH|TT]),atom(HH),is_list(TT),!, + compound_name_arguments(Cmpd,HH,TT). +%mfix_vars1([H|T],[HH|TT]):- !, mfix_vars1(H,HH),mfix_vars1(T,TT). +mfix_vars1(List,ListO):- is_list(List),!,maplist(mfix_vars1,List,ListO). +mfix_vars1(I,O):- string(I),option_value('string-are-atoms',true),!,atom_string(O,I). + +mfix_vars1(I,O):- compound(I),!,compound_name_arguments(I,F,II),F\=='$VAR',maplist(mfix_vars1,II,OO),!,compound_name_arguments(O,F,OO). +mfix_vars1(I,O):- \+ atom(I),!,I=O. +mfix_vars1(I,'$VAR'(O)):- atom_concat('$',N,I),dvar_name(N,O),!. +mfix_vars1(I,I). + +no_cons_reduce. + +dvar_name(t,'T'):- !. +dvar_name(N,O):- atom(N),atom_number(N,Num),atom_concat('Num',Num,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- number(N),atom_concat('Num',N,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- \+ atom(N),!,format(atom(A),'~w',[N]),dvar_name(A,O). +dvar_name('','__'):-!. % "$" +dvar_name('_','_'):-!. % "$_" +dvar_name(N,O):- svar_fixvarname(N,O),!. +dvar_name(N,O):- must_det_ll((atom_chars(N,Lst),maplist(c2vn,Lst,NList),atomic_list_concat(NList,S),svar_fixvarname(S,O))),!. +c2vn(A,A):- char_type(A,prolog_identifier_continue),!. +c2vn(A,A):- char_type(A,prolog_var_start),!. +c2vn(A,AA):- char_code(A,C),atomic_list_concat(['_C',C,'_'],AA). + +cons_to_l(I,I):- no_cons_reduce,!. +cons_to_l(I,O):- var(I),!,O=I. +cons_to_l(I,O):- is_i_nil(I),!,O=[]. +cons_to_l(I,O):- I=='nil',!,O=[]. +cons_to_l(C,O):- \+ compound(C),!,O=C. +cons_to_l([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_l(H,HH),!,cons_to_l(T,TT). +cons_to_l(List,ListO):- is_list(List),!,maplist(cons_to_l,List,ListO). +cons_to_l(I,I). + +cons_to_c(I,I):- no_cons_reduce,!. +cons_to_c(I,O):- var(I),!,O=I. +cons_to_c(I,O):- is_i_nil(I),!,O=[]. +cons_to_c(I,O):- I=='nil',!,O=[]. +cons_to_c(C,O):- \+ compound(C),!,O=C. +cons_to_c([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_c(H,HH),!,cons_to_c(T,TT). +cons_to_c(I,O):- \+ is_list(I), compound_name_arguments(I,F,II),maplist(cons_to_c,II,OO),!,compound_name_arguments(O,F,OO). +cons_to_c(I,I). + + + +t_is_ttable(T):- var(T),!. +t_is_ttable(T):- is_i_nil(T),!. +t_is_ttable(T):- is_ftVar(T),!. +t_is_ttable([F|Args]):- F=='Cons',!,is_list(Args). +t_is_ttable([_|Args]):- !, \+ is_list(Args). +t_is_ttable(_). + +is_cons_f(Cons):- is_cf_nil(Cons,_). +is_cf_nil('Cons','NNNil'). +%is_cf_nil('::','nil'). + +is_i_nil(I):- + is_cf_nil('Cons',Nil), I == Nil. + +subst_vars(TermWDV, NewTerm):- + subst_vars(TermWDV, NewTerm, NamedVarsList), + maybe_set_var_names(NamedVarsList). + +subst_vars(TermWDV, NewTerm, NamedVarsList) :- + subst_vars(TermWDV, NewTerm, [], NamedVarsList). + +subst_vars(Term, Term, NamedVarsList, NamedVarsList) :- var(Term), !. +subst_vars([], [], NamedVarsList, NamedVarsList):- !. +subst_vars([TermWDV|RestWDV], [Term|Rest], Acc, NamedVarsList) :- !, + subst_vars(TermWDV, Term, Acc, IntermediateNamedVarsList), + subst_vars(RestWDV, Rest, IntermediateNamedVarsList, NamedVarsList). +subst_vars('$VAR'('_'), _, NamedVarsList, NamedVarsList) :- !. +subst_vars('$VAR'(VName), Var, Acc, NamedVarsList) :- nonvar(VName), svar_fixvarname(VName,Name), !, + (memberchk(Name=Var, Acc) -> NamedVarsList = Acc ; ( !, Var = _, NamedVarsList = [Name=Var|Acc])). +subst_vars(Term, Var, Acc, NamedVarsList) :- atom(Term),atom_concat('$',DName,Term), + dvar_name(DName,Name),!,subst_vars('$VAR'(Name), Var, Acc, NamedVarsList). + +subst_vars(TermWDV, NewTerm, Acc, NamedVarsList) :- + compound(TermWDV), !, + compound_name_arguments(TermWDV, Functor, ArgsWDV), + subst_vars(ArgsWDV, Args, Acc, NamedVarsList), + compound_name_arguments(NewTerm, Functor, Args). +subst_vars(Term, Term, NamedVarsList, NamedVarsList). + + + +:- nb_setval(variable_names,[]). + + +assert_preds(_Self,_Load,_Preds):- \+ preview_compiler,!. +assert_preds(_Self,Load,Preds):- + expand_to_hb(Preds,H,_B),functor(H,F,A), + color_g_mesg('#005288',( + ignore(( + \+ predicate_property(H,defined), + if_t(use_metta_compiler,catch_i(dynamic(F,A))), + format(' :- ~q.~n',[dynamic(F/A)]), + if_t(option_value('tabling',true), format(' :- ~q.~n',[table(F/A)])))), + if_t((preview_compiler), + format('~N~n ~@',[portray_clause(Preds)])), + if_t(use_metta_compiler,if_t(\+ predicate_property(H,static),add_assertion(Preds))))), + nop(metta_anew1(Load,Preds)). + + +%load_hook(_Load,_Hooked):- !. +load_hook(Load,Hooked):- ignore(( \+ ((forall(load_hook0(Load,Hooked),true))))),!. + +load_hook0(_,_):- \+ current_prolog_flag(metta_interp,ready),!. +load_hook0(_,_):- \+ preview_compiler,!. +load_hook0(Load,metta_defn(=,Self,H,B)):- + functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +/* +load_hook0(Load,get_metta_atom(Eq,Self,H)):- B = 'True', + H\=[':'|_], functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +*/ + +use_metta_compiler:- notrace(option_value('compile','full')), !. +preview_compiler:- \+ option_value('compile',false), !. +%preview_compiler:- use_metta_compiler,!. + + + +op_decl(match, [ 'Space', 'Atom', 'Atom'], '%Undefined%'). +op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('get-atoms', [ 'Space' ], 'Atom'). + +op_decl('car-atom', [ 'Expression' ], 'Atom'). +op_decl('cdr-atom', [ 'Expression' ], 'Expression'). + +op_decl(let, [ 'Atom', '%Undefined%', 'Atom' ], 'Atom'). +op_decl('let*', [ 'Expression', 'Atom' ], 'Atom'). + +op_decl(and, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(or, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(case, [ 'Expression', 'Atom' ], 'Atom'). +/* +op_decl(apply, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl(chain, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl('filter-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl('foldl-atom', [ 'Expression', 'Atom', 'Variable', 'Variable', 'Atom' ], 'Atom'). +op_decl('map-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl(quote, [ 'Atom' ], 'Atom'). +op_decl('if-decons', [ 'Atom', 'Variable', 'Variable', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-empty', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-error', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-non-empty-expression', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-not-reducible', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl(return, [ 'Atom' ], 'ReturnType'). +op_decl('return-on-error', [ 'Atom', 'Atom'], 'Atom'). +op_decl(unquote, [ '%Undefined%'], '%Undefined%'). +op_decl(cons, [ 'Atom', 'Atom' ], 'Atom'). +op_decl(decons, [ 'Atom' ], 'Atom'). +op_decl(empty, [], '%Undefined%'). +op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). +op_decl(eval, [ 'Atom' ], 'Atom'). +op_decl(function, [ 'Atom' ], 'Atom'). +op_decl(id, [ 'Atom' ], 'Atom'). +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). +*/ +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). +op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). +op_decl('%', [ 'Number', 'Number' ], 'Number'). +op_decl('*', [ 'Number', 'Number' ], 'Number'). +op_decl('-', [ 'Number', 'Number' ], 'Number'). +op_decl('+', [ 'Number', 'Number' ], 'Number'). +op_decl(combine, [ X, X], X). + +op_decl('bind!', ['Symbol','%Undefined%'], 'EmptyType'). +op_decl('import!', ['Space','Atom'], 'EmptyType'). +op_decl('get-type', ['Atom'], 'Atom'). + +type_decl('Any'). +type_decl('Atom'). +type_decl('Bool'). +type_decl('ErrorType'). +type_decl('Expression'). +type_decl('Number'). +type_decl('ReturnType'). +type_decl('Space'). +type_decl('Symbol'). +type_decl('MemoizedState'). +type_decl('Type'). +type_decl('%Undefined%'). +type_decl('Variable'). + +:- dynamic(get_metta_atom/2). +:- dynamic(asserted_metta_atom/2). +metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). +metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). + +%get_metta_atom(Eq,KB, [F|List]):- KB='&flybase',fb_pred(F, Len), length(List,Len),apply(F,List). + + +get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). + +get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred(F, Len), length([A|List],Len),apply(F,[A|List]). +get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). +get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). +get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). +get_metta_atom_from(KB,Atom):- if_or_else(asserted_metta_atom( KB,Atom),asserted_metta_atom_fallback( KB,Atom)). + +asserted_metta_atom_fallback( KB,Atom):- fail, is_list(KB),!, member(Atom,KB). +%asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) + +%metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. +metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). +metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). +%typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). + + +%maybe_xform(metta_atom(KB,[F,A|List]),metta_atom(KB,F,A,List)):- is_list(List),!. +maybe_xform(metta_defn(Eq,KB,Head,Body),metta_atom(KB,[Eq,Head,Body])). +maybe_xform(metta_type(KB,Head,Body),metta_atom(KB,[':',Head,Body])). +maybe_xform(metta_atom(KB,HeadBody),asserted_metta_atom(KB,HeadBody)). +maybe_xform(_OBO,_XForm):- !, fail. + +metta_anew1(Load,_OBO):- var(Load),trace,!. +metta_anew1(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew1(Load,XForm). + +metta_anew1(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew1(Mode,OBO). +metta_anew1(load,OBO):- OBO= metta_atom(Space,Atom),!,'add-atom'(Space, Atom). +metta_anew1(unload,OBO):- OBO= metta_atom(Space,Atom),!,'remove-atom'(Space, Atom). + +metta_anew1(load,OBO):- !, must_det_ll((load_hook(load,OBO), + subst_vars(OBO,Cl),show_failure(assertz_if_new(Cl)))). %to_metta(Cl). +metta_anew1(unload,OBO):- subst_vars(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + +metta_anew2(Load,_OBO):- var(Load),trace,!. +metta_anew2(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew2(Load,XForm). +metta_anew2(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew2(Mode,OBO). +metta_anew2(load,OBO):- must_det_ll((load_hook(load,OBO),subst_vars_not_last(OBO,Cl),assertz_if_new(Cl))). %to_metta(Cl). +metta_anew2(unload,OBO):- subst_vars_not_last(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + + +metta_anew(Ch,Src,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew(Mode,Src,OBO). +metta_anew(Load,_Src,OBO):- silent_loading,!,metta_anew1(Load,OBO). +metta_anew(Load,Src,OBO):- maybe_xform(OBO,XForm),!,metta_anew(Load,Src,XForm). +metta_anew(Load,Src,OBO):- format('~N'), color_g_mesg('#0f0f0f',(write(' ; Action: '),writeq(Load=OBO))), + color_g_mesg('#ffa500', write_src(Src)), + metta_anew1(Load,OBO),format('~n'). + +subst_vars_not_last(A,B):- + functor(A,_F,N),arg(N,A,E), + subst_vars(A,B), + nb_setarg(N,B,E),!. + +con_write(W):-check_silent_loading, write(W). +con_writeq(W):-check_silent_loading, writeq(W). +writeqln(Q):- check_silent_loading,write(' '),con_writeq(Q),connl. + +connlf:- check_silent_loading, format('~N'). +connl:- check_silent_loading,nl. +% check_silent_loading:- silent_loading,!,trace,break. +check_silent_loading. +silent_loading:- is_converting,!. +silent_loading:- \+ option_value('trace-on-load',true), !. + + + +uncompound(OBO,Src):- \+ compound(OBO),!, Src = OBO. +uncompound('$VAR'(OBO),'$VAR'(OBO)):-!. +uncompound(IsList,Src):- is_list(IsList),!,maplist(uncompound,IsList,Src). +uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). +uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). + +:- dynamic(all_data_to/1). +all_data_once:- all_data_to(_),!. +all_data_once:- open(all_data,write,Out,[alias(all_data),encoding(utf8),lock(write)]), + assert(all_data_to(Out)), + writeln(Out,':- encoding(utf8).'), + writeln(Out,':- style_check(-discontiguous).'), + all_data_preds. + +all_data_preds:- + all_data_to(Out), + with_output_to(Out, +((listing(table_n_type/3), + listing(load_state/2), + listing(is_loaded_from_file_count/2), + listing(fb_pred/2), + listing(fb_arg_type/1), + listing(fb_arg_table_n/3), + listing(fb_arg/1), + listing(done_reading/1)))),!. + +all_data_done:- + all_data_preds, + retract(all_data_to(Out)), + close(Out). + + + +%real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). +real_assert(OBO):- call(OBO),!. +real_assert(OBO):- assert(OBO), + (is_converting->print_src(OBO);true). + +print_src(OBO):- format('~N'), uncompound(OBO,Src),!, write_src(Src). + +assert_to_metta(_):- reached_file_max,!. +assert_to_metta(OBO):- !, functor(OBO,Fn,A),decl_fb_pred(Fn,A), !,real_assert(OBO),!, + incr_file_count(_),heartbeat. + +assert_to_metta(OBO):- + ignore(( A>=2,A<700, + OBO=..[Fn|Cols], + must_det_ll(( + make_assertion4(Fn,Cols,Data,OldData), + functor(Data,FF,AA), + decl_fb_pred(FF,AA), + ((fail,call(Data))->true;( + must_det_ll(( + real_assert(Data), + incr_file_count(_), + ignore((((should_show_data(X), + ignore((fail,OldData\==Data,write('; oldData '),write_src(OldData),format(' ; ~w ~n',[X]))), + write_src(Data),format(' ; ~w ~n',[X]))))), + ignore(( + fail, option_value(output_stream,OutputStream), + is_stream(OutputStream), + should_show_data(X1),X1<1000,must_det_ll((display(OutputStream,Data),writeln(OutputStream,'.'))))))))))))),!. + +assert_MeTTa(OBO):- !, assert_to_metta(OBO). +%assert_MeTTa(OBO):- !, assert_to_metta(OBO),!,heartbeat. +/* +assert_MeTTa(Data):- !, heartbeat, functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + incr_file_count(_), + ignore((((should_show_data(X), + write(newData(X)),write(=),write_src(Data))))), + assert(Data),!. +*/ + + +%:- dynamic((metta_type/3,metta_defn/3,get_metta_atom/2)). + +into_space(Self,'&self',Self):-!. +into_space(_,Other,Other):-!. + + +into_space(Self,Myself,SelfO):- into_space(30,Self,Myself,SelfO). + +into_space(_Dpth,Self,Myself,Self):-Myself=='&self',!. +into_space(_Dpth,Self,None,Self):- 'None' == None,!. +into_space(Depth,Self,Other,Result):- eval_H(Depth,Self,Other,Result). +into_name(_,Other,Other). + +%eval_f_args(Depth,Self,F,ARGS,[F|EARGS]):- maplist(eval_H(Depth,Self),ARGS,EARGS). + + +combine_result(TF,R2,R2):- TF == [], !. +combine_result(TF,_,TF):-!. + + +do_metta1_e(_Self,_,exec(Exec)):- !,write_exec(Exec),!. +do_metta1_e(_Self,_,[=,A,B]):- !, with_concepts(false, + (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. +do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. + +write_exec(Exec):- notrace(write_exec0(Exec)). +%write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). +write_exec0(Exec):- + wots(S,write_src(exec(Exec))), + nb_setval(exec_src,Exec), + ignore((notrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). + + + + +asserted_do_metta(Space,Load,Src):- asserted_do_metta2(Space,Load,Src,Src). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,Type], Src):- TypeOp = ':', \+ is_list(Type),!, + must_det_ll(( + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,Type]))))),!. + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len),LenM1 is Len - 1, last_element(TypeDecL,LE), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecL]))), + metta_anew1(Load,metta_arity(Self,Fn,LenM1)), + arg_types(TypeDecL,[],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)),!, + metta_anew1(Load,metta_last(Self,Fn,LE)))). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL,RetType], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len), + append(TypeDecL,[RetType],TypeDecLRet), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecLRet]))), + metta_anew1(Load,metta_arity(Self,Fn,Len)), + arg_types(TypeDecL,[RetType],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)), + metta_anew1(Load,metta_return(Self,Fn,RetType)))),!. + +/*do_metta(File,Self,Load,PredDecl, Src):-fail, + metta_anew(Load,Src,metta_atom(Self,PredDecl)), + ignore((PredDecl=['=',Head,Body], metta_anew(Load,Src,metta_defn(Eq,Self,Head,Body)))), + ignore((Body == 'True',!,do_metta(File,Self,Load,Head))), + nop((fn_append(Head,X,Head), fn_append(PredDecl,X,Body), + metta_anew((Head:- Body)))),!.*/ + +asserted_do_metta2(Self,Load,[EQ,Head,Result], Src):- EQ=='=', !, + must_det_ll(( + discover_head(Self,Load,Head), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_defn(EQ,Self,Head,Result))), + discover_body(Self,Load,Result))). + +asserted_do_metta2(Self,Load,PredDecl, Src):- + ignore(discover_head(Self,Load,PredDecl)), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,PredDecl))). + + +always_exec(exec(W)):- !, is_list(W), always_exec(W). +always_exec(Comp):- compound(Comp),compound_name_arity(Comp,Name,N),atom_concat('eval',_,Name),Nm1 is N-1, arg(Nm1,Comp,TA),!,always_exec(TA). +always_exec(List):- \+ is_list(List),!,fail. +always_exec([Var|_]):- \+ atom(Var),!,fail. +always_exec(['extend-py!'|_]):- !, fail. +always_exec([H|_]):- atom_concat(_,'!',H),!. %pragma!/print!/transfer!/include! etc +always_exec(['assertEqualToResult'|_]):-!,fail. +always_exec(['assertEqual'|_]):-!,fail. +always_exec(_):-!,fail. % everything else + +if_t(A,B,C):- trace,if_t((A,B),C). + + +check_answers_for(TermV,Ans):- (string(TermV);var(Ans);var(TermV)),!,fail. +check_answers_for(TermV,_):- sformat(S,'~q',[TermV]),atom_contains(S,"[assert"),!,fail. +check_answers_for(_,Ans):- contains_var('BadType',Ans),!,fail. +check_answers_for(TermV,_):- inside_assert(TermV,BaseEval), always_exec(BaseEval),!,fail. + +%check_answers_for([TermV],Ans):- !, check_answers_for(TermV,Ans). +%check_answers_for(TermV,[Ans]):- !, check_answers_for(TermV,Ans). +check_answers_for(_,_). + +got_exec_result2(Val,Nth,Ans):- is_list(Ans), exclude(==(','),Ans,Ans2), Ans\==Ans2,!, + got_exec_result2(Val,Nth,Ans2). +got_exec_result2(Val,Nth,Ans):- + must_det_ll(( + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + if_t( ( \+ is_unit_test_exec(Exec)), + ((equal_enough(Val,Ans) + -> write_pass_fail_result_now(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result_now(TestName,exec,Exec,'FAIL',Ans,Val)))))). + +write_pass_fail_result_now(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + (PASS_FAIL=='PASS'->flag(loonit_success, X, X+1);flag(loonit_failure, X, X+1)), + (PASS_FAIL=='PASS'->Color=cyan;Color=red), + color_g_mesg(Color,write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val)),!,nl, + nl,writeln('--------------------------------------------------------------------------'),!. + +write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,write_mobj(exec,[(['assertEqualToResult',Exec,Ans])]), + nl,write_src('!'(['assertEqual',Val,Ans])), + write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val). + +is_unit_test_exec(Exec):- sformat(S,'~w',[Exec]),sub_atom(S,_,_,_,'assert'). +is_unit_test_exec(Exec):- sformat(S,'~q',[Exec]),sub_atom(S,_,_,_,"!',"). + +return_empty('Empty'). +return_empty(_,Empty):- return_empty(Empty). + +convert_tax(_How,Self,Tax,Expr,NewHow):- + metta_interp_mode(Ch,Mode), + string_concat(Ch,TaxM,Tax),!, + normalize_space(string(NewTax),TaxM), + convert_tax(Mode,Self,NewTax,Expr,NewHow). +convert_tax(How,_Self,Tax,Expr,How):- + %parse_sexpr_metta(Tax,Expr). + normalize_space(string(NewTax),Tax), + read_metta(NewTax,Expr). + + +metta_interp_mode('+',load). +metta_interp_mode('-',unload). +metta_interp_mode('!',exec). +metta_interp_mode('?',call). +metta_interp_mode('^',load_like_file). + + +call_sexpr(Mode,Self,Tax,_S,Out):- + metta_interp_mode(Mode,How), + (atom(Tax);string(Tax)), + normalize_space(string(TaxM),Tax), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + show_call(do_metta(python,NewHow,Self,Expr,Out)). + + +do_metta(_File,_Load,_Self,In,Out):- var(In),!,In=Out. +do_metta(_From,_Mode,_Self,end_of_file,'Empty'):- !. %, halt(7), writeln('\n\n% To restart, use: ?- repl.'). +do_metta(_File,_Load,_Self,Cmt,Out):- Cmt==[],!, Out=[]. + +do_metta(From,Load,Self,'$COMMENT'(Expr,_,_),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,Load,Self,'$STRING'(Expr),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,[Expr],Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,Cmt,Out):- write_comment(Cmt), !, + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog only: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))), + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))),!. + +do_metta(From,How,Self,Src,Out):- string(Src),!, + normalize_space(string(TaxM),Src), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + do_metta(From,NewHow,Self,Expr,Out). + +do_metta(From,_,Self,exec(Expr),Out):- !, do_metta(From,exec,Self,Expr,Out). +do_metta(From,_,Self, call(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,_,Self, ':-'(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,call,Self,TermV,FOut):- !, + call_for_term_variables(TermV,Term,NamedVarsList,X), must_be(nonvar,Term), + copy_term(NamedVarsList,Was), + Output = NamedVarsList, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). +do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). + +do_metta(file(Filename),exec,Self,TermV,Out):- + notrace(( + inc_exec_num(Filename), + must_det_ll(( + get_exec_num(Filename,Nth), + Nth>0)), + file_answers(Filename, Nth, Ans), + check_answers_for(TermV,Ans),!, + must_det_ll(( + color_g_mesg_ok('#ffa500', + (writeln(';; In file as: '), + color_g_mesg([bold,fg('#FFEE58')], write_src(exec(TermV))), + write(';; To unit test case:'))))),!, + do_metta_exec(file(Filename),Self,['assertEqualToResult',TermV,Ans],Out))). + +do_metta(From,exec,Self,TermV,Out):- !, do_metta_exec(From,Self,TermV,Out). + +do_metta_exec(From,Self,TermV,FOut):- + Output = X, + notrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)), + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). + + +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + term_variables(TermV, AllVars), call_for_term_variables4v(TermV,AllVars,Term,NamedVarsList,X),!, + must_be(callable,Term). +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + get_term_variables(TermV, DCAllVars, Singletons, NonSingletons), + call_for_term_variables5(TermV, DCAllVars, Singletons, NonSingletons, Term,NamedVarsList,X),!, + must_be(callable,Term). + +into_metta_callable(_Self,TermV,Term,X,NamedVarsList,Was):- use_metta_compiler, !, + must_det_ll(((( + + % ignore(Res = '$VAR'('ExecRes')), + RealRes = Res, + compile_for_exec(Res,TermV,ExecGoal),!, + subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), + copy_term(NamedVarsList,Was), + term_variables(Term,Vars), + notrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), + %nl,writeq(Term),nl, + ((\+ \+ + ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), + %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(Term,NamedVarsList,Vars)), + nl)))), + nop(maplist(verbose_unify,Vars)), + %NamedVarsList=[_=RealRealRes|_], + var(RealRes), X = RealRes)))),!. + + +into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, + option_else('stack-max',StackMax,100), + CALL = eval_H(StackMax,Self,Term,X), + notrace(( must_det_ll(( + if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), + subst_vars(TermV,Term,NamedVarsList), + copy_term(NamedVarsList,Was) + %term_variables(Term,Vars), + %nl,writeq(Term),nl, + %skip((\+ \+ + %((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(TermV,Term,NamedVarsList,Vars)),nl)))), + %nop(maplist(verbose_unify,Vars)))))),!. + )))). + +eval_H(StackMax,Self,Term,X):- + (always_exec(Term) -> + if_or_else(eval_args('=',_,StackMax,Self,Term,X), + (fail,subst_args('=',_,StackMax,Self,Term,X))); + call_max_time(eval_args('=',_,StackMax,Self,Term,X),3.0, + (fail,subst_args('=',_,StackMax,Self,Term,X)))). + +eval_H(Term,X):- + if_or_else((eval_args(Term,X),X\==Term),(fail,subst_args(Term,Y),Y\==Term)). + +%eval_H(Term,X):- if_or_else((subst_args(Term,X),X\==Term),(eval_args(Term,Y),Y\==Term)). + +print_goals(TermV):- write_src(TermV). + + +if_or_else(Goal,Else):- call(Goal)*->true;call(Else). + +interacting:- tracing,!. +interacting:- current_prolog_flag(debug,true),!. +interacting:- option_value(interactive,true),!. + +% call_max_time(+Goal, +MaxTime, +Else) +call_max_time(Goal,_MaxTime, Else) :- interacting,!, if_or_else(Goal,Else). +call_max_time(Goal,_MaxTime, Else) :- !, if_or_else(Goal,Else). +call_max_time(Goal, MaxTime, Else) :- + catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). + + +catch_err(G,E,C):- catch(G,E,(atom(E)->throw(E);C)). + +%repl:- option_value('repl',prolog),!,prolog. +%:- ensure_loaded(metta_toplevel). + +%:- discontiguous do_metta_exec/3. + +repl:- setup_call_cleanup(flag(repl_level,Was,Was+1),repl0, + (flag(repl_level,_,Was),(Was==0 -> maybe_halt(7) ; true))). + +repl0:- catch(repl2,end_of_input,true). +repl1:- + with_option('doing_repl',true, + with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). +repl2:- +%notrace((current_input(In),nop(catch(load_history,_,true)))), + % ignore(install_readline(In)), + repeat, + %with_option(not_a_reload,true,make), + catch(once(repl3),restart_reading,true),fail. +repl3:- + notrace(( flag(eval_num,_,0), + current_space(Self), + ((nb_current(read_mode,Mode),Mode\==[])->true;Mode='!'), + ignore(shell('stty sane ; stty echo')), + current_input(In), + format(atom(P),'metta ~w ~w> ',[Self, Mode]))), + setup_call_cleanup( + notrace(prompt(Was,P)), + notrace((ttyflush,read_metta(In,Expr),ttyflush)), + notrace(prompt(_,Was))), + ignore(shell('stty sane ; stty echo')), + notrace(ignore(check_has_directive(Expr))), + notrace(if_t(Expr==end_of_file,throw(end_of_input))), + once(do_metta(repl_true,Mode,Self,Expr,_)). + +check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. +check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). +check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,notrace(throw(restart_reading)). +check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). +check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). +check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(read_mode,ModeChar). +check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),check_has_directive(NEV,true). +check_has_directive(_). +set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). +set_directive(N,V):- N==mode,!,set_directive(read_mode,V). +set_directive(N,V):- show_call(set_option_value(N,V)),!,notrace(throw(restart_reading)). + +read_pending_white_codes(In):- + read_pending_codes(In,[10],[]),!. +read_pending_white_codes(_). + +call_for_term_variables4v(Term,[] ,as_tf(Term,TF),NamedVarsList,TF):- get_global_varnames(NamedVarsList),!. +call_for_term_variables4v(Term,[X] , Term, NamedVarsList,X):- get_global_varnames(NamedVarsList). + + +not_in_eq(List, Element) :- + member(V, List), V == Element. + +get_term_variables(Term, DontCaresN, CSingletonsN, CNonSingletonsN) :- + term_variables(Term, AllVars), + get_global_varnames(VNs), + writeqln(term_variables(Term, AllVars)=VNs), + term_singletons(Term, Singletons), + term_dont_cares(Term, DontCares), + include(not_in_eq(Singletons), AllVars, NonSingletons), + include(not_in_eq(DontCares), NonSingletons, CNonSingletons), + include(not_in_eq(DontCares), Singletons, CSingletons), + maplist(into_named_vars,[DontCares, CSingletons, CNonSingletons], + [DontCaresN, CSingletonsN, CNonSingletonsN]), + writeqln([DontCaresN, CSingletonsN, CNonSingletonsN]). + +term_dont_cares(Term, DontCares):- + term_variables(Term, AllVars), + get_global_varnames(VNs), + include(has_sub_var(AllVars),VNs,HVNs), + include(underscore_vars,HVNs,DontCareNs), + maplist(arg(2),DontCareNs,DontCares). + +into_named_vars(Vars,L):- is_list(Vars), !, maplist(name_for_var_vn,Vars,L). +into_named_vars(Vars,L):- term_variables(Vars,VVs),!,into_named_vars(VVs,L). + +has_sub_var(AllVars,_=V):- sub_var(V,AllVars). +underscore_vars(V):- var(V),!,name_for_var(V,N),!,underscore_vars(N). +underscore_vars(N=_):- !, atomic(N),!,underscore_vars(N). +underscore_vars(N):- atomic(N),!,atom_concat('_',_,N). + +get_global_varnames(VNs):- nb_current('variable_names',VNs),VNs\==[],!. +get_global_varnames(VNs):- prolog_load_context(variable_names,VNs),!. +maybe_set_var_names(List):- List==[],!. +maybe_set_var_names(List):- % wdmsg(maybe_set_var_names(List)), + is_list(List),!,nb_linkval(variable_names,List). +maybe_set_var_names(_). + +name_for_var_vn(V,N=V):- name_for_var(V,N). + +name_for_var(V,N):- var(V),!,get_global_varnames(VNs),member(N=VV,VNs),VV==V,!. +name_for_var(N=_,N):- !. +name_for_var(V,N):- term_to_atom(V,N),!. + + + %call_for_term_variables5(Term,[],as_tf(Term,TF),[],TF):- atom(Term),!. +call_for_term_variables5(Term,[],[],[],as_tf(Term,TF),[],TF):- ground(Term),!. +call_for_term_variables5(Term,DC,[],[],call_nth(Term,TF),DC,TF):- ground(Term),!. +call_for_term_variables5(Term,_,[],[_=Var],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,[_=Var],[],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,Vars,[_=Var],Term,Vars,Var). +call_for_term_variables5(Term,_,[_=Var],Vars,Term,Vars,Var). +call_for_term_variables5(Term,_,SVars,Vars,call_nth(Term,Count),[Vars,SVars],Count). + + + +is_interactive(From):- notrace(is_interactive0(From)). +is_interactive0(From):- From==false,!,fail. +is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). +is_interactive0(From):- From = repl_true,!. +is_interactive0(From):- From = true,!. + + +:- set_prolog_flag(history, 20). + +inside_assert(Var,Var):- \+ compound(Var),!. +inside_assert([H,IA,_],IA):- atom(H),atom_concat('assert',_,H),!. +inside_assert(Conz,Conz):- is_conz(Conz),!. +inside_assert(call(I),O):- !, inside_assert(I,O). +inside_assert( ?-(I), O):- !, inside_assert(I,O). +inside_assert( :-(I), O):- !, inside_assert(I,O). +inside_assert(exec(I),O):- !, inside_assert(I,O). +inside_assert(eval_H(A,B,I,C),eval_H(A,B,O,C)):- !, inside_assert(I,O). +inside_assert(eval_H(I,C),eval_H(O,C)):- !, inside_assert(I,O). +inside_assert(Eval,O):- functor(Eval,F,A), atom_concat('eval',_,F), A1 is A-1, arg(A1,Eval,I),!, inside_assert(I,O). +inside_assert(I,O):- I=..[_,F|_],!,compound(F),inside_assert(F,O). +inside_assert(Var,Var). + +current_space(Self):- ((nb_current(self_space,Self),Self\==[])->true;Self='&self'). + +eval(all(Form)):- nonvar(Form), !, forall(eval(Form,_),true). +eval(Form):- + current_space(Self), + do_metta(true,exec,Self,Form,_Out). + +eval(Self,Form):- + current_space(SelfS),SelfS==Self,!, + do_metta(true,exec,Self,Form,_Out). +eval(Form,Out):- + current_space(Self), + eval(Self,Form,Out). + + +eval(Self,Form,Out):- + do_metta(prolog,exec,Self,Form,Out). + +name_vars(X='$VAR'(X)). + +interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + notrace(( + Result = res(FOut), + inside_assert(Term,BaseEval), + option_else(answer,Leap,each), + Control = contrl(Leap), + Skipping = _, + % Initialize Control as a compound term with 'each' as its argument. + %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), + (((From = file(_Filename), option_value('exec',skip), \+ always_exec(BaseEval))) + -> (GG = (skip(Term),deterministic(Complete)), + %Output = + %FOut = "Skipped", + Skipping = 1,!, + %color_g_mesg('#da70d6', (write('% SKIPPING: '), writeq(eval_H(100,Self,BaseEval,X)),writeln('.'))), + % color_g_mesg('#fa90f6', (writeln('; SKIPPING'), with_indents(true,write_src(exec(BaseEval))))), + % if_t(is_list(BaseEval),add_history_src(exec(TermV))), + true + ) + ; GG = locally(set_prolog_flag(gc,false), + ( (dcall(Term),deterministic(Complete)), nb_setarg(1,Result,Output))), + + !, % metta_toplevel + flag(result_num,_,0), + PL=eval(Self,BaseEval,X), + ( % with_indents(true, + \+ \+ ( + maplist(name_vars,NamedVarsList), + name_vars('OUT'=X), + % add_history_src(exec(BaseEval)), + write_exec(TermV), + if_t(Skipping==1,writeln(' ; SKIPPING')), + if_t(TermV\=BaseEval,color_g_mesg('#fa90f6', (write('; '), with_indents(false,write_src(exec(BaseEval)))))), + if_t((is_interactive(From);Skipping==1), + ( + if_t( \+ option_value(doing_repl,true), + if_t( \+ option_value(repl,true), + if_t( option_value(prolog,true), add_history_pl(PL)))), + if_t(option_value(repl,true), add_history_src(exec(BaseEval))))), + + color_g_mesg('#da70d6', (write('% DEBUG: '), writeq(PL),writeln('.'))), + true))))), + + (forall_interactive( + From, WasInteractive,Complete,may_rtrace(GG), + ((Complete==true->!;true), + %repeat, + set_option_value(interactive,WasInteractive), + nb_setarg(1,Result,Output), + read_pending_codes(user_input,_,[]), + flag(result_num,R,R+1), + flag(result_num,ResNum,ResNum), + (((ResNum==1,Complete==true)->(format('~NDeterministic: ', []), !); %or Nondet + ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); + format('~NNDet Result(~w): ',[ResNum])))), + color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), + color_g_mesg(green, + ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))), + ((Complete\==true, WasInteractive, Control \== contrl(leap))-> + (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, + (C=='b' -> (once(repl),fail) ; + (C=='m' -> make ; + (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; + (C=='T' -> (set_debug(eval,true)); + (C==';' -> true ; + (C==esc('[A',[27,91,65]) -> nb_setarg(1, Control, leap) ; + (C=='l' -> nb_setarg(1, Control, leap) ; + (((C=='\n');(C=='\r')) -> (!,fail); + (!,fail))))))))))); + (Complete\==true, \+ WasInteractive, Control == contrl(leap)) -> true ; + (((Complete==true ->! ; true))))) + *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) + ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,fail);true))), + ignore(Result = res(FOut)). + + +get_single_char_key(O):- get_single_char(C),get_single_char_key(C,O). +get_single_char_key(27,esc(A,[27|O])):- !,read_pending_codes(user_input,O,[]),name(A,O). +get_single_char_key(C,A):- name(A,[C]). + +forall_interactive(file(_),false,Complete,Goal,After):- !, Goal, (Complete==true -> ( After,!) ; ( \+ After )). +forall_interactive(prolog,false,Complete,Goal,After):- !, Goal, (Complete == true -> ! ; true), quietly(After). +forall_interactive(From,WasInteractive,Complete,Goal,After):- + (is_interactive(From) -> WasInteractive = true ; WasInteractive = false),!, + Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). + +print_var(Name=Var) :- print_var(Name,Var). +print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. + +% Entry point for the user to call with tracing enabled +toplevel_goal(Goal) :- + term_variables(Goal,Vars), + trace_goal(Vars, Goal, trace_off). + +% Entry point for the user to call with tracing enabled +trace_goal(Goal) :- + trace_goal(Goal, trace_on). + +% Handle tracing +trace_goal(Goal, Tracing) :- + (Tracing == trace_on -> writeln('Entering goal:'), writeln(Goal) ; true), + term_variables(Goal, Variables), + ( call(Goal) -> + (Tracing == trace_on -> writeln('Goal succeeded with:'), writeln(Variables) ; true), + interact(Variables, Goal, Tracing) + ; (Tracing == trace_on -> writeln('Goal failed.') ; true), + false + ). + +% Interaction with the user +interact(Variables, Goal, Tracing) :- + call(Goal),write('Solution: '), write_src(Variables), + write(' [;next]?'), + get_single_char(Code), + (command(Code, Command) -> + handle_command(Command, Variables, Goal, Tracing) + ; writeln('Unknown command.'), interact(Variables, Goal, Tracing) % handle unknown commands + ). + +install_readline(Input):- + add_history_string("!(pfb3)"), + add_history_string("!(load-flybase-full)"), + add_history_string("!(obo-alt-id $X BS:00063)"), + add_history_string("!(and (total-rows $T TR$) (unique-values $T2 $Col $TR))"), + ignore(editline:el_wrap), + ignore(editline:add_prolog_commands(Input)). + + + + +% Command descriptions +command(59, retry). % ';' to retry +command(115, skip). % 's' to skip to the next solution +command(108, leap). % 'l' to leap (end the debugging session) +command(103, goals). % 'g' to show current goals +command(102, fail). % 'f' to force fail +command(116, trace). % 't' to toggle tracing +command(117, up). % 'u' to continue without interruption +command(101, exit). % 'e' to exit the debugger +command(97, abort). % 'a' to abort +command(98, break). % 'b' to set a breakpoint +command(99, creep). % 'c' to proceed step by step +command(104, help). % 'h' for help +command(65, alternatives). % 'A' for alternatives +command(109, make). % 'm' for make (recompile) +command(67, compile). % 'C' for Compile (compile new executable) + +:- style_check(-singleton). + +% Command implementations +handle_command(make, Variables, Goal, Tracing) :- + writeln('Recompiling...'), + % Insert the logic to recompile the code. + % This might involve calling `make/0` or similar. + make, % This is assuming your Prolog environment has a `make` predicate. + fail. % interact(Variables, Goal, Tracing). + +handle_command(compile, Variables, Goal, Tracing) :- + writeln('Compiling new executable...'), + % Insert the logic to compile a new executable. + % This will depend on how you compile Prolog programs in your environment. + % For example, you might use `qsave_program/2` to create an executable. + % Pseudocode: compile_executable(ExecutableName) + fail. % interact(Variables, Goal, Tracing). +handle_command(alternatives, Variables, Goal, Tracing) :- + writeln('Showing alternatives...'), + % Here you would include the logic for displaying the alternatives. + % For example, showing other clauses that could be tried for the current goal. + writeln('Alternatives for current goal:'), + writeln(Goal), + % Pseudocode: find_alternatives(Goal, Alternatives) + % Pseudocode: print_alternatives(Alternatives) + fail. % interact(Variables, Goal, Tracing). +% Extend the command handling with the 'help' command implementation +handle_command(help, Variables, Goal, Tracing) :- + print_help, + fail. % interact(Variables, Goal, Tracing). +handle_command(abort, _, _, _) :- + writeln('Aborting...'), abort. +handle_command(break, Variables, Goal, Tracing) :- + writeln('Breakpoint set.'), % Here you should define what 'setting a breakpoint' means in your context + fail. % interact(Variables, Goal, Tracing). +handle_command(creep, Variables, Goal, Tracing) :- + writeln('Creeping...'), % Here you should define how to 'creep' (step by step execution) through the code + trace. % interact(Variables, Goal, Tracing). +handle_command(retry, Variables, Goal, Tracing) :- + writeln('Continuing...'),!. + %trace_goal(Goal, Tracing). +handle_command(skip, Variables, Goal, Tracing) :- + writeln('Skipping...'). +handle_command(leap, _, _, _) :- + writeln('Leaping...'), nontrace. % Cut to ensure we stop the debugger +handle_command(goals, Variables, Goal, Tracing) :- + writeln('Current goal:'), writeln(Goal), + writeln('Current variables:'), writeln(Variables), + bt,fail. % interact(Variables, Goal, Tracing). +handle_command(fail, _, _, _) :- + writeln('Forcing failure...'), fail. +handle_command(trace, Variables, Goal, Tracing) :- + (Tracing == trace_on -> + NewTracing = trace_off, writeln('Tracing disabled.') + ; NewTracing = trace_on, writeln('Tracing enabled.') + ), + interact(Variables, Goal, NewTracing). +handle_command(up, Variables, Goal, Tracing) :- + writeln('Continuing up...'), + repeat, + ( trace_goal(Goal, Tracing) -> true ; !, fail ). +handle_command(exit, _, _, _) :- + writeln('Exiting debugger...'), !. % Cut to ensure we exit the debugger + +:- style_check(+singleton). + + +% Help description +print_help :- + writeln('Debugger commands:'), + writeln('(;) next - Retry with next solution.'), + writeln('(g) goal - Show the current goal.'), + writeln('(u) up - Finish this goal without interruption.'), + writeln('(s) skip - Skip to the next solution.'), + writeln('(c) creep or - Proceed step by step.'), + writeln('(l) leap - Leap over (the debugging).'), + writeln('(f) fail - Force the current goal to fail.'), + writeln('(B) back - Go back to the previous step.'), + writeln('(t) trace - Toggle tracing on or off.'), + writeln('(e) exit - Exit the debugger.'), + writeln('(a) abort - Abort the current operation.'), + writeln('(b) break - Break to a new sub-REPL.'), + writeln('(h) help - Display this help message.'), + writeln('(A) alternatives - Show alternative solutions.'), + writeln('(m) make - Recompile/Update the current running code.'), + writeln('(C) compile - Compile a fresh executable (based on the running state).'), + writeln('(E) error msg - Show the latest error messages.'), + writeln('(r) retry - Retry the previous command.'), + writeln('(I) info - Show information about the current state.'), + !. + + + + +really_trace:- once(option_value('exec',rtrace);option_value('eval',rtrace);is_debugging((exec));is_debugging((eval))). +% !(pragma! exec rtrace) +may_rtrace(Goal):- really_trace,!, really_rtrace(Goal). +may_rtrace(Goal):- rtrace_on_existence_error(time_eval(dcall(Goal)))*->true;really_rtrace(Goal). +really_rtrace(Goal):- use_metta_compiler,!,rtrace(call(Goal)). +really_rtrace(Goal):- with_debug((eval),with_debug((exec),Goal)). + +rtrace_on_existence_error(G):- !, catch(G,E,(wdmsg(E),rtrace(G))). +%rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). + + + +write_compiled_exec(Exec,Goal):- +% ignore(Res = '$VAR'('ExecRes')), + compile_for_exec(Res,Exec,Goal), + notrace((color_g_mesg('#114411',portray_clause(exec(Res):-Goal)))). + +verbose_unify(Term):- verbose_unify(trace,Term). +verbose_unify(What,Term):- term_variables(Term,Vars),maplist(verbose_unify0(What),Vars),!. +verbose_unify0(What,Var):- put_attr(Var,verbose_unify,What). +verbose_unify:attr_unify_hook(Attr, Value) :- + format('~N~q~n',[verbose_unify:attr_unify_hook(Attr, Value)]), + vu(Attr,Value). +vu(_Attr,Value):- is_ftVar(Value),!. +vu(fail,_Value):- !, fail. +vu(true,_Value):- !. +vu(trace,_Value):- trace. +:- nodebug(metta(eval)). +:- nodebug(metta(exec)). +% Measures the execution time of a Prolog goal and displays the duration in seconds, +% milliseconds, or microseconds, depending on the execution time. +% +% Args: +% - Goal: The Prolog goal to be executed and timed. +% +% The predicate uses the `statistics/2` predicate to measure the CPU time before +% and after executing the provided goal. It calculates the elapsed time in seconds +% and converts it to milliseconds and microseconds. The output is formatted to +% provide clear timing information: +% +% - If the execution takes more than 2 seconds, it displays the time in seconds. +% - If the execution takes between 1 millisecond and 2 seconds, it displays the time +% in milliseconds. +% - If the execution takes less than 1 millisecond, it displays the time in microseconds. +% +% Example usage: +% ?- time_eval(my_goal(X)). +% +% ?- time_eval(sleep(0.95)). +% +% Output examples: +% ; Evaluation took 2.34 seconds. +% ; Evaluation took 123.45 ms. +% ; Evaluation took 0.012 ms. (12.33 microseconds) +% +time_eval(Goal):- + time_eval('Evaluation',Goal). +time_eval(What,Goal) :- + statistics(cputime, Start), + call(Goal), + statistics(cputime, End), + Seconds is End - Start, + Milliseconds is Seconds * 1_000, + (Seconds > 2 + -> format('; ~w took ~2f seconds.~n', [What, Seconds]) + ; (Milliseconds >= 1 + -> format('; ~w took ~3f secs. (~2f milliseconds) ~n', [What, Seconds, Milliseconds]) + ;( Micro is Milliseconds * 1_000, + format('; ~w took ~6f secs. (~2f microseconds) ~n', [What, Seconds, Micro])))). + +example0(_):- fail. +example1(a). example1(_):- fail. +example2(a). example2(b). example2(_):- fail. +example3(a). example3(b). example3(c). example3(_):- fail. +%eval_H(100,'&self',['change-state!','&var',[+,1,['get-state','&var']]],OUT) +%dcall(X):- (call(X),deterministic(YN)),trace,((YN==true)->!;true). +dcall(XX):- !, call(XX). +dcall(XX):- + USol = sol(dead), + copy_term(XX,X), + call_nth(USol,X,Nth,Det,Prev), + %wdmsg(call_nth(USol,X,Nth,Det,Prev)), + XX=Prev, + (Det==yes -> (!, (XX=Prev;XX=X)) ; + (((var(Nth) -> ( ! , Prev\==dead) ; + true), + (Nth==1 -> ! ; true)))). + +call_nth(USol,XX,Nth,Det,Prev):- + repeat, + ((call_nth(XX,Nth),deterministic(Det),arg(1,USol,Prev))*-> + ( nb_setarg(1,USol,XX)) + ; (!, arg(1,USol,Prev))). + +catch_red(Term):- catch(Term,E,pp_m(red,in(Term,E))). + +s2p(I,O):- sexpr_s2p(I,O),!. + +discover_head(Self,Load,Head):- + ignore(([Fn|PredDecl]=Head, + nop(( arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_head(Self,Fn,EachArg)))))). + +discover_body(Self,Load,Body):- + nop(( [Fn|PredDecl] = Body, arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_body(Self,Fn,EachArg)))). + +decl_length(TypeDecL,Len):- is_list(TypeDecL),!,length(TypeDecL,Len). +decl_length(_TypeDecL,1). + +arg_types([['->'|L]],R,LR):-!, arg_types(L,R,LR). +arg_types(['->'|L],R,LR):-!, arg_types(L,R,LR). +arg_types(L,R,LR):- append(L,R,LR). + +%:- ensure_loaded('../../examples/factorial'). +%:- ensure_loaded('../../examples/fibonacci'). + +%print_preds_to_functs:-preds_to_functs_src(factorial_tail_basic) + +:- dynamic(began_loon/1). +loon:- loon(typein). + +catch_red_ignore(G):- catch_red(G)*->true;true. + +:- export(loon/1). +:- public(loon/1). + +%loon(Why):- began_loon(Why),!,wdmsg(begun_loon(Why)). +loon(Why):- is_compiling,!,wdmsg(compiling_loon(Why)),!. +%loon( _Y):- current_prolog_flag(os_argv,ArgV),member('-s',ArgV),!. +loon(Why):- is_compiled, Why\==toplevel,Why\==default, Why\==program,!,wdmsg(compiled_loon(Why)),!. +loon(Why):- began_loon(_),!,wdmsg(skip_loon(Why)). +loon(Why):- wdmsg(began_loon(Why)), assert(began_loon(Why)), + do_loon. + +do_loon:- + ignore(( + \+ prolog_load_context(reloading,true), + maplist(catch_red_ignore,[ + + metta_final, + load_history, + update_changed_files, + run_cmd_args, + pre_halt, + maybe_halt(7)]))),!. + + + +pre_halt:- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),pre_halt)). +pre_halt:- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),pre_halt)). +pre_halt:- loonit_report. +%loon:- time(loon_metta('./examples/compat/test_scripts/*.metta')),fail. +%loon:- repl, (option_value('halt',false)->true;halt(7)). +%maybe_halt(Seven):- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,halt(Seven). +maybe_halt(_):- once(pre_halt), fail. +maybe_halt(Seven):- option_value('halt',true),!,halt(Seven). +maybe_halt(Seven):- wdmsg(maybe_halt(Seven)). + +is_compiling:- current_prolog_flag(os_argv,ArgV),member(E,ArgV), + (E==qcompile_mettalog;E==qsave_program),!. +is_compiled:- current_prolog_flag(os_argv,ArgV),\+ member('swipl',ArgV),!. +is_converting:- nb_current('convert','True'),!. +is_converting:- current_prolog_flag(os_argv,ArgV), member('--convert',ArgV),!. +show_os_argv:- current_prolog_flag(os_argv,ArgV),write('; libswipl: '),writeln(ArgV). +is_pyswip:- current_prolog_flag(os_argv,ArgV),member( './',ArgV). +% libswipl: ['./','-q',--home=/usr/local/lib/swipl] + +:- initialization(show_os_argv). + +:- initialization(loon(program),program). +:- initialization(loon(default)). + +ensure_mettalog_system:- + abolish(began_loon/1), + dynamic(began_loon/1), + system:use_module(library(quasi_quotations)), + system:use_module(library(hashtable)), + system:use_module(library(gensym)), + system:use_module(library(sort)), + system:use_module(library(writef)), + system:use_module(library(rbtrees)), + system:use_module(library(dicts)), + system:use_module(library(shell)), + system:use_module(library(edinburgh)), + % system:use_module(library(lists)), + system:use_module(library(statistics)), + system:use_module(library(nb_set)), + system:use_module(library(assoc)), + system:use_module(library(pairs)), + user:use_module(library(swi_ide)), + user:use_module(library(prolog_profile)), + ensure_loaded('./metta_vspace/pyswip/flybase_convert'), + ensure_loaded('./metta_vspace/pyswip/flybase_main'), + autoload_all, + make, + autoload_all, + %pack_install(predicate_streams, [upgrade(true),global(true)]), + %pack_install(logicmoo_utils, [upgrade(true),global(true)]), + %pack_install(dictoo, [upgrade(true),global(true)]), + !. + +file_save_name(E,_):- \+ atom(E),!,fail. +file_save_name(E,Name):- file_base_name(E,BN),BN\==E,!,file_save_name(BN,Name). +file_save_name(E,E):- atom_concat('Sav.',_,E),!. +file_save_name(E,E):- atom_concat('Bin.',_,E),!. +before_underscore(E,N):-atomic_list_concat([N|_],'_',E),!. +save_name(Name):- current_prolog_flag(os_argv,ArgV),member(E,ArgV),file_save_name(E,Name),!. +next_save_name(Name):- save_name(E), + before_underscore(E,N), + atom_concat(N,'_',Stem), + gensym(Stem,Name), + \+ exists_file(Name), + Name\==E,!. +next_save_name('Sav.MeTTaLog'). +qcompile_mettalog:- + ensure_mettalog_system, + catch(qsave_program('Sav.MeTTaLog', + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(true)]),E,writeln(E)), + halt(0). +qsave_program:- ensure_mettalog_system, next_save_name(Name), + catch(qsave_program(Name, + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(false)]),E,writeln(E)), + !. + + +:- initialization(update_changed_files,restore). + +:- ignore((( + \+ prolog_load_context(reloading,true), + initialization(loon(restore),restore), + metta_final +))). +:- set_prolog_flag(metta_interp,ready). diff --git a/metta_vspace/pyswip-want/metta_interp.pl b/metta_vspace/pyswip-want/metta_interp.pl new file mode 100755 index 00000000..c0763954 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_interp.pl @@ -0,0 +1,2101 @@ +:- encoding(iso_latin_1). +:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). +is_compiling:- current_prolog_flag(os_argv,ArgV),member(E,ArgV), + (E==qcompile_mettalog;E==qsave_program),!. +is_compiled:- current_prolog_flag(os_argv,ArgV), member('-x',ArgV),!. +is_compiled:- current_prolog_flag(os_argv,ArgV),\+ member('swipl',ArgV),!. +is_converting:- nb_current('convert','True'),!. +is_converting:- current_prolog_flag(os_argv,ArgV), member('--convert',ArgV),!. +show_os_argv:- current_prolog_flag(os_argv,ArgV),write('; libswipl: '),writeln(ArgV). +is_pyswip:- current_prolog_flag(os_argv,ArgV),member( './',ArgV). +:- multifile(is_metta_data_functor/1). +:- dynamic(is_metta_data_functor/1). +:- multifile(is_nb_space/1). +:- dynamic(is_nb_space/1). +%:- '$set_source_module'('user'). +:- set_stream(user_input,tty(true)). +:- use_module(library(readline)). +%:- use_module(library(editline)). +:- use_module(library(filesex)). +:- use_module(library(shell)). +%:- use_module(library(tabling)). +:- use_module(library(system)). +:- ensure_loaded(metta_compiler). +:- ensure_loaded(metta_printer). +:- ensure_loaded(metta_convert). +%:- ensure_loaded(metta_types). +:- ensure_loaded(metta_data). +:- ensure_loaded(metta_space). +:- ensure_loaded(metta_eval). +:- ensure_loaded(metta_server). +:- ensure_loaded(flybase_main). +:- set_stream(user_input,tty(true)). +:- set_prolog_flag(encoding,iso_latin_1). +:- set_prolog_flag(encoding,utf8). +%:- set_prolog_flag(encoding,octet). +/* +Now PASSING NARS.TEC:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip\metta_interp.pl +C:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip1\metta_interp.pl +STS1.01) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.08) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.14) +Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.15) +Now PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.15) +Now PASSING TEST-SCRIPTS.E2-STATES.08) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.02) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.07) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.09) +PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.11) +PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.14) +PASSING TEST-SCRIPTS.E2-STATES.07) +----------------------------------------- +FAILING TEST-SCRIPTS.D5-AUTO-TYPES.01) +Now FAILING TEST-SCRIPTS.00-LANG-CASE.03) +Now FAILING TEST-SCRIPTS.B5-TYPES-PRELIM.19) +Now FAILING TEST-SCRIPTS.C1-GROUNDED-BASIC.20) + +*/ + + +%option_value_def('repl',auto). +option_value_def('prolog',false). +option_value_def('compile',false). +option_value_def('table',false). +option_value_def(no_repeats,false). +option_value_def('time',true). +option_value_def('exec',true). +option_value_def('html',false). +option_value_def('python',false). +%option_value_def('halt',false). +option_value_def('doing_repl',false). +option_value_def('test-retval',false). +option_value_def('trace-length',100). +option_value_def('stack-max',100). +option_value_def('trace-on-overtime',20.0). +option_value_def('trace-on-overflow',false). +option_value_def('exeout','./Sav.godlike.MeTTaLog'). + + + +option_value_def('trace-on-error',true). +%option_value_def('trace-on-load',false). +option_value_def('trace-on-exec',true). +option_value_def('trace-on-eval',true). +option_value_def('trace-on-fail',false). +option_value_def('trace-on-pass',false). + + + + +set_is_unit_test(TF):- + forall(option_value_def(A,B),set_option_value(A,B)), + set_option_value('trace-on-pass',false), + set_option_value('trace-on-fail',false), + if_t(TF,set_option_value('exec',rtrace)), + if_t(TF,set_option_value('eval',rtrace)), + set_option_value('trace-on-load',TF), + set_option_value('trace-on-exec',TF), + set_option_value('trace-on-eval',TF), + + !. + +:- set_is_unit_test(false). + +trace_on_fail:- option_value('trace-on-fail',true). +trace_on_overflow:- option_value('trace-on-overflow',true). +trace_on_pass:- option_value('trace-on-pass',true). +doing_repl:- option_value('doing_repl',true). +if_repl(Goal):- doing_repl->call(Goal);true. + +show_options_values:- + forall((nb_current(N,V),\+((atom(N),atom_concat('$',_,N)))),write_src_nl(['pragma!',N,V])). + +any_floats(S):- member(E,S),float(E),!. + +% ============================ +% %%%% Arithmetic Operations +% ============================ +%:- use_module(library(clpfd)). +:- use_module(library(clpq)). +%:- use_module(library(clpr)). + +% Addition +%'+'(Addend1, Addend2, Sum):- \+ any_floats([Addend1, Addend2, Sum]),!,Sum #= Addend1+Addend2 . +'+'(Addend1, Addend2, Sum):- notrace(catch_err(plus(Addend1, Addend2, Sum),_,fail)),!. +'+'(Addend1, Addend2, Sum):- {Sum = Addend1+Addend2}. +% Subtraction +'-'(Sum, Addend1, Addend2):- '+'(Addend1, Addend2, Sum). + +% Multiplication +'*'(Factor1, Factor2, Product):- {Product = Factor1*Factor2}. +% Division +'/'(Dividend, Divisor, Quotient):- {Dividend = Quotient * Divisor}. +% Modulus +'mod'(Dividend, Divisor, Remainder):- {Remainder = Dividend mod Divisor}. +% Exponentiation +'exp'(Base, Exponent, Result):- eval_H(['exp', Base, Exponent], Result). +% Square Root +'sqrt'(Number, Root):- eval_H(['sqrt', Number], Root). + +% ============================ +% %%%% List Operations +% ============================ +% Retrieve Head of the List +'car-atom'(List, Head):- eval_H(['car-atom', List], Head). +% Retrieve Tail of the List +'cdr-atom'(List, Tail):- eval_H(['cdr-atom', List], Tail). +% Construct a List +'Cons'(Element, List, 'Cons'(Element, List)):- !. +% Collapse List +'collapse'(List, CollapsedList):- eval_H(['collapse', List], CollapsedList). +% Count Elements in List +'CountElement'(List, Count):- eval_H(['CountElement', List], Count). +% Find Length of List +%'length'(List, Length):- eval_H(['length', List], Length). + +% ============================ +% %%%% Nondet Opteration +% ============================ +% Superpose a List +'superpose'(List, SuperposedList):- eval_H(['superpose', List], SuperposedList). + +% ============================ +% %%%% Testing +% ============================ + +% `assertEqual` Predicate +% This predicate is used for asserting that the Expected value is equal to the Actual value. +% Expected: The value that is expected. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: `assertEqual(5, 5, Result).` would succeed, setting Result to true (or some success indicator). +%'assertEqual'(Expected, Actual, Result):- use_metta_compiler,!,as_tf((Expected=Actual),Result). +'assertEqual'(Expected, Actual, Result):- ignore(Expected=Actual), eval_H(['assertEqual', Expected, Actual], Result). + +% `assertEqualToResult` Predicate +% This predicate asserts that the Expected value is equal to the Result of evaluating Actual. +% Expected: The value that is expected. +% Actual: The expression whose evaluation is being checked against the Expected value. +% Result: The result of the evaluation of the equality. +% Example: If Actual evaluates to the Expected value, this would succeed, setting Result to true (or some success indicator). +'assertEqualToResult'(Expected, Actual, Result):- eval_H(['assertEqualToResult', Expected, Actual], Result). + +% `assertFalse` Predicate +% This predicate is used to assert that the evaluation of EvalThis is false. +% EvalThis: The expression that is being evaluated and checked for falsehood. +% Result: The result of the evaluation. +% Example: `assertFalse((1 > 2), Result).` would succeed, setting Result to true (or some success indicator), as 1 > 2 is false. +'assertFalse'(EvalThis, Result):- eval_H(['assertFalse', EvalThis], Result). + +% `assertNotEqual` Predicate +% This predicate asserts that the Expected value is not equal to the Actual value. +% Expected: The value that is expected not to match the Actual value. +% Actual: The value that is being checked against the Expected value. +% Result: The result of the evaluation of the inequality. +% Example: `assertNotEqual(5, 6, Result).` would succeed, setting Result to true (or some success indicator). +'assertNotEqual'(Expected, Actual, Result):- eval_H(['assertNotEqual', Expected, Actual], Result). + +% `assertTrue` Predicate +% This predicate is used to assert that the evaluation of EvalThis is true. +% EvalThis: The expression that is being evaluated and checked for truth. +% Result: The result of the evaluation. +% Example: `assertTrue((2 > 1), Result).` would succeed, setting Result to true (or some success indicator), as 2 > 1 is true. +'assertTrue'(EvalThis, Result):- eval_H(['assertTrue', EvalThis], Result). + +% `rtrace` Predicate +% This predicate is likely used for debugging; possibly for tracing the evaluation of Condition. +% Condition: The condition/expression being traced. +% EvalResult: The result of the evaluation of Condition. +% Example: `rtrace((2 + 2), EvalResult).` would trace the evaluation of 2 + 2 and store its result in EvalResult. +'rtrace'(Condition, EvalResult):- eval_H(['rtrace', Condition], EvalResult). + +% `time` Predicate +% This predicate is used to measure the time taken to evaluate EvalThis. +% EvalThis: The expression whose evaluation time is being measured. +% EvalResult: The result of the evaluation of EvalThis. +% Example: `time((factorial(5)), EvalResult).` would measure the time taken to evaluate factorial(5) and store its result in EvalResult. +'time'(EvalThis, EvalResult):- eval_H(['time', EvalThis], EvalResult). + +% ============================ +% %%%% Debugging, Printing and Utility Operations +% ============================ +% REPL Evaluation +'repl!'(EvalResult):- eval_H(['repl!'], EvalResult). +% Condition Evaluation +'!'(Condition, EvalResult):- eval_H(['!', Condition], EvalResult). +% Import File into Environment +'import!'(Environment, Filename, Namespace):- eval_H(['import!', Environment, Filename], Namespace). +% Evaluate Expression with Pragma +'pragma!'(Environment, Expression, EvalValue):- eval_H(['pragma!', Environment, Expression], EvalValue). +% Print Message to Console +'print'(Message, EvalResult):- eval_H(['print', Message], EvalResult). +% No Operation, Returns EvalResult unchanged +'nop'(Expression, EvalResult):- eval_H(['nop', Expression], EvalResult). + +% ============================ +% %%%% Variable Bindings +% ============================ +% Bind Variables +'bind!'(Environment, Variable, Value):- eval_H(['bind!', Environment, Variable], Value). +% Let binding for single variable +'let'(Variable, Expression, Body, Result):- eval_H(['let', Variable, Expression, Body], Result). +% Sequential let binding +'let*'(Bindings, Body, Result):- eval_H(['let*', Bindings, Body], Result). + +% ============================ +% %%%% Reflection +% ============================ +% Get Type of Value +'get-type'(Value, Type):- eval_H(['get-type', Value], Type). + + +metta_cmd_args(Rest):- current_prolog_flag(late_metta_opts,Rest),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(os_argv,P),append(_,['--'|Rest],P),!. +metta_cmd_args(Rest):- current_prolog_flag(argv,Rest). +run_cmd_args:- metta_cmd_args(Rest), !, do_cmdline_load_metta('&self',Rest). + + +metta_make_hook:- loonit_reset, option_value(not_a_reload,true),!. +metta_make_hook:- + metta_cmd_args(Rest), into_reload_options(Rest,Reload), cmdline_load_metta('&self',Reload). + +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(after, _Some):- nop( metta_make_hook). + +into_reload_options(Reload,Reload). + +is_cmd_option(Opt,M, TF):- atom(M), + atom_concat('-',Opt,Flag), + atom_contains(M,Flag),!, + get_flag_value(M,FV), + TF=FV. + +get_flag_value(M,V):- atomic_list_concat([_,V],'=',M),!. +get_flag_value(M,false):- atom_contains(M,'-no'),!. +get_flag_value(_,true). + + +:- ignore((( + \+ prolog_load_context(reloading,true), + nop((forall(option_value_def(Opt,Default),set_option_value(Opt,Default))))))). + +%process_option_value_def:- \+ option_value('python',false), skip(ensure_loaded(metta_python)). +process_option_value_def:- option_value('python',load), ensure_loaded(metta_vspace/pyswip/metta_python). +process_option_value_def. + + +process_late_opts:- forall(process_option_value_def,true). +process_late_opts:- once(option_value('html',true)), set_is_unit_test(true). +%process_late_opts:- current_prolog_flag(os_argv,[_]),!,ignore(repl). +%process_late_opts:- halt(7). +process_late_opts. + +%do_cmdline_load_metta(_Slf,Rest):- select('--prolog',Rest,RRest),!, +% set_option_value('prolog',true), +% set_prolog_flag(late_metta_opts,RRest). +do_cmdline_load_metta(Self,Rest):- + set_prolog_flag(late_metta_opts,Rest), + forall(process_option_value_def,true), + cmdline_load_metta(Self,Rest),!, + forall(process_late_opts,true). + +load_metta_file(Self,Filemask):- atom_concat(_,'.metta',Filemask),!, load_metta(Self,Filemask). +load_metta_file(_Slf,Filemask):- load_flybase(Filemask). + +catch_abort(From,Goal):- + catch_abort(From,Goal,Goal). +catch_abort(From,TermV,Goal):- + catch(Goal,'$aborted',fbug(aborted(From,TermV))). +% done +cmdline_load_metta(_,Nil):- Nil==[],!. + +cmdline_load_metta(Self,['--repl'|Rest]):- !, repl,cmdline_load_metta(Self,Rest). +cmdline_load_metta(Self,[Filemask|Rest]):- atom(Filemask), \+ atom_concat('-',_,Filemask), + Src=user:load_metta_file(Self,Filemask), + catch_abort(Src, + (must_det_ll((nl,write('; '),write_src(Src),nl,catch_red(Src),!,flush_output)))), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,['-g',M|Rest]):- + catch_abort(['-g',M],((read_term_from_atom(M, Term, []),ignore(call(Term))))), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,['-G',Str|Rest]):- !, + current_self(Self), + catch_abort(['-G',Str],ignore(call_sexpr('!',Self,Str,_S,_Out))), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + m_opt(M,Opt),!, + is_cmd_option(Opt,M,TF),!, + fbug(is_cmd_option(Opt,M,TF)), !, set_option_value(Opt,TF), + set_tty_color_term(true), + cmdline_load_metta(Self,Rest). + +cmdline_load_metta(Self,[M|Rest]):- + format('~N'),write('; unused '), write_src(M), nl, !, + cmdline_load_metta(Self,Rest). + + +set_tty_color_term(TF):- + current_output(X),set_stream(X,tty(TF)), + set_stream(current_output,tty(TF)), + set_prolog_flag(color_term ,TF). + +m_opt(M,Opt):- + m_opt0(M,Opt1), + m_opt1(Opt1,Opt). + +m_opt1(Opt1,Opt):- atomic_list_concat([Opt|_],'=',Opt1). + +m_opt0(M,Opt):- atom_concat('--no-',Opt,M),!. +m_opt0(M,Opt):- atom_concat('--',Opt,M),!. +m_opt0(M,Opt):- atom_concat('-',Opt,M),!. + +:- set_prolog_flag(occurs_check,true). + +start_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +start_html_of(_Filename):-!. +start_html_of(_Filename):- + must_det_ll(( + S = _, + %retractall(metta_defn(Eq,S,_,_)), + nop(retractall(metta_type(S,_,_))), + %retractall(get_metta_atom(Eq,S,_,_,_)), + loonit_reset, + tee_file(TEE_FILE), + sformat(S,'cat /dev/null > "~w"',[TEE_FILE]), + + writeln(doing(S)), + ignore(shell(S)))). + +save_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. +save_html_of(_):- \+ has_loonit_results, \+ option_value('html',true). +save_html_of(_):- !, writeln('
    Return to Summaries
    '). +save_html_of(_Filename):-!. +save_html_of(Filename):- + must_det_ll(( + file_name_extension(Base,_,Filename), + file_name_extension(Base,'metta.html',HtmlFilename), + loonit_reset, + tee_file(TEE_FILE), + writeln('
    Return to Summaries
    '), + sformat(S,'ansi2html -u < "~w" > "~w" ',[TEE_FILE,HtmlFilename]), + writeln(doing(S)), + ignore(shell(S)))). + +tee_file(TEE_FILE):- getenv('TEE_FILE',TEE_FILE),!. +tee_file(TEE_FILE):- metta_dir(Dir),directory_file_path(Dir,'TEE.ansi',TEE_FILE),!. +metta_dir(Dir):- getenv('METTA_DIR',Dir),!. + +load_metta(Filename):- + %clear_spaces, + load_metta('&self',Filename). + + +load_metta(_Self,Filename):- Filename=='--repl',!,repl. +load_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + with_wild_path(load_metta(Self),Filename),!,loonit_report. +load_metta(Self,RelFilename):- + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + track_load_into_file(Filename, + include_metta(Self,RelFilename)). + +include_metta(Self,Filename):- + (\+ atom(Filename); \+ exists_file(Filename)),!, + must_det_ll(with_wild_path(include_metta(Self),Filename)),!. + +include_metta(Self,RelFilename):- + must_det_ll(( + atom(RelFilename), + exists_file(RelFilename),!, + absolute_file_name(RelFilename,Filename), + must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), + ((directory_file_path(Directory, _, Filename), + assert(metta_file(Self,Filename,Directory)), + with_cwd(Directory, + must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). + +load_metta_file_stream(Filename,Self,In):- + once((is_file_stream_and_size(In, Size) , Size>102400) -> P2 = read_sform2 ; P2 = read_metta2), + with_option(loading_file,Filename, + %current_exec_file(Filename), + ((must_det_ll(( + set_exec_num(Filename,1), + load_answer_file(Filename), + set_exec_num(Filename,0))), + load_metta_file_stream_fast(Size,P2,Filename,Self,In)))). + + + +accept_line(_Self,end_of_file):-!. +accept_line(Self,I):- normalize_space(string(Str),I),!,accept_line2(Self,Str),!. + +accept_line2(_Self,S):- string_concat(";",_,S),!,writeln(S). +accept_line2(Self,S):- string_concat('(',RS,S),string_concat(M,')',RS),!, + atomic_list_concat([F|LL],' ',M),PL =..[F,Self|LL],assert(PL),!,flag(next_assert,X,X+1), + if_t((0 is X mod 10_000_000),(writeln(X=PL),statistics)). +accept_line2(Self,S):- fbug(accept_line2(Self,S)),!. + +load_metta_file_stream_fast(_Size,_P2,Filename,Self,S):- atomic_list_concat([_,_,_|_],'.',Filename), + \+ option_value(html,true), + atomic(S),is_stream(S),stream_property(S,input),!, + repeat, + read_line_to_string(S,I), + accept_line(Self,I), + I==end_of_file,!. + +load_metta_file_stream_fast(_Size,P2,Filename,Self,In):- + repeat, + current_read_mode(file,Mode), + call(P2, In,Expr), %write_src(read_metta=Expr),nl, + once((((do_metta(file(Filename),Mode,Self,Expr,_O)))->true; pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), + flush_output, + at_end_of_stream(In),!. + +clear_spaces:- clear_space(_). +clear_space(S):- + %retractall(metta_defn(_,S,_,_)), + nop(retractall(metta_type(S,_,_))), + retractall(asserted_metta_atom(S,_)). + +dcall(G):- call(G). + +lsm:- lsm(_). +lsm(S):- + listing(metta_file(S,_,_)), + %listing(mdyn_type(S,_,_,_)), + forall(mdyn_type(S,_,_,Src),color_g_mesg('#22a5ff',write_f_src(Src))), + nl,nl,nl, + forall(mdyn_defn(S,_,_,Src),color_g_mesg('#00ffa5',write_f_src(Src))), + %listing(mdyn_defn(S,_,_,_)), + !. + +write_f_src(H,B):- H=@=B,!,write_f_src(H). +write_f_src(H,B):- write_f_src(['=',H,B]). + +hb_f(HB,ST):- sub_term(ST,HB),(atom(ST),ST\==(=),ST\==(:)),!. +write_f_src(HB):- + hb_f(HB,ST), + option_else(current_def,CST,[]),!, + (CST == ST -> true ; (nl,nl,nl,set_option_value(current_def,ST))), + write_src(HB). + + + +debug_only(G):- notrace(ignore(catch_warn(G))). +debug_only(_What,G):- ignore((fail,notrace(catch_warn(G)))). + + +'True':- true. +'False':- fail. + + +'metta_learner::vspace-main':- repl. + +into_underscores(D,U):- atom(D),!,atomic_list_concat(L,'-',D),atomic_list_concat(L,'_',U). +into_underscores(D,U):- descend_and_transform(into_underscores,D,U),!. + +into_hyphens(D,U):- atom(D),!,atomic_list_concat(L,'_',D),atomic_list_concat(L,'-',U). +into_hyphens(D,U):- descend_and_transform(into_hyphens,D,U),!. + +descend_and_transform(P2, Input, Transformed) :- + ( var(Input) + -> Transformed = Input % Keep variables as they are + ; compound(Input) + -> (compound_name_arguments(Input, Functor, Args), + maplist(descend_and_transform(P2), Args, TransformedArgs), + compound_name_arguments(Transformed, Functor, TransformedArgs)) + ; (atom(Input),call(P2,Input,Transformed)) + -> true % Transform atoms using xform_atom/2 + ; Transformed = Input % Keep other non-compound terms as they are + ). + +/* +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. + +fn_append(List,X,Call):- + fn_append1(List,X,ListX), + into_fp(ListX,Call). + + + + + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + +is_metta_data_functor(Eq,Other,H):- + metta_type(Other,H,_), + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_). +*/ +is_function(F):- atom(F). + +is_False(X):- X\=='True', (is_False1(X)-> true ; (eval_H(X,Y),is_False1(Y))). +is_False1(Y):- (Y==0;Y==[];Y=='False'). + +is_conz(Self):- compound(Self), Self=[_|_]. + +%dont_x(eval_H(Depth,Self,metta_if(A=1,atom_concat(metta_,_,F). +needs_expanded(eval_H(Term,_),Expand):- !,sub_term(Expand,Term),compound(Expand),Expand\=@=Term, + compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). +needs_expanded([A|B],Expand):- sub_term(Expand,[A|B]), compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). + +fn_append1(eval_H(Term,X),X,eval_H(Term,X)):-!. +fn_append1(Term,X,eval_H(Term,X)). + + +% Check if parentheses are balanced in a list of characters +balanced_parentheses(Chars) :- balanced_parentheses(Chars, 0). +balanced_parentheses([], 0). +balanced_parentheses(['('|T], N) :- N1 is N + 1, balanced_parentheses(T, N1). +balanced_parentheses([')'|T], N) :- N > 0, N1 is N - 1, balanced_parentheses(T, N1). +balanced_parentheses([H|T], N) :- H \= '(', H \= ')', balanced_parentheses(T, N). +% Recursive function to read lines until parentheses are balanced. +repl_read(NewAccumulated, Expr):- + atom_concat(Atom, '.', NewAccumulated), + catch_err((read_term_from_atom(Atom, Term, []), Expr=call(Term)), E, + (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. + + +%repl_read(Str, Expr):- ((clause(t_l:s_reader_info(Expr),_,Ref),erase(Ref))). +repl_read("!", '!'):-!. +repl_read("+", '+'):-!. +repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. + +repl_read(Str, Expr):- atom_concat('@',_,Str),!,atom_string(Expr,Str). +repl_read(NewAccumulated, Expr):- + normalize_space(string(Renew),NewAccumulated), Renew \== NewAccumulated, !, + repl_read(Renew, Expr). +%repl_read(NewAccumulated,exec(Expr)):- string_concat("!",Renew,NewAccumulated), !, repl_read(Renew, Expr). +repl_read(NewAccumulated, Expr):- string_chars(NewAccumulated, Chars), + balanced_parentheses(Chars), length(Chars, Len), Len > 0, + parse_sexpr_metta(NewAccumulated, Expr), !, + normalize_space(string(Renew),NewAccumulated), + add_history_string(Renew). +repl_read(Accumulated, Expr) :- read_line_to_string(current_input, Line), repl_read(Accumulated, Line, Expr). + +repl_read(_, end_of_file, end_of_file):- throw(end_of_input). + +repl_read(Accumulated, "", Expr):- !, repl_read(Accumulated, Expr). +repl_read(_Accumulated, Line, Expr):- Line == end_of_file, !, Expr = Line. +repl_read(Accumulated, Line, Expr) :- atomics_to_string([Accumulated," ",Line], NewAccumulated), !, + repl_read(NewAccumulated, Expr). + +repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +repl_read(Expr) :- repeat, + remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), + repl_read(Str, Expr), + % once(((atom(Expr1),atom_concat('@',_,Expr1), \+ atom_contains(Expr1,"="), repl_read(Expr2)) -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), + % this cutrs the repeat/0 + ((peek_pending_codes(_,Peek),Peek==[])->!;true). + +add_history_string(Str):- notrace(ignore(add_history01(Str))),!. + +add_history_src(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). + +add_history_pl(Exec):- var(Exec), !. +add_history_pl(eval(_,catch_red(PL),_)):- !,add_history_pl(PL). +add_history_pl(show_failure(PL)):-!,add_history_pl(PL). +add_history_pl(as_tf(PL,_OUT)):-!,add_history_pl(PL). +add_history_pl(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). + + +%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). +read_metta(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). +read_metta(I,O):- string(I),normalize_space(string(M),I),!,parse_sexpr_metta1(M,O),!. +read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta(In,Expr):- read_metta1(In,Expr). + +read_metta1(In,Expr):- is_file_stream_and_size(In, Size) , Size>10240,!,read_sform1([],In,Expr). +read_metta1(In,Expr):- read_metta2(In,Expr). + +read_metta2(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). +read_metta2(In,Expr):- peek_char(In,Char), read_metta2(In,Char,Expr). +read_metta2(In,Char,Expr):- char_type(Char,space),get_char(In,Char),put(Char),!,read_metta2(In,Expr). +read_metta2(In,'!',Expr):- get_char(In,_), !, read_metta2(In,Read1),!,Expr=exec(Read1). +read_metta2(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),Expr='$COMMENT'(Str,0,0))). +% write_comment(Str),!,read_metta2(In,Expr))),!. +% read_metta2(In,_,Expr):- maybe_read_pl(In,Expr),!. +read_metta2(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). + + +% Predicate to check if a stream is a file stream and get its size. +is_file_stream_and_size(Stream, Size) :- + % Check if the stream is associated with a file. + stream_property(Stream, file_name(FileName)), + % Check if the file is accessible and get its size. + exists_file(FileName), + size_file(FileName, Size). + + +maybe_read_pl(In,Expr):- + peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), + notrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, + read_term(In, Term, [])))). +peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. +peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. + + + + +%read_line_to_sexpr(Stream,UnTyped), +read_sform(Str,F):- string(Str),open_string(Str,S),!,read_sform(S,F). +read_sform(S,F):- + read_sform1([],S,F1), + ( F1\=='!' -> F=F1 ; + (read_sform1([],S,F2), F = exec(F2))). + + +read_sform2(S,F1):- !, read_metta2(S,F1). +read_sform2(S,F1):- read_sform1([],S,F1). + +read_sform1(_,_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). +read_sform1( AltEnd,Str,F):- string(Str),open_string(Str,S),!,read_sform1( AltEnd,S,F). +read_sform1(_AltEnd,S,F):- at_end_of_stream(S),!,F=end_of_file. +read_sform1( AltEnd,S,M):- get_char(S,C),read_sform3(s, AltEnd,C,S,F), untyped_to_metta(F,M). +%read_sform1( AltEnd,S,F):- profile(parse_sexpr_metta(S,F)). + +read_sform3(_AoS,_AltEnd,C,_,F):- C == end_of_file,!,F=end_of_file. +read_sform3( s, AltEnd,C,S,F):- char_type(C,space),!,read_sform1( AltEnd,S,F). +%read_sform3(AoS,_AltEnd,';',S,'$COMMENT'(F,0,0)):- !, read_line_to_string(S,F). +read_sform3( s, AltEnd,';',S,F):- read_line_to_string(S,_),!,read_sform1( AltEnd,S,F). +read_sform3( s, AltEnd,'!',S,exec(F)):- !,read_sform1( AltEnd,S,F). + +read_sform3(_AoS,_AltEnd,'"',S,Text):- !,must_det_ll(atom_until(S,[],'"',Text)). +read_sform3(_AoS,_AltEnd,'`',S,Text):- !,atom_until(S,[],'`',Text). +read_sform3(_AoS,_AltEnd,'\'',S,Text):- !,atom_until(S,[],'\'',Text). +read_sform3(_AoS,_AltEnd,',',_,','):- !. +read_sform3( s , AltEnd,C,S,F):- read_sform4( AltEnd,C,S,F),!. +read_sform3(_AoS, AltEnd,P,S,Sym):- peek_char(S,Peek),!,read_symbol_or_number( AltEnd,Peek,S,[P],Expr),into_symbol_or_number(Expr,Sym). + +into_symbol_or_number(Expr,Sym):- atom_number(Expr,Sym),!. +into_symbol_or_number(Sym,Sym). + +read_sform4(_AltEnd,B,S,Out):- read_sform5(s,B,S,List,E), c_list(E,List,Out). +c_list(')',List,List). c_list('}',List,['{...}',List]). c_list(']',List,['[...]',List]). + + +read_sform5(AoS,'(',S,List,')'):- !,collect_list_until(AoS,S,')',List),!. +read_sform5(AoS,'{',S,List,'}'):- !,collect_list_until(AoS,S,'}',List),!. +read_sform5(AoS,'[',S,List,']'):- !,collect_list_until(AoS,S,']',List),!. + + +read_symbol_or_number(_AltEnd,Peek,_S,SoFar,Expr):- char_type(Peek,space),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). +read_symbol_or_number(AltEnd,B,S,SoFar,Expr):- read_sform5(AltEnd,B,S,List,E),flatten([List,E],F), append(SoFar,F,NSoFar), + peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). +read_symbol_or_number( AltEnd,Peek,_S,SoFar,Expr):- member(Peek,AltEnd),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). +read_symbol_or_number( AltEnd,_Peek,S,SoFar,Expr):- get_char(S,C),append(SoFar,[C],NSoFar), + peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). + +atom_until(S,SoFar,End,Text):- get_char(S,C),atom_until(S,SoFar,C,End,Text). +atom_until(_,SoFar,C,End,Expr):- C ==End,!,must_det_ll((atomic_list_concat(SoFar,Expr))). +atom_until(S,SoFar,'\\',End,Expr):-get_char(S,C),!,atom_until2(S,SoFar,C,End,Expr). +atom_until(S,SoFar,C,End,Expr):- atom_until2(S,SoFar,C,End,Expr). +atom_until2(S,SoFar,C,End,Expr):- append(SoFar,[C],NSoFar),get_char(S,NC), + atom_until(S,NSoFar,NC,End,Expr). + +collect_list_until(AoS,S,End,List):- get_char(S,C), cont_list(AoS,C,End,S,List). +cont_list(_AoS,End,End,_,[]):- !. +cont_list( AoS,C,End,S,[F|List]):- read_sform3(AoS,[End],C,S,F),!,collect_list_until(AoS,S,End,List). + + + +in2_stream(N1,S1):- integer(N1),!,stream_property(S1,file_no(N1)),!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,alias(N1)),!. +in2_stream(N1,S1):- is_stream(N1),S1=N1,!. +in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. +is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. + + + +parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. +parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + +parse_sexpr_metta1(M,exec(O)):- string_concat('!',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(M,(O)):- string_concat('+',I,M),!,parse_sexpr_metta1(I,O). +parse_sexpr_metta1(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). + + +write_comment(_):- silent_loading,!. +write_comment(Cmt):- connlf,format(';;~w~n',[Cmt]). +do_metta_cmt(_,'$COMMENT'(Cmt,_,_)):- write_comment(Cmt),!. +do_metta_cmt(_,'$STRING'(Cmt)):- write_comment(Cmt),!. +do_metta_cmt(Self,[Cmt]):- !, do_metta_cmt(Self, Cmt),!. + + +mlog_sym('@'). + +%untyped_to_metta(I,exec(O)):- compound(I),I=exec(M),!,untyped_to_metta(M,O). +untyped_to_metta(I,O):- + must_det_ll(( + trly(mfix_vars1,I,M), + trly(cons_to_c,M,OM), + trly(cons_to_l,OM,O))). + + +trly(P2,A,B):- once(call(P2,A,M)),A\=@=M,!,trly(P2,M,B). +trly(_,A,A). + +mfix_vars1(I,O):- var(I),!,I=O. +mfix_vars1('$t','$VAR'('T')):-!. +mfix_vars1('$T','$VAR'('T')):-!. +%mfix_vars1(I,O):- I=='T',!,O='True'. +%mfix_vars1(I,O):- I=='F',!,O='False'. +%mfix_vars1(I,O):- is_i_nil(I),!,O=[]. +mfix_vars1(I,O):- I=='true',!,O='True'. +mfix_vars1(I,O):- I=='false',!,O='False'. +mfix_vars1('$STRING'(I),O):- option_value(strings,true),!, mfix_vars1(I,O). +mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),atom_chars(O,M),!. +%mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),name(O,M),!. +mfix_vars1([H|T],O):- H=='[', is_list(T), last(T,L),L==']',append(List,[L],T), !, O = ['[...]',List]. +mfix_vars1([H|T],O):- H=='{', is_list(T), last(T,L),L=='}',append(List,[L],T), !, O = ['{...}',List]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),O):- is_list(List),!, O = ['[...]',List]. +mfix_vars1(I,O):- I = ['[', X, ']'], nonvar(X), !, O = ['[...]',X]. +mfix_vars1(I,O):- I = ['{', X, '}'], nonvar(X), !, O = ['{...}',X]. +mfix_vars1('$OBJ'(claz_bracket_vector,List),Res):- is_list(List),!, append(['['|List],[']'],Res),!. +mfix_vars1(I,O):- I==[Quote, S], Quote==quote,S==s,!, O=is. +mfix_vars1([K,H|T],Cmpd):- atom(K),mlog_sym(K),is_list(T),mfix_vars1([H|T],[HH|TT]),atom(HH),is_list(TT),!, + compound_name_arguments(Cmpd,HH,TT). +%mfix_vars1([H|T],[HH|TT]):- !, mfix_vars1(H,HH),mfix_vars1(T,TT). +mfix_vars1(List,ListO):- is_list(List),!,maplist(mfix_vars1,List,ListO). +mfix_vars1(I,O):- string(I),option_value('string-are-atoms',true),!,atom_string(O,I). + +mfix_vars1(I,O):- compound(I),!,compound_name_arguments(I,F,II),F\=='$VAR',maplist(mfix_vars1,II,OO),!,compound_name_arguments(O,F,OO). +mfix_vars1(I,O):- \+ atom(I),!,I=O. +mfix_vars1(I,'$VAR'(O)):- atom_concat('$',N,I),dvar_name(N,O),!. +mfix_vars1(I,I). + +no_cons_reduce. + +dvar_name(t,'T'):- !. +dvar_name(N,O):- atom(N),atom_number(N,Num),atom_concat('Num',Num,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- number(N),atom_concat('Num',N,M),!,svar_fixvarname(M,O). +dvar_name(N,O):- \+ atom(N),!,format(atom(A),'~w',[N]),dvar_name(A,O). +dvar_name('','__'):-!. % "$" +dvar_name('_','_'):-!. % "$_" +dvar_name(N,O):- svar_fixvarname(N,O),!. +dvar_name(N,O):- must_det_ll((atom_chars(N,Lst),maplist(c2vn,Lst,NList),atomic_list_concat(NList,S),svar_fixvarname(S,O))),!. +c2vn(A,A):- char_type(A,prolog_identifier_continue),!. +c2vn(A,A):- char_type(A,prolog_var_start),!. +c2vn(A,AA):- char_code(A,C),atomic_list_concat(['_C',C,'_'],AA). + +cons_to_l(I,I):- no_cons_reduce,!. +cons_to_l(I,O):- var(I),!,O=I. +cons_to_l(I,O):- is_i_nil(I),!,O=[]. +cons_to_l(I,O):- I=='nil',!,O=[]. +cons_to_l(C,O):- \+ compound(C),!,O=C. +cons_to_l([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_l(H,HH),!,cons_to_l(T,TT). +cons_to_l(List,ListO):- is_list(List),!,maplist(cons_to_l,List,ListO). +cons_to_l(I,I). + +cons_to_c(I,I):- no_cons_reduce,!. +cons_to_c(I,O):- var(I),!,O=I. +cons_to_c(I,O):- is_i_nil(I),!,O=[]. +cons_to_c(I,O):- I=='nil',!,O=[]. +cons_to_c(C,O):- \+ compound(C),!,O=C. +cons_to_c([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_c(H,HH),!,cons_to_c(T,TT). +cons_to_c(I,O):- \+ is_list(I), compound_name_arguments(I,F,II),maplist(cons_to_c,II,OO),!,compound_name_arguments(O,F,OO). +cons_to_c(I,I). + + + +t_is_ttable(T):- var(T),!. +t_is_ttable(T):- is_i_nil(T),!. +t_is_ttable(T):- is_ftVar(T),!. +t_is_ttable([F|Args]):- F=='Cons',!,is_list(Args). +t_is_ttable([_|Args]):- !, \+ is_list(Args). +t_is_ttable(_). + +is_cons_f(Cons):- is_cf_nil(Cons,_). +is_cf_nil('Cons','NNNil'). +%is_cf_nil('::','nil'). + +is_i_nil(I):- + is_cf_nil('Cons',Nil), I == Nil. + +subst_vars(TermWDV, NewTerm):- + subst_vars(TermWDV, NewTerm, NamedVarsList), + maybe_set_var_names(NamedVarsList). + +subst_vars(TermWDV, NewTerm, NamedVarsList) :- + subst_vars(TermWDV, NewTerm, [], NamedVarsList). + +subst_vars(Term, Term, NamedVarsList, NamedVarsList) :- var(Term), !. +subst_vars([], [], NamedVarsList, NamedVarsList):- !. +subst_vars([TermWDV|RestWDV], [Term|Rest], Acc, NamedVarsList) :- !, + subst_vars(TermWDV, Term, Acc, IntermediateNamedVarsList), + subst_vars(RestWDV, Rest, IntermediateNamedVarsList, NamedVarsList). +subst_vars('$VAR'('_'), _, NamedVarsList, NamedVarsList) :- !. +subst_vars('$VAR'(VName), Var, Acc, NamedVarsList) :- nonvar(VName), svar_fixvarname(VName,Name), !, + (memberchk(Name=Var, Acc) -> NamedVarsList = Acc ; ( !, Var = _, NamedVarsList = [Name=Var|Acc])). +subst_vars(Term, Var, Acc, NamedVarsList) :- atom(Term),atom_concat('$',DName,Term), + dvar_name(DName,Name),!,subst_vars('$VAR'(Name), Var, Acc, NamedVarsList). + +subst_vars(TermWDV, NewTerm, Acc, NamedVarsList) :- + compound(TermWDV), !, + compound_name_arguments(TermWDV, Functor, ArgsWDV), + subst_vars(ArgsWDV, Args, Acc, NamedVarsList), + compound_name_arguments(NewTerm, Functor, Args). +subst_vars(Term, Term, NamedVarsList, NamedVarsList). + + + +:- nb_setval(variable_names,[]). + + +assert_preds(_Self,_Load,_Preds):- \+ preview_compiler,!. +assert_preds(_Self,Load,Preds):- + expand_to_hb(Preds,H,_B),functor(H,F,A), + color_g_mesg('#005288',( + ignore(( + \+ predicate_property(H,defined), + if_t(use_metta_compiler,catch_i(dynamic(F,A))), + format(' :- ~q.~n',[dynamic(F/A)]), + if_t(option_value('tabling',true), format(' :- ~q.~n',[table(F/A)])))), + if_t((preview_compiler), + format('~N~n ~@',[portray_clause(Preds)])), + if_t(use_metta_compiler,if_t(\+ predicate_property(H,static),add_assertion(Preds))))), + nop(metta_anew1(Load,Preds)). + + +%load_hook(_Load,_Hooked):- !. +load_hook(Load,Hooked):- ignore(( \+ ((forall(load_hook0(Load,Hooked),true))))),!. + +load_hook0(_,_):- \+ current_prolog_flag(metta_interp,ready),!. +load_hook0(_,_):- \+ preview_compiler,!. +load_hook0(Load,metta_defn(=,Self,H,B)):- + functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +/* +load_hook0(Load,get_metta_atom(Eq,Self,H)):- B = 'True', + H\=[':'|_], functs_to_preds([=,H,B],Preds), + assert_preds(Self,Load,Preds). +*/ + +use_metta_compiler:- notrace(option_value('compile','full')), !. +preview_compiler:- \+ option_value('compile',false), !. +%preview_compiler:- use_metta_compiler,!. + + +op_decl('pragma!', [ 'Atom', 'Atom'], 'EmptyType'). + +op_decl('match', [ 'Space', 'Atom', 'Atom'], '%Undefined%'). +op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). +op_decl('get-atoms', [ 'Space' ], 'Atom'). + +op_decl('get-state', [[ 'MonadicState', Type]],Type). +op_decl('change-state!', [[ 'MonadicState',Type],Type],'EmptyType'). +op_decl('new-state', [Type], ['MonadicState',Type ]). + +op_decl('car-atom', [ 'Expression' ], 'Atom'). +op_decl('cdr-atom', [ 'Expression' ], 'Expression'). + +op_decl(let, [ 'Atom', '%Undefined%', 'Atom' ], 'Atom'). +op_decl('let*', [ 'Expression', 'Atom' ], 'Atom'). + +op_decl(and, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(or, [ 'Bool', 'Bool' ], 'Bool'). +op_decl(case, [ 'Expression', 'Atom' ], 'Atom'). +/* +op_decl(apply, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl(chain, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). +op_decl('filter-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl('foldl-atom', [ 'Expression', 'Atom', 'Variable', 'Variable', 'Atom' ], 'Atom'). +op_decl('map-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). +op_decl(quote, [ 'Atom' ], 'Atom'). +op_decl('if-decons', [ 'Atom', 'Variable', 'Variable', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-empty', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-error', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-non-empty-expression', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl('if-not-reducible', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). +op_decl(return, [ 'Atom' ], 'ReturnType'). +op_decl('return-on-error', [ 'Atom', 'Atom'], 'Atom'). +op_decl(unquote, [ '%Undefined%'], '%Undefined%'). +op_decl(cons, [ 'Atom', 'Atom' ], 'Atom'). +op_decl(decons, [ 'Atom' ], 'Atom'). +op_decl(empty, [], '%Undefined%'). +op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). +op_decl(function, [ 'Atom' ], 'Atom'). +op_decl(id, [ 'Atom' ], 'Atom'). +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). +*/ +op_decl(eval, [ 'Atom' ], 'Atom'). +op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). +op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). +op_decl('%', [ 'Number', 'Number' ], 'Number'). +op_decl('*', [ 'Number', 'Number' ], 'Number'). +op_decl('-', [ 'Number', 'Number' ], 'Number'). +op_decl('+', [ 'Number', 'Number' ], 'Number'). +op_decl(combine, [ X, X], X). + +op_decl('bind!', ['Symbol','%Undefined%'], 'EmptyType'). +op_decl('import!', ['Space','Atom'], 'EmptyType'). +op_decl('get-type', ['Atom'], 'Type'). + +type_decl('Any'). +type_decl('Atom'). +type_decl('Bool'). +type_decl('ErrorType'). +type_decl('Expression'). +type_decl('Number'). +type_decl('ReturnType'). +type_decl('Space'). +type_decl('Symbol'). +type_decl('MemoizedState'). +type_decl('Type'). +type_decl('%Undefined%'). +type_decl('Variable'). + +:- dynamic(get_metta_atom/2). +:- dynamic(asserted_metta_atom/2). +metta_atom_stdlib(_):-!,fail. +metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). +metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). + +%get_metta_atom(Eq,KB, [F|List]):- KB='&flybase',fb_pred(F, Len), length(List,Len),apply(F,List). + + +get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). + +get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred_nr(F, Len),current_predicate(F/Len), length([A|List],Len),apply(F,[A|List]). +get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). +get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). +get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). +get_metta_atom_from(KB,Atom):- if_or_else(asserted_metta_atom( KB,Atom),asserted_metta_atom_fallback( KB,Atom)). + +asserted_metta_atom_fallback( KB,Atom):- fail, is_list(KB),!, member(Atom,KB). +%asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) + +%metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. +metta_atom(KB,Atom):- get_metta_atom_from(KB,Atom). +metta_defn(KB,Head,Body):- metta_defn(_Eq,KB,Head,Body). +metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). +metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). +%typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). + + +%maybe_xform(metta_atom(KB,[F,A|List]),metta_atom(KB,F,A,List)):- is_list(List),!. +maybe_xform(metta_defn(Eq,KB,Head,Body),metta_atom(KB,[Eq,Head,Body])). +maybe_xform(metta_type(KB,Head,Body),metta_atom(KB,[':',Head,Body])). +maybe_xform(metta_atom(KB,HeadBody),asserted_metta_atom(KB,HeadBody)). +maybe_xform(_OBO,_XForm):- !, fail. + +metta_anew1(Load,_OBO):- var(Load),trace,!. +metta_anew1(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew1(Mode,OBO). +metta_anew1(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew1(Load,XForm). +metta_anew1(load,OBO):- OBO= metta_atom(Space,Atom),!,'add-atom'(Space, Atom). +metta_anew1(unload,OBO):- OBO= metta_atom(Space,Atom),!,'remove-atom'(Space, Atom). + +metta_anew1(load,OBO):- !, must_det_ll((load_hook(load,OBO), + subst_vars(OBO,Cl),show_failure(assertz_if_new(Cl)))). %to_metta(Cl). +metta_anew1(unload,OBO):- subst_vars(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + +metta_anew2(Load,_OBO):- var(Load),trace,!. +metta_anew2(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew2(Load,XForm). +metta_anew2(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew2(Mode,OBO). +metta_anew2(load,OBO):- must_det_ll((load_hook(load,OBO),subst_vars_not_last(OBO,Cl),assertz_if_new(Cl))). %to_metta(Cl). +metta_anew2(unload,OBO):- subst_vars_not_last(OBO,Cl),load_hook(unload,OBO), + expand_to_hb(Cl,Head,Body), + predicate_property(Head,number_of_clauses(_)), + ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). + + +metta_anew(Load,Src,OBO):- maybe_xform(OBO,XForm),!,metta_anew(Load,Src,XForm). +metta_anew(Ch, Src, OBO):- metta_interp_mode(Ch,Mode), !, metta_anew(Mode,Src,OBO). +metta_anew(Load,_Src,OBO):- silent_loading,!,metta_anew1(Load,OBO). +metta_anew(Load,Src,OBO):- format('~N'), color_g_mesg('#0f0f0f',(write(' ; Action: '),writeq(Load=OBO))), + color_g_mesg('#ffa500', write_src(Src)), + metta_anew1(Load,OBO),format('~n'). + +subst_vars_not_last(A,B):- + functor(A,_F,N),arg(N,A,E), + subst_vars(A,B), + nb_setarg(N,B,E),!. + +con_write(W):-check_silent_loading, write(W). +con_writeq(W):-check_silent_loading, writeq(W). +writeqln(Q):- check_silent_loading,write(' '),con_writeq(Q),connl. + +connlf:- check_silent_loading, format('~N'). +connl:- check_silent_loading,nl. +% check_silent_loading:- silent_loading,!,trace,break. +check_silent_loading. +silent_loading:- is_converting,!. +silent_loading:- option_value('html','True'), !,fail. +silent_loading:- option_value('trace-on-load','False'), !. + + + + +uncompound(OBO,Src):- \+ compound(OBO),!, Src = OBO. +uncompound('$VAR'(OBO),'$VAR'(OBO)):-!. +uncompound(IsList,Src):- is_list(IsList),!,maplist(uncompound,IsList,Src). +uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). +uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). + +assert_to_metta(_):- reached_file_max,!. +assert_to_metta(OBO):- + must_det_ll((OBO=..[Fn|DataLL], + maplist(better_arg,DataLL,DataL), + into_datum(Fn, DataL, Data), + functor(Data,Fn,A),decl_fb_pred(Fn,A), + real_assert(Data),!, + incr_file_count(_))). + +assert_to_metta(OBO):- + ignore(( A>=2,A<700, + OBO=..[Fn|Cols], + must_det_ll(( + make_assertion4(Fn,Cols,Data,OldData), + functor(Data,FF,AA), + decl_fb_pred(FF,AA), + ((fail,call(Data))->true;( + must_det_ll(( + real_assert(Data), + incr_file_count(_), + ignore((((should_show_data(X), + ignore((fail,OldData\==Data,write('; oldData '),write_src(OldData),format(' ; ~w ~n',[X]))), + write_src(Data),format(' ; ~w ~n',[X]))))), + ignore(( + fail, option_value(output_stream,OutputStream), + is_stream(OutputStream), + should_show_data(X1),X1<1000,must_det_ll((display(OutputStream,Data),writeln(OutputStream,'.'))))))))))))),!. + +assert_MeTTa(OBO):- !, assert_to_metta(OBO). +%assert_MeTTa(OBO):- !, assert_to_metta(OBO),!,heartbeat. +/* +assert_MeTTa(Data):- !, heartbeat, functor(Data,F,A), A>=2, + decl_fb_pred(F,A), + incr_file_count(_), + ignore((((should_show_data(X), + write(newData(X)),write(=),write_src(Data))))), + assert(Data),!. +*/ + + +%:- dynamic((metta_type/3,metta_defn/3,get_metta_atom/2)). + +into_space(Self,'&self',Self):-!. +into_space(_,Other,Other):-!. + + +into_space(Self,Myself,SelfO):- into_space(30,Self,Myself,SelfO). + +into_space(_Dpth,Self,Myself,Self):-Myself=='&self',!. +into_space(_Dpth,Self,None,Self):- 'None' == None,!. +into_space(Depth,Self,Other,Result):- eval_H(Depth,Self,Other,Result). +into_name(_,Other,Other). + +%eval_f_args(Depth,Self,F,ARGS,[F|EARGS]):- maplist(eval_H(Depth,Self),ARGS,EARGS). + + +combine_result(TF,R2,R2):- TF == [], !. +combine_result(TF,_,TF):-!. + + +do_metta1_e(_Self,_,exec(Exec)):- !,write_exec(Exec),!. +do_metta1_e(_Self,_,[=,A,B]):- !, with_concepts(false, + (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. +do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. + +write_exec(Exec):- notrace(write_exec0(Exec)). +%write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). +write_exec0(Exec):- + wots(S,write_src(exec(Exec))), + nb_setval(exec_src,Exec), + ignore((notrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). + + + +asserted_do_metta(Space,Ch,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta(Space,Mode,Src). + +asserted_do_metta(Space,Load,Src):- Load==exec,!,do_metta_exec(python,Space,Src,_Out). +asserted_do_metta(Space,Load,Src):- asserted_do_metta2(Space,Load,Src,Src). + +asserted_do_metta2(Space,Ch,Info,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta2(Space,Mode,Info,Src). +asserted_do_metta2(Self,Load,[TypeOp,Fn,Type], Src):- TypeOp = ':', \+ is_list(Type),!, + must_det_ll(( + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,Type]))))),!. + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len),LenM1 is Len - 1, last_element(TypeDecL,LE), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecL]))), + metta_anew1(Load,metta_arity(Self,Fn,LenM1)), + arg_types(TypeDecL,[],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)),!, + metta_anew1(Load,metta_last(Self,Fn,LE)))). + +asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL,RetType], Src):- TypeOp = ':',!, + must_det_ll(( + decl_length(TypeDecL,Len), + append(TypeDecL,[RetType],TypeDecLRet), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecLRet]))), + metta_anew1(Load,metta_arity(Self,Fn,Len)), + arg_types(TypeDecL,[RetType],EachArg), + metta_anew1(Load,metta_params(Self,Fn,EachArg)), + metta_anew1(Load,metta_return(Self,Fn,RetType)))),!. + +/*do_metta(File,Self,Load,PredDecl, Src):-fail, + metta_anew(Load,Src,metta_atom(Self,PredDecl)), + ignore((PredDecl=['=',Head,Body], metta_anew(Load,Src,metta_defn(Eq,Self,Head,Body)))), + ignore((Body == 'True',!,do_metta(File,Self,Load,Head))), + nop((fn_append(Head,X,Head), fn_append(PredDecl,X,Body), + metta_anew((Head:- Body)))),!.*/ + +asserted_do_metta2(Self,Load,[EQ,Head,Result], Src):- EQ=='=', !, + must_det_ll(( + discover_head(Self,Load,Head), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_defn(EQ,Self,Head,Result))), + discover_body(Self,Load,Result))). + +asserted_do_metta2(Self,Load,PredDecl, Src):- + ignore(discover_head(Self,Load,PredDecl)), + color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,PredDecl))). + + +always_exec(exec(W)):- !, is_list(W), always_exec(W). +always_exec(Comp):- compound(Comp),compound_name_arity(Comp,Name,N),atom_concat('eval',_,Name),Nm1 is N-1, arg(Nm1,Comp,TA),!,always_exec(TA). +always_exec(List):- \+ is_list(List),!,fail. +always_exec([Var|_]):- \+ atom(Var),!,fail. +always_exec(['extend-py!'|_]):- !, fail. +always_exec([H|_]):- atom_concat(_,'!',H),!. %pragma!/print!/transfer!/include! etc +always_exec(['assertEqualToResult'|_]):-!,fail. +always_exec(['assertEqual'|_]):-!,fail. +always_exec(_):-!,fail. % everything else + +if_t(A,B,C):- trace,if_t((A,B),C). + + +check_answers_for(TermV,Ans):- (string(TermV);var(Ans);var(TermV)),!,fail. +check_answers_for(TermV,_):- sformat(S,'~q',[TermV]),atom_contains(S,"[assert"),!,fail. +check_answers_for(_,Ans):- contains_var('BadType',Ans),!,fail. +check_answers_for(TermV,_):- inside_assert(TermV,BaseEval), always_exec(BaseEval),!,fail. + +%check_answers_for([TermV],Ans):- !, check_answers_for(TermV,Ans). +%check_answers_for(TermV,[Ans]):- !, check_answers_for(TermV,Ans). +check_answers_for(_,_). + +got_exec_result2(Val,Nth,Ans):- is_list(Ans), exclude(==(','),Ans,Ans2), Ans\==Ans2,!, + got_exec_result2(Val,Nth,Ans2). +got_exec_result2(Val,Nth,Ans):- + must_det_ll(( + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + if_t( ( \+ is_unit_test_exec(Exec)), + ((equal_enough(Val,Ans) + -> write_pass_fail_result_now(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result_now(TestName,exec,Exec,'FAIL',Ans,Val)))))). + +write_pass_fail_result_now(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + (PASS_FAIL=='PASS'->flag(loonit_success, X, X+1);flag(loonit_failure, X, X+1)), + (PASS_FAIL=='PASS'->Color=cyan;Color=red), + color_g_mesg(Color,write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val)),!,nl, + nl,writeln('--------------------------------------------------------------------------'),!. + +write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,write_mobj(exec,[(['assertEqualToResult',Exec,Ans])]), + nl,write_src('!'(['assertEqual',Val,Ans])), + write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val). + +is_unit_test_exec(Exec):- sformat(S,'~w',[Exec]),sub_atom(S,_,_,_,'assert'). +is_unit_test_exec(Exec):- sformat(S,'~q',[Exec]),sub_atom(S,_,_,_,"!',"). + +return_empty('Empty'). +return_empty(_,Empty):- return_empty(Empty). + +convert_tax(_How,Self,Tax,Expr,NewHow):- + metta_interp_mode(Ch,Mode), + string_concat(Ch,TaxM,Tax),!, + normalize_space(string(NewTax),TaxM), + convert_tax(Mode,Self,NewTax,Expr,NewHow). +convert_tax(How,_Self,Tax,Expr,How):- + %parse_sexpr_metta(Tax,Expr). + normalize_space(string(NewTax),Tax), + parse_sexpr_metta1(NewTax,Expr). + +:- if( \+ current_predicate(notrace/1) ). + notrace(G):- once(G). +:- endif. + +metta_interp_mode('+',load). +metta_interp_mode('-',unload). +metta_interp_mode('!',exec). +metta_interp_mode('?',call). +metta_interp_mode('^',load_like_file). + + +call_sexpr(How,Self,Tax,_S,Out):- + (atom(Tax);string(Tax)), + normalize_space(string(TaxM),Tax), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + show_call(do_metta(python,NewHow,Self,Expr,Out)). + + +do_metta(_File,_Load,_Self,In,Out):- var(In),!,In=Out. +do_metta(_From,_Mode,_Self,end_of_file,'Empty'):- !. %, halt(7), writeln('\n\n% To restart, use: ?- repl.'). +do_metta(_File,_Load,_Self,Cmt,Out):- Cmt==[],!, Out=[]. + +do_metta(From,Load,Self,'$COMMENT'(Expr,_,_),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,Load,Self,'$STRING'(Expr),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,[Expr],Out):- !, do_metta(From,comment(Load),Self,Expr,Out). +do_metta(From,comment(Load),Self,Cmt,Out):- write_comment(Cmt), !, + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog only: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))), + ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))),!. + +do_metta(From,How,Self,Src,Out):- string(Src),!, + normalize_space(string(TaxM),Src), + convert_tax(How,Self,TaxM,Expr,NewHow),!, + do_metta(From,NewHow,Self,Expr,Out). + +do_metta(From,_,Self,exec(Expr),Out):- !, do_metta(From,exec,Self,Expr,Out). +do_metta(From,_,Self, call(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,_,Self, ':-'(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). +do_metta(From,call,Self,TermV,FOut):- !, + call_for_term_variables(TermV,Term,NamedVarsList,X), must_be(nonvar,Term), + copy_term(NamedVarsList,Was), + Output = NamedVarsList, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). +do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). + +do_metta(file(Filename),exec,Self,TermV,Out):- + notrace(( + inc_exec_num(Filename), + must_det_ll(( + get_exec_num(Filename,Nth), + Nth>0)), + file_answers(Filename, Nth, Ans), + check_answers_for(TermV,Ans),!, + must_det_ll(( + color_g_mesg_ok('#ffa500', + (writeln(';; In file as: '), + color_g_mesg([bold,fg('#FFEE58')], write_src(exec(TermV))), + write(';; To unit test case:'))))),!, + do_metta_exec(file(Filename),Self,['assertEqualToResult',TermV,Ans],Out))). + +do_metta(From,exec,Self,TermV,Out):- !, do_metta_exec(From,Self,TermV,Out). + +do_metta_exec(From,Self,TermV,FOut):- + Output = X, + notrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)),!, + user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). + + +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + term_variables(TermV, AllVars), call_for_term_variables4v(TermV,AllVars,Term,NamedVarsList,X),!, + must_be(callable,Term). +call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- + get_term_variables(TermV, DCAllVars, Singletons, NonSingletons), + call_for_term_variables5(TermV, DCAllVars, Singletons, NonSingletons, Term,NamedVarsList,X),!, + must_be(callable,Term). + +into_metta_callable(_Self,TermV,Term,X,NamedVarsList,Was):- use_metta_compiler, !, + must_det_ll(((( + + % ignore(Res = '$VAR'('ExecRes')), + RealRes = Res, + compile_for_exec(Res,TermV,ExecGoal),!, + subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), + copy_term(NamedVarsList,Was), + term_variables(Term,Vars), + notrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), + %nl,writeq(Term),nl, + ((\+ \+ + ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), + %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(Term,NamedVarsList,Vars)), + nl)))), + nop(maplist(verbose_unify,Vars)), + %NamedVarsList=[_=RealRealRes|_], + var(RealRes), X = RealRes)))),!. + + +into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, + option_else('stack-max',StackMax,100), + CALL = eval_H(StackMax,Self,Term,X), + notrace(( must_det_ll(( + if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), + subst_vars(TermV,Term,NamedVarsList), + copy_term(NamedVarsList,Was) + %term_variables(Term,Vars), + %nl,writeq(Term),nl, + %skip((\+ \+ + %((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), %nb_current(variable_names,NamedVarsList), + %nl,print(subst_vars(TermV,Term,NamedVarsList,Vars)),nl)))), + %nop(maplist(verbose_unify,Vars)))))),!. + )))),!. + +eval_H(StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). +eval_H(Term,X):- eval_args(Term,X). +/* +eval_H(StackMax,Self,Term,X). + +eval_H(StackMax,Self,Term,X):- + Time = 90.0, + ((always_exec(Term)) -> + if_or_else(t1('=',_,StackMax,Self,Term,X), + (t2('=',_,StackMax,Self,Term,X))); + call_max_time(t1('=',_,StackMax,Self,Term,X), Time, + (t2('=',_,StackMax,Self,Term,X)))). + +eval_H(Term,X):- + current_self(Self), StackMax = 100, + if_or_else((t1('=',_,StackMax,Self,Term,X),X\==Term),(t2('=',_,StackMax,Self,Term,X),nop(X\==Term))). + + +t1('=',_,StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). +t2('=',_,StackMax,Self,Term,X):- fail, subst_args('=',_,StackMax,Self,Term,X). +*/ + +%eval_H(Term,X):- if_or_else((subst_args(Term,X),X\==Term),(eval_args(Term,Y),Y\==Term)). + +print_goals(TermV):- write_src(TermV). + + +if_or_else(Goal,Else):- call(Goal)*->true;call(Else). + +interacting:- tracing,!. +interacting:- current_prolog_flag(debug,true),!. +interacting:- option_value(interactive,true),!. +interacting:- option_value(prolog,true),!. + +% call_max_time(+Goal, +MaxTime, +Else) +call_max_time(Goal,_MaxTime, Else) :- interacting,!, if_or_else(Goal,Else). +call_max_time(Goal,_MaxTime, Else) :- !, if_or_else(Goal,Else). +call_max_time(Goal, MaxTime, Else) :- + catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). + + +catch_err(G,E,C):- catch(G,E,(notrace(if_t(atom(E),throw(E))),C)). + +%repl:- option_value('repl',prolog),!,prolog. +%:- ensure_loaded(metta_toplevel). + +%:- discontiguous do_metta_exec/3. + +%repl:- setup_call_cleanup(flag(repl_level,Was,Was+1),repl0, + % (flag(repl_level,_,Was),(Was==0 -> maybe_halt(7) ; true))). + +repl:- catch(repl2,end_of_input,true). + +repl1:- + with_option('doing_repl',true, + with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). +repl2:- + %notrace((current_input(In),nop(catch(load_history,_,true)))), + % ignore(install_readline(In)), + repeat, + set_prolog_flag(gc,false), + %with_option(not_a_reload,true,make), + ignore(catch(once(repl3),restart_reading,true)), + set_prolog_flag(gc,true),fail. +repl3:- + notrace(( flag(eval_num,_,0), + current_self(Self), + current_read_mode(repl,Mode), + %ignore(shell('stty sane ; stty echo')), + %current_input(In), + format(atom(P),'metta ~w ~w> ',[Self, Mode]))), + setup_call_cleanup( + notrace(prompt(Was,P)), + notrace((ttyflush,repl_read(Expr),ttyflush)), + notrace(prompt(_,Was))), + if_trace(repl,fbug(repl_read(Expr))), + %fbug(repl_read(Expr)), + notrace(if_t(Expr==end_of_file,throw(end_of_input))), + %ignore(shell('stty sane ; stty echo')), + notrace(ignore(check_has_directive(Expr))), + once(do_metta(repl_true,Mode,Self,Expr,_)). + +check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. +check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). +check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,notrace(throw(restart_reading)). +check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). +check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). +check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(repl_mode,ModeChar). +check_has_directive('@'):- show_options_values,nl,!,notrace(throw(restart_reading)). +check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),option_value(NEV,Foo),print(NEV=Foo),nl,!,notrace(throw(restart_reading)). +check_has_directive(_). +set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). +set_directive(N,V):- N==mode,!,set_directive(repl_mode,V). +set_directive(N,V):- show_call(set_option_value(N,V)),!,notrace(throw(restart_reading)). + +read_pending_white_codes(In):- + read_pending_codes(In,[10],[]),!. +read_pending_white_codes(_). + +call_for_term_variables4v(Term,[] ,as_tf(Term,TF),NamedVarsList,TF):- get_global_varnames(NamedVarsList),!. +call_for_term_variables4v(Term,[X] , Term, NamedVarsList,X):- get_global_varnames(NamedVarsList). + + +not_in_eq(List, Element) :- + member(V, List), V == Element. + +get_term_variables(Term, DontCaresN, CSingletonsN, CNonSingletonsN) :- + term_variables(Term, AllVars), + get_global_varnames(VNs), + writeqln(term_variables(Term, AllVars)=VNs), + term_singletons(Term, Singletons), + term_dont_cares(Term, DontCares), + include(not_in_eq(Singletons), AllVars, NonSingletons), + include(not_in_eq(DontCares), NonSingletons, CNonSingletons), + include(not_in_eq(DontCares), Singletons, CSingletons), + maplist(into_named_vars,[DontCares, CSingletons, CNonSingletons], + [DontCaresN, CSingletonsN, CNonSingletonsN]), + writeqln([DontCaresN, CSingletonsN, CNonSingletonsN]). + +term_dont_cares(Term, DontCares):- + term_variables(Term, AllVars), + get_global_varnames(VNs), + include(has_sub_var(AllVars),VNs,HVNs), + include(underscore_vars,HVNs,DontCareNs), + maplist(arg(2),DontCareNs,DontCares). + +into_named_vars(Vars,L):- is_list(Vars), !, maplist(name_for_var_vn,Vars,L). +into_named_vars(Vars,L):- term_variables(Vars,VVs),!,into_named_vars(VVs,L). + +has_sub_var(AllVars,_=V):- sub_var(V,AllVars). +underscore_vars(V):- var(V),!,name_for_var(V,N),!,underscore_vars(N). +underscore_vars(N=_):- !, atomic(N),!,underscore_vars(N). +underscore_vars(N):- atomic(N),!,atom_concat('_',_,N). + +get_global_varnames(VNs):- nb_current('variable_names',VNs),VNs\==[],!. +get_global_varnames(VNs):- prolog_load_context(variable_names,VNs),!. +maybe_set_var_names(List):- List==[],!. +maybe_set_var_names(List):- % fbug(maybe_set_var_names(List)), + is_list(List),!,nb_linkval(variable_names,List). +maybe_set_var_names(_). + +name_for_var_vn(V,N=V):- name_for_var(V,N). + +name_for_var(V,N):- var(V),!,get_global_varnames(VNs),member(N=VV,VNs),VV==V,!. +name_for_var(N=_,N):- !. +name_for_var(V,N):- term_to_atom(V,N),!. + + + %call_for_term_variables5(Term,[],as_tf(Term,TF),[],TF):- atom(Term),!. +call_for_term_variables5(Term,[],[],[],as_tf(Term,TF),[],TF):- ground(Term),!. +call_for_term_variables5(Term,DC,[],[],call_nth(Term,TF),DC,TF):- ground(Term),!. +call_for_term_variables5(Term,_,[],[_=Var],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,[_=Var],[],call_nth(Term,Count),['Count'=Count],Var). +call_for_term_variables5(Term,_,Vars,[_=Var],Term,Vars,Var). +call_for_term_variables5(Term,_,[_=Var],Vars,Term,Vars,Var). +call_for_term_variables5(Term,_,SVars,Vars,call_nth(Term,Count),[Vars,SVars],Count). + + + +is_interactive(From):- notrace(is_interactive0(From)). +is_interactive0(From):- From==false,!,fail. +is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). +is_interactive0(From):- From = repl_true,!. +is_interactive0(From):- From = true,!. + + +:- set_prolog_flag(history, 20). + +inside_assert(Var,Var):- \+ compound(Var),!. +inside_assert([H,IA,_],IA):- atom(H),atom_concat('assert',_,H),!. +inside_assert(Conz,Conz):- is_conz(Conz),!. +inside_assert(exec(I),O):- !, inside_assert(I,O). +inside_assert(Eval,O):- functor(Eval,eval_H,A), A1 is A-1, arg(A1,Eval,I),!, inside_assert(I,O). +inside_assert(eval_H(A,B,I,C),eval_H(A,B,O,C)):- !, inside_assert(I,O). +inside_assert(eval_H(I,C),eval_H(O,C)):- !, inside_assert(I,O). +inside_assert(call(I),O):- !, inside_assert(I,O). +inside_assert( ?-(I), O):- !, inside_assert(I,O). +inside_assert( :-(I), O):- !, inside_assert(I,O). +inside_assert(Var,Var). + +:- nb_setval(self_space, '&self'). +current_self(Self):- ((nb_current(self_space,Self),Self\==[])->true;Self='&self'). +:- nb_setval(repl_mode, '+'). +current_read_mode(repl,Mode):- ((nb_current(repl_mode,Mode),Mode\==[])->true;Mode='+'),!. +current_read_mode(file,Mode):- ((nb_current(file_mode,Mode),Mode\==[])->true;Mode='+'). + + + +eval(all(Form)):- nonvar(Form), !, forall(eval(Form,_),true). +eval(Form):- + current_self(Self), + do_metta(true,exec,Self,Form,_Out). + +eval(Self,Form):- + current_self(SelfS),SelfS==Self,!, + do_metta(true,exec,Self,Form,_Out). +eval(Form,Out):- + current_self(Self), + eval(Self,Form,Out). + + +eval(Self,Form,Out):- + do_metta(prolog,exec,Self,Form,Out). + +name_vars(X='$VAR'(X)). +interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + catch(interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut),'$aborted',fbug(aborted(From,TermV))). + +interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + notrace(( + Result = res(FOut), + inside_assert(Term,BaseEval), + option_else(answer,Leap,each), + Control = contrl(inf,Leap), + Skipping = _, + % Initialize Control as a compound term with 'each' as its argument. + %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), + (((From = file(_Filename), option_value('exec',skip), \+ always_exec(BaseEval))) + -> (GG = (skip(Term),deterministic(Complete)), + %Output = + %FOut = "Skipped", + Skipping = 1,!, + %color_g_mesg('#da70d6', (write('% SKIPPING: '), writeq(eval_H(100,Self,BaseEval,X)),writeln('.'))), + % color_g_mesg('#fa90f6', (writeln('; SKIPPING'), with_indents(true,write_src(exec(BaseEval))))), + % if_t(is_list(BaseEval),add_history_src(exec(TermV))), + true + ) + ; GG = %$ locally(set_prolog_flag(gc,false), + ( + (( (Term),deterministic(Complete), nb_setarg(1,Result,Output)))), + !, % metta_toplevel + flag(result_num,_,0), + PL=eval(Self,BaseEval,X), + ( % with_indents(true, + \+ \+ ( + maplist(name_vars,NamedVarsList), + name_vars('OUT'=X), + % add_history_src(exec(BaseEval)), + write_exec(TermV), + if_t(Skipping==1,writeln(' ; SKIPPING')), + if_t(TermV\=BaseEval,color_g_mesg('#fa90f6', (write('; '), with_indents(false,write_src(exec(BaseEval)))))), + if_t((is_interactive(From);Skipping==1), + ( + if_t( \+ option_value(doing_repl,true), + if_t( \+ option_value(repl,true), + if_t( option_value(prolog,true), add_history_pl(PL)))), + if_t(option_value(repl,true), add_history_src(exec(BaseEval))))), + + prolog_only((color_g_mesg('#da70d6', (write('% DEBUG: '), writeq(PL),writeln('.'))))), + true))))), + + (forall_interactive( + From, WasInteractive,Complete, %may_rtrace + (timed_call(GG,Seconds)), + ((Complete==true->!;true), + %repeat, + set_option_value(interactive,WasInteractive), + Control = contrl(Max,DoLeap), + nb_setarg(1,Result,Output), + read_pending_codes(user_input,_,[]), + flag(result_num,R,R+1), + flag(result_num,ResNum,ResNum), + if_t(ResNum=(format('~NDeterministic: ', []), !); %or Nondet + ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); + format('~NNDet Result(~w): ',[ResNum])))), + color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), + give_time('Execution',Seconds), + color_g_mesg(green, + ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))))), + ( + (Complete\==true, WasInteractive, DoLeap\==leap, ResNum + (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, + (C=='b' -> (once(repl),fail) ; + (C=='m' -> make ; + (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; + (C=='T' -> (set_debug(eval,true)); + (C==';' -> true ; + (C==esc('[A',[27,91,65]) -> nb_setarg(2, Control, leap) ; + (C=='L' -> nb_setarg(1, Control, ResNum) ; + (C=='l' -> nb_setarg(2, Control, leap) ; + (((C=='\n');(C=='\r')) -> (!,fail); + (!,fail)))))))))))); + (Complete\==true, \+ WasInteractive, Control = contrl(Max,leap)) -> true ; + (((Complete==true ->! ; true))))) + *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) + ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,true);true))), + ignore(Result = res(FOut)). + + + +mqd:- + forall(metta_atom(_KB,['query-info',E,T,Q]), + (writeln(E), + term_variables(T,TVs), + term_variables(Q,QVs), + intersection(TVs,QVs,_,_,SVs), + notrace(eval(['match','&flybase',Q,T],SVs)))). + + +get_single_char_key(O):- get_single_char(C),get_single_char_key(C,O). +get_single_char_key(27,esc(A,[27|O])):- !,read_pending_codes(user_input,O,[]),name(A,O). +get_single_char_key(C,A):- name(A,[C]). + +forall_interactive(file(_),false,Complete,Goal,After):- !, Goal, (Complete==true -> ( After,!) ; ( \+ After )). +forall_interactive(prolog,false,Complete,Goal,After):- !, Goal, (Complete == true -> ! ; true), quietly(After). +forall_interactive(From,WasInteractive,Complete,Goal,After):- + (is_interactive(From) -> WasInteractive = true ; WasInteractive = false),!, + Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). + +print_var(Name=Var) :- print_var(Name,Var). +print_var(Name,_Var) :- atom_concat('Num',Rest,Name),atom_number(Rest,_),!. +print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. + +% Entry point for the user to call with tracing enabled +toplevel_goal(Goal) :- + term_variables(Goal,Vars), + trace_goal(Vars, Goal, trace_off). + +% Entry point for the user to call with tracing enabled +trace_goal(Goal) :- + trace_goal(Goal, trace_on). + +% Handle tracing +trace_goal(Goal, Tracing) :- + (Tracing == trace_on -> writeln('Entering goal:'), writeln(Goal) ; true), + term_variables(Goal, Variables), + ( call(Goal) -> + (Tracing == trace_on -> writeln('Goal succeeded with:'), writeln(Variables) ; true), + interact(Variables, Goal, Tracing) + ; (Tracing == trace_on -> writeln('Goal failed.') ; true), + false + ). + +% Interaction with the user +interact(Variables, Goal, Tracing) :- + call(Goal),write('Solution: '), write_src(Variables), + write(' [;next]?'), + get_single_char(Code), + (command(Code, Command) -> + handle_command(Command, Variables, Goal, Tracing) + ; writeln('Unknown command.'), interact(Variables, Goal, Tracing) % handle unknown commands + ). + +install_readline(Input):- + add_history_string("!(pfb3)"), + add_history_string("!(load-flybase-full)"), + add_history_string("!(obo-alt-id $X BS:00063)"), + add_history_string("!(and (total-rows $T TR$) (unique-values $T2 $Col $TR))"), + ignore(editline:el_wrap), + ignore(editline:add_prolog_commands(Input)). + + + + +% Command descriptions +command(59, retry). % ';' to retry +command(115, skip). % 's' to skip to the next solution +command(108, leap). % 'l' to leap (end the debugging session) +command(103, goals). % 'g' to show current goals +command(102, fail). % 'f' to force fail +command(116, trace). % 't' to toggle tracing +command(117, up). % 'u' to continue without interruption +command(101, exit). % 'e' to exit the debugger +command(97, abort). % 'a' to abort +command(98, break). % 'b' to set a breakpoint +command(99, creep). % 'c' to proceed step by step +command(104, help). % 'h' for help +command(65, alternatives). % 'A' for alternatives +command(109, make). % 'm' for make (recompile) +command(67, compile). % 'C' for Compile (compile new executable) + +:- style_check(-singleton). + +% Command implementations +handle_command(make, Variables, Goal, Tracing) :- + writeln('Recompiling...'), + % Insert the logic to recompile the code. + % This might involve calling `make/0` or similar. + make, % This is assuming your Prolog environment has a `make` predicate. + fail. % interact(Variables, Goal, Tracing). + +handle_command(compile, Variables, Goal, Tracing) :- + writeln('Compiling new executable...'), + % Insert the logic to compile a new executable. + % This will depend on how you compile Prolog programs in your environment. + % For example, you might use `qsave_program/2` to create an executable. + % Pseudocode: compile_executable(ExecutableName) + fail. % interact(Variables, Goal, Tracing). +handle_command(alternatives, Variables, Goal, Tracing) :- + writeln('Showing alternatives...'), + % Here you would include the logic for displaying the alternatives. + % For example, showing other clauses that could be tried for the current goal. + writeln('Alternatives for current goal:'), + writeln(Goal), + % Pseudocode: find_alternatives(Goal, Alternatives) + % Pseudocode: print_alternatives(Alternatives) + fail. % interact(Variables, Goal, Tracing). +% Extend the command handling with the 'help' command implementation +handle_command(help, Variables, Goal, Tracing) :- + print_help, + fail. % interact(Variables, Goal, Tracing). +handle_command(abort, _, _, _) :- + writeln('Aborting...'), abort. +handle_command(break, Variables, Goal, Tracing) :- + writeln('Breakpoint set.'), % Here you should define what 'setting a breakpoint' means in your context + fail. % interact(Variables, Goal, Tracing). +handle_command(creep, Variables, Goal, Tracing) :- + writeln('Creeping...'), % Here you should define how to 'creep' (step by step execution) through the code + trace. % interact(Variables, Goal, Tracing). +handle_command(retry, Variables, Goal, Tracing) :- + writeln('Continuing...'),!. + %trace_goal(Goal, Tracing). +handle_command(skip, Variables, Goal, Tracing) :- + writeln('Skipping...'). +handle_command(leap, _, _, _) :- + writeln('Leaping...'), nontrace. % Cut to ensure we stop the debugger +handle_command(goals, Variables, Goal, Tracing) :- + writeln('Current goal:'), writeln(Goal), + writeln('Current variables:'), writeln(Variables), + bt,fail. % interact(Variables, Goal, Tracing). +handle_command(fail, _, _, _) :- + writeln('Forcing failure...'), fail. +handle_command(trace, Variables, Goal, Tracing) :- + (Tracing == trace_on -> + NewTracing = trace_off, writeln('Tracing disabled.') + ; NewTracing = trace_on, writeln('Tracing enabled.') + ), + interact(Variables, Goal, NewTracing). +handle_command(up, Variables, Goal, Tracing) :- + writeln('Continuing up...'), + repeat, + ( trace_goal(Goal, Tracing) -> true ; !, fail ). +handle_command(exit, _, _, _) :- + writeln('Exiting debugger...'), !. % Cut to ensure we exit the debugger + +:- style_check(+singleton). + + +% Help description +print_help :- + writeln('Debugger commands:'), + writeln('(;) next - Retry with next solution.'), + writeln('(g) goal - Show the current goal.'), + writeln('(u) up - Finish this goal without interruption.'), + writeln('(s) skip - Skip to the next solution.'), + writeln('(c) creep or - Proceed step by step.'), + writeln('(l) leap - Leap over (the debugging).'), + writeln('(f) fail - Force the current goal to fail.'), + writeln('(B) back - Go back to the previous step.'), + writeln('(t) trace - Toggle tracing on or off.'), + writeln('(e) exit - Exit the debugger.'), + writeln('(a) abort - Abort the current operation.'), + writeln('(b) break - Break to a new sub-REPL.'), + writeln('(h) help - Display this help message.'), + writeln('(A) alternatives - Show alternative solutions.'), + writeln('(m) make - Recompile/Update the current running code.'), + writeln('(C) compile - Compile a fresh executable (based on the running state).'), + writeln('(E) error msg - Show the latest error messages.'), + writeln('(r) retry - Retry the previous command.'), + writeln('(I) info - Show information about the current state.'), + !. + + + + +really_trace:- once(option_value('exec',rtrace);option_value('eval',rtrace);is_debugging((exec));is_debugging((eval))). +% !(pragma! exec rtrace) +may_rtrace(Goal):- really_trace,!, really_rtrace(Goal). +may_rtrace(Goal):- Goal*->true;( \+ tracing, trace,really_rtrace(Goal)). +really_rtrace(Goal):- use_metta_compiler,!,rtrace(call(Goal)). +really_rtrace(Goal):- with_debug((eval),with_debug((exec),Goal)). + +rtrace_on_existence_error(G):- !, catch_err(G,E, (fbug(E=G), \+ tracing, trace, rtrace(G))). +%rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). + +prolog_only(Goal):- !,Goal. +prolog_only(Goal):- if_trace(prolog,Goal). + +write_compiled_exec(Exec,Goal):- +% ignore(Res = '$VAR'('ExecRes')), + compile_for_exec(Res,Exec,Goal), + notrace((color_g_mesg('#114411',portray_clause(exec(Res):-Goal)))). + +verbose_unify(Term):- verbose_unify(trace,Term). +verbose_unify(What,Term):- term_variables(Term,Vars),maplist(verbose_unify0(What),Vars),!. +verbose_unify0(What,Var):- put_attr(Var,verbose_unify,What). +verbose_unify:attr_unify_hook(Attr, Value) :- + format('~N~q~n',[verbose_unify:attr_unify_hook(Attr, Value)]), + vu(Attr,Value). +vu(_Attr,Value):- is_ftVar(Value),!. +vu(fail,_Value):- !, fail. +vu(true,_Value):- !. +vu(trace,_Value):- trace. +:- nodebug(metta(eval)). +:- nodebug(metta(exec)). +% Measures the execution time of a Prolog goal and displays the duration in seconds, +% milliseconds, or microseconds, depending on the execution time. +% +% Args: +% - Goal: The Prolog goal to be executed and timed. +% +% The predicate uses the `statistics/2` predicate to measure the CPU time before +% and after executing the provided goal. It calculates the elapsed time in seconds +% and converts it to milliseconds and microseconds. The output is formatted to +% provide clear timing information: +% +% - If the execution takes more than 2 seconds, it displays the time in seconds. +% - If the execution takes between 1 millisecond and 2 seconds, it displays the time +% in milliseconds. +% - If the execution takes less than 1 millisecond, it displays the time in microseconds. +% +% Example usage: +% ?- time_eval(my_goal(X)). +% +% ?- time_eval(sleep(0.95)). +% +% Output examples: +% ; Evaluation took 2.34 seconds. +% ; Evaluation took 123.45 ms. +% ; Evaluation took 0.012 ms. (12.33 microseconds) +% +time_eval(Goal):- + time_eval('Evaluation',Goal). +time_eval(What,Goal) :- + timed_call(Goal,Seconds), + give_time(What,Seconds). + +give_time(What,Seconds):- + Milliseconds is Seconds * 1_000, + (Seconds > 2 + -> format('; ~w took ~2f seconds.~n', [What, Seconds]) + ; (Milliseconds >= 1 + -> format('; ~w took ~3f secs. (~2f milliseconds) ~n', [What, Seconds, Milliseconds]) + ;( Micro is Milliseconds * 1_000, + format('; ~w took ~6f secs. (~2f microseconds) ~n', [What, Seconds, Micro])))). + +timed_call(Goal,Seconds):- + statistics(cputime, Start), + call(Goal), + statistics(cputime, End), + Seconds is End - Start. + +%:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). + +:- abolish(fbug/1). +fbug(Info):- notrace(in_cmt(color_g_mesg('#2f2f2f',write_src(Info)))). +example0(_):- fail. +example1(a). example1(_):- fail. +example2(a). example2(b). example2(_):- fail. +example3(a). example3(b). example3(c). example3(_):- fail. +%eval_H(100,'&self',['change-state!','&var',[+,1,['get-state','&var']]],OUT) +%dcall(X):- (call(X),deterministic(YN)),trace,((YN==true)->!;true). +chkdet_call(XX):- !, call(XX). +chkdet_call0(XX):- !, call(XX). + +dcall0000000000(XX):- + USol = sol(dead), + copy_term(XX,X), + call_nth(USol,X,Nth,Det,Prev), + %fbug(call_nth(USol,X,Nth,Det,Prev)), + XX=Prev, + (Det==yes -> (!, (XX=Prev;XX=X)) ; + (((var(Nth) -> ( ! , Prev\==dead) ; + true), + (Nth==1 -> ! ; true)))). + +call_nth(USol,XX,Nth,Det,Prev):- + repeat, + ((call_nth(XX,Nth),deterministic(Det),arg(1,USol,Prev))*-> + ( nb_setarg(1,USol,XX)) + ; (!, arg(1,USol,Prev))). + +catch_red(Term):- catch_err(Term,E,pp_m(red,in(Term,E))). +%catch_red(Term):- call(Term). + +s2p(I,O):- sexpr_s2p(I,O),!. + +discover_head(Self,Load,Head):- + ignore(([Fn|PredDecl]=Head, + nop(( arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_head(Self,Fn,EachArg)))))). + +discover_body(Self,Load,Body):- + nop(( [Fn|PredDecl] = Body, arg_types(PredDecl,[],EachArg), + metta_anew1(Load,metta_body(Self,Fn,EachArg)))). + +decl_length(TypeDecL,Len):- is_list(TypeDecL),!,length(TypeDecL,Len). +decl_length(_TypeDecL,1). + +arg_types([['->'|L]],R,LR):-!, arg_types(L,R,LR). +arg_types(['->'|L],R,LR):-!, arg_types(L,R,LR). +arg_types(L,R,LR):- append(L,R,LR). + +%:- ensure_loaded('../../examples/factorial'). +%:- ensure_loaded('../../examples/fibonacci'). + +%:- abolish(system:notrace/1). +%system:notrace(G):- once(G). + +%print_preds_to_functs:-preds_to_functs_src(factorial_tail_basic) +ggtrace(G):- call(G). +ggtrace0(G):- ggtrace, + leash(-all), + visible(-all), + % debug, + %visible(+redo), + visible(+call), + visible(+exception), + maybe_leash(+exception), + setup_call_cleanup(trace,G,notrace). +:- dynamic(began_loon/1). +loon:- loon(typein). + + +catch_red_ignore(G):- catch_red(G)*->true;true. + +:- export(loon/1). +:- public(loon/1). + + +%loon(Why):- began_loon(Why),!,fbug(begun_loon(Why)). +loon(Why):- is_compiling,!,fbug(compiling_loon(Why)),!. +%loon( _Y):- current_prolog_flag(os_argv,ArgV),member('-s',ArgV),!. +% Why\==toplevel,Why\==default, Why\==program,! +loon(Why):- is_compiled, Why\==toplevel,!,fbug(compiled_loon(Why)),!. +loon(Why):- began_loon(_),!,fbug(skip_loon(Why)). +loon(Why):- fbug(began_loon(Why)), assert(began_loon(Why)), + do_loon. + +do_loon:- + ignore(( + \+ prolog_load_context(reloading,true), + maplist(catch_red_ignore,[ + + %if_t(is_compiled,ensure_metta_learner), + metta_final, + load_history, + update_changed_files, + run_cmd_args, + maybe_halt(7)]))),!. + + +need_interaction:- \+ option_value('had_interaction',true), + \+ is_converting, \+ is_compiling, \+ is_pyswip,!, + option_value('prolog',false), option_value('repl',false), \+ metta_file(_Self,_Filename,_Directory). + +pre_halt1:- is_compiling,!,fail. +pre_halt1:- loonit_report,fail. +pre_halt2:- is_compiling,!,fail. +pre_halt2:- option_value('prolog',true),!,set_option_value('prolog',started),call_cleanup(prolog,pre_halt2). +pre_halt2:- option_value('repl',true),!,set_option_value('repl',started),call_cleanup(repl,pre_halt2). +pre_halt2:- need_interaction, set_option_value('had_interaction',true),call_cleanup(repl,pre_halt2). + +%loon:- time(loon_metta('./examples/compat/test_scripts/*.metta')),fail. +%loon:- repl, (option_value('halt',false)->true;halt(7)). +%maybe_halt(Seven):- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),maybe_halt(Seven))). +%maybe_halt(Seven):- option_value('repl',true),!,halt(Seven). +maybe_halt(_):- once(pre_halt1), fail. +maybe_halt(Seven):- option_value('repl',false),!,halt(Seven). +maybe_halt(Seven):- option_value('halt',true),!,halt(Seven). +maybe_halt(_):- once(pre_halt2), fail. +maybe_halt(Seven):- fbug(maybe_halt(Seven)). + +:- initialization(nb_setval(cmt_override,lse('; ',' !(" ',' ") ')),restore). + + +%needs_repl:- \+ is_converting, \+ is_pyswip, \+ is_compiling, \+ has_file_arg. +% libswipl: ['./','-q',--home=/usr/local/lib/swipl] + +:- initialization(show_os_argv). + +:- initialization(loon(program),program). +:- initialization(loon(default)). + +ensure_mettalog_system:- + abolish(began_loon/1), + dynamic(began_loon/1), + system:use_module(library(quasi_quotations)), + system:use_module(library(hashtable)), + system:use_module(library(gensym)), + system:use_module(library(sort)), + system:use_module(library(writef)), + system:use_module(library(rbtrees)), + system:use_module(library(dicts)), + system:use_module(library(shell)), + system:use_module(library(edinburgh)), + % system:use_module(library(lists)), + system:use_module(library(statistics)), + system:use_module(library(nb_set)), + system:use_module(library(assoc)), + system:use_module(library(pairs)), + user:use_module(library(swi_ide)), + user:use_module(library(prolog_profile)), + %metta_python, + %ensure_loaded('./metta_vspace/pyswip/flybase_convert'), + %ensure_loaded('./metta_vspace/pyswip/flybase_main'), + ensure_loaded(library(metta_python)), + ensure_loaded(library(flybase_convert)), + ensure_loaded(library(flybase_main)), + autoload_all, + make, + autoload_all, + %pack_install(predicate_streams, [upgrade(true),global(true)]), + %pack_install(logicmoo_utils, [upgrade(true),global(true)]), + %pack_install(dictoo, [upgrade(true),global(true)]), + !. + +file_save_name(E,_):- \+ atom(E),!,fail. +file_save_name(E,Name):- file_base_name(E,BN),BN\==E,!,file_save_name(BN,Name). +file_save_name(E,E):- atom_concat('Sav.',_,E),!. +file_save_name(E,E):- atom_concat('Bin.',_,E),!. +before_underscore(E,N):-atomic_list_concat([N|_],'_',E),!. +save_name(Name):- current_prolog_flag(os_argv,ArgV),member(E,ArgV),file_save_name(E,Name),!. +next_save_name(Name):- save_name(E), + before_underscore(E,N), + atom_concat(N,'_',Stem), + gensym(Stem,Name), + \+ exists_file(Name), + Name\==E,!. +next_save_name(SavMeTTaLog):- option_value(exeout,SavMeTTaLog), + atomic(SavMeTTaLog),atom_length(SavMeTTaLog,Len),Len>1,!. +next_save_name('Sav.MeTTaLog'). +qcompile_mettalog:- + ensure_mettalog_system, + option_value(exeout,Named), + catch_err(qsave_program(Named, + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(true)]),E,writeln(E)), + halt(0). +qsave_program:- ensure_mettalog_system, next_save_name(Name), + catch_err(qsave_program(Name, + [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(false)]),E,writeln(E)), + !. + + + +:- initialization(update_changed_files,restore). + +:- ignore((( + \+ prolog_load_context(reloading,true), + initialization(loon(restore),restore), + metta_final +))). +:- set_prolog_flag(metta_interp,ready). diff --git a/metta_vspace/pyswip-want/metta_prelude.metta b/metta_vspace/pyswip-want/metta_prelude.metta new file mode 100755 index 00000000..ebeac455 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_prelude.metta @@ -0,0 +1,430 @@ + +(: unify (-> Atom Atom Atom Atom %Undefined%)) +(: if (-> Bool Atom Atom $t#330)) +(: quote (-> Atom Atom)) +(: Error (-> Atom Atom ErrorType)) +(: empty (-> %Undefined%)) +(: get-atoms (-> Space Atom)) +(: add-atom (-> Space Atom (->))) +(: remove-atom (-> Space Atom (->))) +(: add-atom (-> Space Atom (->))) + +;`$then`, `$else` should be of `Atom` type to avoid evaluation +; and infinite cycle in inference +(: if (-> Bool Atom Atom $t)) +(= (if True $then $else) $then) +(= (if False $then $else) $else) + +(: Error (-> Atom Atom ErrorType)) + +(= (if-non-empty-expression $atom $then $else) + (chain (eval (get-metatype $atom)) $type + (eval (if-equal $type Expression + (eval (if-equal $atom () $else $then)) + $else )))) + +(= (if-decons $atom $head $tail $then $else) + (eval (if-non-empty-expression $atom + (chain (decons $atom) $list + (match $list ($head $tail) $then $else) ) + $else ))) + +(= (if-empty $atom $then $else) + (eval (if-equal $atom Empty $then $else))) + +(= (if-error $atom $then $else) + (eval (if-decons $atom $head $_ + (eval (if-equal $head Error $then $else)) + $else ))) + +(= (return-on-error $atom $then) + (eval (if-empty $atom Empty + (eval (if-error $atom $atom + $then ))))) + +(= (car $atom) + (eval (if-decons $atom $head $_ + $head + (Error (car $atom) "car expects a non-empty expression as an argument") ))) + +(= (switch $atom $cases) + (chain (decons $cases) $list (eval (switch-internal $atom $list)))) + +(= (switch-internal $atom (($pattern $template) $tail)) + (match $atom $pattern $template (eval (switch $atom $tail)))) + +(= (subst $atom $var $templ) + (match $atom $var $templ + (Error (subst $atom $var $templ) + "subst expects a variable as a second argument") )) + +(= (reduce $atom $var $templ) + (chain (eval $atom) $res + (eval (if-error $res $res + (eval (if-empty $res + (eval (subst $atom $var $templ)) + (eval (reduce $res $var $templ)) )))))) + +(= (type-cast $atom $type $space) + (chain (eval (get-type $atom $space)) $actual-type + (eval (switch ($actual-type $type) + ( + ((%Undefined% $_) $atom) + (($_ %Undefined%) $atom) + (($type $_) $atom) + ($_ (Error $atom BadType)) ))))) + +(= (is-function $type) + (chain (eval (get-metatype $type)) $meta + (eval (switch ($type $meta) + ( + (($_ Expression) + (chain (eval (car $type)) $head + (match $head -> True False) )) + ($_ False) ))))) + +(= (interpret $atom $type $space) + (chain (eval (get-metatype $atom)) $meta + (eval (switch ($type $meta) + ( + ((Atom $_meta) $atom) + (($meta $meta) $atom) + (($_type Variable) $atom) + + (($_type Symbol) (eval (type-cast $atom $type $space))) + (($_type Grounded) (eval (type-cast $atom $type $space))) + (($_type Expression) (eval (interpret-expression $atom $type $space))) ))))) + +(= (interpret-expression $atom $type $space) + (eval (if-decons $atom $op $args + (chain (eval (get-type $op $space)) $op-type + (chain (eval (is-function $op-type)) $is-func + (match $is-func True + (chain (eval (interpret-func $atom $op-type $space)) $reduced-atom + (eval (call $reduced-atom $type $space)) ) + (chain (eval (interpret-tuple $atom $space)) $reduced-atom + (eval (call $reduced-atom $type $space)) )))) + (eval (type-cast $atom $type $space)) ))) + +(= (interpret-func $expr $type $space) + (eval (if-decons $expr $op $args + (chain (eval (interpret $op $type $space)) $reduced-op + (eval (return-on-error $reduced-op + (eval (if-decons $type $arrow $arg-types + (chain (eval (interpret-args $expr $args $arg-types $space)) $reduced-args + (eval (return-on-error $reduced-args + (cons $reduced-op $reduced-args) ))) + (Error $type "Function type expected") ))))) + (Error $expr "Non-empty expression atom is expected") ))) + +(= (interpret-args $atom $args $arg-types $space) + (match $args () + (match $arg-types ($ret) () (Error $atom BadType)) + (eval (if-decons $args $head $tail + (eval (if-decons $arg-types $head-type $tail-types + (chain (eval (interpret $head $head-type $space)) $reduced-head + ; check that head was changed otherwise Error or Empty in the head + ; can be just an argument which is passed by intention + (eval (if-equal $reduced-head $head + (eval (interpret-args-tail $atom $reduced-head $tail $tail-types $space)) + (eval (return-on-error $reduced-head + (eval (interpret-args-tail $atom $reduced-head $tail $tail-types $space)) ))))) + (Error $atom BadType) )) + (Error (interpret-atom $atom $args $arg-types $space) + "Non-empty expression atom is expected") )))) + +(= (interpret-args-tail $atom $head $args-tail $args-tail-types $space) + (chain (eval (interpret-args $atom $args-tail $args-tail-types $space)) $reduced-tail + (eval (return-on-error $reduced-tail + (cons $head $reduced-tail) )))) + +(= (interpret-tuple $atom $space) + (match $atom () + $atom + (eval (if-decons $atom $head $tail + (chain (eval (interpret $head %Undefined% $space)) $rhead + (chain (eval (interpret-tuple $tail $space)) $rtail + (cons $rhead $rtail) )) + (Error (interpret-tuple $atom $space) "Non-empty expression atom is expected as an argument") )))) + +(= (call $atom $type $space) + (chain (eval $atom) $result + (eval (if-empty $result $atom + (eval (if-error $result $result + (eval (interpret $result $type $space)) )))))) + +(: ErrorType Type) +(: Error (-> Atom Atom ErrorType)) +(: ReturnType Type) +(: return (-> Atom ReturnType)) + +(: function (-> Atom Atom)) +(: eval (-> Atom Atom)) +(: chain (-> Atom Variable Atom Atom)) +(: unify (-> Atom Atom Atom Atom Atom)) +(: cons (-> Atom Atom Atom)) +(: decons (-> Atom Atom)) + +(: id (-> Atom Atom)) +(= (id $x) $x) + +(: apply (-> Atom Variable Atom Atom)) +(= (apply $atom $var $templ) + (function (chain (eval (id $atom)) $var (return $templ))) ) + +(: if-non-empty-expression (-> Atom Atom Atom Atom)) +(= (if-non-empty-expression $atom $then $else) + (function (chain (eval (get-metatype $atom)) $type + (eval (if-equal $type Expression + (eval (if-equal $atom () (return $else) (return $then))) + (return $else) ))))) + +(: if-decons (-> Atom Variable Variable Atom Atom Atom)) +(= (if-decons $atom $head $tail $then $else) + (function (eval (if-non-empty-expression $atom + (chain (decons $atom) $list + (unify $list ($head $tail) (return $then) (return $else)) ) + (return $else) )))) + +(: if-empty (-> Atom Atom Atom Atom)) +(= (if-empty $atom $then $else) + (function (eval (if-equal $atom Empty (return $then) (return $else)))) ) + +(: if-not-reducible (-> Atom Atom Atom Atom)) +(= (if-not-reducible $atom $then $else) + (function (eval (if-equal $atom NotReducible (return $then) (return $else)))) ) + +(: if-error (-> Atom Atom Atom Atom)) +(= (if-error $atom $then $else) + (function (eval (if-decons $atom $head $_ + (eval (if-equal $head Error (return $then) (return $else))) + (return $else) )))) + +(: return-on-error (-> Atom Atom Atom)) +(= (return-on-error $atom $then) + (function (eval (if-empty $atom (return (return Empty)) + (eval (if-error $atom (return (return $atom)) + (return $then) )))))) + +(: switch (-> %Undefined% Expression Atom)) +(= (switch $atom $cases) + (function (chain (decons $cases) $list + (chain (eval (switch-internal $atom $list)) $res + (chain (eval (if-not-reducible $res Empty $res)) $x (return $x)) )))) + +(= (switch-internal $atom (($pattern $template) $tail)) + (function (unify $atom $pattern + (return $template) + (chain (eval (switch $atom $tail)) $ret (return $ret)) ))) + +;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; +; MeTTa interpreter implementation ; +;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; + +(= (match-types $type1 $type2 $then $else) + (function (eval (if-equal $type1 %Undefined% + (return $then) + (eval (if-equal $type2 %Undefined% + (return $then) + (eval (if-equal $type1 Atom + (return $then) + (eval (if-equal $type2 Atom + (return $then) + (unify $type1 $type2 (return $then) (return $else)) )))))))))) + +(= (type-cast $atom $type $space) + (function (chain (eval (get-metatype $atom)) $meta + (eval (if-equal $type $meta + (return $atom) + ; TODO: the proper way to get types is something like + ; `(collapse (get-type ))` but it leads to the infinite + ; recursion because interpreter called by `collapse` evaluates + ; `type-cast` again. + (chain (eval (collapse-get-type $atom $space)) $actual-types + (chain (eval (foldl-atom $actual-types False + $a $b (chain (eval (match-types $b $type True False)) $is-b-comp + (chain (eval (or $a $is-b-comp)) $or $or) ))) $is-some-comp + (eval (if $is-some-comp + (return $atom) + (return (Error $atom BadType)) ))))))))) + + +(= (is-function $type) + (function (chain (eval (get-metatype $type)) $meta + (eval (switch ($type $meta) ( + (($_ Expression) + (eval (if-decons $type $head $_tail + (unify $head -> (return True) (return False)) + (return (Error (is-function $type) "is-function non-empty expression as an argument")) ))) + ($_ (return False)) + )))))) + +(: filter-atom (-> Expression Variable Atom Expression)) +(= (filter-atom $list $var $filter) + (function (eval (if-decons $list $head $tail + (chain (eval (filter-atom $tail $var $filter)) $tail-filtered + (chain (eval (apply $head $var $filter)) $filter-expr + (chain $filter-expr $is-filtered + (eval (if $is-filtered + (chain (cons $head $tail-filtered) $res (return $res)) + (return $tail-filtered) ))))) + (return ()) )))) + +(: map-atom (-> Expression Variable Atom Expression)) +(= (map-atom $list $var $map) + (function (eval (if-decons $list $head $tail + (chain (eval (map-atom $tail $var $map)) $tail-mapped + (chain (eval (apply $head $var $map)) $map-expr + (chain $map-expr $head-mapped + (chain (cons $head-mapped $tail-mapped) $res (return $res)) ))) + (return ()) )))) + +(: foldl-atom (-> Expression Atom Variable Variable Atom Atom)) +(= (foldl-atom $list $init $a $b $op) + (function (eval (if-decons $list $head $tail + (chain (eval (apply $init $a $op)) $op-init + (chain (eval (apply $head $b $op-init)) $op-head + (chain $op-head $head-folded + (chain (eval (foldl-atom $tail $head-folded $a $b $op)) $res (return $res)) ))) + (return $init) )))) + +(= (interpret $atom $type $space) + (function (chain (eval (get-metatype $atom)) $meta + (eval (if-equal $type Atom + (return $atom) + (eval (if-equal $type $meta + (return $atom) + (eval (switch ($type $meta) ( + (($_type Variable) (return $atom)) + (($_type Symbol) + (chain (eval (type-cast $atom $type $space)) $ret (return $ret))) + (($_type Grounded) + (chain (eval (type-cast $atom $type $space)) $ret (return $ret))) + (($_type Expression) + (chain (eval (interpret-expression $atom $type $space)) $ret (return $ret))) + )))))))))) + +(= (interpret-expression $atom $type $space) + (function (eval (if-decons $atom $op $args + (chain (eval (get-type $op $space)) $op-type + (chain (eval (is-function $op-type)) $is-func + (unify $is-func True + (chain (eval (interpret-func $atom $op-type $type $space)) $reduced-atom + (chain (eval (metta-call $reduced-atom $type $space)) $ret (return $ret)) ) + (chain (eval (interpret-tuple $atom $space)) $reduced-atom + (chain (eval (metta-call $reduced-atom $type $space)) $ret (return $ret)) )))) + (chain (eval (type-cast $atom $type $space)) $ret (return $ret)) )))) + +(= (interpret-func $expr $type $ret-type $space) + (function (eval (if-decons $expr $op $args + (chain (eval (interpret $op $type $space)) $reduced-op + (eval (return-on-error $reduced-op + (eval (if-decons $type $arrow $arg-types + (chain (eval (interpret-args $expr $args $arg-types $ret-type $space)) $reduced-args + (eval (return-on-error $reduced-args + (chain (cons $reduced-op $reduced-args) $r (return $r))))) + (return (Error $type "Function type expected")) ))))) + (return (Error $expr "Non-empty expression atom is expected")) )))) + +(= (interpret-args $atom $args $arg-types $ret-type $space) + (function (unify $args () + (eval (if-decons $arg-types $actual-ret-type $_tail + (eval (match-types $actual-ret-type $ret-type + (return ()) + (return (Error $atom BadType)) )) + (return (Error (interpret-args $atom $args $arg-types $ret-type $space) "interpret-args expects a non-empty value for $arg-types argument")) )) + (eval (if-decons $args $head $tail + (eval (if-decons $arg-types $head-type $tail-types + (chain (eval (interpret $head $head-type $space)) $reduced-head + ; check that head was changed otherwise Error or Empty in the head + ; can be just an argument which is passed by intention + (eval (if-equal $reduced-head $head + (chain (eval (interpret-args-tail $atom $reduced-head $tail $tail-types $ret-type $space)) $ret (return $ret)) + (eval (return-on-error $reduced-head + (chain (eval (interpret-args-tail $atom $reduced-head $tail $tail-types $ret-type $space)) $ret (return $ret)) ))))) + (return (Error $atom BadType)) )) + (return (Error (interpret-atom $atom $args $arg-types $space) "Non-empty expression atom is expected")) ))))) + +(= (interpret-args-tail $atom $head $args-tail $args-tail-types $ret-type $space) + (function (chain (eval (interpret-args $atom $args-tail $args-tail-types $ret-type $space)) $reduced-tail + (eval (return-on-error $reduced-tail + (chain (cons $head $reduced-tail) $ret (return $ret)) ))))) + +(= (interpret-tuple $atom $space) + (function (unify $atom () + (return $atom) + (eval (if-decons $atom $head $tail + (chain (eval (interpret $head %Undefined% $space)) $rhead + (eval (if-empty $rhead (return Empty) + (chain (eval (interpret-tuple $tail $space)) $rtail + (eval (if-empty $rtail (return Empty) + (chain (cons $rhead $rtail) $ret (return $ret)) )))))) + (return (Error (interpret-tuple $atom $space) "Non-empty expression atom is expected as an argument")) ))))) + +(= (metta-call $atom $type $space) + (function (eval (if-error $atom (return $atom) + (chain (eval $atom) $result + (eval (if-not-reducible $result (return $atom) + (eval (if-empty $result (return Empty) + (eval (if-error $result (return $result) + (chain (eval (interpret $result $type $space)) $ret (return $ret)) ))))))))))) + +;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; +; Standard library written in MeTTa ; +;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; + +;`$then`, `$else` should be of `Atom` type to avoid evaluation +; and infinite cycle in inference +(: if (-> Bool Atom Atom $t)) +(= (if True $then $else) $then) +(= (if False $then $else) $else) + +(: or (-> Bool Bool Bool)) +(= (or False False) False) +(= (or False True) True) +(= (or True False) True) +(= (or True True) True) + +(: and (-> Bool Bool Bool)) +(= (and False False) False) +(= (and False True) False) +(= (and True False) False) +(= (and True True) True) + +(: match (-> Atom Atom Atom %Undefined%)) +(= (match $space $pattern $template) + (unify $pattern $space $template Empty)) + +(: let (-> Atom %Undefined% Atom Atom)) +(= (let $pattern $atom $template) + (unify $atom $pattern $template Empty)) + +(: let* (-> Expression Atom Atom)) +(= (let* $pairs $template) + (eval (if-decons $pairs ($pattern $atom) $tail + (let $pattern $atom (let* $tail $template)) + $template ))) + +(: car-atom (-> Expression Atom)) +(= (car-atom $atom) + (eval (if-decons $atom $head $_ + $head + (Error (car-atom $atom) "car-atom expects a non-empty expression as an argument") ))) + +(: cdr-atom (-> Expression Expression)) +(= (cdr-atom $atom) + (eval (if-decons $atom $_ $tail + $tail + (Error (cdr-atom $atom) "cdr-atom expects a non-empty expression as an argument") ))) + +(: quote (-> Atom Atom)) +(= (quote $atom) NotReducible) + +(: unquote (-> %Undefined% %Undefined%)) +(= (unquote (quote $atom)) $atom) + +; TODO: there is no way to define operation which consumes any number of +; arguments and returns unit +(= (nop) ()) +(= (nop $x) ()) + diff --git a/metta_vspace/pyswip-want/metta_prelude.pl b/metta_vspace/pyswip-want/metta_prelude.pl new file mode 100755 index 00000000..8594b787 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_prelude.pl @@ -0,0 +1,242 @@ +%;`$then`, `$else` should be of `Atom` type to avoid evaluation +%; and infinite cycle in inference +metta_type('&self',if,[ ->, 'Bool','Atom','Atom',_]). +metta_defn_ES([if,'True',A,_],A). +metta_defn_ES([if,'False',_,A],A). +metta_type('&self','Error',[->,'Atom','Atom','ErrorType']). +metta_defn_ES(['if-non-empty-expression',A,B,C],[ chain, + [ eval, + ['get-metatype',A]], + D, + [ eval, + [ 'if-equal', D,'Expression', + [ eval, + [ 'if-equal', A, [], C, B]], + C]]]). +metta_defn_ES([ 'if-decons', A,B,C,D, + E],[ eval, + [ 'if-non-empty-expression', + A, + [ chain, + [decons,A], + F, + [ match, + F, + [B,C], D,E]], + E]]). +metta_defn_ES(['if-empty',A,B,C],[ eval, + [ 'if-equal', A,'Empty',B,C]]). +metta_defn_ES(['if-error',A,B,C],[ eval, + [ 'if-decons', A,D,_, + [ eval, + [ 'if-equal', D,'Error',B,C]], + C]]). +metta_defn_ES(['return-on-error',A,B],[ eval, + [ 'if-empty', A,'Empty', + [ eval, + ['if-error',A,A,B]]]]). +metta_defn_ES([car,A],[ eval, + [ 'if-decons', A,B,_,B, + [ 'Error', + [car,A], + '$STRING'("car expects a non-empty expression as an argument")]]]). +metta_defn_ES([switch,A,B],[ chain, + [decons,B], + C, + [ eval, + ['switch-internal',A,C]]]). +metta_defn_ES([ 'switch-internal', + A, + [ [B,C], + D]],[ match, A,B,C, + [ eval, + [switch,A,D]]]). +metta_defn_ES([subst,A,B,C],[ match, A,B,C, + [ 'Error', + [subst,A,B,C], + '$STRING'("subst expects a variable as a second argument")]]). +metta_defn_ES([reduce,A,B,C],[ chain, + [eval,A], + D, + [ eval, + [ 'if-error', D,D, + [ eval, + [ 'if-empty', + D, + [ eval, + [subst,A,B,C]], + [ eval, + [reduce,D,B,C]]]]]]]). +metta_defn_ES(['type-cast',A,B,C],[ chain, + [ eval, + ['get-type',A,C]], + D, + [ eval, + [ switch, + [D,B], + [ [ ['%Undefined%',E], + A], + [ [E,'%Undefined%'], + A], + [ [B,E], + A], + [ E, + ['Error',A,'BadType']]]]]]). +metta_defn_ES(['is-function',A],[ chain, + [ eval, + ['get-metatype',A]], + B, + [ eval, + [ switch, + [A,B], + [ [ [C,'Expression'], + [ chain, + [ eval, + [car,A]], + D, + [ match, D,->,'True','False']]], + [C,'False']]]]]). +metta_defn_ES([interpret,A,B,C],[ chain, + [ eval, + ['get-metatype',A]], + D, + [ eval, + [ switch, + [B,D], + [ [ ['Atom',_], + A], + [ [D,D], + A], + [ [E,'Variable'], + A], + [ [E,'Symbol'], + [ eval, + ['type-cast',A,B,C]]], + [ [E,'Grounded'], + [ eval, + ['type-cast',A,B,C]]], + [ [E,'Expression'], + [ eval, + ['interpret-expression',A,B,C]]]]]]]). +metta_defn_ES(['interpret-expression',A,B,C],[ eval, + [ 'if-decons', A,D,_, + [ chain, + [ eval, + ['get-type',D,C]], + E, + [ chain, + [ eval, + ['is-function',E]], + F, + [ match, F,'True', + [ chain, + [ eval, + ['interpret-func',A,E,C]], + G, + [ eval, + [call,G,B,C]]], + [ chain, + [ eval, + ['interpret-tuple',A,C]], + G, + [ eval, + [call,G,B,C]]]]]], + [ eval, + ['type-cast',A,B,C]]]]). +metta_defn_ES(['interpret-func',A,B,C],[ eval, + [ 'if-decons', A,D,E, + [ chain, + [ eval, + [interpret,D,B,C]], + F, + [ eval, + [ 'return-on-error', + F, + [ eval, + [ 'if-decons', B,_,G, + [ chain, + [ eval, + [ 'interpret-args', A,E,G, + C]], + H, + [ eval, + [ 'return-on-error', + H, + [cons,F,H]]]], + [ 'Error', B,'$STRING'("Function type expected")]]]]]], + [ 'Error', + A, + '$STRING'("Non-empty expression atom is expected")]]]). +metta_defn_ES([ 'interpret-args', A,B,C,D],[ match, + B, + [], + [ match, + C, + [_], + [], + ['Error',A,'BadType']], + [ eval, + [ 'if-decons', B,E,F, + [ eval, + [ 'if-decons', C,G,H, + [ chain, + [ eval, + [interpret,E,G,D]], + I, + [ eval, + [ 'if-equal', I,E, + [ eval, + [ 'interpret-args-tail', A,I,F, + H,D]], + [ eval, + [ 'return-on-error', + I, + [ eval, + [ 'interpret-args-tail', A,I,F, + H,D]]]]]]], + ['Error',A,'BadType']]], + [ 'Error', + [ 'interpret-atom', A,B,C, + D], + '$STRING'("Non-empty expression atom is expected")]]]]). +%; check that head was changed otherwise Error or Empty in the head +%; can be just an argument which is passed by intention +metta_defn_ES([ 'interpret-args-tail', A,B,C,D, + E],[ chain, + [ eval, + [ 'interpret-args', A,C,D,E]], + F, + [ eval, + [ 'return-on-error', + F, + [cons,B,F]]]]). +metta_defn_ES(['interpret-tuple',A,B],[ match, + A, + [], + A, + [ eval, + [ 'if-decons', A,C,D, + [ chain, + [ eval, + [interpret,C,'%Undefined%',B]], + E, + [ chain, + [ eval, + ['interpret-tuple',D,B]], + F, + [cons,E,F]]], + [ 'Error', + ['interpret-tuple',A,B], + '$STRING'("Non-empty expression atom is expected as an argument")]]]]). +metta_defn_ES([call,A,B,C],[ chain, + [eval,A], + D, + [ eval, + [ 'if-empty', D,A, + [ eval, + [ 'if-error', D,D, + [ eval, + [interpret,D,B,C]]]]]]]). +% 1,264,919 inferences, 0.139 CPU in 0.140 seconds (99% CPU, 9074539 Lips) +% (= metta_prelude.metta 0) + diff --git a/metta_vspace/pyswip-want/metta_printer.pl b/metta_vspace/pyswip-want/metta_printer.pl new file mode 100755 index 00000000..44c1bbe6 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_printer.pl @@ -0,0 +1,143 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +% =============================== +% PRINTERS +% =============================== +% 'ppc' and 'ppc1' rules pretty-print original terms and convert them to metta if different, +% printing the converted forms as well. +ppc(Msg,Term):- ppc1(Msg,Term), p2m(Term,MeTTa),!, (MeTTa\==Term -> ppc1(p2m(Msg),MeTTa) ; true). + +ppc1(Msg,Term):- \+ \+ ( ppct(Msg,Term) ),!. + +ppc1(Msg,Term):- \+ \+ ( ignore(guess_pretty(Term)), + writeln('---------------------'), + write(p(Msg)),write(':'),nl, + portray_clause(Term), + writeln('---------------------'), + \+ \+ (print_tree(?-show_cvts(Term))),nl, + writeln('---------------------'), + write(s(Msg)),write(':'),nl, + write_src(Term),nl). + +ppct(Msg,Term):- is_list(Term),!, + writeln('---------------------'), + numbervars(Term,666,_,[attvar(bind)]), + write((Msg)),write(':'),nl, + write_src(Term),nl. +ppct(Msg,Term):- Term=(_ :- _),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + portray_clause(Term),nl. +ppct(Msg,Term):- Term=(_=_),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + numbervars(Term,444,_,[attvar(bind)]), + write_src(Term),nl. +ppct(Msg,Term):- Term=(_ :- _),!, + writeln('---------------------'), + write((Msg)),write(':'),nl, + numbervars(Term,222,_,[attvar(bind)]), + print_tree(Term),nl. + +% 'pp_metta' rule is responsible for pretty-printing metta terms. +pp_metta(P):- pretty_numbervars(P,PP),with_option(concepts=false,pp_fb(PP)). + +% The predicate with_indents/2 modifies the src_indents option value during the execution of a goal. +% The first argument is the desired value for src_indents, +% and the second argument is the Goal to be executed with the given src_indents setting. +with_indents(TF, Goal) :- + % Set the value of the `src_indents` option to TF and then execute the Goal + with_option(src_indents, TF, Goal). + +% The predicate allow_concepts/0 checks whether the use of concepts is allowed. +% It does this by checking the value of the concepts option and ensuring it is not false. +allow_concepts :- !, fail, + % Check if the option `concepts` is not set to false + option_else(concepts, TF, 'False'), + \+ TF == 'False'. + +% The predicate with_concepts/2 enables or disables the use of concepts during the execution of a given goal. +% The first argument is a Boolean indicating whether to enable (true) or disable (false) concepts. +% The second argument is the Goal to be executed with the given concepts setting. +with_concepts(TF, Goal) :- + % Set the value of the `concepts` option to TF and then execute the Goal + with_option(concepts, TF, Goal). + + +% Various 'write_src' and 'write_src0' rules are handling the writing of the source, +% dealing with different types of values, whether they are lists, atoms, numbers, strings, compounds, or symbols. +write_src(V):- notrace(write_src0(V)). +write_src0(V):- V ==[],!,write('()'). +write_src0(V):- allow_concepts,!,with_concepts('False',write_src1(V)),flush_output. +write_src0(V):- is_list(V),!,pp_sexi(V). +write_src0(V):- write_src1(V),!. + +% Handling the final write when the value is a variable or a '$VAR' structure. +is_final_write(V):- var(V), !, format('$~p',[V]). +is_final_write('$VAR'(S)):- !, write('$'),write(S). + +% Handling more cases for 'write_src1', when the value is a number, a string, a symbol, or a compound. +write_src1(V) :- is_final_write(V),!. +write_src1((Head:-Body)) :- !, print_metta_clause0(Head,Body). +write_src1(''):- !, write('()'). +write_src1(V):- number(V),!, writeq(V). +write_src1(V):- string(V),!, writeq(V). + +% Continuing with 'write_src1', 'write_mobj', and related rules, +% handling different cases based on the value’s type and structure, and performing the appropriate writing action. +write_src1(V):- symbol(V), should_quote(V),!, + symbol_string(V,S),writeq(S). +write_src1(V):- symbol(V),!,write(V). +write_src1(V):- compound(V), \+ is_list(V),!,write_mobj(V). +write_src1(V):- pp_sex(V),!. + +write_mobj(V) :- is_final_write(V),!. +write_mobj(V):- ( \+ compound(V) ; is_list(V)),!, write_src0(V). + +write_mobj(V):- compound_name_list(V,F,Args),write_mobj(F,Args),!. +write_mobj(V):- writeq(V). +write_mobj(exec,[V]):- !, write('!'),write_src(V). +write_mobj('$OBJ',[_,S]):- write('['),write_src(S),write(' ]'). +write_mobj('{...}',[S]):- write('{'),write_src(S),write(' }'). +write_mobj('[...]',[S]):- write('['),write_src(S),write(' ]'). +write_mobj('$STRING',[S]):- !, writeq(S). +write_mobj(F,Args):- fail, mlog_sym(K),!,pp_sexi([K,F|Args]). +write_mobj(F,Args):- pp_sexi([F|Args]). + +% Rules for determining when a symbol needs to be quoted in metta. +dont_quote(Atom):- atom_length(Atom,1), !, char_type(Atom,punct). +dont_quote(Atom):- atom(Atom),upcase_atom(Atom,Atom),downcase_atom(Atom,Atom). + +should_quote(Atom) :- \+ atom(Atom), \+ string(Atom),!,fail. +should_quote(Atom) :- + \+ dont_quote(Atom), + % atom(Atom), % Ensure that the input is an atom + atom_chars(Atom, Chars), + once(should_quote_chars(Chars);should_quote_atom_chars(Atom,Chars)). + +contains_unescaped_quote(['"']):- !, fail. % End with a quote +contains_unescaped_quote(['"'|_]) :- !. +contains_unescaped_quote(['\\', '"'|T]) :- !, contains_unescaped_quote(T). +contains_unescaped_quote([_|T]) :- contains_unescaped_quote(T). + +% Check if the list of characters should be quoted based on various conditions +should_quote_chars([]). +should_quote_chars(['"'|Chars]):- !, contains_unescaped_quote(Chars). +should_quote_chars(Chars) :- + member('"', Chars); % Contains quote not captured with above clause + member(' ', Chars); % Contains space + member('''', Chars); % Contains single quote + % member('/', Chars); % Contains slash + member(',', Chars); % Contains comma + (fail,member('|', Chars)). % Contains pipe +%should_quote_atom_chars(Atom,_) :- atom_number(Atom,_),!. +should_quote_atom_chars(Atom,[Digit|_]) :- fail, char_type(Digit, digit), \+ atom_number(Atom,_). + +% Example usage: +% ?- should_quote('123abc'). +% true. +% ?- should_quote('123.456'). +% false. + diff --git a/metta_vspace/pyswip-want/metta_python.pl b/metta_vspace/pyswip-want/metta_python.pl new file mode 100755 index 00000000..402ba431 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_python.pl @@ -0,0 +1,314 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +%:- '$set_source_module'('user'). +/* +# Core in Rust +In the original version, the core logic and functionalities of the MeTTa system are implemented in Rust. Rust is known for its performance and safety features, making it a suitable choice for building robust, high-performance systems. + +# Python Extensions +Python is used to extend or customize MeTTa. Typically, Python interacts with the Rust core through a Foreign Function Interface (FFI) or similar bridging mechanisms. This allows Python programmers to write code that can interact with the lower-level Rust code, while taking advantage of Python's ease of use and rich ecosystem. + +# Prolog Allows Python Extensions +Just like the Rust core allowed for Python extensions, the Prolog code also permits Python and Rust developers (thru python right now) to extend or customize parts of MeTTa. This maintains the system?s extensibility and allows users who are more comfortable with Python to continue working with the system effectively. + +*/ + + +:- use_module(library(janus)). +:- use_module(library(filesex)). + +:- multifile(is_python_space/1). +:- dynamic(is_python_space/1). +:- volatile(is_python_space/1). + +is_rust_space(GSpace):- is_python_space(GSpace). + +is_not_prolog_space(GSpace):- is_rust_space(GSpace), !. +is_not_prolog_space(GSpace):- \+ is_asserted_space(GSpace), \+ is_nb_space(GSpace), !. + +with_safe_argv(Goal):- + current_prolog_flag(argv,Was), + setup_call_cleanup(set_prolog_flag(argv,[]),Goal,set_prolog_flag(argv,Was)). + +ensure_space_py(Space,GSpace):- py_is_object(Space),!,GSpace=Space. +ensure_space_py(Space,GSpace):- var(Space),ensure_primary_metta_space(GSpace), Space=GSpace. +ensure_space_py(metta_self,GSpace):- ensure_primary_metta_space(GSpace),!. + +:- dynamic(is_metta/1). +:- volatile(is_metta/1). +ensure_rust_metta(MeTTa):- is_metta(MeTTa),!. +ensure_rust_metta(MeTTa):- + with_safe_argv(py_call(hyperon:'MeTTa'(),MeTTa)), + asserta(is_metta(MeTTa)). + +ensure_rust_metta:- ensure_rust_metta(_). + +:- dynamic(is_metta_learner/1). +:- volatile(is_metta_learner/1). +ensure_metta_learner(Metta_Learner):- is_metta_learner(Metta_Learner),!. +ensure_metta_learner(Metta_Learner):- + with_safe_argv(py_call(metta_vspace:'metta_learner':'MettaLearner'(),Metta_Learner)), + asserta(is_metta_learner(Metta_Learner)). + + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_not_prolog_space,new_space,new_rust_space). +space_type_method(is_not_prolog_space,add_atom,add_to_space). +space_type_method(is_not_prolog_space,remove_atom,remove_from_space). +space_type_method(is_not_prolog_space,replace_atom,replace_in_space). +space_type_method(is_not_prolog_space,atom_count,atom_count_from_space). +space_type_method(is_not_prolog_space,get_atoms,query_from_space). +space_type_method(is_not_prolog_space,atom_iter,atoms_iter_from_space). +space_type_method(is_not_prolog_space,query,query_from_space). + +:- dynamic(is_primary_metta_space/1). +:- volatile(is_primary_metta_space/1). +% Initialize a new hyperon.base.GroundingSpace and get a reference +ensure_primary_metta_space(GSpace) :- is_primary_metta_space(GSpace),!. +ensure_primary_metta_space(GSpace) :- ensure_rust_metta(MeTTa), + with_safe_argv(py_call(MeTTa:space(),GSpace)), + asserta(is_primary_metta_space(GSpace)). +ensure_primary_metta_space(GSpace) :- new_rust_space(GSpace). +ensure_primary_metta_space:- ensure_primary_metta_space(_). + +:- if( \+ current_predicate(new_rust_space/1 )). +% Initialize a new hyperon.base.GroundingSpace and get a reference +new_rust_space(GSpace) :- + with_safe_argv(py_call(hyperon:base:'GroundingSpace'(), GSpace)), + asserta(is_python_space(GSpace)). +:- endif. + +:- if( \+ current_predicate(query_from_space/3 )). +% Query from hyperon.base.GroundingSpace +query_from_space(Space, QueryAtom, Result) :- + ensure_space(Space,GSpace), + py_call(GSpace:'query'(QueryAtom), Result). + + +% Replace an atom in hyperon.base.GroundingSpace +replace_in_space(Space, FromAtom, ToAtom) :- + ensure_space(Space,GSpace), + py_call(GSpace:'replace'(FromAtom, ToAtom), _). + +% Get the atom count from hyperon.base.GroundingSpace +atom_count_from_space(Space, Count) :- + ensure_space(Space,GSpace), + py_call(GSpace:'atom_count'(), Count). + +% Get the atoms from hyperon.base.GroundingSpace +atoms_from_space(Space, Atoms) :- + ensure_space(Space,GSpace), + py_call(GSpace:'get_atoms'(), Atoms). + +atom_from_space(Space, Sym):- + atoms_iter_from_space(Space, Atoms),elements(Atoms,Sym). + +% Get the atom iterator from hyperon.base.GroundingSpace +atoms_iter_from_space(Space, Atoms) :- + ensure_space(Space,GSpace), + with_safe_argv(py_call(metta_vspace:'metta_learner':get_atoms_iter_from_space(GSpace),Atoms)), + %py_call(GSpace:'atoms_iter'(), Atoms). + true. +:- endif. + +py_to_pl(I,O):- py_to_pl(_,I,O). +py_to_pl(VL,I,O):- ignore(VL=[vars]), py_to_pl(VL,[],[],_,I,O),!. +is_var_or_nil(I):- var(I),!. +is_var_or_nil([]). +%py_to_pl(VL,Par,_Cir,_,L,_):- fbug(py_to_pl(VL,Par,L)),fail. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- var(L),!,E=L. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- L ==[],!,E=L. +py_to_pl(_VL,_Par,Cir,Cir,L,E):- member(N-NE,Cir), N==L, !, (E=L;NE=E), !. +py_to_pl(_VL,_Par,Cir,Cir, LORV:_B:_C,LORV):- is_var_or_nil(LORV), !. +py_to_pl(VL,Par,Cir,CirO,[H|T]:B:C,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B:C,HH), py_to_pl(VL,Par,CirM,CirO,T:B:C,TT). +py_to_pl(_VL,_Par,Cir,Cir, LORV:_B,LORV):- is_var_or_nil(LORV), !. +py_to_pl(VL,Par,Cir,CirO,[H|T]:B,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B,HH), py_to_pl(VL,Par,CirM,CirO,T:B,TT). +py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R:C,AB). +py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R,AB). +py_to_pl(VL,Par,Cir,CirO,A:B,AA:BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). +py_to_pl(VL,Par,Cir,CirO,A-B,AA-BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). +py_to_pl(_VL,_Par,Cir,Cir,L,E):- atom(L),!,E=L. +py_to_pl(VL,Par,Cir,CirO,[H|T],[HH|TT]):- !, py_to_pl(VL,Par,Cir,CirM,H,HH), py_to_pl(VL,Par,CirM,CirO,T,TT). +py_to_pl(VL,Par,Cir,CirO,O,E):- py_is_object(O),py_class(O,Cl),!,pyo_to_pl(VL,Par,[O=E|Cir],CirO,Cl,O,E). +py_to_pl(VL,Par,Cir,CirO,L,E):- is_dict(L,F),!,dict_pair(L,F,NV),!,py_to_pl(VL,Par,Cir,CirO,NV,NVL),dict_pair(E,F,NVL). +py_to_pl(_VL,_Par,Cir,Cir,L,E):- \+ callable(L),!,E=L. +%py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R:C,AB). +%py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R,AB). +py_to_pl(VL,Par,Cir,CirO,A,AA):- compound(A),!,compound_name_arguments(A,F,L),py_to_pl(VL,Par,Cir,CirO,L,LL),compound_name_arguments(AA,F,LL). +py_to_pl(_VL,_Par,Cir,Cir,E,E). +/* +varname_to_real_var(RL,E):- upcase_atom(RL,R),varname_to_real_var0(R,E). +varname_to_real_var0(R,E):- nb_current('cvariable_names',VL),!,varname_to_real_var0(R,VL,E). +varname_to_real_var0(R,E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). +varname_to_real_var0(R,[],E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). +varname_to_real_var0(R,VL,E):- member(N=V,VL), N==R,!,arg(1,V,E). +varname_to_real_var0(R,VL,E):- extend_container(VL,R=v(_)),varname_to_real_var0(R,E).*/ +% Predicate to extend the list inside the container +extend_container(Container, Element) :- + arg(2, Container, List), + nb_setarg(2, Container, [Element|List]). + +rinto_varname(R,RN):- atom_number(R,N),atom_concat('Num',N,RN). +rinto_varname(R,RN):- upcase_atom(R,RN). +real_VL_var(RL,VL,E):- nonvar(RL), !, rinto_varname(RL,R),!,real_VL_var0(R,VL,E). +real_VL_var(RL,VL,E):- member(N=V,VL), V==E,!,RL=N. +real_VL_var(RL,VL,E):- compound(E),E='$VAR'(RL),ignore(real_VL_var0(RL,VL,E)),!. +real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), member(N=V,VL), N==RL,!,V=E. +real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), real_VL_var0(RL,VL,E). +real_VL_var0(R,VL,E):- member(N=V,VL), N==R,!,V=E. +real_VL_var0(R,VL,E):- extend_container(VL,R=E),!. % ,E='$VAR'(R). + +pyo_to_pl(VL,_Par,Cir,Cir,Cl,O,E):- Cl=='VariableAtom', !, py_call(O:get_name(),R), real_VL_var(R,VL,E),!. +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl1(Par,Cl,M),py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl(Par,Cl,M), % fbug(class_to_pl(Par,Cl,M)), + py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- catch(py_obj_dir(O,L),_,fail),fbug(py_obj_dir(O,L)),py_decomp(M),meets_dir(L,M),fbug(py_decomp(M)), + py_member_values(O,M,R), member(N-_,Cir), R\==N, !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E),!. + +pl_to_py(Var,Py):- pl_to_py(_VL,Var,Py). +pl_to_py(VL,Var,Py):- var(VL),!,ignore(VL=[vars]),pl_to_py(VL,Var,Py). +pl_to_py(_VL,Sym,Py):- is_list(Sym),!, maplist(pl_to_py,Sym,PyL), py_call(metta_vspace:'metta_learner':'MkExpr'(PyL),Py),!. +pl_to_py(VL,Var,Py):- var(Var), !, real_VL_var(Sym,VL,Var), py_call('hyperon.atoms':'V'(Sym),Py),!. +pl_to_py(VL,'$VAR'(Sym),Py):- !, real_VL_var(Sym,VL,_),py_call('hyperon.atoms':'V'(Sym),Py),!. +pl_to_py(VL,DSym,Py):- atom(DSym),atom_concat('$',VName,DSym), rinto_varname(VName,Sym),!, pl_to_py(VL,'$VAR'(Sym),Py). +pl_to_py(_VL,Sym,Py):- atom(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. +pl_to_py(_VL,Sym,Py):- string(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. +%pl_to_py(VL,Sym,Py):- is_list(Sym), maplist(pl_to_py,Sym,PyL), py_call('hyperon.atoms':'E'(PyL),Py),!. +pl_to_py(_VL,Sym,Py):- py_is_object(Sym),py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. +pl_to_py(_VL,Sym,Py):- py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. + +%elements(Atoms,E):- is_list(Atoms),!, +meets_dir(L,M):- atom(M),!,member(M,L),!. +meets_dir(L,M):- is_list(M),!,maplist(meets_dir(L),M). +meets_dir(L,M):- compound_name_arity(M,N,0),!,member(N,L),!. +meets_dir(L,M):- compound(M),!,compound_name_arguments(M,F,[A|AL]),!,maplist(meets_dir(L),[F,A|AL]). + +py_member_values(O,C,R):- is_list(O),!,maplist(py_member_values,O,C,R). +py_member_values(O,C,R):- is_list(C),!,maplist(py_member_values(O),C,R). +%py_member_values(O,C,R):- atom(C),!,compound_name_arity(CC,C,0),!,py_call(O:CC,R). +py_member_values(O,f(F,AL),R):- !,py_member_values(O,[F|AL],[RF|RAL]), compound_name_arguments(R,RF,RAL). +py_member_values(O,C,R):- py_call(O:C,R,[py_string_as(atom),py_object(false)]). + +py_to_str(PyObj,Str):- + with_output_to(string(Str),py_pp(PyObj,[nl(false)])). + + tafs:- + atoms_from_space(Space, _),py_to_pl(VL,Space,AA), print_tree(aa(Pl,aa)),pl_to_py(VL,AA,Py), print_tree(py(Pl,py)),pl_to_py(VL,Py,Pl),print_tree(pl(Pl,pl)) + , + atoms_from_space(Space, [A]),py_to_pl(VL,A,AA), + atoms_from_space(Space, [A]),py_obj_dir(A,D),writeq(D),!,py_to_pl(VL,D:get_object(),AA),writeq(AA),!,fail. + +py_class(A,AA):- py_call(A:'__class__',C), py_call(C:'__name__',AA,[py_string_as(atom)]),!. +py_decomp(M,C):- py_decomp(M), compound_name_arity(C,M,0). + + +class_to_pl1(_Par,'GroundingSpaceRef',get_atoms()). +class_to_pl1(_Par,'ExpressionAtom',get_children()). +class_to_pl1(_Par,'SpaceRef',get_atoms()). +class_to_pl1(_Par,'VariableAtom','__repr__'()). +class_to_pl1(_Par,'SymbolAtom',get_name()). +class_to_pl1(_Par,'bool','__repr__'()). +class_to_pl(_Par,'ValueAtom','__repr__'()). +class_to_pl(_Par,'ValueObject','value'). +class_to_pl(Par,'GroundedAtom','__repr__'()):- length(Par,Len),Len>=5,!. +class_to_pl(Par,_,'__str__'()):- length(Par,Len),Len>15,!. +class_to_pl(_Par,'GroundedAtom',get_object()). + +/* + + +class_to_pl(Par,'bool','__repr__'()). + +*/ +py_decomp('__repr__'()). +py_decomp('__str__'()). +py_decomp(get_atoms()). +py_decomp(get_children()). +py_decomp(get_object()). +py_decomp(get_name()). +py_decomp(value()). + +py_decomp('__class__':'__name__'). +%py_decomp(f(get_grounded_type(),['__str__'()])). +py_decomp(f('__class__',['__str__'()])). +%__class__ +%get_type() + +%atoms_from_space(Space, [Atoms]),py_pp(Atoms),py_call(Atoms:get_object(),A),atoms_from_space(A,Dir),member(E,Dir),py_obj_dir(E,C),py_call(E:get_children(),CH),py_pp(CH). + + +% Remove an atom from hyperon.base.GroundingSpace +:- if( \+ current_predicate(remove_from_space/2 )). +remove_from_space(Space, Sym) :- + ensure_space(Space,GSpace), + py_call(GSpace:'remove'(Sym), _). +:- endif. + +% Add an atom to hyperon.base.GroundingSpace +:- if( \+ current_predicate(add_to_space/2 )). +add_to_space(Space, Sym) :- + ensure_space(Space,GSpace), + py_call(GSpace:'add'(Sym), _). +:- endif. + + +'extend-py!'(Module,_):- + with_safe_argv(( + %listing(ensure_rust_metta/1), + ensure_metta_learner, + fbug('extend-py!'(Module)), + ensure_rust_metta(MeTTa), + replace_in_string(["/"="."],Module,ToPython), + py_call(MeTTa:load_py_module(ToPython),Result), + fbug(result(MeTTa->Result)))),!. + +ensure_metta_learner:- + with_safe_argv(ensure_metta_learner(Learner)), + fbug(ensure_metta_learner(Learner)). + +% Example usage +example_usage :- + with_safe_argv(ensure_primary_metta_space(GSpace)), + %some_query(Query), + Query = [], + with_safe_argv(query_from_space(GSpace, Query , Result)), + writeln(Result). + +%atoms_from_space(Sym):- atoms_iter_from_space(metta_self, Atoms),py_iter(Atoms,Sym). +atom_count_from_space(Count):- atom_count_from_space(metta_self, Count). + + +%:- . +%:- ensure_rust_metta. +%:- with_safe_argv(ensure_primary_metta_space(_GSpace)). +/* +Rust: The core of MeTTa is implemented in Rust, which provides performance and safety features. + +Python Extensions: Python is used for extending the core functionalities. Python communicates with Rust via a Foreign Function Interface (FFI) or similar mechanisms. + +Prolog: The Prolog code is an additional layer that allows you to extend or customize parts of MeTTa using Python and Rust. It maintains the system's extensibility. + + +VSpace is a space with its backend in Prolog, it implies that you're using Prolog's logic programming capabilities to manage and manipulate a particular domain, which in this context is referred to as a "space" (possibly akin to the GroundingSpace in Python, but implemented in Prolog). + +To integrate VSpace with the existing Python and Rust components, similar interfacing techniques could be used. You could expose Prolog predicates as functions that can be called from Python or Rust, and likewise, call Python or Rust functions from within Prolog. + + +*/ + +%:- ensure_loaded(metta_interp). +on_restore1:- ensure_metta_learner. + +:- dynamic(want_py_lib_dir/1). +:- prolog_load_context(directory, ChildDir), + file_directory_name(ChildDir, ParentDir), + file_directory_name(ParentDir, GParentDir), + assert(want_py_lib_dir(GParentDir)). + +want_py_lib_dir:- + with_safe_argv(forall(want_py_lib_dir(GParentDir), py_add_lib_dir(GParentDir))). + +%:- initialization(on_restore1,restore). +%:- initialization(on_restore2,restore). diff --git a/metta_vspace/pyswip-want/metta_reader.new b/metta_vspace/pyswip-want/metta_reader.new new file mode 100755 index 00000000..a232a417 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_reader.new @@ -0,0 +1,1618 @@ +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ +%:- encoding(iso_latin_1). +:- if(flush_output). :- endif. +:- if(setenv('RUST_BACKTRACE',full)). :- endif. +%:- if(\+ current_module(sxpr_reader)). +:- if( (false, \+ current_prolog_flag(wamcl_modules,false))). +:- module(s3xpr,[ + parse_sexpr/2, + codelist_to_forms/2, + svar_fixvarname/2, + parse_sexpr_untyped/2, + with_kifvars/1, + current_input_to_forms/2, + input_to_forms/2, + input_to_forms/3, + input_to_forms_debug/1, + input_to_forms_debug/2, + sexpr_sterm_to_pterm_list/3, + sexpr//1, + fixvars/4, + txt_to_codes/2, + quietly_sreader/1, + file_sexpr_with_comments//1, + with_lisp_translation/2, + to_untyped/2, + ok_var_name/1, + with_all_rest_info/1, + svar_fixvarname/2, + sexpr_sterm_to_pterm/2, + lisp_read/2, + phrase_from_stream_nd/2, + write_trans/4, + parse_sexpr/2]). +:- endif. + +:- ensure_loaded(swi_support). +:- ensure_loaded(metta_utils). +:- ensure_loaded(metta_testing). +:- set_prolog_flag(encoding,iso_latin_1). +is_wam_cl:- fail. + +:- use_module(library(backcomp)). +:- use_module(library(rbtrees)). + + +:- use_module(library(logicmoo/dcg_must)). +:- use_module(library(logicmoo/dcg_meta)). + + +%:- meta_predicate always_b(//,?,?). +%:- meta_predicate bx(0). +:- meta_predicate call_proc(1,?). +:- meta_predicate dcg_and2(//,//,?,?). +:- meta_predicate dcg_each_call_cleanup(0,//,0,?,?). +:- meta_predicate dcg_not(//,?,?). +:- meta_predicate dcg_phrase(//,?,?). +:- meta_predicate dcg_xor(//,//,?,?). +%:- meta_predicate expr_with_text(*,2,*,*,*). + +:- meta_predicate remove_optional_char(//,?,?). + +:- meta_predicate sexpr_vector0(*,//,?,?). +:- meta_predicate with_all_rest_info(1). +:- meta_predicate with_lisp_translation_stream(*,1). +:- meta_predicate write_trans(+,*,2,?). + +%:- assert((s3xpr:'$exported_op'(_,_,_):- fail)). +%:- assert((xlisting:'$exported_op'(_,_,_):- fail)). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +def_is_characterp(CH):- current_predicate(is_characterp/1),!,call(call,is_characterp,CH). +def_is_characterp_def('#\\'(_)). + +def_to_prolog_string(I,O):- current_predicate(to_prolog_string/2),!,call(call,to_prolog_string,I,O). +def_to_prolog_string(I,O):- any_to_string(I,O). + + +def_compile_all(I,O):- current_predicate(compile_all/2),!,call(call,compile_all,I,O). +def_compile_all(I,O):- wdmsg(undefined_compile_all(I)),I=O. + + +zalwayzz(G):- call(G)*->true;throw(fail_zalwayzz(G)). +zalwayzz(G,I,O):- phrase(G,I,O)*->true;ignore(((ignore((append(I,[],Txt),name(Str,Txt))),throw(fail_zalwayzz(Str,G))))). + + +% DCG rules for S-expressions metta_with metta_whitespace and comments +s_expr_metta(List) --> metta_wspace,!, s_expr_metta(List). +s_expr_metta(List) --> `(`, !, items_metta(List, `)`). +s_expr_metta(['[...]',List]) --> `[`, !, items_metta(List, `]`). +s_expr_metta(['{...}',List]) --> `{`, !, items_metta(List, `}`). + + +items_metta([], Until) --> Until,!. +items_metta([Item|Rest], Until) --> s_item_metta(Item, dcg_peek(Until)), !, items_metta(Rest, Until). + +%s_line_metta(end_of_file) --> file_eof,!. +s_line_metta(Expr) --> metta_wspace, !, s_line_metta(Expr). +s_line_metta(exec(Expr)) --> `!`, !, s_item_metta(Expr, e_o_s). +s_line_metta(Expr) --> s_item_metta(Expr, e_o_s). + +%s_item_metta(end_of_file, _) --> file_eof,!. +s_item_metta(Expr, Until) --> metta_wspace, !, s_item_metta(Expr, Until). +%s_item_metta('Expr', Until) --> Until,!. +s_item_metta(List,_Until) --> s_expr_metta(List),!. +s_item_metta(String,_Until) --> string_metta(String),!. +s_item_metta(Symbol, Until) --> symbol_metta(Symbol, Until). + +:- encoding(iso_latin_1). +%string_metta(S) --> `"`, !, string_until_metta(S, `"`), {atomics_to_string_metta(A,S)}. +%string_metta(Text) --> `"`, !, zalmetta_wayzz_metta(string_until_metta(Text,`"`)),!. +%string_metta(Text) --> `“`, !, zalmetta_wayzz_metta(string_until_metta(Text,(`”`;`“`))),!. +string_metta(Text) --> (`"`), string_until_metta(L,(`"`)), {atomics_to_string(L,Text)}, !. +string_metta(Text) --> (`”`;`“`;`"`), !, string_until_metta(L,(`“`;`”`;`"`)), {atomics_to_string(L,Text)}. +:- encoding(utf8). +%string_metta(Text) --> `#|`, !, zalmetta_wayzz_metta(string_until_metta(Text,`|#`)),!. + +% string_until_metta([], _) --> e_o_s, !. +%string_until_metta([], _) --> file_eof,!. +string_until_metta([], Until) --> Until, !. +string_until_metta([C|Cs], Until) --> escape_sequence_metta(C), !, string_until_metta(Cs, Until). +string_until_metta([C|Cs], Until) --> [R], { name(C, [R]) }, string_until_metta(Cs, Until). + +escape_sequence_metta(Char) --> `\\`,[Esc], { escape_char_metta([Esc], Char) }. +escape_char_metta(`"`, "\""). +escape_char_metta(`\\`, "\\"). +escape_char_metta(`n`, "\n"). +escape_char_metta(`r`, "\r"). +escape_char_metta(`t`,"\t"). +escape_char_metta(C,S):- sformat(S,'~s',[[C]]). + +symbol_metta(S, Until) --> metta_wspace,!,symbol_metta(S, Until). +symbol_metta(S, Until) --> string_until_metta(SChars,(dcg_peek(metta_white); Until)), { atomic_list_concat(SChars, S) }. + +%comment --> `;`,!,comment_chars_metta(S). +comment_chars_metta(S) --> string_until_metta(SChars,`\n`), { atomic_list_concat(SChars, S) }. + +%e_o_s --> file_eof,!. +e_o_s --> \+ [_|_]. + +%metta_ws --> e_o_s,!. +metta_ws --> metta_wspace, !, metta_ws. +metta_ws --> []. +metta_wspace --> `;`,!, comment_chars_metta(S), {assert(comment_metta(S))}. +metta_wspace --> metta_white. +metta_white --> [W], { char_type(W, white) }, !. + + + +%:- meta_predicate(always(0)). +%always(G):- must(G). + +:- use_module(library(logicmoo/filestreams)). +%:- use_module(library(bugger)). + +:- if(exists_file('./header')). +% :- include('./header'). +:- endif. +%:- use_module(eightball). + +:- thread_local(t_l:sreader_options/2). +kif_ok:- t_l:sreader_options(logicmoo_read_kif,TF),!,TF==true. + +with_kif_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,true),G). + +with_kif_not_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,false),G). + + +:- meta_predicate((with_lisp_translation(+,1),input_to_forms_debug(+,:))). +:- meta_predicate sexpr_vector(*,//, + ?,?). + + +:- dynamic user:file_search_path/2. +:- multifile user:file_search_path/2. + +:- thread_local(t_l:s_reader_info/1). + +:- meta_predicate(quietly_sreader(0)). +%quietly_sreader(G):- quietly(G). +quietly_sreader(G):- !, call(G). + +%% with_lisp_translation( +FileOrStream, :Pred1) is det. +% +% With File or Stream read all S-expressions submitting each to Pred1 +% +with_lisp_translation(In,Pred1):- + is_stream(In),!,with_lisp_translation_stream(In,Pred1). +with_lisp_translation(Other,Pred1):- + setup_call_cleanup(l_open_input(Other,In), + with_lisp_translation_stream(In,Pred1), + ignore(notrace_catch_fail(close(In)))),!. + +with_lisp_translation_stream(In,Pred1):- + repeat, + once((lisp_read(In,O))), + (O== end_of_file + -> (with_all_rest_info(Pred1),!) ; + (((once((zalwayzz(call_proc(Pred1,O))))),fail))). + +call_proc(Pred1,O):- call(Pred1,O),!,with_all_rest_info(Pred1),!. + +with_all_rest_info(Pred1):- + forall(clause(t_l:s_reader_info(O2),_,Ref), + (zalwayzz(once(call(Pred1,O2))),erase(Ref))),!. + +parse_sexpr_untyped(I,O):- quietly_sreader((parse_sexpr(I,M))), + quietly_sreader((to_untyped(M,O))). + +read_pending_whitespace(In):- repeat, peek_char(In,Code), + (( \+ char_type(Code,space), \+ char_type(Code,white))-> ! ; (get_char(In,_),fail)). + + +make_tmpfile_name(Name,Temp):- + atomic_list_concat(List1,'/',Name),atomic_list_concat(List1,'_',Temp1), + atomic_list_concat(List2,'.',Temp1),atomic_list_concat(List2,'_',Temp2), + atomic_list_concat(List3,'\\',Temp2),atomic_list_concat(List3,'_',Temp3), + atom_concat_or_rtrace(Temp3,'.tmp',Temp),!. + + + + +:- meta_predicate(with_lisp_translation_cached(:,2,1)). +:- meta_predicate(maybe_cache_lisp_translation(+,+,2)). + +with_lisp_translation_cached(M:LFile,WithPart2,WithPart1):- + absolute_file_name(LFile,File), + make_tmpfile_name(LFile,Temp), + maybe_cache_lisp_translation(File,Temp,WithPart2),!, + finish_lisp_translation_cached(M,File,Temp,WithPart1). + +finish_lisp_translation_cached(M,File,Temp,WithPart1):- + multifile(M:lisp_trans/2), + dynamic(M:lisp_trans/2), + file_base_name(File,BaseName), + M:load_files([Temp],[qcompile(auto)]), + forall(M:lisp_trans(Part2,BaseName:Line), + once((b_setval('$lisp_translation_line',Line), + zalwayzz(M:call(WithPart1,Part2))))). + +maybe_cache_lisp_translation(File,Temp,_):- \+ file_needs_rebuilt(Temp,File),!. +maybe_cache_lisp_translation(File,Temp,WithPart2):- + file_base_name(File,BaseName), + setup_call_cleanup(open(Temp,write,Outs,[encoding(utf8)]), + must_det((format(Outs,'~N~q.~n',[:- multifile(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- dynamic(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- style_check(-singleton)]), + format(Outs,'~N~q.~n',[lisp_trans(translated(File,Temp,BaseName),BaseName:( -1))]), + with_lisp_translation(File,write_trans(Outs,BaseName,WithPart2)), + format(Outs,'~N~q.~n',[end_of_file]))), + ((ignore(notrace_catch_fail(flush_output(Outs),_,true)),ignore(notrace_catch_fail(close(Outs),_,true))))),!. + + +write_trans(Outs,File,WithPart2,Lisp):- + zalwayzz((call(WithPart2,Lisp,Part), + nb_current('$lisp_translation_line',Line), + format(Outs,'~N~q.~n',[lisp_trans(Part,File:Line)]))),!. + +/* alternate method*/ +phrase_from_stream_partial(Grammar, In):- + phrase_from_stream((Grammar,!,lazy_forgotten(In)), In). + +lazy_forgotten(In,UnUsed,UnUsed):- + (is_list(UnUsed)-> true ; append(UnUsed,[],UnUsed)), + length(UnUsed,PlzUnread), + seek(In, -PlzUnread, current, _). + + +% :- use_module(library(yall)). +% :- rtrace. +% tstl(I):- with_lisp_translation(I,([O]>>(writeq(O),nl))). +tstl(I):- with_kifvars(with_lisp_translation(I,writeqnl)). + +with_kifvars(Goal):- + locally(t_l:sreader_options(logicmoo_read_kif,true),Goal). + + + +%:- thread_local(t_l:fake_buffer_codes/2). + + +%% parse_sexpr( :TermS, -Expr) is det. +% +% Parse S-expression. +% + +parse_sexpr(S, Expr) :- quietly_sreader(parse_meta_term( + file_sexpr_with_comments, S, Expr)). + +%% parse_sexpr_ascii( +Codes, -Expr) is det. +% +% Parse S-expression Codes. +% +parse_sexpr_ascii(S, Expr) :- quietly_sreader(parse_meta_ascii(file_sexpr_with_comments, S,Expr)),!. + + +parse_sexpr_ascii_as_list(Text, Expr) :- txt_to_codes(Text,DCodes), + clean_fromt_ws(DCodes,Codes),!,append([`(`,Codes,`)`],NCodes),!, + phrase(sexpr_rest(Expr), NCodes, []). + + +%% parse_sexpr_string( +Codes, -Expr) is det. +% +% Parse S-expression That maybe sees string from Codes. +% +parse_sexpr_string(S,Expr):- + locally_setval('$maybe_string',t,parse_sexpr(string(S), Expr)),!. + +%% parse_sexpr_stream( +Stream, -Expr) is det. +% +% Parse S-expression from a Stream +% +parse_sexpr_stream(S,Expr):- quietly_sreader(parse_meta_stream(file_sexpr_with_comments,S,Expr)),!. + +:- export('//'(file_sexpr,1)). +:- export('//'(sexpr,1)). + +% for offline use of this lisp reader +intern_and_eval(UTC,V):- current_predicate(lisp_compiled_eval/2),!, + call(call,(reader_intern_symbols(UTC,M),!,lisp_compiled_eval(M,V))). +intern_and_eval(UTC,'$intern_and_eval'(UTC)). + +% Use DCG for parser. + +%file_sexpr_with_comments(O) --> [], {clause(t_l:s_reader_info(O),_,Ref),erase(Ref)},!. + + +file_sexpr_with_comments(end_of_file) --> file_eof,!. +file_sexpr_with_comments(O) --> one_blank,!,file_sexpr_with_comments(O),!. % WANT? +file_sexpr_with_comments(end_of_file) --> `:EOF`,!. +file_sexpr_with_comments(C) --> dcg_peek(`#|`),!,zalwayzz(comment_expr(C)),swhite,!. +file_sexpr_with_comments(C) --> dcg_peek(`;`),!, zalwayzz(comment_expr(C)),swhite,!. + + +file_sexpr_with_comments(Out) --> {kif_ok}, prolog_expr_next, prolog_readable_term(Out), !. +file_sexpr_with_comments(Out,S,E):- \+ t_l:sreader_options(with_text,true),!,phrase(file_sexpr(Out),S,E),!. +file_sexpr_with_comments(Out,S,E):- expr_with_text(Out,file_sexpr(O),O,S,E),!. + +prolog_expr_next--> dcg_peek(`:-`). +prolog_expr_next--> dcg_peek(read_string_until(S,(eol;`.`))),{atom_contains(S,':-')}. +prolog_expr_next--> dcg_peek(`.{`). + +prolog_readable_term(Expr) --> `.`,prolog_readable_term(Read), {arg(1,Read,Expr),!}. +prolog_readable_term(Expr,S,E):- + notrace(catch((read_term_from_codes(S,Expr,[subterm_positions(FromTo),cycles(true), module( baseKB), + double_quotes(string), + comments(CMT), variable_names(Vars)]),implode_threse_vars(Vars), + arg(2,FromTo,To), length(TermCodes,To), + append(TermCodes,Remaining,S), + `.`=[Dot],(Remaining=[Dot|E]/*;Remaining=E*/),!, + must(record_plterm_comments(CMT))),_,fail)). +record_plterm_comments(L):- is_list(L),!,maplist(record_plterm_comments,L). +record_plterm_comments(_-CMT):- assert(t_l:s_reader_info(CMT)). + + +% in Cyc there was a fitness heuristic that every time an logical axiom had a generated a unique consequent it was considered to have utility as it would expand the breadth of a search .. the problem often was those consequents would feed a another axiom's antecedant where that +:- asserta((system:'$and'(X,Y):- (X,Y))). + +%expr_with_text(Out,DCG,O,S,E):- +% call(DCG,S,E) -> append(S,Some,E) -> get_sexpr_with_comments(O,Some,Out,S,E),!. + +get_sexpr_with_comments(O,_,O,_,_):- compound(O),functor(O,'$COMMENT',_),!. +get_sexpr_with_comments(O,Txt,with_text(O,Str),S,_E):-append(Txt,_,S),!,text_to_string(Txt,Str). +%file_sexpr_with_comments(O,with_text(O,Txt),S,E):- copy_until_tail(S,Copy),text_to_string_safe(Copy,Txt),!. + + +file_sexpr(end_of_file) --> file_eof,!. +% WANT? +file_sexpr(O) --> sblank,!,file_sexpr(O),!. +% file_sexpr(planStepLPG(Name,Expr,Value)) --> swhite,sym_or_num(Name),`:`,swhite, sexpr(Expr),swhite, `[`,sym_or_num(Value),`]`,swhite. % 0.0003: (PICK-UP ANDY IBM-R30 CS-LOUNGE) [0.1000] +% file_sexpr(Term,Left,Right):- eoln(EOL),append(LLeft,[46,EOL|Right],Left),read_term_from_codes(LLeft,Term,[double_quotes(string)]),!. +% file_sexpr(Term,Left,Right):- append(LLeft,[46|Right],Left), ( \+ member(46,Right)),read_term_from_codes(LLeft,Term,[double_quotes(string)]),!. + +%file_sexpr(C) --> !, s_line_metta(C), !. +file_sexpr(Expr) --> sexpr(Expr),!. +% file_sexpr(Expr,H,T):- lisp_dump_break,rtrace(phrase(file_sexpr(Expr), H,T)). +/* +file_sexpr(Expr) --> {fail}, + sexpr_lazy_list_character_count(Location,Stream), + {break, + seek(Stream,Location,bof,_), + read_clause(Stream,Expr,[cycles(true),double_quotes(string),variable_names(Vars)]), + implode_threse_vars(Vars)},!. + +file_sexpr(Expr) --> sexpr(Expr),!. + +file_sexpr(end_of_file) --> []. +*/ +% file_sexpr('$ERROR'(S_EOF)) --> read_until_eof_e(Unitl_EOF),!,{sformat(S_EOF,'~s',[Unitl_EOF])}. +% read_until_eof_e(Unitl_EOF,S,E):- append(S,E,Unitl_EOF),break,is_list(Unitl_EOF),!. + +%read_dispatch(E,[Disp,Char|In],Out):- read_dispatch_char([Disp,Char],E,In,Out). +read_dispatch(E,[DispatCH|In],Out):- read_dispatch_char([DispatCH],E,In,Out). + +read_dispatch_char(DispatCH,Form,In,Out):- sread_dyn:plugin_read_dispatch_char(DispatCH,Form,In,Out),!. +% read_dispatch_char(`@`,Form,In,Out):- phrase(sexpr(Form), In, Out),!. + +read_dispatch_error(Form,In,Out):- trace, dumpST,trace_or_throw((read_dispatch_error(Form,In,Out))). + + + + +:- multifile(sread_dyn:plugin_read_dispatch_char/4). +:- dynamic(sread_dyn:plugin_read_dispatch_char/4). + +:- use_module(library(dcg/basics)). + +% #x Hex +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),(phrase((`-`,dcg_basics:xinteger(FormP)), In, Out)),!,Form is -FormP. + +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),!,zalwayzz(phrase(dcg_basics:xinteger(Form), In, Out)),!. + +% #B Binary +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Bb`),!,phrase(signed_radix_2(2,Form), In, Out),!. + +% #O Octal +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Oo`),!,phrase(signed_radix_2(8,Form), In, Out),!. + +signed_radix_2(W,V)--> signed_radix_2_noext(W,Number),extend_radix(W,Number,V). + +signed_radix_2_noext(W,Number) --> `-`,!,unsigned_radix_2(W,NumberP),{Number is - NumberP },!. +signed_radix_2_noext(W,Number) --> `+`,!,unsigned_radix_2(W,Number). +signed_radix_2_noext(W,Number) --> unsigned_radix_2(W,Number). + +unsigned_radix_2(W,Number) --> radix_digits(W,Xs),!,{mkvar_w(Xs,W,Number)},!. + + +radix(Radix)-->`#`,integer(Radix),ci(`r`). +radix(16)-->`#`,ci(`X`). +radix(8)-->`#`,ci(`O`). +radix(2)-->`#`,ci(`B`). + +signed_radix_number(V)--> radix(Radix),!,signed_radix_2(Radix,V). +unsigned_radix_number(V)--> radix(Radix),!,unsigned_radix_2(Radix,V). + +extend_radix(Radix,Number0,'$RATIO'(Number0,Number1)) --> `/`,unsigned_radix_2(Radix,Number1). +%extend_radix(Radix,Number0,'/'(NumberB,Number1)) --> `.`,radix_number(Radix,Number1),{NumberB is (Number0*Number1)+1},!. +%extend_radix(Radix,Number0,'/'(NumberB,NumberR)) --> `.`,radix_number(Radix,Number1),{NumberR is Number1 * Radix, NumberB is (Number0*Number1)+1},!. +extend_radix(_Radix,Number,Number) --> []. + +radix_digits(OF,[X|Xs]) --> xdigit(X),{X alpha_to_lower(C),{X is C - 87,X []. + + + +mkvar_w([W0|Weights], Base, Val) :- + mkvar_w(Weights, Base, W0, Val). + +mkvar_w([], _, W, W). +mkvar_w([H|T], Base, W0, W) :- + W1 is W0*Base+(H), + mkvar_w(T, Base, W1, W). + + +ci([])--> !, []. +ci([U|Xs]) --> {to_lower(U,X)},!,alpha_to_lower(X),ci(Xs). + + +remove_optional_char(S)--> S,!. +remove_optional_char(_)-->[]. + +implode_threse_vars([N='$VAR'(N)|Vars]):-!, implode_threse_vars(Vars). +implode_threse_vars([]). + +ugly_sexpr_cont('$OBJ'([S|V])) --> rsymbol_maybe(``,S), sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> read_string_until_pairs(VS,`>`), swhite,{parse_sexpr_ascii_as_list(VS,V)},!. +ugly_sexpr_cont('$OBJ'(sugly,S)) --> read_string_until(S,`>`), swhite,!. + +%% sexpr(L)// is det. +% + +%sexpr(L) --> sblank,!,sexpr(L),!. +%sexpr(_) --> `)`,!,{trace,break,throw_reader_error(": an object cannot start with #\\)")}. +sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(wdmsg(sexpr(X))))),!. +%sexpr(X,H,T):- zalwayzz(sexpr0(X,H,T)),!,swhite. +is_common_lisp:- fail. + +sexpr0(L) --> sblank,!,sexpr(L),!. +sexpr0(L) --> `(`, !, swhite, zalwayzz(sexpr_list(L)),!, swhite. +sexpr0((Expr)) --> `.{`, read_string_until(S,`}.`), swhite, + {prolog_readable_term(Expr,S,_)}. + + +sexpr0(['#'(quote),E]) --> `'`, !, sexpr(E). +sexpr0(['#'(hbackquote),E]) --> {is_scm}, `#```, !, sexpr(E). +sexpr0(['#'(backquote),E]) --> ````, !, sexpr(E). +sexpr0(['#BQ-COMMA-ELIPSE',E]) --> `,@`, !, sexpr(E). +sexpr0(['#COMMA',E]) --> { is_common_lisp }, `,`, !, sexpr(E). +sexpr0(['#HCOMMA',E]) --> {is_scm}, `#,`, !, sexpr(E). +sexpr0('$OBJ'(claz_bracket_vector,V)) --> `[`, sexpr_vector(V,`]`),!, swhite. + +% MeTTA/NARS % sexpr0('#'(A)) --> `|`, !, read_string_until(S,`|`), swhite,{quietly_sreader(((atom_string(A,S))))}. + +% maybe this is KIF +sexpr0('?'(E)) --> {kif_ok}, `?`, dcg_peek(([C],{sym_char(C)})),!, rsymbol(``,E), swhite. +% @TODO if KIF sexpr('#'(E)) --> `&%`, !, rsymbol(`#$`,E), swhite. + +sexpr0('$STRING'(S)) --> s_string(S),!. + +/******** BEGIN HASH ************/ + +sexpr0('#') --> `#`, swhite,!. +sexpr0('#\\'(35)) --> `#\\#`,!, swhite. +sexpr0(E) --> `#`,read_dispatch(E),!. + + +%sexpr('#\\'(C)) --> `#\\`,ci(`u`),!,remove_optional_char(`+`),dcg_basics:xinteger(C),!. +%sexpr('#\\'(C)) --> `#\\`,dcg_basics:digit(S0), swhite,!,{atom_codes(C,[S0])}. +sexpr0('#\\'(32)) --> `#\\ `,!. +sexpr0('#\\'(C)) --> `#\\`,!,zalwayzz(rsymbol(``,C)), swhite. + +%sexpr(['#-',K,Out]) --> `#-`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. +%sexpr(['#+',K,Out]) --> `#+`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. + +sexpr0(['#-',K,O]) --> `#-`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. +sexpr0(['#+',K,O]) --> `#+`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. + +:- if(is_wam_cl). + sexpr0(P) --> `#`,ci(`p`),!,zalwayzz((sexpr(C),{f_pathname(C,P)})),!. +:- endif. +sexpr0('$S'(C)) --> (`#`, ci(`s`),`(`),!,zalwayzz(sexpr_list(C)),swhite,!. +%sexpr('$COMPLEX'(R,I)) --> `#`,ci(`c`),`(`,!, lnumber(R),lnumber(I),`)`. +sexpr0('$COMPLEX'(R,I)) --> (`#`, ci(`c`),`(`),!,zalwayzz(sexpr_list([R,I])),swhite,!. +sexpr0('$OBJ'(claz_bitvector,C)) --> `#*`,radix_digits(2,C),swhite,!. + +sexpr0(function(E)) --> `#\'`, sexpr(E), !. %, swhite. +sexpr0('$OBJ'(claz_vector,V)) --> `#(`, !, zalwayzz(sexpr_vector(V,`)`)),!, swhite,!. + +sexpr0(Number) --> `#`,integer(Radix),ci(`r`),!,zalwayzz((signed_radix_2(Radix,Number0),extend_radix(Radix,Number0,Number))),!. +sexpr0('$ARRAY'(Dims,V)) --> `#`,integer(Dims),ci(`a`),!,sexpr(V). +sexpr0(V) --> `#.`, !,sexpr(C),{to_untyped(C,UTC),!,intern_and_eval(UTC,V)},!. +sexpr0('#'(E)) --> `#:`, !,zalwayzz(rsymbol(`#:`,E)), swhite. + +sexpr0(OBJ)--> `#<`,!,zalwayzz(ugly_sexpr_cont(OBJ)),!. + +% @TODO if CYC sexpr('#'(E)) --> `#$`, !, rsymbol(`#$`,E), swhite. +% @TODO if scheme sexpr('#'(t)) --> `#t`, !, swhite. +% @TODO if schemesexpr('#'(f)) --> `#f`, !, swhite. + +% sexpr(E) --> `#`,read_dispatch_error(E). + +/*********END HASH ***********/ + +sexpr0(E) --> sym_or_num(E), swhite,!. +sexpr0(Sym) --> `#`,integer(N123), swhite,!, {atom_concat('#',N123,Sym)}. +sexpr0(C) --> s_line_metta(C) , !. %s_line_metta(C), !. +sexpr0(C) --> s_item_metta(C, e_o_s). %s_line_metta(C), !. +sexpr0(E) --> !,zalwayzz(sym_or_num(E)), swhite,!. + +is_scm:- fail. + +% c:/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/guile/module/ice-9/and-let-star.scm + +priority_symbol((`|-`)). +priority_symbol((`#=`)). +priority_symbol((`#+`)). +priority_symbol((`#-`)). +priority_symbol((`#false`)). +priority_symbol((`#true`)). +priority_symbol((`#nil`)). +priority_symbol((`#null`)). +priority_symbol((`#f`)). +priority_symbol((`#;`)):- is_scm. +priority_symbol((`#t`)). +priority_symbol((`+1+`)). +priority_symbol((`+1-`)). +priority_symbol((`-#+`)). +priority_symbol((`-1+`)). +priority_symbol((`-1-`)). +priority_symbol((`1+`)). +priority_symbol((`1-`)). + +sym_or_num('$COMPLEX'(L)) --> `#C(`,!, swhite, sexpr_list(L), swhite. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. + +sym_or_num((E)) --> lnumber(E),swhite,!. +sym_or_num(E) --> rsymbol_maybe(``,E),!. +%sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. + + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. +% sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + + +dcg_xor(DCG1,DCG2,S,E):- copy_term(DCG1,DCG1C),phrase(DCG1C,S,E),!, + (phrase(DCG2,S,[])->true;zalwayzz(DCG1C=DCG1)),!. +dcg_xor(_,DCG2,S,E):- phrase(DCG2,S,E),!. +%sblank --> [C], {var(C)},!. + +% sblank --> comment_expr(S,I,CP),!,{assert(t_l:s_reader_info('$COMMENT'(S,I,CP)))},!,swhite. +sblank --> comment_expr(CMT),!,{assert(t_l:s_reader_info(CMT))},!,swhite. +sblank --> [C], {nonvar(C),charvar(C),!,bx(C =< 32)},!,swhite. + +sblank_line --> eoln,!. +sblank_line --> [C],{bx(C =< 32)},!, sblank_line. + +s_string(Text) --> sexpr_string(Text). +s_string(Text) --> {kif_ok},`'`, !, zalwayzz(read_string_until(Text,`'`)),!. + + + +swhite --> sblank,!. +swhite --> []. + + +sexpr_lazy_list_character_count(Location, Stream, Here, Here) :- + sexpr_lazy_list_character_count(Here, Location, Stream). + +sexpr_lazy_list_character_count(Here, CharNo, Stream) :- + '$skip_list'(Skipped, Here, Tail), + ( attvar(Tail) + -> frozen(Tail, + pure_input:read_to_input_stream(Stream, _PrevPos, Pos, _List)), + stream_position_data(char_count, Pos, EndRecordCharNo), + CharNo is EndRecordCharNo - Skipped + ; Tail == [] + -> CharNo = end_of_file-Skipped + ; type_error(lazy_list, Here) + ). + + + +comment_expr('$COMMENT'(Expr,I,CP)) --> comment_expr_3(Expr,I,CP),!. + +comment_expr_3(T,N,CharPOS) --> {\+ kif_ok}, `#|`, !, my_lazy_list_location(file(_,_,N,CharPOS)),!, zalwayzz(read_string_until_no_esc(S,`|#`)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> `;`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> {kif_ok}, `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +% For Scheme +comment_expr_3(T,N,CharPOS) --> `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,`!#`)),!, + {text_to_string_safe(S,T)},!. + + +sexprs([H|T]) --> sexpr(H), !, sexprs(T). +sexprs([]) --> []. + + +:- export('//'(sexpr_list,1)). + + +peek_symbol_breaker_or_number --> dcg_peek([C]),{\+ sym_char(C),\+ char_type(C,digit)}. +peek_symbol_breaker --> dcg_peek([C]),{\+ sym_char(C)}. +peek_symbol_breaker --> one_blank. + +sexpr_list(X) --> one_blank,!,sexpr_list(X). +sexpr_list([]) --> `)`, !. +%sexpr_list(_) --> `.`, [C], {\+ sym_char(C)}, {fail}. +sexpr_list([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_rest([]) --> `)`, !. +sexpr_rest(E) --> `.`, [C], {\+ sym_char(C)}, !, sexpr(E,C), !, `)`. +sexpr_rest(E) --> {kif_ok}, `@`, rsymbol(`?`,E), `)`. +sexpr_rest([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_vector(O,End) --> zalwayzz(sexpr_vector0(IO,End)),!,{zalwayzz(O=IO)}. + +sexpr_vector0(X) --> one_blank,!,sexpr_vector0(X). +sexpr_vector0([],End) --> End, !. +sexpr_vector0([First|Rest],End) --> sexpr(First), !, sexpr_vector0(Rest,End). + +%s_string_cont(Until,"") --> Until,!, swhite. +:- encoding(iso_latin_1). +sexpr_string(Text) --> `"`, !, zalwayzz(read_string_until(Text,`"`)),!. +sexpr_string(Text) --> `“`, !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> (`”`;`“`), !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> `#|`, !, zalwayzz(read_string_until(Text,`|#`)),!. +:- encoding(utf8). +%sexpr_string([C|S],End) --> `\\`,!, zalwayzz(escaped_char(C)),!, sexpr_string(S,End). +%sexpr_string([],End) --> End, !. +% sexpr_string([32|S]) --> [C],{eoln(C)}, sexpr_string(S). +%sexpr_string([C|S],End) --> [C],!,sexpr_string(S,End). + +rsymbol_chars([C1,C2|Rest]) --> [C1,C2], {priority_symbol([C1,C2|Rest])},Rest,!. +rsymbol_chars([C|S])--> [C], {sym_char(C)},!, sym_continue(S),!. +%rsymbol_cont(Prepend,E) --> sym_continue(S), {append(Prepend,S,AChars),string_to_atom(AChars,E)},!. + +rsymbol(Chars,E) --> rsymbol_chars(List), {append(Chars,List,AChars),string_to_atom(AChars,E)},!. + +rsymbol_maybe(Prepend,ES) --> rsymbol(Prepend,E),{maybe_string(E,ES)},!. + +maybe_string(E,ES):- nb_current('$maybe_string',t),!,text_to_string_safe(E,ES),!. +maybe_string(E,E). + +sym_continue([H|T]) --> [H], {sym_char(H)},!, sym_continue(T). +sym_continue([39]) --> `'`, peek_symbol_breaker,!. +sym_continue([]) --> peek_symbol_breaker,!. +sym_continue([]) --> []. + +string_vector([First|Rest]) --> sexpr(First), !, string_vector(Rest),!. +string_vector([]) --> [], !. + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + +lnumber(_)--> [C],{code_type(C,alpha)},!,{fail}. +lnumber(N)--> lnumber0(N),!. % (peek_symbol_breaker;[]). + +oneof_ci(OneOf,[C])--> {member(C,OneOf)},ci([C]). +dcg_and2(DCG1,DCG2,S,E) :- dcg_phrase(DCG1,S,E),!,dcg_phrase(DCG2,S,E),!. +dcg_each_call_cleanup(Setup,DCG,Cleanup,S,E) :- each_call_cleanup(Setup,dcg_phrase(DCG,S,E),Cleanup). +dcg_phrase(\+ DCG1,S,E):- !, \+ phrase(DCG1,S,E). +dcg_phrase(DCG1,S,E):- phrase(DCG1,S,E),!. + +dcg_not(DCG1,S,E) :- \+ dcg_phrase(DCG1,S,E). + +enumber(N)--> lnumber(L),!,{to_untyped(L,N)},!. + +/* +Format Minimum Precision Minimum Exponent Size +Short 13 bits 5 bits +Single 24 bits 8 bits +Double 50 bits 8 bits +Long 50 bits 8 bits +*/ + +float_e_type(`E`,claz_single_float). +float_e_type(`f`,claz_single_float). +float_e_type(`d`,claz_double_float). +float_e_type(`L`,claz_long_float). +float_e_type(`s`,claz_short_float). + +lnumber_exp('$EXP'(N,T,E))-->snumber_no_exp(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),{exp:float_e_type(TC,T)},!. +lnumber_exp('$EXP'(N,T,E))-->dcg_basics:integer(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),!,{float_e_type(TC,T)},!. + + +lnumber0(N) --> lnumber_exp(N),!. +lnumber0('$RATIO'(N,D)) --> sint(N),`/`,uint(D),!. +lnumber0(N) --> snumber_no_exp(N),!. +%lnumber0(N) --> dcg_basics:number(N),!. + + +snumber_no_exp(N)--> `-`,!,unumber_no_exp(S),{N is -S},!. +snumber_no_exp(N)--> `+`,!,unumber_no_exp(N),!. +snumber_no_exp(N)--> unumber_no_exp(N),!. +%snumber_no_exp(N)--> sint(N),!. + + +sint(N) --> signed_radix_number(N),!. +sint(N)--> `-`,!,uint(S),{N is -S},!. +sint(N)--> `+`,!,uint(N),!. +sint(N)--> uint(N),!. + +natural_int(_) --> dcg_not(dcg_basics:digit(_)),!,{fail}. +natural_int(N) --> dcg_basics:integer(N),!. + +digits_dot_digits --> natural_int(_),!,`.`,!,natural_int(_),!. + +unumber_no_exp(N) --> dcg_and2(digits_dot_digits,dcg_basics:float(N)),!. +unumber_no_exp(N) --> `.`,!,dcg_basics:digit(S0),!,dcg_basics:digits(S),{(notrace_catch_fail(number_codes(N,[48,46,S0|S])))},!. +unumber_no_exp(N)--> natural_int(E),`.`,natural_int(S),{(notrace_catch_fail(number_codes(ND,[48,46|S]))),N is ND + E},!. +unumber_no_exp(N) --> natural_int(N),!,remove_optional_char(`.`),!. + +uint(N) --> unsigned_radix_number(N),!. +uint(N) --> natural_int(N),!,remove_optional_char(`.`),!. + + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + + +%= + +%% sexpr( ?E, ?C, ?X, ?Z) is det. +% +% S-Expression. +% +sexpr(E,C,X,Z) :- swhite([C|X],Y), sexpr(E,Y,Z),!. + +% dquote semicolon parens hash qquote comma backquote + +%= + +%% sym_char( ?C) is det. +% +% Sym Char. (not ";()#',` +% ) +% + +sym_char(C):- bx(C =< 32),!,fail. +%sym_char(44). % allow comma in middle of symbol +sym_char(C):- memberchk(C,`"()```),!,fail. % maybe 44 ? comma maybe not # or ; ? ' +%sym_char(C):- nb_current('$maybe_string',t),memberchk(C,`,.:;!%`),!,fail. +sym_char(_):- !. + +sym_char_start(C):- C\==44,C\==59,sym_char(C). + + + +:- thread_initialization(nb_setval('$maybe_string',[])). + +:- thread_local(t_l:s2p/1). +:- thread_local(t_l:each_file_term/1). + + + +%= + +%% to_unbackquote( ?I, ?O) is det. +% +% Converted To Unbackquote. +% +to_unbackquote(I,O):-to_untyped(I,O),!. + +:- export(to_untyped/2). + + +%atom_or_string(X):- (atom(X);string(X)),!. +as_keyword(C,K):- atom(C),!,(atom_concat_or_rtrace(':',_,C)->K=C;atom_concat_or_rtrace(':',C,K)),!. +as_keyword(C,C):- \+compound(C),!. +as_keyword([A|B],[AK|BK]):- !, as_keyword(A,AK),as_keyword(B,BK),!. +as_keyword(C,C). + + +%% to_untyped( :TermVar, :TermName) is det. +% +% Converted To Untyped. +% +to_untyped(S,S):- var(S),!. +to_untyped(S,S):- is_dict(S),!. +to_untyped([],[]):-!. +to_untyped('#-'(C,I),'#-'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('#+'(C,I),'#+'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('?'(S),_):- S=='??',!. +% to_untyped('?'(S),'$VAR'('_')):- S=='??',!. +% to_untyped(VAR,NameU):-atom(VAR),atom_concat_or_rtrace('#$',NameU,VAR),!. +to_untyped(VAR,NameU):-atom(VAR),(atom_concat_or_rtrace(N,'.',VAR)->true;N=VAR),(notrace_catch_fail(atom_number(N,NameU))),!. +%to_untyped(S,s(L)):- string(S),atom_contains(S,' '),atomic_list_concat(['(',S,')'],O),parse_sexpr_string(O,L),!. +to_untyped(S,S):- string(S),!. +to_untyped(S,S):- number(S),!. +%to_untyped(S,O):- atom(S),notrace_catch_fail(atom_number(S,O)),!. +to_untyped(Var,'$VAR'(Name)):-svar(Var,Name),!. +to_untyped('?'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped(Atom,Atom):- \+ compound(Atom),!. +to_untyped('@'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped('#'(S),O):- !, (nonvar(S)->to_untyped(S,O) ; O='#'(S)). +to_untyped('$CHAR'(S),C):-!,to_untyped('#\\'(S),C),!. +to_untyped('#\\'(S),C):-to_char(S,C),!. +to_untyped('#\\'(S),'#\\'(S)):-!. +to_untyped('$OBJ'([FUN, F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'([FUN| F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'(S),'$OBJ'(O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Type,O)):- text_to_string_safe(Ungly,Str),string_to_atom(Str,Type),to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Ungly,O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),O):-to_untyped(S,SO),!,O=..[Ungly,SO]. +to_untyped('$COMPLEX'(N0,D0),N):- to_untyped(D0,D), notrace_catch_fail(( 0 =:= D)),to_untyped(N0,N). +to_untyped('$RATIO'(N0,D0),V):- to_untyped(N0,N),to_untyped(D0,D), notrace_catch_fail(( 0 is N mod D, V is N div D)). +to_untyped('$NUMBER'(S),O):-nonvar(S),to_number(S,O),to_untyped(S,O),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_short_float,S)):- float(S),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_bignum,S)). +to_untyped('$EXP'(I,'E',E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,claz_single_float,E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,T,E),'$NUMBER'(T,N)):- (notrace_catch_fail(N is (I * 10^E))),!. +to_untyped('$EXP'(I,T,E),'$EXP'(I,T,E)):-!. + +to_untyped(with_text(I,_Txt),O):-to_untyped(I,O),!. +to_untyped(with_text(I,Txt),with_text(O,Txt)):-to_untyped(I,O),!. + +% to_untyped([[]],[]):-!. +to_untyped('$STR'(Expr),Forms):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped('$STRING'(Expr),'$STRING'(Forms)):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped(['#'(Backquote),Rest],Out):- is_common_lisp, Backquote == backquote, !,to_untyped(['#'('#BQ'),Rest],Out). +to_untyped(['#'(S)|Rest],OOut):- nonvar(S), is_list(Rest),must_maplist(to_untyped,[S|Rest],[F|Mid]), + ((atom(F),t_l:s2p(F))-> Out=..[F|Mid];Out=[F|Mid]), + to_untyped(Out,OOut). +to_untyped(ExprI,ExprO):- ExprI=..[F|Expr],atom_concat_or_rtrace('$',_,F),!,must_maplist(to_untyped,Expr,TT),ExprO=..[F|TT]. + +% to_untyped([H|T],Forms):-is_list([H|T]),zalwayzz(text_to_string_safe([H|T],Forms);maplist(to_untyped,[H|T],Forms)). +to_untyped([H|T],[HH|TT]):-!,zalwayzz((to_untyped(H,HH),!,to_untyped(T,TT))). +to_untyped(ExprI,ExprO):- zalwayzz(ExprI=..Expr), + must_maplist(to_untyped,Expr,[HH|TT]),(atom(HH)-> ExprO=..[HH|TT] ; ExprO=[HH|TT]),!. +% to_untyped(Expr,Forms):-def_compile_all(Expr,Forms),!. + +to_number(S,S):-number(S),!. +to_number(S,N):- text_to_string_safe(S,Str),number_string(N,Str),!. + + +to_char(S,'#\\'(S)):- var(S),!. +to_char('#'(S),C):- !, to_char(S,C). +to_char('#\\'(S),C):- !, to_char(S,C). +to_char(S,C):- atom(S),atom_concat('^',SS,S),upcase_atom(SS,SU),atom_codes(SU,[N64]),N is N64-64,N>=0,!,to_char(N,C). +to_char(S,C):- atom(S),atom_codes(S,[N]),!,to_char(N,C). +to_char(N,C):- text_to_string_safe(N,Str),name_to_charcode(Str,Code),to_char(Code,C),!. +%to_char(N,'#\\'(S)):- to_number(N,NC),!,char_code_to_char(NC,S),!. +to_char(N,'#\\'(S)):- integer(N),!,char_code_to_char(N,S),!. +to_char(N,'#\\'(N)). + +char_code_int(Char,Code):- notrace_catch_fail(char_code(Char,Code)),!. +char_code_int(Char,Code):- notrace_catch_fail(atom_codes(Char,[Code])),!. +char_code_int(Char,Code):- atom(Char),name_to_charcode(Char,Code),!. +char_code_int(Char,Code):- var(Char),!,wdmsg(char_code_int(Char,Code)), only_debug(break). +char_code_int(Char,Code):- wdmsg(char_code_int(Char,Code)),only_debug(break). + +char_code_to_char(N,S):- atom(N),atom_codes(N,[_]),!,S=N. +char_code_to_char(N,S):- atom(N),!,S=N. +%char_code_to_char(N,S):- code_type(N,graph),atom_codes(S,[N]),atom(S),!. +%char_code_to_char(N,O):- \+ integer(N),char_type(N,_),!,N=O. +%char_code_to_char(32,' '):-!. +%char_code_to_char(N,N):- \+ code_type(N,graph),!. +%char_code_to_char(N,N):- code_type(N,white),!. +char_code_to_char(N,S):- notrace_catch_fail(atom_codes(S,[N])),!. + + + +name_to_charcode(Str,Code):-find_from_name(Str,Code),!. +name_to_charcode(Str,Code):-text_upper(Str,StrU),find_from_name2(StrU,Code). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1,H2,H3,H4|HEX]),memberchk(S,`Uu`),char_type(H4,xdigit(_)), + notrace_catch_fail(read_from_codes([48, 120,H1,H2,H3,H4|HEX],Code)). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1|BASE10]),memberchk(S,`nd`),char_type(H1,digit), + notrace_catch_fail(read_from_codes([H1|BASE10],Code)). + +find_from_name(Str,Code):-string_codes(Str,Chars),lisp_code_name_extra(Code,Chars). +find_from_name(Str,Code):-lisp_code_name(Code,Str). +find_from_name(Str,Code):-string_chars(Str,Chars),lisp_code_name(Code,Chars). + +make_lisp_character(I,O):-quietly(to_char(I,O)). + +f_code_char(CH,CC):- zalwayzz(to_char(CH,CC)),!. +f_name_char(Name,CC):- zalwayzz((def_to_prolog_string(Name,CH),name_to_charcode(CH,Code),to_char(Code,CC))). +f_char_name(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz(code_to_name(CH,CC)). +f_char_int(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz('#\\'(C)=CH),(integer(C)->CC=C;char_code_int(C,CC)). +f_char_code(CH,CC):- f_char_int(CH,CC). + +to_prolog_char('#\\'(X),O):-!,to_prolog_char(X,O). +to_prolog_char(Code,Char):- number(Code),!,zalwayzz(char_code_int(Char,Code)),!. +%to_prolog_char(S,S):- atom(S),char_type(S,_),!. +to_prolog_char(Atom,Char):- name(Atom,[C|Odes]),!, + ((Odes==[] -> char_code_int(Char,C); + zalwayzz((text_to_string(Atom,String),name_to_charcode(String,Code),char_code_int(Char,Code))))). + +code_to_name(Char,Str):- number(Char),Char=Code,!,zalwayzz((code_to_name0(Code,Name),!,text_to_string(Name,Str))). +code_to_name(Char,Str):- zalwayzz((to_prolog_char(Char,PC),char_code_int(PC,Code),code_to_name0(Code,Name),!,text_to_string(Name,Str))). + +code_to_name0(Code,Name):-lisp_code_name_extra(Code,Name). +code_to_name0(Code,Name):-lisp_code_name(Code,Name). +code_to_name0(Code,Name):- Code<32, Ascii is Code+64,atom_codes(Name,[94,Ascii]). +code_to_name0(Code,Name):- code_type(Code,graph),!,atom_codes(Name,[Code]). + + +find_from_name2(Str,Code):-find_from_name(Str,Code). +find_from_name2(Str,Code):-lisp_code_name(Code,Chars),text_upper(Chars,Str). +find_from_name2(Str,Code):-lisp_code_name_extra(Code,Chars),text_upper(Chars,Str). + +text_upper(T,U):-text_to_string_safe(T,S),string_upper(S,U). + +lisp_code_name_extra(0,`Null`). +lisp_code_name_extra(1,`Soh`). +lisp_code_name_extra(2,`^B`). +lisp_code_name_extra(7,`Bell`). +lisp_code_name_extra(7,`bell`). +lisp_code_name_extra(8,`BCKSPC`). +lisp_code_name_extra(10,`Newline`). +lisp_code_name_extra(10,`LF`). +lisp_code_name_extra(10,`Linefeed`). +lisp_code_name_extra(11,`Vt`). +lisp_code_name_extra(27,`Escape`). +lisp_code_name_extra(27,`Esc`). +lisp_code_name_extra(32,`Space`). +lisp_code_name_extra(28,`fs`). +lisp_code_name_extra(13,`Ret`). + + +% @TODO undo this temp speedup +:- set_prolog_flag(all_lisp_char_names,false). +:- use_module('chars.data'). +/* + +(with-open-file (strm "lisp_code_names.pl" :direction :output :if-exists :supersede :if-does-not-exist :create) + (format strm ":- module(lisp_code_names,[lisp_code_name/2]).~%:- set_prolog_flag(double_quotes,chars).~%~%") + (loop for i from 0 to 655360 do (let ((cname (char-name (code-char i))) (uname4 (format () "U~4,'0X" i)) (uname8 (format () "U~8,'0X" i))) + (unless (equal cname uname4) (unless (equal cname uname8) (format strm "lisp_code_name(~A,~S).~%" i cname )))))) +*/ + + +%% remove_incompletes( :TermN, :TermCBefore) is det. +% +% Remove Incompletes. +% +remove_incompletes([],[]). +remove_incompletes([N=_|Before],CBefore):-var(N),!, + remove_incompletes(Before,CBefore). +remove_incompletes([NV|Before],[NV|CBefore]):- + remove_incompletes(Before,CBefore). + +:- export(extract_lvars/3). + +%= + +%% extract_lvars( ?A, ?B, ?After) is det. +% +% Extract Lvars. +% +extract_lvars(A,B,After):- + (get_varname_list(Before)->true;Before=[]), + remove_incompletes(Before,CBefore),!, + copy_lvars(A,CBefore,B,After),!. + +% copy_lvars( VAR,Vars,VAR,Vars):- var(VAR),!. + +%= + +%% copy_lvars( :TermVAR, ?Vars, :TermNV, ?NVars) is det. +% +% Copy Lvars. +% +copy_lvars(Term,Vars,Out,VarsO):- Term ==[],!,zalwayzz((Out=Term,VarsO=Vars)). +copy_lvars( VAR,Vars,Out,VarsO):- var(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars([H|T],Vars,[NH|NT],VarsO):- !, copy_lvars(H,Vars,NH,SVars),!, copy_lvars(T,SVars,NT,VarsO). +copy_lvars('?'(Inner),Vars,Out,VarsO):- !, copy_lvars(Inner,Vars,NInner,VarsO), zalwayzz((atom(NInner) -> atom_concat_or_rtrace('?',NInner,Out) ; Out = '?'(NInner))),!. +copy_lvars( VAR,Vars,Out,VarsO):- svar(VAR,Name)->zalwayzz(atom(Name)),!,zalwayzz(register_var(Name=Out,Vars,VarsO)). +copy_lvars( VAR,Vars,Out,VarsO):- \+ compound(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars(Term,Vars,NTerm,VarsO):- + Term=..[F|Args], % decompose term + (svar(F,_)-> copy_lvars( [F|Args],Vars,NTerm,VarsO); + % construct copy term + (copy_lvars(Args,Vars,NArgs,VarsO), NTerm=..[F|NArgs])),!. + + + +%= + +%% svar( ?Var, ?NameU) is det. +% +% If this is a KIF var, convert to a name for prolog +% +svar(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar(SVAR,UP)). +svar(Var,Name):- var(Var),!,zalwayzz(svar_fixvarname(Var,Name)). +svar('$VAR'(Var),Name):-number(Var),Var > -1, !, zalwayzz(format(atom(Name),'~w',['$VAR'(Var)])),!. +svar('$VAR'(Name),VarName):-!,zalwayzz(svar_fixvarname(Name,VarName)). +svar('?'(Name),NameU):-svar_fixvarname(Name,NameU),!. +svar(_,_):- \+ kif_ok,!,fail. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('?',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. +svar([],_):-!,fail. +svar('#'(Name),NameU):-!,svar(Name,NameU),!. +svar('@'(Name),NameU):-svar_fixvarname(Name,NameU),!. +% svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('_',_,VAR),svar_fixvarname(VAR,Name),!. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('@',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. + + +:- export(svar_fixvarname/2). + +%= + +%% svar_fixvarname( ?SVARIN, ?UP) is det. +% +% Svar Fixvarname. +% + +svar_fixvarname(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar_fixvarname(SVAR,UP)). +svar_fixvarname(SVAR,UP):- svar_fixname(SVAR,UP),!. +svar_fixvarname(SVAR,UP):- fail,trace_or_throw(svar_fixname(SVAR,UP)). + +svar_fixname(Var,NameO):-var(Var),!,variable_name_or_ref(Var,Name),sanity(nonvar(Name)),!,svar_fixvarname(Name,NameO). +svar_fixname('$VAR'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('@'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('?'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('block'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname(SVAR,SVARO):- ok_var_name(SVAR),!,SVARO=SVAR. +svar_fixname('??','_'):-!. +svar_fixname(QA,AU):-atom_concat_or_rtrace('??',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO),atom_concat_or_rtrace('_',AO,AU). +svar_fixname(QA,AO):-atom_concat_or_rtrace('?',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(QA,AO):-atom_concat_or_rtrace('@',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(NameU,NameU):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name),atom_number(Name,_),!. +svar_fixname(NameU,NameUO):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name), + \+ atom_number(Name,_),!,svar_fixvarname(Name,NameO),atom_concat_or_rtrace('_',NameO,NameUO). +svar_fixname(I,O):- + notrace(( + notrace(catch(fix_varcase(I,M0),_,fail)), + atom_subst(M0,'@','_AT_',M1), + atom_subst(M1,'?','_Q_',M2), + atom_subst(M2,':','_C_',M3), + atom_subst(M3,'-','_',O), + ok_var_name(O))),!. + +%= + +%% fix_varcase( ?I, ?O) is det. +% +% Fix Varcase. +% +fix_varcase(Word,Word):- atom_concat_or_rtrace('_',_,Word),!. +fix_varcase(Word,WordC):- !, atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +% the cut above stops the rest +fix_varcase(Word,Word):-upcase_atom(Word,UC),UC=Word,!. +fix_varcase(Word,WordC):-downcase_atom(Word,UC),UC=Word,!,atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +fix_varcase(Word,Word). % mixed case + +:- export(ok_varname_or_int/1). + +%% ok_varname_or_int( ?Name) is det. +% +% Ok Varname. +% +ok_varname_or_int(Name):- atom(Name),!,ok_var_name(Name). +ok_varname_or_int(Name):- number(Name). + +%% ok_var_name( ?Name) is det. +% +% Ok Varname. +% +ok_var_name(Name):- + notrace(( + quietly_sreader(( atom(Name),atom_codes(Name,[C|_List]),char_type(C,prolog_var_start), + notrace(catch(read_term_from_atom(Name,Term,[variable_names(Vs)]),_,fail)), + !,var(Term),Vs=[RName=RVAR],!,RVAR==Term,RName==Name)))). + +%:- export(ok_codes_in_varname/1). +%ok_codes_in_varname([]). +%ok_codes_in_varname([C|List]):-!,ok_in_varname(C),ok_codes_in_varname(List). + +%:- export(ok_in_varname/1). +%ok_in_varname(C):-sym_char(C),\+member(C,`!@#$%^&*?()`). + + + +%= + +%% atom_upper( ?A, ?U) is det. +% +% Atom Upper. +% +atom_upper(A,U):-string_upper(A,S),quietly_sreader(((atom_string(U,S)))). + + +%= + +%% lisp_read_from_input( ?Forms) is det. +% +% Lisp Read Converted From Input. +% +lisp_read_from_input(Forms):-lisp_read(current_input,Forms),!. + +readCycL(Forms):-lisp_read(current_input,Forms). + +%% lisp_read_from_stream( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read_from_stream(Input,Forms):- + lisp_read(Input,Forms). + + +%% lisp_read( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read(Input,Forms):- + lisp_read_typed(Input, Forms0),!, + quietly_sreader((zalwayzz(to_untyped(Forms0,Forms)))). + + + +%% lisp_read_typed( ?I, -Expr) is det. +% +% Lisp Read, Expression models DCG +% +lisp_read_typed(In,Expr):- track_stream(In,parse_sexpr(In,Expr)),!. +/* +lisp_read_typed(In,Expr):- fail, % old_stream_read + (read_line_to_codes(current_input,AsciiCodes), + (AsciiCodes==[]-> (at_end_of_stream(In) -> (Expr=end_of_file); lisp_read_typed(In,Expr)); + once(zalwayzz(parse_sexpr(AsciiCodes,Expr);lisp_read_typed(In,Expr));read_term_from_codes(AsciiCodes,Expr,[])))). +*/ + + +%= + +%% lowcase( :TermC1, :TermC2) is det. +% +% Lowcase. +% +lowcase([],[]). +lowcase([C1|T1],[C2|T2]) :- lowercase(C1,C2), lowcase(T1,T2). + + +%= + +%% lowercase( ?C1, ?C2) is det. +% +% Lowercase. +% +lowercase(C1,C2) :- C1 >= 65, C1 =< 90, !, C2 is C1+32. +lowercase(C,C). + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Interpretation + -------------- + + Declaratively, execution of a Lisp form is a relation between the + (function and variable) binding environment before its execution + and the environment after its execution. A Lisp program is a + sequence of Lisp forms, and its result is the sequence of their + results. The environment is represented as a pair of association + lists Fs-Vs, associating function names with argument names and + bodies, and variables with values. DCGs are used to implicitly + thread the environment state through. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + + +%= + +%% codelist_to_forms( ?AsciiCodesList, ?FormsOut) is det. +% +% Codelist Converted To Forms. +% +codelist_to_forms(AsciiCodesList,FormsOut):- + parse_sexpr(AsciiCodesList, Forms0),!, + zalwayzz(def_compile_all(Forms0, FormsOut)),!. + + +/* + +:- export(baseKB:rff/0). + +baseKB:rff:-baseKB:rff(dbginfo(n(first)),dbginfo(n(retry)),dbginfo(n(success)),dbginfo(n(failure))). + +:- export(baseKB:rff/4). +baseKB:rff(OnFirst,OnRetry,OnSuccess,OnFailure) :- CU = was(never,first), + call_cleanup(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + (nb_setarg(1,CU,first));((nb_setarg(1,CU,second)),!,fail)), + (nb_setarg(2,CU,second),process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure),dbginfo(cleanup(CU)))), + once(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + CU \= was(second, _))). + +:- export(process_rff/5). +process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure):- + dbginfo(next(CU)), + once(((CU==was(first,first)->OnFirst;true), + (CU==was(second,first)->OnRetry;true), + (CU==was(second,second)->OnFailure;true), + (CU==was(first,second)-e>OnSuccess;true))). + + +*/ + + +/* +:- prolog_load_context(directory,Dir), + DirFor = plarkc, + (( \+ user:file_search_path(DirFor,Dir)) ->asserta(user:file_search_path(DirFor,Dir));true), + absolute_file_name('../../../../',Y,[relative_to(Dir),file_type(directory)]), + (( \+ user:file_search_path(pack,Y)) ->asserta(user:file_search_path(pack,Y));true). +:- attach_packs. +:- initialization(attach_packs). +*/ + +% [Required] Load the Logicmoo Library Utils +% = % :- ensure_loaded(logicmoo(logicmoo_utils)). + +% % :- ensure_loaded(logicmoo(plarkc/mpred_cyc_api)). + + +:- export(fixvars/4). + +%= + +%% fixvars( ?P, ?VALUE2, :TermARG3, ?P) is det. +% +% Fixvars. +% +fixvars(P,_,[],P):-!. +fixvars(P,N,[V|VARS],PO):- + quietly_sreader((atom_string(Name,V))), + svar_fixvarname(Name,NB),Var = '$VAR'(NB), + substM(P,'$VAR'(N),Var,PM0), + substM(PM0,'$VAR'(Name),Var,PM), + % (get_varname_list(Vs)->true;Vs=[]), + % append(Vs,[Name=Var],NVs), + % nput_variable_names( NVs), + N2 is N + 1, fixvars(PM,N2,VARS,PO). + + + + +non_empty_atom(A1):- atom(A1),atom_length(A1,AL),!,AL>0. + +:- meta_predicate(sexpr_sterm_to_pterm(+,?,?)). +:- meta_predicate(sexpr_sterm_to_pterm_list(+,?,?)). + +is_relation_sexpr('=>'). +is_relation_sexpr('<=>'). +is_relation_sexpr('==>'). +is_relation_sexpr('<==>'). +is_relation_sexpr('not'). +is_relation_sexpr(typeGenls). + +is_va_relation('or'). +is_va_relation('and'). +%= + + +is_exact_symbol(N,_):- \+ atom(N),!,fail. +is_exact_symbol(N,P):- nonvar(P),!,is_exact_symbol(N,PP),zalwayzz(P=PP). +is_exact_symbol(':-',':-'). +is_exact_symbol('?-','?-'). +is_exact_symbol('??',_). + +%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). + +maybe_var(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. + +%% sexpr_sterm_to_pterm(?VAR, ?V) is det. +% +% S-expression Sterm Converted To Pterm. +% +sexpr_sterm_to_pterm(S,P):- sexpr_sterm_to_pterm(0,S,P). + + +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ compound(STERM), !. +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ is_list(STERM), !. +% sexpr_sterm_to_pterm_pre_list(_,[S|STERM],[S|STERM]):- STERM == [], !. +sexpr_sterm_to_pterm_pre_list(TD,[S0|STERM0],[S|STERM]):- + (is_list(S0)->sexpr_sterm_to_pterm(TD,S0,S);sexpr_sterm_to_pterm_pre_list(TD,S0,S)), + sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM). + +sexpr_sterm_to_pterm(_TD,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm(_TD,S,P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,'#'(S),P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. + +% sexpr_sterm_to_pterm(TD,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_var(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_sterm_to_pterm(TD,NewList,PTERM). +% sexpr_sterm_to_pterm(TD,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +/* +sexpr_sterm_to_pterm(TD,[S,Vars|TERM],PTERM):- nonvar(S), + call_if_defined(common_logic_snark:is_quantifier(S)), + zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST), + PTERM=..[S,Vars|PLIST])),!. +*/ + +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- var(S), TD1 is TD + 1, sexpr_sterm_to_pterm_pre_list(TD1,STERM0,STERM), sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. +sexpr_sterm_to_pterm(_,[S,STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(_,[S|STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), is_list(STERM), + next_args_are_lists_unless_string(S,NonList), + length(LEFT,NonList),append(LEFT,[List|RIGHT],STERM),is_list(List), + TD1 is TD+1, + sexpr_sterm_to_pterm_list(TD1,LEFT,PLEFTLIST), + sexpr_sterm_to_pterm_list(0,RIGHT,PRIGHTLIST), + append(PLEFTLIST,[List|PRIGHTLIST],PLIST), + s_univ(TD,PTERM,[S|PLIST]),!. + +sexpr_sterm_to_pterm(TD,STERM0,PTERM):- TD1 is TD+1,sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), + is_list(STERM),!, sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,PLIST),!. +sexpr_sterm_to_pterm(_TD,VAR,VAR). + +is_quoter('#BQ'):- is_common_lisp. +is_quoter('#COMMA'):- is_common_lisp. +is_quoter('quote'). + +next_args_are_lists_unless_string(defmacro,1). +next_args_are_lists_unless_string(defun,1). +next_args_are_lists_unless_string(let,0). +next_args_are_lists_unless_string('let*',0). + +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S],O):- is_ftVar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S],O):- nonvar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_ftVar(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- S==and,!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +% sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_va_relation(S),!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_relation_sexpr(S),zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST),PTERM=..[S|PLIST])),!. +%sexpr_sterm_to_pterm(TD,STERM,PTERM):- STERM=..[S|TERM],sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. + +s_functor(F):- \+ atom(F), !,fail. +s_functor(F):- \+ atom_concat('?',_,F). + +s_univ(1,S,S):-!. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),length(ARGS,A),l_arity(F,A),P=..[F|ARGS]. +s_univ(0,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,S):-P=S. + +l_arity(F,A):- clause_b(arity(F,A)). +l_arity(function,1). +l_arity(quote,1). +l_arity('#BQ',1):- is_common_lisp. +l_arity(F,A):-current_predicate(F/A). +l_arity(_,1). + +%% sexpr_sterm_to_pterm_list(TD, ?VAR, ?VAR) is det. +% +% S-expression Converted To Pterm List. +% + +sexpr_sterm_to_pterm_list(TD,TERM,PTERMO):- is_list(TERM),append(BEFORE,[VAR],TERM),atom(VAR), + atom_concat_or_rtrace('@',RVAR,VAR),non_empty_atom(RVAR),svar_fixvarname(RVAR,V),!,append(BEFORE,'$VAR'(V),PTERM), + sexpr_sterm_to_pterm_list0(TD,PTERM,PTERMO). +sexpr_sterm_to_pterm_list(TD,TERM,PTERM):- sexpr_sterm_to_pterm_list0(TD,TERM,PTERM). + +sexpr_sterm_to_pterm_list0(_,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm_list0(_,[],[]):-!. +sexpr_sterm_to_pterm_list0(TD,[S|STERM],[P|PTERM]):-sexpr_sterm_to_pterm(TD,S,P),sexpr_sterm_to_pterm_list0(TD,STERM,PTERM),!. +sexpr_sterm_to_pterm_list0(_,VAR,VAR). + + +/*=================================================================== +% input_to_forms/3 does less consistancy checking then conv_to_sterm + +Always a S-Expression: 'WFFOut' placing variables in 'VARSOut' + +|?-input_to_forms(`(isa a b)`,Clause,Vars). +Clause = [isa,a,b] +Vars = _h70 + +| ?- input_to_forms(`(isa a (b))`,Clause,Vars). +Clause = [isa,a,[b]] +Vars = _h70 + +|?-input_to_forms(`(list a b )`,Clause,Vars) +Clause = [list,a,b] +Vars = _h70 + +?- input_to_forms_debug("(=> (isa ?NUMBER ImaginaryNumber) (exists (?REAL) (and (isa ?REAL RealNumber) (equal ?NUMBER (MultiplicationFn ?REAL (SquareRootFn -1))))))"). + +?- input_to_forms_debug("(=> (isa ?PROCESS DualObjectProcess) (exists (?OBJ1 ?OBJ2) (and (patient ?PROCESS ?OBJ1) (patient ?PROCESS ?OBJ2) (not (equal ?OBJ1 ?OBJ2)))))"). + + +| ?- input_to_forms(`(genlMt A ?B)`,Clause,Vars). +Clause = [genlMt,'A',_h998] +Vars = [=('B',_h998)|_h1101] + +| ?- input_to_forms(` + (goals Iran (not (exists (?CITIZEN) + (and (citizens Iran ?CITIZEN) (relationExistsInstance maleficiary ViolentAction ?CITIZEN)))))` + ). + +Clause = [goals,Iran,[not,[exists,[_h2866],[and,[citizens,Iran,_h2866],[relationExistsInstance,maleficiary,ViolentAction,_h2866]]]]] +Vars = [=(CITIZEN,_h2866)|_h3347] + +| ?- input_to_forms_debug(` +(queryTemplate-Reln QuestionTemplate definitionalDisplaySentence + (NLPatternList + (NLPattern-Exact "can you") + (RequireOne + (NLPattern-Word Acquaint-TheWord Verb) + (NLPattern-Word Tell-TheWord Verb)) + (RequireOne + (NLPattern-Exact "me with") + (NLPattern-Exact "me what")) + (OptionalOne + (WordSequence "the term") "a" "an") + (NLPattern-Template NPTemplate :THING) + (OptionalOne "is" ) + (OptionalOne TemplateQuestionMarkMarker)) + (definitionalDisplaySentence :THING ?SENTENCE)) ` +). + +| ?- input_to_forms_debug(` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2))` + ). + +input_to_forms_debug("(=> (disjointDecomposition ?CLASS @ROW) (forall (?ITEM1 ?ITEM2) (=> (and (inList ?ITEM1 (ListFn @ROW)) (inList ?ITEM2 (ListFn @ROW)) (not (equal ?ITEM1 ?ITEM2))) (disjoint ?ITEM1 ?ITEM2))))"). + + +input_to_forms_debug( +` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2)) ` + ). + +% txt_to_codes("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X). +input_to_forms_debug("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X,Y). + +// ==================================================================== */ +:- export(current_input_to_forms/2). + + +%% input_to_forms( ?FormsOut, ?Vars) is det. +% +% Input Converted To Forms. +% +current_input_to_forms(FormsOut,Vars):- + current_input(In), + input_to_forms(In, FormsOut,Vars). + +show_wff_debug(Wff,Vs):- nonvar(Wff),Wff=(H=B),!,show_wff_debug((H:-B),Vs). +show_wff_debug(Wff,Vs):- fmt("\n"), + must_or_rtrace(portray_clause_w_vars(Wff,Vs,[])),!. + +% input_to_forms_debug(String):- sumo_to_pdkb(String,Wff),dbginfo(Wff),!. +input_to_forms_debug(String):- + input_to_forms_debug(String,['=']). + +input_to_forms_debug(String,M:Decoders):- + setup_call_cleanup( + fmt("% ========================\n"), + (get_varnames(Was), show_wff_debug(input=String,Was), + input_to_forms(String,Wff,Vs), + b_setval('$variable_names',Vs), + show_wff_debug(to_forms=Wff,Vs), + do_decoders(Wff,Vs,M,Decoders),!, + ignore((nonvar(Vs),Vs\==[], show_wff_debug(vars=Vs,Vs)))), + fmt("\n% ========================\n")). + +do_decoders(_,_,_,[]):-!. +do_decoders(Wff,Vs,M,[Decoder|Decoders]):- !, + ((M:call(Decoder,Wff,WffO), ignore((Wff \== WffO , show_wff_debug((M:Decoder:-WffO),Vs)))) + -> do_decoders(WffO,Vs,M,Decoders) + ; + (fmt(decoder_failed(M:Decoder)), + do_decoders(Wff,Vs,M,Decoders))). +do_decoders(Wff,Vs,M,Decoder):- do_decoders(Wff,Vs,M,[Decoder]). + +:- export(input_to_forms/2). +%% input_to_forms( ?In, ?FormsOut) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut):- + input_to_forms(Codes,FormsOut,Vars) -> + add_variable_names(Vars). + +:- export(input_to_forms/3). + +%% input_to_forms( ?In, ?FormsOut, ?Vars) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut,Vars):- + push_varnames(_) -> + quietly_sreader((input_to_forms0(Codes,FormsOut,Vars))). + +is_variable_names_safe(Vars):- var(Vars),!. +is_variable_names_safe([N=V|Vars]):- !, + is_name_variable_safe(N,V) -> + is_variable_names_safe(Vars). +is_variable_names_safe([]). + +is_name_variable_safe(N,V):- + ok_var_name(N)-> var(V). + + +get_varnames(Was):- nb_current('$variable_names',Was)->true;Was=[]. + +push_varnames(New):- + (nonvar(New)-> b_setval('$variable_names',New) + ; (get_varnames(Was), Was = New, b_setval('$variable_names',Was))). + +add_variable_names(Vars):- var(Vars),!. +add_variable_names(N=V):- !, ignore(set_varname_s(N,V)). +add_variable_names([NV|Vars]):- add_variable_names(NV),!, add_variable_names(Vars). +add_variable_names([]). + +set_varname_s(N,V):- get_varnames(Was), set_varname4(Was,N,V,New),b_setval('$variable_names',New). + +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), NN==N,!, (V=VV->true;setarg(2,NV,V)), New = Was. +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), VV==V,!, (N=NN->true;setarg(1,NV,N)), New = Was. +set_varname4(Was,N,V,[N=V|Was]). + + +set_variable_names_safe(Vars):- + is_variable_names_safe(Vars)-> + b_setval('$variable_names',Vars); true. + +input_to_forms0(Codes,FormsOut,Vars):- + % is_openable(Codes),!, + parse_sexpr(Codes, Forms0),!, + once((to_untyped(Forms0, Forms1), + extract_lvars(Forms1,FormsOut,Vars))). + +input_to_forms0(Forms,FormsOut,Vars):- + (to_untyped(Forms, Forms1) -> + extract_lvars(Forms1,FormsOut,Vars)-> true),!. + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Lisprolog -- Interpreter for a simple Lisp. Written in Prolog. + Written Nov. 26th, 2006 by Markus Triska (triska@gmx.at). + Public domain code. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +%:- style_check(-singleton). +%:- style_check(-discontiguous). +% :- style_check(-atom). +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + +tstl:- tstl('./ontologyportal_sumo/Merge.kif'), + tstl('./ontologyportal_sumo/Translations/relations-en.txt'), + tstl('./ontologyportal_sumo/english_format.kif'), + tstl('./ontologyportal_sumo/domainEnglishFormat.kif'), + tstl('./ontologyportal_sumo/Mid-level-ontology.kif'), + !. + +writeqnl(O):- writeq(O),nl. + + + +%:- fixup_exports. +%:- endif. + diff --git a/metta_vspace/pyswip-want/metta_reader.pl b/metta_vspace/pyswip-want/metta_reader.pl new file mode 100755 index 00000000..58c76bdd --- /dev/null +++ b/metta_vspace/pyswip-want/metta_reader.pl @@ -0,0 +1,1616 @@ +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ +%:- encoding(iso_latin_1). +:- if(flush_output). :- endif. +:- if(setenv('RUST_BACKTRACE',full)). :- endif. +%:- if(\+ current_module(sxpr_reader)). +:- if( (false, \+ current_prolog_flag(wamcl_modules,false))). +:- module(s3xpr,[ + parse_sexpr/2, + codelist_to_forms/2, + svar_fixvarname/2, + parse_sexpr_untyped/2, + with_kifvars/1, + current_input_to_forms/2, + input_to_forms/2, + input_to_forms/3, + input_to_forms_debug/1, + input_to_forms_debug/2, + sexpr_sterm_to_pterm_list/3, + sexpr//1, + fixvars/4, + txt_to_codes/2, + quietly_sreader/1, + file_sexpr_with_comments//1, + with_lisp_translation/2, + to_untyped/2, + ok_var_name/1, + with_all_rest_info/1, + svar_fixvarname/2, + sexpr_sterm_to_pterm/2, + lisp_read/2, + phrase_from_stream_nd/2, + write_trans/4, + parse_sexpr/2]). +:- endif. + +:- ensure_loaded(swi_support). +:- ensure_loaded(metta_utils). +:- ensure_loaded(metta_testing). +:- set_prolog_flag(encoding,iso_latin_1). +is_wam_cl:- fail. + +:- use_module(library(backcomp)). +:- use_module(library(rbtrees)). + + +:- use_module(library(logicmoo/dcg_must)). +:- use_module(library(logicmoo/dcg_meta)). + + +%:- meta_predicate always_b(//,?,?). +%:- meta_predicate bx(0). +:- meta_predicate call_proc(1,?). +:- meta_predicate dcg_and2(//,//,?,?). +:- meta_predicate dcg_each_call_cleanup(0,//,0,?,?). +:- meta_predicate dcg_not(//,?,?). +:- meta_predicate dcg_phrase(//,?,?). +:- meta_predicate dcg_xor(//,//,?,?). +%:- meta_predicate expr_with_text(*,2,*,*,*). + +:- meta_predicate remove_optional_char(//,?,?). + +:- meta_predicate sexpr_vector0(*,//,?,?). +:- meta_predicate with_all_rest_info(1). +:- meta_predicate with_lisp_translation_stream(*,1). +:- meta_predicate write_trans(+,*,2,?). + +%:- assert((s3xpr:'$exported_op'(_,_,_):- fail)). +%:- assert((xlisting:'$exported_op'(_,_,_):- fail)). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +def_is_characterp(CH):- current_predicate(is_characterp/1),!,call(call,is_characterp,CH). +def_is_characterp_def('#\\'(_)). + +def_to_prolog_string(I,O):- current_predicate(to_prolog_string/2),!,call(call,to_prolog_string,I,O). +def_to_prolog_string(I,O):- any_to_string(I,O). + + +def_compile_all(I,O):- current_predicate(compile_all/2),!,call(call,compile_all,I,O). +def_compile_all(I,O):- fbug(undefined_compile_all(I)),I=O. + + +zalwayzz(G):- call(G)*->true;throw(fail_zalwayzz(G)). +zalwayzz(G,I,O):- phrase(G,I,O)*->true;ignore(((ignore((append(I,[],Txt),name(Str,Txt))),throw(fail_zalwayzz(Str,G))))). + + +% DCG rules for S-expressions metta_with metta_whitespace and comments +s_expr_metta(List) --> metta_wspace,!, s_expr_metta(List). +s_expr_metta(List) --> `(`, !, items_metta(List, `)`). +s_expr_metta(['[...]',List]) --> `[`, !, items_metta(List, `]`). +s_expr_metta(['{...}',List]) --> `{`, !, items_metta(List, `}`). + + +items_metta([], Until) --> Until,!. +items_metta([Item|Rest], Until) --> s_item_metta(Item, dcg_peek(Until)), !, items_metta(Rest, Until). + +%s_line_metta(end_of_file) --> file_eof,!. +s_line_metta(Expr) --> metta_wspace, !, s_line_metta(Expr). +s_line_metta(exec(Expr)) --> `!`, !, s_item_metta(Expr, e_o_s). +s_line_metta(Expr) --> s_item_metta(Expr, e_o_s). + +%s_item_metta(end_of_file, _) --> file_eof,!. +s_item_metta(Expr, Until) --> metta_wspace, !, s_item_metta(Expr, Until). +%s_item_metta('Expr', Until) --> Until,!. +s_item_metta(List,_Until) --> s_expr_metta(List),!. +s_item_metta(String,_Until) --> string_metta(String),!. +s_item_metta(Symbol, Until) --> symbol_metta(Symbol, Until). + +:- encoding(iso_latin_1). +%string_metta(S) --> `"`, !, string_until_metta(S, `"`), {atomics_to_string_metta(A,S)}. +%string_metta(Text) --> `"`, !, zalmetta_wayzz_metta(string_until_metta(Text,`"`)),!. +%string_metta(Text) --> `“`, !, zalmetta_wayzz_metta(string_until_metta(Text,(`”`;`“`))),!. +string_metta(Text) --> (`"`), string_until_metta(L,(`"`)), {atomics_to_string(L,Text)}, !. +string_metta(Text) --> (`”`;`“`;`"`), !, string_until_metta(L,(`“`;`”`;`"`)), {atomics_to_string(L,Text)}. +:- encoding(utf8). +%string_metta(Text) --> `#|`, !, zalmetta_wayzz_metta(string_until_metta(Text,`|#`)),!. + +% string_until_metta([], _) --> e_o_s, !. +%string_until_metta([], _) --> file_eof,!. +string_until_metta([], Until) --> Until, !. +string_until_metta([C|Cs], Until) --> escape_sequence_metta(C), !, string_until_metta(Cs, Until). +string_until_metta([C|Cs], Until) --> [R], { name(C, [R]) }, string_until_metta(Cs, Until). + +escape_sequence_metta(Char) --> `\\`,[Esc], { escape_char_metta([Esc], Char) }. +escape_char_metta(`"`, "\""). +escape_char_metta(`\\`, "\\"). +escape_char_metta(`n`, "\n"). +escape_char_metta(`r`, "\r"). +escape_char_metta(`t`,"\t"). +escape_char_metta(C,S):- sformat(S,'~s',[[C]]). + +symbol_metta(S, Until) --> metta_wspace,!,symbol_metta(S, Until). +symbol_metta(S, Until) --> string_until_metta(SChars,(dcg_peek(metta_white); Until)), { atomic_list_concat(SChars, S) }. + +%comment --> `;`,!,comment_chars_metta(S). +comment_chars_metta(S) --> string_until_metta(SChars,`\n`), { atomic_list_concat(SChars, S) }. + +%e_o_s --> file_eof,!. +e_o_s --> \+ [_|_]. + +%metta_ws --> e_o_s,!. +metta_ws --> metta_wspace, !, metta_ws. +metta_ws --> []. +metta_wspace --> `;`,!, comment_chars_metta(S), {assert(comment_metta(S))}. +metta_wspace --> metta_white. +metta_white --> [W], { char_type(W, white) }, !. + + + +%:- meta_predicate(always(0)). +%always(G):- must(G). + +:- use_module(library(logicmoo/filestreams)). +%:- use_module(library(bugger)). + +:- if(exists_file('./header')). +% :- include('./header'). +:- endif. +%:- use_module(eightball). + +:- thread_local(t_l:sreader_options/2). +kif_ok:- t_l:sreader_options(logicmoo_read_kif,TF),!,TF==true. + +with_kif_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,true),G). + +with_kif_not_ok(G):- + locally(t_l:sreader_options(logicmoo_read_kif,false),G). + + +:- meta_predicate((with_lisp_translation(+,1),input_to_forms_debug(+,:))). +:- meta_predicate sexpr_vector(*,//, + ?,?). + + +:- dynamic user:file_search_path/2. +:- multifile user:file_search_path/2. + +:- thread_local(t_l:s_reader_info/1). + +:- meta_predicate(quietly_sreader(0)). +%quietly_sreader(G):- quietly(G). +quietly_sreader(G):- !, call(G). + +%% with_lisp_translation( +FileOrStream, :Pred1) is det. +% +% With File or Stream read all S-expressions submitting each to Pred1 +% +with_lisp_translation(In,Pred1):- + is_stream(In),!,with_lisp_translation_stream(In,Pred1). +with_lisp_translation(Other,Pred1):- + setup_call_cleanup(l_open_input(Other,In), + with_lisp_translation_stream(In,Pred1), + ignore(notrace_catch_fail(close(In)))),!. + +with_lisp_translation_stream(In,Pred1):- + repeat, + once((lisp_read(In,O))), + (O== end_of_file + -> (with_all_rest_info(Pred1),!) ; + (((once((zalwayzz(call_proc(Pred1,O))))),fail))). + +call_proc(Pred1,O):- call(Pred1,O),!,with_all_rest_info(Pred1),!. + +with_all_rest_info(Pred1):- + forall(clause(t_l:s_reader_info(O2),_,Ref), + (zalwayzz(once(call(Pred1,O2))),erase(Ref))),!. + +parse_sexpr_untyped(I,O):- quietly_sreader((parse_sexpr(I,M))), + quietly_sreader((to_untyped(M,O))). + +read_pending_whitespace(In):- repeat, peek_char(In,Code), + (( \+ char_type(Code,space), \+ char_type(Code,white))-> ! ; (get_char(In,_),fail)). + + +make_tmpfile_name(Name,Temp):- + atomic_list_concat(List1,'/',Name),atomic_list_concat(List1,'_',Temp1), + atomic_list_concat(List2,'.',Temp1),atomic_list_concat(List2,'_',Temp2), + atomic_list_concat(List3,'\\',Temp2),atomic_list_concat(List3,'_',Temp3), + atom_concat_or_rtrace(Temp3,'.tmp',Temp),!. + + + + +:- meta_predicate(with_lisp_translation_cached(:,2,1)). +:- meta_predicate(maybe_cache_lisp_translation(+,+,2)). + +with_lisp_translation_cached(M:LFile,WithPart2,WithPart1):- + absolute_file_name(LFile,File), + make_tmpfile_name(LFile,Temp), + maybe_cache_lisp_translation(File,Temp,WithPart2),!, + finish_lisp_translation_cached(M,File,Temp,WithPart1). + +finish_lisp_translation_cached(M,File,Temp,WithPart1):- + multifile(M:lisp_trans/2), + dynamic(M:lisp_trans/2), + file_base_name(File,BaseName), + M:load_files([Temp],[qcompile(auto)]), + forall(M:lisp_trans(Part2,BaseName:Line), + once((b_setval('$lisp_translation_line',Line), + zalwayzz(M:call(WithPart1,Part2))))). + +maybe_cache_lisp_translation(File,Temp,_):- \+ file_needs_rebuilt(Temp,File),!. +maybe_cache_lisp_translation(File,Temp,WithPart2):- + file_base_name(File,BaseName), + setup_call_cleanup(open(Temp,write,Outs,[encoding(utf8)]), + must_det((format(Outs,'~N~q.~n',[:- multifile(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- dynamic(lisp_trans/2)]), + format(Outs,'~N~q.~n',[:- style_check(-singleton)]), + format(Outs,'~N~q.~n',[lisp_trans(translated(File,Temp,BaseName),BaseName:( -1))]), + with_lisp_translation(File,write_trans(Outs,BaseName,WithPart2)), + format(Outs,'~N~q.~n',[end_of_file]))), + ((ignore(notrace_catch_fail(flush_output(Outs),_,true)),ignore(notrace_catch_fail(close(Outs),_,true))))),!. + + +write_trans(Outs,File,WithPart2,Lisp):- + zalwayzz((call(WithPart2,Lisp,Part), + nb_current('$lisp_translation_line',Line), + format(Outs,'~N~q.~n',[lisp_trans(Part,File:Line)]))),!. + +/* alternate method*/ +phrase_from_stream_partial(Grammar, In):- + phrase_from_stream((Grammar,!,lazy_forgotten(In)), In). + +lazy_forgotten(In,UnUsed,UnUsed):- + (is_list(UnUsed)-> true ; append(UnUsed,[],UnUsed)), + length(UnUsed,PlzUnread), + seek(In, -PlzUnread, current, _). + + +% :- use_module(library(yall)). +% :- rtrace. +% tstl(I):- with_lisp_translation(I,([O]>>(writeq(O),nl))). +tstl(I):- with_kifvars(with_lisp_translation(I,writeqnl)). + +with_kifvars(Goal):- + locally(t_l:sreader_options(logicmoo_read_kif,true),Goal). + + + +%:- thread_local(t_l:fake_buffer_codes/2). + + +%% parse_sexpr( :TermS, -Expr) is det. +% +% Parse S-expression. +% + +parse_sexpr(S, Expr) :- quietly_sreader(parse_meta_term( + file_sexpr_with_comments, S, Expr)). + +%% parse_sexpr_ascii( +Codes, -Expr) is det. +% +% Parse S-expression Codes. +% +parse_sexpr_ascii(S, Expr) :- quietly_sreader(parse_meta_ascii(file_sexpr_with_comments, S,Expr)),!. + + +parse_sexpr_ascii_as_list(Text, Expr) :- txt_to_codes(Text,DCodes), + clean_fromt_ws(DCodes,Codes),!,append([`(`,Codes,`)`],NCodes),!, + phrase(sexpr_rest(Expr), NCodes, []). + + +%% parse_sexpr_string( +Codes, -Expr) is det. +% +% Parse S-expression That maybe sees string from Codes. +% +parse_sexpr_string(S,Expr):- + locally_setval('$maybe_string',t,parse_sexpr(string(S), Expr)),!. + +%% parse_sexpr_stream( +Stream, -Expr) is det. +% +% Parse S-expression from a Stream +% +parse_sexpr_stream(S,Expr):- quietly_sreader(parse_meta_stream(file_sexpr_with_comments,S,Expr)),!. + +:- export('//'(file_sexpr,1)). +:- export('//'(sexpr,1)). + +% for offline use of this lisp reader +intern_and_eval(UTC,V):- current_predicate(lisp_compiled_eval/2),!, + call(call,(reader_intern_symbols(UTC,M),!,lisp_compiled_eval(M,V))). +intern_and_eval(UTC,'$intern_and_eval'(UTC)). + +% Use DCG for parser. + + +%file_sexpr_with_comments(O) --> [], {clause(t_l:s_reader_info(O),_,Ref),erase(Ref)},!. +file_sexpr_with_comments(end_of_file) --> file_eof,!. +file_sexpr_with_comments('+') --> `+`, swhite,!. + +file_sexpr_with_comments(O) --> one_blank,!,file_sexpr_with_comments(O),!. % WANT? +file_sexpr_with_comments(end_of_file) --> `:EOF`,!. +file_sexpr_with_comments(C) --> dcg_peek(`#|`),!,zalwayzz(comment_expr(C)),swhite,!. +file_sexpr_with_comments(C) --> dcg_peek(`;`),!, zalwayzz(comment_expr(C)),swhite,!. +file_sexpr_with_comments(Out) --> {kif_ok}, prolog_expr_next, prolog_readable_term(Out), !. +file_sexpr_with_comments(Out,S,E):- \+ t_l:sreader_options(with_text,true),!,phrase(file_sexpr(Out),S,E),!. +file_sexpr_with_comments(Out,S,E):- expr_with_text(Out,file_sexpr(O),O,S,E),!. + +prolog_expr_next--> dcg_peek(`:-`). +prolog_expr_next--> dcg_peek(read_string_until(S,(eol;`.`))),{atom_contains(S,':-')}. +prolog_expr_next--> dcg_peek(`.{`). + +prolog_readable_term(Expr) --> `.`,prolog_readable_term(Read), {arg(1,Read,Expr),!}. +prolog_readable_term(Expr,S,E):- + notrace(catch((read_term_from_codes(S,Expr,[subterm_positions(FromTo),cycles(true), module( baseKB), + double_quotes(string), + comments(CMT), variable_names(Vars)]),implode_threse_vars(Vars), + arg(2,FromTo,To), length(TermCodes,To), + append(TermCodes,Remaining,S), + `.`=[Dot],(Remaining=[Dot|E]/*;Remaining=E*/),!, + must(record_plterm_comments(CMT))),_,fail)). +record_plterm_comments(L):- is_list(L),!,maplist(record_plterm_comments,L). +record_plterm_comments(_-CMT):- assert(t_l:s_reader_info(CMT)). + + +% in Cyc there was a fitness heuristic that every time an logical axiom had a generated a unique consequent it was considered to have utility as it would expand the breadth of a search .. the problem often was those consequents would feed a another axiom's antecedant where that +:- asserta((system:'$and'(X,Y):- (X,Y))). + +%expr_with_text(Out,DCG,O,S,E):- +% call(DCG,S,E) -> append(S,Some,E) -> get_sexpr_with_comments(O,Some,Out,S,E),!. + +get_sexpr_with_comments(O,_,O,_,_):- compound(O),functor(O,'$COMMENT',_),!. +get_sexpr_with_comments(O,Txt,with_text(O,Str),S,_E):-append(Txt,_,S),!,text_to_string(Txt,Str). +%file_sexpr_with_comments(O,with_text(O,Txt),S,E):- copy_until_tail(S,Copy),text_to_string_safe(Copy,Txt),!. + + +file_sexpr(end_of_file) --> file_eof,!. +% WANT? +file_sexpr(O) --> sblank,!,file_sexpr(O),!. +% file_sexpr(planStepLPG(Name,Expr,Value)) --> swhite,sym_or_num(Name),`:`,swhite, sexpr(Expr),swhite, `[`,sym_or_num(Value),`]`,swhite. % 0.0003: (PICK-UP ANDY IBM-R30 CS-LOUNGE) [0.1000] +% file_sexpr(Term,Left,Right):- eoln(EOL),append(LLeft,[46,EOL|Right],Left),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. +% file_sexpr(Term,Left,Right):- append(LLeft,[46|Right],Left), ( \+ member(46,Right)),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. +file_sexpr(Expr) --> sexpr(Expr),!. +% file_sexpr(Expr,H,T):- lisp_dump_break,rtrace(phrase(file_sexpr(Expr), H,T)). +/* +file_sexpr(Expr) --> {fail}, + sexpr_lazy_list_character_count(Location,Stream), + {break, + seek(Stream,Location,bof,_), + read_clause(Stream,Expr,[cycles(true),double_quotes(string),variable_names(Vars)]), + implode_threse_vars(Vars)},!. + +file_sexpr(Expr) --> sexpr(Expr),!. + +file_sexpr(end_of_file) --> []. +*/ +% file_sexpr('$ERROR'(S_EOF)) --> read_until_eof_e(Unitl_EOF),!,{sformat(S_EOF,'~s',[Unitl_EOF])}. +% read_until_eof_e(Unitl_EOF,S,E):- append(S,E,Unitl_EOF),break,is_list(Unitl_EOF),!. + +%read_dispatch(E,[Disp,Char|In],Out):- read_dispatch_char([Disp,Char],E,In,Out). +read_dispatch(E,[DispatCH|In],Out):- read_dispatch_char([DispatCH],E,In,Out). + +read_dispatch_char(DispatCH,Form,In,Out):- sread_dyn:plugin_read_dispatch_char(DispatCH,Form,In,Out),!. +% read_dispatch_char(`@`,Form,In,Out):- phrase(sexpr(Form), In, Out),!. + +read_dispatch_error(Form,In,Out):- trace, dumpST,trace_or_throw((read_dispatch_error(Form,In,Out))). + + + + +:- multifile(sread_dyn:plugin_read_dispatch_char/4). +:- dynamic(sread_dyn:plugin_read_dispatch_char/4). + +:- use_module(library(dcg/basics)). + +% #x Hex +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),(phrase((`-`,dcg_basics:xinteger(FormP)), In, Out)),!,Form is -FormP. + +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Xx`),!,zalwayzz(phrase(dcg_basics:xinteger(Form), In, Out)),!. + +% #B Binary +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Bb`),!,phrase(signed_radix_2(2,Form), In, Out),!. + +% #O Octal +sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- + member(DispatCH,`Oo`),!,phrase(signed_radix_2(8,Form), In, Out),!. + +signed_radix_2(W,V)--> signed_radix_2_noext(W,Number),extend_radix(W,Number,V). + +signed_radix_2_noext(W,Number) --> `-`,!,unsigned_radix_2(W,NumberP),{Number is - NumberP },!. +signed_radix_2_noext(W,Number) --> `+`,!,unsigned_radix_2(W,Number). +signed_radix_2_noext(W,Number) --> unsigned_radix_2(W,Number). + +unsigned_radix_2(W,Number) --> radix_digits(W,Xs),!,{mkvar_w(Xs,W,Number)},!. + + +radix(Radix)-->`#`,integer(Radix),ci(`r`). +radix(16)-->`#`,ci(`X`). +radix(8)-->`#`,ci(`O`). +radix(2)-->`#`,ci(`B`). + +signed_radix_number(V)--> radix(Radix),!,signed_radix_2(Radix,V). +unsigned_radix_number(V)--> radix(Radix),!,unsigned_radix_2(Radix,V). + +extend_radix(Radix,Number0,'$RATIO'(Number0,Number1)) --> `/`,unsigned_radix_2(Radix,Number1). +%extend_radix(Radix,Number0,'/'(NumberB,Number1)) --> `.`,radix_number(Radix,Number1),{NumberB is (Number0*Number1)+1},!. +%extend_radix(Radix,Number0,'/'(NumberB,NumberR)) --> `.`,radix_number(Radix,Number1),{NumberR is Number1 * Radix, NumberB is (Number0*Number1)+1},!. +extend_radix(_Radix,Number,Number) --> []. + +radix_digits(OF,[X|Xs]) --> xdigit(X),{X alpha_to_lower(C),{X is C - 87,X []. + + + +mkvar_w([W0|Weights], Base, Val) :- + mkvar_w(Weights, Base, W0, Val). + +mkvar_w([], _, W, W). +mkvar_w([H|T], Base, W0, W) :- + W1 is W0*Base+(H), + mkvar_w(T, Base, W1, W). + + +ci([])--> !, []. +ci([U|Xs]) --> {to_lower(U,X)},!,alpha_to_lower(X),ci(Xs). + + +remove_optional_char(S)--> S,!. +remove_optional_char(_)-->[]. + +implode_threse_vars([N='$VAR'(N)|Vars]):-!, implode_threse_vars(Vars). +implode_threse_vars([]). + +ugly_sexpr_cont('$OBJ'([S|V])) --> rsymbol_maybe(``,S), sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. +ugly_sexpr_cont('$OBJ'(V)) --> read_string_until_pairs(VS,`>`), swhite,{parse_sexpr_ascii_as_list(VS,V)},!. +ugly_sexpr_cont('$OBJ'(sugly,S)) --> read_string_until(S,`>`), swhite,!. + +%% sexpr(L)// is det. +% + +%sexpr(L) --> sblank,!,sexpr(L),!. +%sexpr(_) --> `)`,!,{trace,break,throw_reader_error(": an object cannot start with #\\)")}. +sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(fbug(sexpr(X))))),!. +%sexpr(X,H,T):- zalwayzz(sexpr0(X,H,T)),!,swhite. +is_common_lisp:- fail. + +sexpr0(L) --> sblank,!,sexpr(L),!. +sexpr0(L) --> `(`, !, swhite, zalwayzz(sexpr_list(L)),!, swhite. +sexpr0((Expr)) --> `.{`, read_string_until(S,`}.`), swhite, + {prolog_readable_term(Expr,S,_)}. + + +sexpr0(['#'(quote),E]) --> `'`, !, sexpr(E). +sexpr0(['#'(hbackquote),E]) --> {is_scm}, `#```, !, sexpr(E). +sexpr0(['#'(backquote),E]) --> ````, !, sexpr(E). +sexpr0(['#BQ-COMMA-ELIPSE',E]) --> `,@`, !, sexpr(E). +sexpr0(['#COMMA',E]) --> { is_common_lisp }, `,`, !, sexpr(E). +sexpr0(['#HCOMMA',E]) --> {is_scm}, `#,`, !, sexpr(E). +sexpr0('$OBJ'(claz_bracket_vector,V)) --> `[`, sexpr_vector(V,`]`),!, swhite. + +% MeTTA/NARS % sexpr0('#'(A)) --> `|`, !, read_string_until(S,`|`), swhite,{quietly_sreader(((atom_string(A,S))))}. + +% maybe this is KIF +sexpr0('?'(E)) --> {kif_ok}, `?`, dcg_peek(([C],{sym_char(C)})),!, rsymbol(``,E), swhite. +% @TODO if KIF sexpr('#'(E)) --> `&%`, !, rsymbol(`#$`,E), swhite. + +sexpr0('$STRING'(S)) --> s_string(S),!. + +/******** BEGIN HASH ************/ + +sexpr0('#') --> `#`, swhite,!. +sexpr0('#\\'(35)) --> `#\\#`,!, swhite. +sexpr0(E) --> `#`,read_dispatch(E),!. + + +%sexpr('#\\'(C)) --> `#\\`,ci(`u`),!,remove_optional_char(`+`),dcg_basics:xinteger(C),!. +%sexpr('#\\'(C)) --> `#\\`,dcg_basics:digit(S0), swhite,!,{atom_codes(C,[S0])}. +sexpr0('#\\'(32)) --> `#\\ `,!. +sexpr0('#\\'(C)) --> `#\\`,!,zalwayzz(rsymbol(``,C)), swhite. + +%sexpr(['#-',K,Out]) --> `#-`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. +%sexpr(['#+',K,Out]) --> `#+`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. + +sexpr0(['#-',K,O]) --> `#-`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. +sexpr0(['#+',K,O]) --> `#+`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. + +:- if(is_wam_cl). + sexpr0(P) --> `#`,ci(`p`),!,zalwayzz((sexpr(C),{f_pathname(C,P)})),!. +:- endif. +sexpr0('$S'(C)) --> (`#`, ci(`s`),`(`),!,zalwayzz(sexpr_list(C)),swhite,!. +%sexpr('$COMPLEX'(R,I)) --> `#`,ci(`c`),`(`,!, lnumber(R),lnumber(I),`)`. +sexpr0('$COMPLEX'(R,I)) --> (`#`, ci(`c`),`(`),!,zalwayzz(sexpr_list([R,I])),swhite,!. +sexpr0('$OBJ'(claz_bitvector,C)) --> `#*`,radix_digits(2,C),swhite,!. + +sexpr0(function(E)) --> `#\'`, sexpr(E), !. %, swhite. +sexpr0('$OBJ'(claz_vector,V)) --> `#(`, !, zalwayzz(sexpr_vector(V,`)`)),!, swhite,!. + +sexpr0(Number) --> `#`,integer(Radix),ci(`r`),!,zalwayzz((signed_radix_2(Radix,Number0),extend_radix(Radix,Number0,Number))),!. +sexpr0('$ARRAY'(Dims,V)) --> `#`,integer(Dims),ci(`a`),!,sexpr(V). +sexpr0(V) --> `#.`, !,sexpr(C),{to_untyped(C,UTC),!,intern_and_eval(UTC,V)},!. +sexpr0('#'(E)) --> `#:`, !,zalwayzz(rsymbol(`#:`,E)), swhite. + +sexpr0(OBJ)--> `#<`,!,zalwayzz(ugly_sexpr_cont(OBJ)),!. + +% @TODO if CYC sexpr('#'(E)) --> `#$`, !, rsymbol(`#$`,E), swhite. +% @TODO if scheme sexpr('#'(t)) --> `#t`, !, swhite. +% @TODO if schemesexpr('#'(f)) --> `#f`, !, swhite. + +% sexpr(E) --> `#`,read_dispatch_error(E). + +/*********END HASH ***********/ + +sexpr0(E) --> sym_or_num(E), swhite,!. +sexpr0(Sym) --> `#`,integer(N123), swhite,!, {atom_concat('#',N123,Sym)}. +sexpr0(C) --> s_line_metta(C) ,swhite, !. %s_line_metta(C), !. +sexpr0(C) --> s_item_metta(C, e_o_s), swhite. %s_line_metta(C), !. +sexpr0(E) --> !,zalwayzz(sym_or_num(E)), swhite,!. + +is_scm:- fail. + +% c:/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/guile/module/ice-9/and-let-star.scm + +priority_symbol((`|-`)). +/* +priority_symbol((`#=`)). +priority_symbol((`#+`)). +priority_symbol((`#-`)). +priority_symbol((`#false`)). +priority_symbol((`#true`)). +priority_symbol((`#nil`)). +priority_symbol((`#null`)). +priority_symbol((`#f`)). +priority_symbol((`#;`)):- is_scm. +priority_symbol((`#t`)). +priority_symbol((`+1+`)). +priority_symbol((`+1-`)). +priority_symbol((`-#+`)). +priority_symbol((`-1+`)). +priority_symbol((`-1-`)). +priority_symbol((`1+`)). +priority_symbol((`1-`)). +*/ + +sym_or_num('$COMPLEX'(L)) --> `#C(`,!, swhite, sexpr_list(L), swhite. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. +%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. + +%sym_or_num((E)) --> lnumber(E),swhite,!. +sym_or_num(E) --> rsymbol_maybe(``,E),!. +%sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. +%sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. +% sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. + + +dcg_xor(DCG1,DCG2,S,E):- copy_term(DCG1,DCG1C),phrase(DCG1C,S,E),!, + (phrase(DCG2,S,[])->true;zalwayzz(DCG1C=DCG1)),!. +dcg_xor(_,DCG2,S,E):- phrase(DCG2,S,E),!. +%sblank --> [C], {var(C)},!. + +% sblank --> comment_expr(S,I,CP),!,{assert(t_l:s_reader_info('$COMMENT'(S,I,CP)))},!,swhite. +sblank --> comment_expr(CMT),!,{assert(t_l:s_reader_info(CMT))},!,swhite. +sblank --> [C], {nonvar(C),charvar(C),!,bx(C =< 32)},!,swhite. + +sblank_line --> eoln,!. +sblank_line --> [C],{bx(C =< 32)},!, sblank_line. + +s_string(Text) --> sexpr_string(Text). +s_string(Text) --> {kif_ok},`'`, !, zalwayzz(read_string_until(Text,`'`)),!. + + + +swhite --> sblank,!. +swhite --> []. + + +sexpr_lazy_list_character_count(Location, Stream, Here, Here) :- + sexpr_lazy_list_character_count(Here, Location, Stream). + +sexpr_lazy_list_character_count(Here, CharNo, Stream) :- + '$skip_list'(Skipped, Here, Tail), + ( attvar(Tail) + -> frozen(Tail, + pure_input:read_to_input_stream(Stream, _PrevPos, Pos, _List)), + stream_position_data(char_count, Pos, EndRecordCharNo), + CharNo is EndRecordCharNo - Skipped + ; Tail == [] + -> CharNo = end_of_file-Skipped + ; type_error(lazy_list, Here) + ). + + + +comment_expr('$COMMENT'(Expr,I,CP)) --> comment_expr_3(Expr,I,CP),!. + +comment_expr_3(T,N,CharPOS) --> {\+ kif_ok}, `#|`, !, my_lazy_list_location(file(_,_,N,CharPOS)),!, zalwayzz(read_string_until_no_esc(S,`|#`)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> `;`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +comment_expr_3(T,N,CharPOS) --> {kif_ok}, `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, + {text_to_string_safe(S,T)},!. +% For Scheme +comment_expr_3(T,N,CharPOS) --> `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,`!#`)),!, + {text_to_string_safe(S,T)},!. + + +sexprs([H|T]) --> sexpr(H), !, sexprs(T). +sexprs([]) --> []. + + +:- export('//'(sexpr_list,1)). + + +peek_symbol_breaker_or_number --> dcg_peek([C]),{\+ sym_char(C),\+ char_type(C,digit)}. +peek_symbol_breaker --> dcg_peek([C]),{\+ sym_char(C)}. +peek_symbol_breaker --> one_blank. + +sexpr_list(X) --> one_blank,!,sexpr_list(X). +sexpr_list([]) --> `)`, !. +%sexpr_list(_) --> `.`, [C], {\+ sym_char(C)}, {fail}. +sexpr_list([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_rest([]) --> `)`, !. +% allow dotcons/improper lists.. but also allow dot in the middle of the list (non-CL) +sexpr_rest(E) --> `.`, [C], {\+ sym_char(C)}, sexpr(E,C), `)` , ! . +sexpr_rest(E) --> {kif_ok}, `@`, rsymbol(`?`,E), `)`. +sexpr_rest([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. + +sexpr_vector(O,End) --> zalwayzz(sexpr_vector0(IO,End)),!,{zalwayzz(O=IO)}. + +sexpr_vector0(X) --> one_blank,!,sexpr_vector0(X). +sexpr_vector0([],End) --> End, !. +sexpr_vector0([First|Rest],End) --> sexpr(First), !, sexpr_vector0(Rest,End). + +%s_string_cont(Until,"") --> Until,!, swhite. +:- encoding(iso_latin_1). +sexpr_string(Text) --> `"`, !, zalwayzz(read_string_until(Text,`"`)),!. +sexpr_string(Text) --> `“`, !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> (`”`;`“`), !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. +sexpr_string(Text) --> `#|`, !, zalwayzz(read_string_until(Text,`|#`)),!. +:- encoding(utf8). +%sexpr_string([C|S],End) --> `\\`,!, zalwayzz(escaped_char(C)),!, sexpr_string(S,End). +%sexpr_string([],End) --> End, !. +% sexpr_string([32|S]) --> [C],{eoln(C)}, sexpr_string(S). +%sexpr_string([C|S],End) --> [C],!,sexpr_string(S,End). + +rsymbol_chars([C1,C2|Rest]) --> [C1,C2], {priority_symbol([C1,C2|Rest])},Rest,!. +rsymbol_chars([C|S])--> [C], {sym_char(C)},!, sym_continue(S),!. +%rsymbol_cont(Prepend,E) --> sym_continue(S), {append(Prepend,S,AChars),string_to_atom(AChars,E)},!. + +rsymbol(Chars,E) --> rsymbol_chars(List), {append(Chars,List,AChars),string_to_atom(AChars,E)},!. + +rsymbol_maybe(Prepend,ES) --> rsymbol(Prepend,E),{maybe_string(E,ES)},!. + +maybe_string(E,ES):- nb_current('$maybe_string',t),!,text_to_string_safe(E,ES),!. +maybe_string(E,E). + +sym_continue([H|T]) --> [H], {sym_char(H)},!, sym_continue(T). +sym_continue([39]) --> `'`, peek_symbol_breaker,!. +sym_continue([]) --> peek_symbol_breaker,!. +sym_continue([]) --> []. + +string_vector([First|Rest]) --> sexpr(First), !, string_vector(Rest),!. +string_vector([]) --> [], !. + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + +lnumber(_)--> [C],{code_type(C,alpha)},!,{fail}. +lnumber(N)--> lnumber0(N),!. % (peek_symbol_breaker;[]). + +oneof_ci(OneOf,[C])--> {member(C,OneOf)},ci([C]). +dcg_and2(DCG1,DCG2,S,E) :- dcg_phrase(DCG1,S,E),!,dcg_phrase(DCG2,S,E),!. +dcg_each_call_cleanup(Setup,DCG,Cleanup,S,E) :- each_call_cleanup(Setup,dcg_phrase(DCG,S,E),Cleanup). +dcg_phrase(\+ DCG1,S,E):- !, \+ phrase(DCG1,S,E). +dcg_phrase(DCG1,S,E):- phrase(DCG1,S,E),!. + +dcg_not(DCG1,S,E) :- \+ dcg_phrase(DCG1,S,E). + +enumber(N)--> lnumber(L),!,{to_untyped(L,N)},!. + +/* +Format Minimum Precision Minimum Exponent Size +Short 13 bits 5 bits +Single 24 bits 8 bits +Double 50 bits 8 bits +Long 50 bits 8 bits +*/ + +float_e_type(`E`,claz_single_float). +float_e_type(`f`,claz_single_float). +float_e_type(`d`,claz_double_float). +float_e_type(`L`,claz_long_float). +float_e_type(`s`,claz_short_float). + +lnumber_exp('$EXP'(N,T,E))-->snumber_no_exp(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),{exp:float_e_type(TC,T)},!. +lnumber_exp('$EXP'(N,T,E))-->dcg_basics:integer(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),!,{float_e_type(TC,T)},!. + + +lnumber0(N) --> lnumber_exp(N),!. +lnumber0('$RATIO'(N,D)) --> sint(N),`/`,uint(D),!. +lnumber0(N) --> snumber_no_exp(N),!. +%lnumber0(N) --> dcg_basics:number(N),!. + + +snumber_no_exp(N)--> `-`,!,unumber_no_exp(S),{N is -S},!. +snumber_no_exp(N)--> `+`,!,unumber_no_exp(N),!. +snumber_no_exp(N)--> unumber_no_exp(N),!. +%snumber_no_exp(N)--> sint(N),!. + + +sint(N) --> signed_radix_number(N),!. +sint(N)--> `-`,!,uint(S),{N is -S},!. +sint(N)--> `+`,!,uint(N),!. +sint(N)--> uint(N),!. + +natural_int(_) --> dcg_not(dcg_basics:digit(_)),!,{fail}. +natural_int(N) --> dcg_basics:integer(N),!. + +digits_dot_digits --> natural_int(_),!,`.`,!,natural_int(_),!. + +unumber_no_exp(N) --> dcg_and2(digits_dot_digits,dcg_basics:float(N)),!. +unumber_no_exp(N) --> `.`,!,dcg_basics:digit(S0),!,dcg_basics:digits(S),{(notrace_catch_fail(number_codes(N,[48,46,S0|S])))},!. +unumber_no_exp(N)--> natural_int(E),`.`,natural_int(S),{(notrace_catch_fail(number_codes(ND,[48,46|S]))),N is ND + E},!. +unumber_no_exp(N) --> natural_int(N),!,remove_optional_char(`.`),!. + +uint(N) --> unsigned_radix_number(N),!. +uint(N) --> natural_int(N),!,remove_optional_char(`.`),!. + + +% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . + + +%= + +%% sexpr( ?E, ?C, ?X, ?Z) is det. +% +% S-Expression. +% +sexpr(E,C,X,Z) :- swhite([C|X],Y), sexpr(E,Y,Z),!. + +% dquote semicolon parens hash qquote comma backquote + +%= + +%% sym_char( ?C) is det. +% +% Sym Char. (not ";()#',` +% ) +% + +sym_char(C):- bx(C =< 32),!,fail. +%sym_char(44). % allow comma in middle of symbol +sym_char(C):- memberchk(C,`"()```),!,fail. % maybe 44 ? comma maybe not # or ; ? ' +%sym_char(C):- nb_current('$maybe_string',t),memberchk(C,`,.:;!%`),!,fail. +sym_char(_):- !. + +sym_char_start(C):- C\==44,C\==59,sym_char(C). + + + +:- thread_initialization(nb_setval('$maybe_string',[])). + +:- thread_local(t_l:s2p/1). +:- thread_local(t_l:each_file_term/1). + + + +%= + +%% to_unbackquote( ?I, ?O) is det. +% +% Converted To Unbackquote. +% +to_unbackquote(I,O):-to_untyped(I,O),!. + +:- export(to_untyped/2). + + +%atom_or_string(X):- (atom(X);string(X)),!. +as_keyword(C,K):- atom(C),!,(atom_concat_or_rtrace(':',_,C)->K=C;atom_concat_or_rtrace(':',C,K)),!. +as_keyword(C,C):- \+compound(C),!. +as_keyword([A|B],[AK|BK]):- !, as_keyword(A,AK),as_keyword(B,BK),!. +as_keyword(C,C). + + +%% to_untyped( :TermVar, :TermName) is det. +% +% Converted To Untyped. +% +to_untyped(S,S):- var(S),!. +to_untyped(S,S):- is_dict(S),!. +to_untyped([],[]):-!. +to_untyped('#-'(C,I),'#-'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('#+'(C,I),'#+'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. +to_untyped('?'(S),_):- S=='??',!. +% to_untyped('?'(S),'$VAR'('_')):- S=='??',!. +% to_untyped(VAR,NameU):-atom(VAR),atom_concat_or_rtrace('#$',NameU,VAR),!. +to_untyped(VAR,NameU):-atom(VAR),(atom_concat_or_rtrace(N,'.',VAR)->true;N=VAR),(notrace_catch_fail(atom_number(N,NameU))),!. +%to_untyped(S,s(L)):- string(S),atom_contains(S,' '),atomic_list_concat(['(',S,')'],O),parse_sexpr_string(O,L),!. +to_untyped(S,S):- string(S),!. +to_untyped(S,S):- number(S),!. +%to_untyped(S,O):- atom(S),notrace_catch_fail(atom_number(S,O)),!. +to_untyped(Var,'$VAR'(Name)):-svar(Var,Name),!. +to_untyped('?'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped(Atom,Atom):- \+ compound(Atom),!. +to_untyped('@'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. +to_untyped('#'(S),O):- !, (nonvar(S)->to_untyped(S,O) ; O='#'(S)). +to_untyped('$CHAR'(S),C):-!,to_untyped('#\\'(S),C),!. +to_untyped('#\\'(S),C):-to_char(S,C),!. +to_untyped('#\\'(S),'#\\'(S)):-!. +to_untyped('$OBJ'([FUN, F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'([FUN| F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). +to_untyped('$OBJ'(S),'$OBJ'(O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Type,O)):- text_to_string_safe(Ungly,Str),string_to_atom(Str,Type),to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),'$OBJ'(Ungly,O)):-to_untyped(S,O),!. +to_untyped('$OBJ'(Ungly,S),O):-to_untyped(S,SO),!,O=..[Ungly,SO]. +to_untyped('$COMPLEX'(N0,D0),N):- to_untyped(D0,D), notrace_catch_fail(( 0 =:= D)),to_untyped(N0,N). +to_untyped('$RATIO'(N0,D0),V):- to_untyped(N0,N),to_untyped(D0,D), notrace_catch_fail(( 0 is N mod D, V is N div D)). +to_untyped('$NUMBER'(S),O):-nonvar(S),to_number(S,O),to_untyped(S,O),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_short_float,S)):- float(S),!. +to_untyped('$NUMBER'(S),'$NUMBER'(claz_bignum,S)). +to_untyped('$EXP'(I,'E',E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,claz_single_float,E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. +to_untyped('$EXP'(I,T,E),'$NUMBER'(T,N)):- (notrace_catch_fail(N is (I * 10^E))),!. +to_untyped('$EXP'(I,T,E),'$EXP'(I,T,E)):-!. + +to_untyped(with_text(I,_Txt),O):-to_untyped(I,O),!. +to_untyped(with_text(I,Txt),with_text(O,Txt)):-to_untyped(I,O),!. + +% to_untyped([[]],[]):-!. +to_untyped('$STR'(Expr),Forms):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped('$STRING'(Expr),'$STRING'(Forms)):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. +to_untyped(['#'(Backquote),Rest],Out):- is_common_lisp, Backquote == backquote, !,to_untyped(['#'('#BQ'),Rest],Out). +to_untyped(['#'(S)|Rest],OOut):- nonvar(S), is_list(Rest),must_maplist(to_untyped,[S|Rest],[F|Mid]), + ((atom(F),t_l:s2p(F))-> Out=..[F|Mid];Out=[F|Mid]), + to_untyped(Out,OOut). +to_untyped(ExprI,ExprO):- ExprI=..[F|Expr],atom_concat_or_rtrace('$',_,F),!,must_maplist(to_untyped,Expr,TT),ExprO=..[F|TT]. + +% to_untyped([H|T],Forms):-is_list([H|T]),zalwayzz(text_to_string_safe([H|T],Forms);maplist(to_untyped,[H|T],Forms)). +to_untyped([H|T],[HH|TT]):-!,zalwayzz((to_untyped(H,HH),!,to_untyped(T,TT))). +to_untyped(ExprI,ExprO):- zalwayzz(ExprI=..Expr), + must_maplist(to_untyped,Expr,[HH|TT]),(atom(HH)-> ExprO=..[HH|TT] ; ExprO=[HH|TT]),!. +% to_untyped(Expr,Forms):-def_compile_all(Expr,Forms),!. + +to_number(S,S):-number(S),!. +to_number(S,N):- text_to_string_safe(S,Str),number_string(N,Str),!. + + +to_char(S,'#\\'(S)):- var(S),!. +to_char('#'(S),C):- !, to_char(S,C). +to_char('#\\'(S),C):- !, to_char(S,C). +to_char(S,C):- atom(S),atom_concat('^',SS,S),upcase_atom(SS,SU),atom_codes(SU,[N64]),N is N64-64,N>=0,!,to_char(N,C). +to_char(S,C):- atom(S),atom_codes(S,[N]),!,to_char(N,C). +to_char(N,C):- text_to_string_safe(N,Str),name_to_charcode(Str,Code),to_char(Code,C),!. +%to_char(N,'#\\'(S)):- to_number(N,NC),!,char_code_to_char(NC,S),!. +to_char(N,'#\\'(S)):- integer(N),!,char_code_to_char(N,S),!. +to_char(N,'#\\'(N)). + +char_code_int(Char,Code):- notrace_catch_fail(char_code(Char,Code)),!. +char_code_int(Char,Code):- notrace_catch_fail(atom_codes(Char,[Code])),!. +char_code_int(Char,Code):- atom(Char),name_to_charcode(Char,Code),!. +char_code_int(Char,Code):- var(Char),!,fbug(char_code_int(Char,Code)), only_debug(break). +char_code_int(Char,Code):- fbug(char_code_int(Char,Code)),only_debug(break). + +char_code_to_char(N,S):- atom(N),atom_codes(N,[_]),!,S=N. +char_code_to_char(N,S):- atom(N),!,S=N. +%char_code_to_char(N,S):- code_type(N,graph),atom_codes(S,[N]),atom(S),!. +%char_code_to_char(N,O):- \+ integer(N),char_type(N,_),!,N=O. +%char_code_to_char(32,' '):-!. +%char_code_to_char(N,N):- \+ code_type(N,graph),!. +%char_code_to_char(N,N):- code_type(N,white),!. +char_code_to_char(N,S):- notrace_catch_fail(atom_codes(S,[N])),!. + + + +name_to_charcode(Str,Code):-find_from_name(Str,Code),!. +name_to_charcode(Str,Code):-text_upper(Str,StrU),find_from_name2(StrU,Code). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1,H2,H3,H4|HEX]),memberchk(S,`Uu`),char_type(H4,xdigit(_)), + notrace_catch_fail(read_from_codes([48, 120,H1,H2,H3,H4|HEX],Code)). +name_to_charcode(Str,Code):-string_codes(Str,[S,H1|BASE10]),memberchk(S,`nd`),char_type(H1,digit), + notrace_catch_fail(read_from_codes([H1|BASE10],Code)). + +find_from_name(Str,Code):-string_codes(Str,Chars),lisp_code_name_extra(Code,Chars). +find_from_name(Str,Code):-lisp_code_name(Code,Str). +find_from_name(Str,Code):-string_chars(Str,Chars),lisp_code_name(Code,Chars). + +make_lisp_character(I,O):-quietly(to_char(I,O)). + +f_code_char(CH,CC):- zalwayzz(to_char(CH,CC)),!. +f_name_char(Name,CC):- zalwayzz((def_to_prolog_string(Name,CH),name_to_charcode(CH,Code),to_char(Code,CC))). +f_char_name(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz(code_to_name(CH,CC)). +f_char_int(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz('#\\'(C)=CH),(integer(C)->CC=C;char_code_int(C,CC)). +f_char_code(CH,CC):- f_char_int(CH,CC). + +to_prolog_char('#\\'(X),O):-!,to_prolog_char(X,O). +to_prolog_char(Code,Char):- number(Code),!,zalwayzz(char_code_int(Char,Code)),!. +%to_prolog_char(S,S):- atom(S),char_type(S,_),!. +to_prolog_char(Atom,Char):- name(Atom,[C|Odes]),!, + ((Odes==[] -> char_code_int(Char,C); + zalwayzz((text_to_string(Atom,String),name_to_charcode(String,Code),char_code_int(Char,Code))))). + +code_to_name(Char,Str):- number(Char),Char=Code,!,zalwayzz((code_to_name0(Code,Name),!,text_to_string(Name,Str))). +code_to_name(Char,Str):- zalwayzz((to_prolog_char(Char,PC),char_code_int(PC,Code),code_to_name0(Code,Name),!,text_to_string(Name,Str))). + +code_to_name0(Code,Name):-lisp_code_name_extra(Code,Name). +code_to_name0(Code,Name):-lisp_code_name(Code,Name). +code_to_name0(Code,Name):- Code<32, Ascii is Code+64,atom_codes(Name,[94,Ascii]). +code_to_name0(Code,Name):- code_type(Code,graph),!,atom_codes(Name,[Code]). + + +find_from_name2(Str,Code):-find_from_name(Str,Code). +find_from_name2(Str,Code):-lisp_code_name(Code,Chars),text_upper(Chars,Str). +find_from_name2(Str,Code):-lisp_code_name_extra(Code,Chars),text_upper(Chars,Str). + +text_upper(T,U):-text_to_string_safe(T,S),string_upper(S,U). + +lisp_code_name_extra(0,`Null`). +lisp_code_name_extra(1,`Soh`). +lisp_code_name_extra(2,`^B`). +lisp_code_name_extra(7,`Bell`). +lisp_code_name_extra(7,`bell`). +lisp_code_name_extra(8,`BCKSPC`). +lisp_code_name_extra(10,`Newline`). +lisp_code_name_extra(10,`LF`). +lisp_code_name_extra(10,`Linefeed`). +lisp_code_name_extra(11,`Vt`). +lisp_code_name_extra(27,`Escape`). +lisp_code_name_extra(27,`Esc`). +lisp_code_name_extra(32,`Space`). +lisp_code_name_extra(28,`fs`). +lisp_code_name_extra(13,`Ret`). + + +% @TODO undo this temp speedup +:- set_prolog_flag(all_lisp_char_names,false). +:- use_module('chars.data'). +/* + +(with-open-file (strm "lisp_code_names.pl" :direction :output :if-exists :supersede :if-does-not-exist :create) + (format strm ":- module(lisp_code_names,[lisp_code_name/2]).~%:- set_prolog_flag(double_quotes,chars).~%~%") + (loop for i from 0 to 655360 do (let ((cname (char-name (code-char i))) (uname4 (format () "U~4,'0X" i)) (uname8 (format () "U~8,'0X" i))) + (unless (equal cname uname4) (unless (equal cname uname8) (format strm "lisp_code_name(~A,~S).~%" i cname )))))) +*/ + + +%% remove_incompletes( :TermN, :TermCBefore) is det. +% +% Remove Incompletes. +% +remove_incompletes([],[]). +remove_incompletes([N=_|Before],CBefore):-var(N),!, + remove_incompletes(Before,CBefore). +remove_incompletes([NV|Before],[NV|CBefore]):- + remove_incompletes(Before,CBefore). + +:- export(extract_lvars/3). + +%= + +%% extract_lvars( ?A, ?B, ?After) is det. +% +% Extract Lvars. +% +extract_lvars(A,B,After):- + (get_varname_list(Before)->true;Before=[]), + remove_incompletes(Before,CBefore),!, + copy_lvars(A,CBefore,B,After),!. + +% copy_lvars( VAR,Vars,VAR,Vars):- var(VAR),!. + +%= + +%% copy_lvars( :TermVAR, ?Vars, :TermNV, ?NVars) is det. +% +% Copy Lvars. +% +copy_lvars(Term,Vars,Out,VarsO):- Term ==[],!,zalwayzz((Out=Term,VarsO=Vars)). +copy_lvars( VAR,Vars,Out,VarsO):- var(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars([H|T],Vars,[NH|NT],VarsO):- !, copy_lvars(H,Vars,NH,SVars),!, copy_lvars(T,SVars,NT,VarsO). +copy_lvars('?'(Inner),Vars,Out,VarsO):- !, copy_lvars(Inner,Vars,NInner,VarsO), zalwayzz((atom(NInner) -> atom_concat_or_rtrace('?',NInner,Out) ; Out = '?'(NInner))),!. +copy_lvars( VAR,Vars,Out,VarsO):- svar(VAR,Name)->zalwayzz(atom(Name)),!,zalwayzz(register_var(Name=Out,Vars,VarsO)). +copy_lvars( VAR,Vars,Out,VarsO):- \+ compound(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). +copy_lvars(Term,Vars,NTerm,VarsO):- + Term=..[F|Args], % decompose term + (svar(F,_)-> copy_lvars( [F|Args],Vars,NTerm,VarsO); + % construct copy term + (copy_lvars(Args,Vars,NArgs,VarsO), NTerm=..[F|NArgs])),!. + + + +%= + +%% svar( ?Var, ?NameU) is det. +% +% If this is a KIF var, convert to a name for prolog +% +svar(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar(SVAR,UP)). +svar(Var,Name):- var(Var),!,zalwayzz(svar_fixvarname(Var,Name)). +svar('$VAR'(Var),Name):-number(Var),Var > -1, !, zalwayzz(format(atom(Name),'~w',['$VAR'(Var)])),!. +svar('$VAR'(Name),VarName):-!,zalwayzz(svar_fixvarname(Name,VarName)). +svar('?'(Name),NameU):-svar_fixvarname(Name,NameU),!. +svar(_,_):- \+ kif_ok,!,fail. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('?',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. +svar([],_):-!,fail. +svar('#'(Name),NameU):-!,svar(Name,NameU),!. +svar('@'(Name),NameU):-svar_fixvarname(Name,NameU),!. +% svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('_',_,VAR),svar_fixvarname(VAR,Name),!. +svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('@',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. + + +:- export(svar_fixvarname/2). + +%= + +%% svar_fixvarname( ?SVARIN, ?UP) is det. +% +% Svar Fixvarname. +% + +svar_fixvarname(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar_fixvarname(SVAR,UP)). +svar_fixvarname(SVAR,UP):- svar_fixname(SVAR,UP),!. +svar_fixvarname(SVAR,UP):- fail,trace_or_throw(svar_fixname(SVAR,UP)). + +svar_fixname(Var,NameO):-var(Var),!,variable_name_or_ref(Var,Name),sanity(nonvar(Name)),!,svar_fixvarname(Name,NameO). +svar_fixname('$VAR'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('@'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('?'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname('block'(Name),UP):- !,svar_fixvarname(Name,UP). +svar_fixname(SVAR,SVARO):- ok_var_name(SVAR),!,SVARO=SVAR. +svar_fixname('??','_'):-!. +svar_fixname(QA,AU):-atom_concat_or_rtrace('??',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO),atom_concat_or_rtrace('_',AO,AU). +svar_fixname(QA,AO):-atom_concat_or_rtrace('?',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(QA,AO):-atom_concat_or_rtrace('@',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). +svar_fixname(NameU,NameU):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name),atom_number(Name,_),!. +svar_fixname(NameU,NameUO):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name), + \+ atom_number(Name,_),!,svar_fixvarname(Name,NameO),atom_concat_or_rtrace('_',NameO,NameUO). +svar_fixname(I,O):- + notrace(( + notrace(catch(fix_varcase(I,M0),_,fail)), + atom_subst(M0,'@','_AT_',M1), + atom_subst(M1,'?','_Q_',M2), + atom_subst(M2,':','_C_',M3), + atom_subst(M3,'-','_',O), + ok_var_name(O))),!. + +%= + +%% fix_varcase( ?I, ?O) is det. +% +% Fix Varcase. +% +fix_varcase(Word,Word):- atom_concat_or_rtrace('_',_,Word),!. +fix_varcase(Word,WordC):- !, atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +% the cut above stops the rest +fix_varcase(Word,Word):-upcase_atom(Word,UC),UC=Word,!. +fix_varcase(Word,WordC):-downcase_atom(Word,UC),UC=Word,!,atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). +fix_varcase(Word,Word). % mixed case + +:- export(ok_varname_or_int/1). + +%% ok_varname_or_int( ?Name) is det. +% +% Ok Varname. +% +ok_varname_or_int(Name):- atom(Name),!,ok_var_name(Name). +ok_varname_or_int(Name):- number(Name). + +%% ok_var_name( ?Name) is det. +% +% Ok Varname. +% +ok_var_name(Name):- + notrace(( + quietly_sreader(( atom(Name),atom_codes(Name,[C|_List]),char_type(C,prolog_var_start), + notrace(catch(read_term_from_atom(Name,Term,[variable_names(Vs)]),_,fail)), + !,var(Term),Vs=[RName=RVAR],!,RVAR==Term,RName==Name)))). + +%:- export(ok_codes_in_varname/1). +%ok_codes_in_varname([]). +%ok_codes_in_varname([C|List]):-!,ok_in_varname(C),ok_codes_in_varname(List). + +%:- export(ok_in_varname/1). +%ok_in_varname(C):-sym_char(C),\+member(C,`!@#$%^&*?()`). + + + +%= + +%% atom_upper( ?A, ?U) is det. +% +% Atom Upper. +% +atom_upper(A,U):-string_upper(A,S),quietly_sreader(((atom_string(U,S)))). + + +%= + +%% lisp_read_from_input( ?Forms) is det. +% +% Lisp Read Converted From Input. +% +lisp_read_from_input(Forms):-lisp_read(current_input,Forms),!. + +readCycL(Forms):-lisp_read(current_input,Forms). + +%% lisp_read_from_stream( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read_from_stream(Input,Forms):- + lisp_read(Input,Forms). + + +%% lisp_read( ?I, ?Forms) is det. +% +% Lisp Read Converted To Simple Form. +% +lisp_read(Input,Forms):- + lisp_read_typed(Input, Forms0),!, + quietly_sreader((zalwayzz(to_untyped(Forms0,Forms)))). + + + +%% lisp_read_typed( ?I, -Expr) is det. +% +% Lisp Read, Expression models DCG +% +lisp_read_typed(In,Expr):- track_stream(In,parse_sexpr(In,Expr)),!. +/* +lisp_read_typed(In,Expr):- fail, % old_stream_read + (read_line_to_codes(current_input,AsciiCodes), + (AsciiCodes==[]-> (at_end_of_stream(In) -> (Expr=end_of_file); lisp_read_typed(In,Expr)); + once(zalwayzz(parse_sexpr(AsciiCodes,Expr);lisp_read_typed(In,Expr));read_term_from_codes(AsciiCodes,Expr,[])))). +*/ + + +%= + +%% lowcase( :TermC1, :TermC2) is det. +% +% Lowcase. +% +lowcase([],[]). +lowcase([C1|T1],[C2|T2]) :- lowercase(C1,C2), lowcase(T1,T2). + + +%= + +%% lowercase( ?C1, ?C2) is det. +% +% Lowercase. +% +lowercase(C1,C2) :- C1 >= 65, C1 =< 90, !, C2 is C1+32. +lowercase(C,C). + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Interpretation + -------------- + + Declaratively, execution of a Lisp form is a relation between the + (function and variable) binding environment before its execution + and the environment after its execution. A Lisp program is a + sequence of Lisp forms, and its result is the sequence of their + results. The environment is represented as a pair of association + lists Fs-Vs, associating function names with argument names and + bodies, and variables with values. DCGs are used to implicitly + thread the environment state through. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + + +%= + +%% codelist_to_forms( ?AsciiCodesList, ?FormsOut) is det. +% +% Codelist Converted To Forms. +% +codelist_to_forms(AsciiCodesList,FormsOut):- + parse_sexpr(AsciiCodesList, Forms0),!, + zalwayzz(def_compile_all(Forms0, FormsOut)),!. + + +/* + +:- export(baseKB:rff/0). + +baseKB:rff:-baseKB:rff(dbginfo(n(first)),dbginfo(n(retry)),dbginfo(n(success)),dbginfo(n(failure))). + +:- export(baseKB:rff/4). +baseKB:rff(OnFirst,OnRetry,OnSuccess,OnFailure) :- CU = was(never,first), + call_cleanup(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + (nb_setarg(1,CU,first));((nb_setarg(1,CU,second)),!,fail)), + (nb_setarg(2,CU,second),process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure),dbginfo(cleanup(CU)))), + once(( + process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), + CU \= was(second, _))). + +:- export(process_rff/5). +process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure):- + dbginfo(next(CU)), + once(((CU==was(first,first)->OnFirst;true), + (CU==was(second,first)->OnRetry;true), + (CU==was(second,second)->OnFailure;true), + (CU==was(first,second)-e>OnSuccess;true))). + + +*/ + + +/* +:- prolog_load_context(directory,Dir), + DirFor = plarkc, + (( \+ user:file_search_path(DirFor,Dir)) ->asserta(user:file_search_path(DirFor,Dir));true), + absolute_file_name('../../../../',Y,[relative_to(Dir),file_type(directory)]), + (( \+ user:file_search_path(pack,Y)) ->asserta(user:file_search_path(pack,Y));true). +:- attach_packs. +:- initialization(attach_packs). +*/ + +% [Required] Load the Logicmoo Library Utils +% = % :- ensure_loaded(logicmoo(logicmoo_utils)). + +% % :- ensure_loaded(logicmoo(plarkc/mpred_cyc_api)). + + +:- export(fixvars/4). + +%= + +%% fixvars( ?P, ?VALUE2, :TermARG3, ?P) is det. +% +% Fixvars. +% +fixvars(P,_,[],P):-!. +fixvars(P,N,[V|VARS],PO):- + quietly_sreader((atom_string(Name,V))), + svar_fixvarname(Name,NB),Var = '$VAR'(NB), + substM(P,'$VAR'(N),Var,PM0), + substM(PM0,'$VAR'(Name),Var,PM), + % (get_varname_list(Vs)->true;Vs=[]), + % append(Vs,[Name=Var],NVs), + % nput_variable_names( NVs), + N2 is N + 1, fixvars(PM,N2,VARS,PO). + + + + +non_empty_atom(A1):- atom(A1),atom_length(A1,AL),!,AL>0. + +:- meta_predicate(sexpr_sterm_to_pterm(+,?,?)). +:- meta_predicate(sexpr_sterm_to_pterm_list(+,?,?)). + +is_relation_sexpr('=>'). +is_relation_sexpr('<=>'). +is_relation_sexpr('==>'). +is_relation_sexpr('<==>'). +is_relation_sexpr('not'). +is_relation_sexpr(typeGenls). + +is_va_relation('or'). +is_va_relation('and'). +%= + + +is_exact_symbol(N,_):- \+ atom(N),!,fail. +is_exact_symbol(N,P):- nonvar(P),!,is_exact_symbol(N,PP),zalwayzz(P=PP). +is_exact_symbol(':-',':-'). +is_exact_symbol('?-','?-'). +is_exact_symbol('??',_). + +%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). + +maybe_var(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. + +%% sexpr_sterm_to_pterm(?VAR, ?V) is det. +% +% S-expression Sterm Converted To Pterm. +% +sexpr_sterm_to_pterm(S,P):- sexpr_sterm_to_pterm(0,S,P). + + +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ compound(STERM), !. +sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ is_list(STERM), !. +% sexpr_sterm_to_pterm_pre_list(_,[S|STERM],[S|STERM]):- STERM == [], !. +sexpr_sterm_to_pterm_pre_list(TD,[S0|STERM0],[S|STERM]):- + (is_list(S0)->sexpr_sterm_to_pterm(TD,S0,S);sexpr_sterm_to_pterm_pre_list(TD,S0,S)), + sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM). + +sexpr_sterm_to_pterm(_TD,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm(_TD,S,P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,'#'(S),P):- is_exact_symbol(S,P),!. +sexpr_sterm_to_pterm(_TD,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. + +% sexpr_sterm_to_pterm(TD,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_var(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_sterm_to_pterm(TD,NewList,PTERM). +% sexpr_sterm_to_pterm(TD,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +/* +sexpr_sterm_to_pterm(TD,[S,Vars|TERM],PTERM):- nonvar(S), + call_if_defined(common_logic_snark:is_quantifier(S)), + zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST), + PTERM=..[S,Vars|PLIST])),!. +*/ + +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- var(S), TD1 is TD + 1, sexpr_sterm_to_pterm_pre_list(TD1,STERM0,STERM), sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. +sexpr_sterm_to_pterm(_,[S,STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(_,[S|STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. +sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), is_list(STERM), + next_args_are_lists_unless_string(S,NonList), + length(LEFT,NonList),append(LEFT,[List|RIGHT],STERM),is_list(List), + TD1 is TD+1, + sexpr_sterm_to_pterm_list(TD1,LEFT,PLEFTLIST), + sexpr_sterm_to_pterm_list(0,RIGHT,PRIGHTLIST), + append(PLEFTLIST,[List|PRIGHTLIST],PLIST), + s_univ(TD,PTERM,[S|PLIST]),!. + +sexpr_sterm_to_pterm(TD,STERM0,PTERM):- TD1 is TD+1,sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), + is_list(STERM),!, sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,PLIST),!. +sexpr_sterm_to_pterm(_TD,VAR,VAR). + +is_quoter('#BQ'):- is_common_lisp. +is_quoter('#COMMA'):- is_common_lisp. +is_quoter('quote'). + +next_args_are_lists_unless_string(defmacro,1). +next_args_are_lists_unless_string(defun,1). +next_args_are_lists_unless_string(let,0). +next_args_are_lists_unless_string('let*',0). + +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. +%sexpr_sterm_to_pterm(TD,[S],O):- is_ftVar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S],O):- nonvar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_ftVar(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- S==and,!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). +% sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_va_relation(S),!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). +%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_relation_sexpr(S),zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST),PTERM=..[S|PLIST])),!. +%sexpr_sterm_to_pterm(TD,STERM,PTERM):- STERM=..[S|TERM],sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. + +s_functor(F):- \+ atom(F), !,fail. +s_functor(F):- \+ atom_concat('?',_,F). + +s_univ(1,S,S):-!. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),length(ARGS,A),l_arity(F,A),P=..[F|ARGS]. +s_univ(0,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. +s_univ(_TD,P,S):-P=S. + +l_arity(F,A):- clause_b(arity(F,A)). +l_arity(function,1). +l_arity(quote,1). +l_arity('#BQ',1):- is_common_lisp. +l_arity(F,A):-current_predicate(F/A). +l_arity(_,1). + +%% sexpr_sterm_to_pterm_list(TD, ?VAR, ?VAR) is det. +% +% S-expression Converted To Pterm List. +% + +sexpr_sterm_to_pterm_list(TD,TERM,PTERMO):- is_list(TERM),append(BEFORE,[VAR],TERM),atom(VAR), + atom_concat_or_rtrace('@',RVAR,VAR),non_empty_atom(RVAR),svar_fixvarname(RVAR,V),!,append(BEFORE,'$VAR'(V),PTERM), + sexpr_sterm_to_pterm_list0(TD,PTERM,PTERMO). +sexpr_sterm_to_pterm_list(TD,TERM,PTERM):- sexpr_sterm_to_pterm_list0(TD,TERM,PTERM). + +sexpr_sterm_to_pterm_list0(_,VAR,VAR):-is_ftVar(VAR),!. +sexpr_sterm_to_pterm_list0(_,[],[]):-!. +sexpr_sterm_to_pterm_list0(TD,[S|STERM],[P|PTERM]):-sexpr_sterm_to_pterm(TD,S,P),sexpr_sterm_to_pterm_list0(TD,STERM,PTERM),!. +sexpr_sterm_to_pterm_list0(_,VAR,VAR). + + +/*=================================================================== +% input_to_forms/3 does less consistancy checking then conv_to_sterm + +Always a S-Expression: 'WFFOut' placing variables in 'VARSOut' + +|?-input_to_forms(`(isa a b)`,Clause,Vars). +Clause = [isa,a,b] +Vars = _h70 + +| ?- input_to_forms(`(isa a (b))`,Clause,Vars). +Clause = [isa,a,[b]] +Vars = _h70 + +|?-input_to_forms(`(list a b )`,Clause,Vars) +Clause = [list,a,b] +Vars = _h70 + +?- input_to_forms_debug("(=> (isa ?NUMBER ImaginaryNumber) (exists (?REAL) (and (isa ?REAL RealNumber) (equal ?NUMBER (MultiplicationFn ?REAL (SquareRootFn -1))))))"). + +?- input_to_forms_debug("(=> (isa ?PROCESS DualObjectProcess) (exists (?OBJ1 ?OBJ2) (and (patient ?PROCESS ?OBJ1) (patient ?PROCESS ?OBJ2) (not (equal ?OBJ1 ?OBJ2)))))"). + + +| ?- input_to_forms(`(genlMt A ?B)`,Clause,Vars). +Clause = [genlMt,'A',_h998] +Vars = [=('B',_h998)|_h1101] + +| ?- input_to_forms(` + (goals Iran (not (exists (?CITIZEN) + (and (citizens Iran ?CITIZEN) (relationExistsInstance maleficiary ViolentAction ?CITIZEN)))))` + ). + +Clause = [goals,Iran,[not,[exists,[_h2866],[and,[citizens,Iran,_h2866],[relationExistsInstance,maleficiary,ViolentAction,_h2866]]]]] +Vars = [=(CITIZEN,_h2866)|_h3347] + +| ?- input_to_forms_debug(` +(queryTemplate-Reln QuestionTemplate definitionalDisplaySentence + (NLPatternList + (NLPattern-Exact "can you") + (RequireOne + (NLPattern-Word Acquaint-TheWord Verb) + (NLPattern-Word Tell-TheWord Verb)) + (RequireOne + (NLPattern-Exact "me with") + (NLPattern-Exact "me what")) + (OptionalOne + (WordSequence "the term") "a" "an") + (NLPattern-Template NPTemplate :THING) + (OptionalOne "is" ) + (OptionalOne TemplateQuestionMarkMarker)) + (definitionalDisplaySentence :THING ?SENTENCE)) ` +). + +| ?- input_to_forms_debug(` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2))` + ). + +input_to_forms_debug("(=> (disjointDecomposition ?CLASS @ROW) (forall (?ITEM1 ?ITEM2) (=> (and (inList ?ITEM1 (ListFn @ROW)) (inList ?ITEM2 (ListFn @ROW)) (not (equal ?ITEM1 ?ITEM2))) (disjoint ?ITEM1 ?ITEM2))))"). + + +input_to_forms_debug( +` + (#$STemplate #$bioForProposal-short + (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) + (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) + (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2)) ` + ). + +% txt_to_codes("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X). +input_to_forms_debug("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X,Y). + +// ==================================================================== */ +:- export(current_input_to_forms/2). + + +%% input_to_forms( ?FormsOut, ?Vars) is det. +% +% Input Converted To Forms. +% +current_input_to_forms(FormsOut,Vars):- + current_input(In), + input_to_forms(In, FormsOut,Vars). + +show_wff_debug(Wff,Vs):- nonvar(Wff),Wff=(H=B),!,show_wff_debug((H:-B),Vs). +show_wff_debug(Wff,Vs):- fmt("\n"), + must_or_rtrace(portray_clause_w_vars(Wff,Vs,[])),!. + +% input_to_forms_debug(String):- sumo_to_pdkb(String,Wff),dbginfo(Wff),!. +input_to_forms_debug(String):- + input_to_forms_debug(String,['=']). + +input_to_forms_debug(String,M:Decoders):- + setup_call_cleanup( + fmt("% ========================\n"), + (get_varnames(Was), show_wff_debug(input=String,Was), + input_to_forms(String,Wff,Vs), + b_setval('$variable_names',Vs), + show_wff_debug(to_forms=Wff,Vs), + do_decoders(Wff,Vs,M,Decoders),!, + ignore((nonvar(Vs),Vs\==[], show_wff_debug(vars=Vs,Vs)))), + fmt("\n% ========================\n")). + +do_decoders(_,_,_,[]):-!. +do_decoders(Wff,Vs,M,[Decoder|Decoders]):- !, + ((M:call(Decoder,Wff,WffO), ignore((Wff \== WffO , show_wff_debug((M:Decoder:-WffO),Vs)))) + -> do_decoders(WffO,Vs,M,Decoders) + ; + (fmt(decoder_failed(M:Decoder)), + do_decoders(Wff,Vs,M,Decoders))). +do_decoders(Wff,Vs,M,Decoder):- do_decoders(Wff,Vs,M,[Decoder]). + +:- export(input_to_forms/2). +%% input_to_forms( ?In, ?FormsOut) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut):- + input_to_forms(Codes,FormsOut,Vars) -> + add_variable_names(Vars). + +:- export(input_to_forms/3). + +%% input_to_forms( ?In, ?FormsOut, ?Vars) is det. +% +% Get Input Converted To Forms. +% +input_to_forms(Codes,FormsOut,Vars):- + push_varnames(_) -> + quietly_sreader((input_to_forms0(Codes,FormsOut,Vars))). + +is_variable_names_safe(Vars):- var(Vars),!. +is_variable_names_safe([N=V|Vars]):- !, + is_name_variable_safe(N,V) -> + is_variable_names_safe(Vars). +is_variable_names_safe([]). + +is_name_variable_safe(N,V):- + ok_var_name(N)-> var(V). + + +get_varnames(Was):- nb_current('$variable_names',Was)->true;Was=[]. + +push_varnames(New):- + (nonvar(New)-> b_setval('$variable_names',New) + ; (get_varnames(Was), Was = New, b_setval('$variable_names',Was))). + +add_variable_names(Vars):- var(Vars),!. +add_variable_names(N=V):- !, ignore(set_varname_s(N,V)). +add_variable_names([NV|Vars]):- add_variable_names(NV),!, add_variable_names(Vars). +add_variable_names([]). + +set_varname_s(N,V):- get_varnames(Was), set_varname4(Was,N,V,New),b_setval('$variable_names',New). + +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), NN==N,!, (V=VV->true;setarg(2,NV,V)), New = Was. +set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), VV==V,!, (N=NN->true;setarg(1,NV,N)), New = Was. +set_varname4(Was,N,V,[N=V|Was]). + + +set_variable_names_safe(Vars):- + is_variable_names_safe(Vars)-> + b_setval('$variable_names',Vars); true. + +input_to_forms0(Codes,FormsOut,Vars):- + % is_openable(Codes),!, + parse_sexpr(Codes, Forms0),!, + once((to_untyped(Forms0, Forms1), + extract_lvars(Forms1,FormsOut,Vars))). + +input_to_forms0(Forms,FormsOut,Vars):- + (to_untyped(Forms, Forms1) -> + extract_lvars(Forms1,FormsOut,Vars)-> true),!. + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Lisprolog -- Interpreter for a simple Lisp. Written in Prolog. + Written Nov. 26th, 2006 by Markus Triska (triska@gmx.at). + Public domain code. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +%:- style_check(-singleton). +%:- style_check(-discontiguous). +% :- style_check(-atom). +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Parsing +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + + +tstl:- tstl('./ontologyportal_sumo/Merge.kif'), + tstl('./ontologyportal_sumo/Translations/relations-en.txt'), + tstl('./ontologyportal_sumo/english_format.kif'), + tstl('./ontologyportal_sumo/domainEnglishFormat.kif'), + tstl('./ontologyportal_sumo/Mid-level-ontology.kif'), + !. + +writeqnl(O):- writeq(O),nl. + + + +%:- fixup_exports. +%:- endif. + diff --git a/metta_vspace/pyswip-want/metta_rust.pl b/metta_vspace/pyswip-want/metta_rust.pl new file mode 100755 index 00000000..fcae66a4 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_rust.pl @@ -0,0 +1,5 @@ + + +:- ensure_loaded(metta_python). +:- ensure_loaded(metta_interp). + diff --git a/metta_vspace/pyswip-want/metta_server.pl b/metta_vspace/pyswip-want/metta_server.pl new file mode 100755 index 00000000..94bee387 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_server.pl @@ -0,0 +1,95 @@ + +:- use_module(library(socket)). +:- use_module(library(thread)). + +call_wdet(Goal,WasDet):- call(Goal),deterministic(WasDet). +% Helper to parse Server and Port +parse_server_port(ServerPort,DefaultPort, Server, Port) :- + ( ServerPort = Server:Port -> true + ; integer(ServerPort) -> Server = localhost, Port = ServerPort + ; Server = ServerPort, Port = DefaultPort % Default port if none specified + ). + +start_vspace_server(Port) :- + thread_create(run_vspace_server(Port),_,[detached(true),alias(vspace_server)]). + +run_vspace_server(Port) :- + tcp_socket(Socket), tcp_bind(Socket, Port), tcp_listen(Socket, 5), tcp_open_socket(Socket, ListenFd), + fbug(run_vspace_server(Port)), + accept_vspace_connections(ListenFd). + +accept_vspace_connections(ListenFd) :- + tcp_accept(ListenFd, ClientFd, ClientAddr), + format(atom(ThreadAlias), 'client_~w', [ClientAddr]), + thread_create(setup_call_cleanup( + tcp_open_socket(ClientFd, Stream), + ignore(handle_vspace_client(Stream)), + catch(close(Stream),_,true)), _, [detached(true), alias(ThreadAlias)] ), + accept_vspace_connections(ListenFd). + +handle_vspace_client(Stream) :- + read_term(Stream, Goal,[]), + ( Goal \= end_of_file + -> ( catch(call_wdet(Goal,WasDet), Error, true) + *-> ( var(Error) -> send_term(Stream, success(Goal,WasDet)) ; send_term(Stream,error(Error))) + ;send_term(Stream, 'failed'))), + handle_vspace_client(Stream). + +% Start the server automatically on a default port or a specified port +:- dynamic vspace_port/1. +start_vspace_server:- ( vspace_port(Port) -> start_vspace_server(Port); start_vspace_server(3023) ). + +:- initialization(start_vspace_server). + +% Connects to the server and sends the goal +remote_call(ServerPort, Goal) :- + setup_call_cleanup( + (connect_to_server(ServerPort, Stream),send_term(Stream, Goal)), + read_response(Stream,Goal), + close(Stream)). + +% Helper to establish connection +connect_to_server(HostPort, Stream) :- + parse_server_port(HostPort, 3023, Host, Port), + tcp_socket(Socket), + tcp_connect(Socket, Host:Port), + tcp_open_socket(Socket, Stream). + +% Helper to send goal and receive response +send_term(Stream, Goal) :- write_canonical(Stream, Goal),writeln(Stream, '.'), flush_output(Stream). + + +% Read and process the server's response +read_response(Stream,Goal) :- + flush_output(Stream), + repeat, read_term(Stream,Response,[]), + (Response == failed -> (!,fail) ; + (Response = error(Throw) -> throw(Throw) ; + ((Response = success(Goal,WasDet)), + (WasDet==true-> (!, true) ; true)))). + +% Example usage +% ?- remote_call('localhost', member(X, [1,2,3])). + +:- dynamic predicate_server/2. % Maps predicate to server + +% Registers a predicate to a server +register_predicate_server(Predicate, Server) :- assertz(predicate_server(Predicate, Server)). + +% Meta-interpreter with cut handling +execute_goal(Goal, IsCut) :- + predicate_server(Goal, Server), !, + remote_call(Server, Goal), % If the goal is registered for a server, call remotely + IsCut = _. +execute_goal(!, IsCut) :- !, IsCut = cut. % Handle cuts +execute_goal(Goal, IsCut) :- predicate_property(Goal,numberr_of_clauses(_)),!, + clause(Goal, Body), % Retrieve the clause body for the goal + execute_goal(Body, IsCut), + (nonvar(IsCut)->!;true). +execute_goal((SubGoal1, SubGoal2), IsCut) :- !, execute_goal(SubGoal1, IsCut), execute_goal(SubGoal2, IsCut). +execute_goal((SubGoal1; SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut); execute_goal(SubGoal2, IsCut)). +execute_goal((SubGoal1 -> SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut) -> execute_goal(SubGoal2, IsCut)). +execute_goal(findall(X, Y, Z), _) :- !, findall(X, execute_goal(Y, _), Z). +execute_goal(forall(X, Y), _) :- !, forall(execute_goal(X, _), execute_goal(Y, _)). +execute_goal(SubGoal, _IsCut) :- call_wdet(SubGoal, _WasDet). + diff --git a/metta_vspace/pyswip-want/metta_space.pl b/metta_vspace/pyswip-want/metta_space.pl new file mode 100755 index 00000000..954c28dc --- /dev/null +++ b/metta_vspace/pyswip-want/metta_space.pl @@ -0,0 +1,679 @@ +:- encoding(iso_latin_1). +:- flush_output. +:- setenv('RUST_BACKTRACE',full). +:- ensure_loaded(metta_compiler). +%:- ensure_loaded(metta_compiler). +% TODO move non flybase specific code between here and the compiler +:- ensure_loaded(flybase_main). + +:- multifile(is_pre_statistic/2). +:- dynamic(is_pre_statistic/2). +save_pre_statistic(Name):- is_pre_statistic(Name,_)-> true; (statistics(Name,AS),term_number(AS,FN),assert(is_pre_statistic(Name,FN))). +pre_statistic(N,V):- is_pre_statistic(N,V)-> true ; V = 0. +post_statistic(N,V):- statistics(N,VV),term_number(VV,FV),pre_statistic(N,WV), V0 is FV-WV, (V0<0 -> V = 0 ; V0=V). +term_number(T,N):- sub_term(N,T),number(N). + + +call_match([G]):-!, call(G). +call_match([G|GG]):- !, call(G), call_match(GG). +call_match(G):- call(G). + + +:- dynamic(repeats/1). +:- dynamic(not_repeats/1). +assert_new(P):- call(P),!,assert_new1(repeats(P)). +assert_new(P):- assert(P), flag(assert_new,TA,TA+1),assert_new1(not_repeats(P)),!. + +retract1(P):- \+ call(P),!. +retract1(P):- ignore(\+ retract(P)). + +assert_new1(P):- \+ \+ call(P),!. +assert_new1(P):- assert(P). + + +:- dynamic(fb_pred/3). +:- dynamic(mod_f_a/3). +decl_m_fb_pred(Mod,Fn,A):- var(Mod),!,mod_f_a(Mod,Fn,A). +decl_m_fb_pred(Mod,Fn,A):- mod_f_a(Mod,Fn,A)->true;(dynamic(Mod:Fn/A),assert(mod_f_a(Mod,Fn,A))). +:- dynamic(fb_pred_file/3). +decl_fb_pred(Fn,A):- + (fb_pred(Fn,A)-> true; (dynamic(Fn/A),assert(fb_pred(Fn,A)))), + ignore((nb_current(loading_file,File), + (fb_pred_file(Fn,A,File)-> true; assert(fb_pred_file(Fn,A,File))))). +% Import necessary libraries +:- use_module(library(readutil)). + + +skip(_). + +% =============================== +% MeTTa Python incoming interface +% =============================== + +% ============================ +% %%%% Atom Manipulations +% ============================ + +% Clear all atoms from a space +'clear-atoms'(SpaceNameOrInstance) :- + debug_metta(['clear-atoms',SpaceNameOrInstance]), + space_type_method(Type,clear_space,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance). + +% Add an atom to the space +'add-atom'(SpaceNameOrInstance, Atom) :- % debug_metta(['add-atom',SpaceNameOrInstance, Atom]), + space_type_method(Type,add_atom,Method), call(Type,SpaceNameOrInstance),!, + if_t((SpaceNameOrInstance\=='&self' ; Type\=='is_asserted_space'), + debug_metta(['type-method',Type,Method,SpaceNameOrInstance,Atom])), + call(Method,SpaceNameOrInstance,Atom). +% Add Atom +'add-atom'(Environment, AtomDeclaration, Result):- eval_args(['add-atom', Environment, AtomDeclaration], Result). + +% remove an atom from the space +'remove-atom'(SpaceNameOrInstance, Atom) :- + debug_metta(['remove-atom',SpaceNameOrInstance, Atom]), + space_type_method(Type,remove_atom,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance,Atom). +% Remove Atom +'remove-atom'(Environment, AtomDeclaration, Result):- eval_args(['remove-atom', Environment, AtomDeclaration], Result). + +% Add an atom to the space +'replace-atom'(SpaceNameOrInstance, Atom, New) :- + debug_metta(['replace-atom',SpaceNameOrInstance, Atom, New]), + space_type_method(Type,replace_atom,Method), call(Type,SpaceNameOrInstance),!, + debug_metta(['type-method',Type,Method]), + call(Method,SpaceNameOrInstance,Atom, New). +% Replace Atom +'atom-replace'(Environment, OldAtom, NewAtom, Result):- eval_args(['atom-replace', Environment, OldAtom, NewAtom], Result). + +% Count atoms in a space +'atom-count'(SpaceNameOrInstance, Count) :- + debug_metta(['atom-count',SpaceNameOrInstance]), + space_type_method(Type,atom_count,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance,Count), + debug_metta(['type-method-result',Type,Method,Count]). +% Count Atoms +'atom-count'(Environment, Count):- eval_args(['atom-count', Environment], Count). + +% Fetch all atoms from a space +'get-atoms'(SpaceNameOrInstance, AtomsL) :- + debug_metta(['get-atoms',SpaceNameOrInstance]), + space_type_method(Type,get_atoms,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, AtomsL), + length(AtomsL,Count), + debug_metta(['type-method-result',Type,Method,Count]). +% Get Atoms +'get-atoms'(Environment, Atoms):- eval_args(['get-atoms', Environment], Atoms). + +% Iterate all atoms from a space +'atoms_iter'(SpaceNameOrInstance, Iter) :- + debug_metta(['atoms_iter',SpaceNameOrInstance]), + space_type_method(Type,atoms_iter,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, Iter), + debug_metta(['type-method-result',Type,Method,Iter]). + +% Match all atoms from a space +'atoms_match'(SpaceNameOrInstance, Atoms, Template, Else) :- + space_type_method(Type,atoms_match,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, Atoms, Template, Else), + debug_metta(['type-method-result',Type,Method,Atoms, Template, Else]). + + +% Query all atoms from a space +'space_query'(SpaceNameOrInstance, QueryAtom, Result) :- + space_type_method(Type,query,Method), call(Type,SpaceNameOrInstance),!, + call(Method,SpaceNameOrInstance, QueryAtom, Result), + debug_metta(['type-method-result',Type,Method,Result]). + + +subst_pattern_template(SpaceNameOrInstance, Pattern, Template) :- + debug_metta([subst_pattern_template,SpaceNameOrInstance, Pattern, Template]), + 'atoms_match'(SpaceNameOrInstance, Pattern, Template, []). + +/* +space_query_vars(SpaceNameOrInstance, Query, Vars) :- is_as_nb_space(SpaceNameOrInstance),!, + fetch_or_create_space(SpaceNameOrInstance, Space), + call_metta(Space,Query,Vars). +*/ +:- dynamic(was_asserted_space/1). + +was_asserted_space('&flybase'). +was_asserted_space('&self'). +was_asserted_space('&attentional_focus'). +was_asserted_space('&belief_events'). +was_asserted_space('&goal_events'). +was_asserted_space('&tempset'). +was_asserted_space('&concepts'). +was_asserted_space('&belief_events'). + +is_asserted_space(X):- was_asserted_space(X). +is_asserted_space(X):- \+ is_as_nb_space(X), \+ py_named_space(X),!. + +is_python_space_not_prolog(X):- \+ is_as_nb_space(X), \+ is_asserted_space(X). + +:- dynamic(is_python_space/1). + +:- dynamic(py_named_space/1). + +%py_named_space('&self'). +%py_named_space('&vspace'). +% Function to check if an atom is registered as a space name +:- dynamic is_registered_space_name/1. +is_as_nb_space('&nb'). +is_as_nb_space(G):- is_valid_nb_space(G) -> true ; + is_registered_space_name(G),nb_current(G,S),is_valid_nb_space(S). + +is_nb_space(G):- nonvar(G), is_as_nb_space(G). +% ============================ +% %%%% Pattern Matching +% ============================ +% Pattern Matching with an else branch +'match'(Environment, Pattern, Template, ElseBranch, Result):- eval_args(['match', Environment, Pattern, Template, ElseBranch], Result). +% Pattern Matching without an else branch +'match'(Environment, Pattern, Template, Result):- eval_argss(['match', Environment, Pattern, Template], Result). +%'match'(_Environment, Pattern, Template, Result):- callable(Pattern),!, call(Pattern),Result=Template. +%'match'(_Environment, Pattern, Template, Result):- !, is_True(Pattern),Result=Template. + + +'new-space'(Space):- gensym('hyperon::space::DynSpace@_',Name), fetch_or_create_space(Name, Space). + +:- dynamic(is_python_space/1). +% =============================== +% MeTTa Python incoming interface +% =============================== + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_as_nb_space,new_space,init_space). +space_type_method(is_as_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_as_nb_space,add_atom,add_nb_atom). +space_type_method(is_as_nb_space,remove_atom,remove_nb_atom). +space_type_method(is_as_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_as_nb_space,atom_count,atom_nb_count). +space_type_method(is_as_nb_space,get_atoms,get_nb_atoms). +%space_type_method(is_as_nb_space,get_atoms,arg(1)). +space_type_method(is_as_nb_space,atom_iter,atom_nb_iter). +%space_type_method(is_as_nb_space,query,space_nb_query). + +% Clear all atoms from a space +clear_nb_atoms(SpaceNameOrInstance) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + nb_setarg(1, Space, []). + +% Add an atom to the space +add_nb_atom(SpaceNameOrInstance, Atom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + NewAtoms = [Atom | Atoms], + nb_setarg(1, Space, NewAtoms). + +% Count atoms in a space +atom_nb_count(SpaceNameOrInstance, Count) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + length(Atoms, Count). + +% Remove an atom from a space +remove_nb_atom(SpaceNameOrInstance, Atom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + select(Atom, Atoms, UpdatedAtoms), + nb_setarg(1, Space, UpdatedAtoms). + +% Fetch all atoms from a space +get_nb_atoms(SpaceNameOrInstance, Atoms) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms). + +% Replace an atom in the space +replace_nb_atom(SpaceNameOrInstance, OldAtom, NewAtom) :- + fetch_or_create_space(SpaceNameOrInstance, Space), + arg(1, Space, Atoms), + ( (select(Found, Atoms, TempAtoms),OldAtom=@=Found) + -> NewAtoms = [NewAtom | TempAtoms], + nb_setarg(1, Space, NewAtoms) + ; false + ). + + + +% Function to confirm if a term represents a space +is_valid_nb_space(Space):- compound(Space),functor(Space,'Space',_). + +% Find the original name of a given space +space_original_name(Space, Name) :- + is_registered_space_name(Name), + nb_current(Name, Space). + +% Register and initialize a new space +init_space(Name) :- + Space = 'Space'([]), + asserta(is_registered_space_name(Name)), + nb_setval(Name, Space). + +fetch_or_create_space(Name):- fetch_or_create_space(Name,_). +% Fetch an existing space or create a new one +fetch_or_create_space(NameOrInstance, Space) :- + ( atom(NameOrInstance) + -> (is_registered_space_name(NameOrInstance) + -> nb_current(NameOrInstance, Space) + ; init_space(NameOrInstance), + nb_current(NameOrInstance, Space)) + ; is_valid_nb_space(NameOrInstance) + -> Space = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_space(Space). + + +% Match Pattern in Space and produce Template +'match'(Space, Pattern, Template) :- + 'get-atoms'(Space, Atoms), + 'match-pattern'(Atoms, Pattern, Template). + +% Simple pattern match +'match-pattern'([], _, []). +'match-pattern'([H |_T], H, H) :- !. +'match-pattern'([_H| T], Pattern, Template) :- 'match-pattern'(T, Pattern, Template). + +%is_python_space(X):- python_object(X). + +ensure_space(X,Y):- catch(ensure_space_py(X,Y),_,fail),!. +ensure_space(_N,_V):- fail. + +% =============================== +% Clause Database interface +% =============================== +%debug_metta(Call):- skip(Call). +if_metta_debug(Goal):- getenv('VSPACE_VERBOSE','2'),!,ignore(call(Goal)). +%if_metta_debug(_):-!. +if_metta_debug(Goal):- !,ignore(call(Goal)). +debug_metta(Term):- notrace(if_metta_debug((format('~N; ~@~n',[write_src(Term)])))). +debug_metta(Msg,Term):- notrace(if_metta_debug((format('~N; ~w: ~@~n',[Msg,write_src(Term)])))),!. + +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_asserted_space,new_space,init_space). +space_type_method(is_asserted_space,clear_space,clear_nb_atoms). +space_type_method(is_asserted_space,add_atom,metta_assertdb_add). +space_type_method(is_asserted_space,remove_atom,metta_assertdb_rem). +space_type_method(is_asserted_space,replace_atom,metta_assertdb_replace). +space_type_method(is_asserted_space,atom_count,metta_assertdb_count). +space_type_method(is_asserted_space,get_atoms,metta_assertdb_get_atoms). +space_type_method(is_asserted_space,atom_iter,metta_assertdb_iter). +%space_type_method(is_asserted_space,query,space_nb_query). + +%:- dynamic(for_metta/2). +%for_metta(_,T):- fb_pred(F,A),functor(T,F,A),call(T). +metta_assertdb_ls(KB):-listing(asserted_metta_atom(KB,_)). +metta_assertdb_add(KB,Atom):- subst_vars(Atom,New), + decl_m_fb_pred(user,asserted_metta_atom,2), + MP = asserted_metta_atom(KB,New), + assert_new(MP). +metta_assertdb_rem(KB,Old):- metta_assertdb_del(KB,Old). +metta_assertdb_del(KB,Atom):- subst_vars(Atom,Old), decl_m_fb_pred(user,asserted_metta_atom,2), MP = asserted_metta_atom(KB,Old), + copy_term(MP,Copy), clause(MP,true,Ref), MP=@= Copy, !, erase(Ref). % ,metta_assertdb('DEL',Old). +metta_assertdb_replace(KB,Old,New):- metta_assertdb_del(KB,Old), metta_assertdb_add(KB,New). +metta_assertdb_count(KB,Count):- + must_det_ll(( + decl_m_fb_pred(user,asserted_metta_atom,2), full_atom_count(SL1), + MP = asserted_metta_atom(KB,_), + predicate_property(MP,number_of_clauses(SL2)), + predicate_property(MP,number_of_rules(SL3)), + %metta_assertdb_ls(KB), + Count is SL1 + SL2 - SL3)),!. +metta_assertdb_count(_KB,0):-!. +%metta_assertdb_count(KB,Count):- writeln(metta_assertdb_count_in(KB,Count)), findall(Atom,for_metta(KB,Atom),AtomsL),length(AtomsL,Count),writeln(metta_assertdb_count_out(KB,Count)). +metta_assertdb_iter(KB,Atoms):- decl_m_fb_pred(user,asserted_metta_atom,2), asserted_metta_atom(KB,Atoms). + + + +metta_iter_bind(KB,Query,Vars,VarNames):- + term_variables(Query,QVars), + align_varnames(VarNames,Vars), + TV = debug_metta(['match',KB,Query,QVars,Vars,VarNames]), +% \+ \+ (numbervars(TV,0,_,[]),print(tv=TV),nl), + ignore(QVars=Vars), +% \+ \+ (numbervars(TV,0,_,[]),print(qv=TV),nl), + \+ \+ (%numbervars(TV,0,_,[]), + writeq(av=TV),nl), + space_query_vars(KB,Query,TF),TF\=='False'. + + +% Query from hyperon.base.GroundingSpace +space_query_vars(KB,Query,Vars):- is_asserted_space(KB),!, + decl_m_fb_pred(user,asserted_metta_atom,2), + call_metta(KB,Query,Vars), + debug_metta('RES',space_query_vars(KB,Query,Vars)). + + +metta_assertdb_get_atoms(KB,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Atom,asserted_metta_atom(KB,Atom),AtomsL). +/* + +%metta_assertdb_iter_bind(KB,Query,Template,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Template,asserted_metta_atom(KB,Query),AtomsL). +metta_assertdb_iter_bind(KB,Query,Vars):- + ignore(term_variables(Query,Vars)), + print(metta_assertdb(['match',KB,Query,Vars])),nl, + decl_m_fb_pred(user,asserted_metta_atom,2), (asserted_metta_atom(KB,Query)*->true;call_metta_assertdb(KB,Query,Vars)), + metta_assertdb('RES',metta_assertdb_iter_bind(KB,Query,Vars)). +%metta_assertdb_iter_bind(KB,Atom,Template):- metta_assertdb_stats, findall(Template,metta_assertdb_iter(KB,Atom),VarList). + +metta_assertdb_iter_bind(KB,Atoms,Vars):- + metta_assertdb_stats, + term_variables(Atoms,AVars), + metta_assertdb_iter(KB,Atoms), ignore(AVars = Vars). +*/ + + +align_varnames(VarNames,Vars):- + list_to_set(VarNames,NameSet), + merge_named_vars(NameSet,VarNames,Vars). + +merge_named_vars([],_VarNames,_Vars):-!. +merge_named_vars([N|NameSet],VarNames,Vars):- + merge_named(N,_V,VarNames,Vars), + merge_named_vars(NameSet,VarNames,Vars). +%merge_named_vars(_,_,_). + +merge_named(_,_,[],[]):-!. +merge_named(N,V,[N|VarNames],[V|Vars]):- + merge_named(N,V,VarNames,Vars). + + +call_metta( KB,Query,_Vars):- metta_atom(KB,Query). +call_metta(_KB,Query,_Vars):- metta_to_pyswip([],Query,Call),!, + print(user:Call),nl,user:call(Call). + +metta_to_pyswip(_PS,Query,Call):- var(Query),!,Call=Query. +metta_to_pyswip(_PS,Query,Call):- \+ compound(Query),!,Call=Query,!. +metta_to_pyswip(PS,Query,Call):- is_list(Query),Query=[Q|Uery],!,cmpd_to_pyswip(PS,Q,Uery,Call). +metta_to_pyswip(PS,Query,Call):- Query=..[Q|Uery], cmpd_to_pyswip(PS,Q,Uery,Call). + +cmpd_to_pyswip(PS,Q,Uery,Call):- atom(Q),maplist(metta_to_pyswip([Q|PS]),Uery,Cery),Call=..[Q|Cery]. +cmpd_to_pyswip(PS,"and",Uery,Call):- maplist(metta_to_pyswip(PS),Uery,Args),list_to_conjuncts(Args,Call). + + +'show-metta-def'(Pred, []):- + 'get-metta-src'(Pred,[_|SrcL]), + maplist(write_src_nl,SrcL). + +write_src_nl(Src):- format('~N'),write_src(Src),format('~N'). + +%'get-metta-src'(Pred,[Len|SrcL]):- findall(['AtomDef',Src],'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). +'get-metta-src'(Pred,[Len|SrcL]):- findall(Src,'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). +'get-metta-src1'(Pred,Src):- + current_self(Space), + metta_atom(Space,[F,A|List]), + once((sub_var(Pred,A)->Src = [F,A|List];sub_var(Pred,F)->Src = [F,A|List])). + +% is a quine +'AtomDef'(X,['AtomDef',X]). + +% =============================== +% PRINTERS +% =============================== + + +pp_sax(V) :- is_final_write(V),!. +pp_sax(S) :- \+ allow_concepts,!, write_src(S). +pp_sax(S) :- is_englishy(S),!,print_concept("StringValue",S). +pp_sax(S) :- symbol_length(S,1),symbol_string(S,SS),!,print_concept("StringValue",SS). +pp_sax(S) :- is_an_arg_type(S,T),!,print_concept("TypeNode",T). +pp_sax(S) :- has_type(S,T),!,format('(~wValueNode "~w")',[T,S]). +pp_sax(S) :- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,(Aft>0->format('(~wValueNode "~w")',[Type,S]);format('(TypeNode "~w")',[Type])). +pp_sax(S) :- print_concept("ConceptNode",S). + +print_concept( CType,V):- allow_concepts, !, write("("),write(CType),write(" "),ignore(with_concepts(false,write_src(V))),write(")"). +print_concept(_CType,V):- ignore(write_src(V)). +write_val(V):- number(V),!, write_src(V). +write_val(V):- compound(V),!, write_src(V). +write_val(V):- write('"'),write(V),write('"'). + +% Base case: atoms are printed as-is. +pp_as(V) :- \+ \+ pp_sex(V),flush_output. +pp_sex(V) :- is_final_write(V),!. +pp_sex('!'(V)) :- write('!'),!,pp_sex(V). +pp_sex('exec'(V)) :- write('!'),!,pp_sex(V). +%pp_sex('') :- format('(EmptyNode null)',[]). +pp_sex('') :- !, format('""',[]). +pp_sex([]):- !, write('()'). +pp_sex('='(N,V)):- allow_concepts, !, format("~N;; ~w == ~n",[N]),!,pp_sex(V). +pp_sex(V) :- (number(V) ; is_dict(V)), !, print_concept('ValueAtom',V). +%pp_sex(V) :- (symbol(V),symbol_number(V,N)), !, print_concept('ValueAtom',N). +pp_sex(S) :- symbol(S), always_dash_functor(S,D), pp_sax(D),!. +pp_sex(S) :- string(S),!, print_concept('StringValue',S). +% Lists are printed with parentheses. +pp_sex(V) :- \+ compound(V), !, format('~p',[V]). +pp_sex(V) :- V = '$VAR'(_), !, format('$~p',[V]). +pp_sex('!'(V)) :- write('!'),!,pp_sex(V). +pp_sex(listOf(S,_)) :- !,pp_sex(listOf(S)). +pp_sex(listOf(S)) :- !,format('(ListValue ~@)',[pp_sex(S)]). + +pp_sex([H|T]) :- \+ no_src_indents, atom(H),member(H,['If','cond','let','let*']),!, + with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T])))). + +pp_sex([H|T]) :- is_list(T), length(T,Args),Args =< 2, fail, + wots(SS,((with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')')))))), + ((atom_length(SS,Len),Len < 20) ->write(SS); + with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T]))))),!. +/* + +pp_sex([H|T]) :- is_list(T),atom(H),upcase_atom(H,U),downcase_atom(H,U),!, + with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')'))). + +%pp_sex([H,B,C|T]) :- T==[],!, +% with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression([B,C]), write(')'))). +*/ +pp_sex(V) :- no_src_indents,!,pp_sexi(V). + +pp_sex(V) :- w_proper_indent(2,w_in_p(pp_sexi(V))). + +:- nb_setval(src_indents,'True'). +no_src_indents:- nb_setval(src_indents,'False'). + %option_else(src_indents,TF,true),!,TF=='False'. + +pp_sexi_l([H,S]):-H=='[...]', write('['),print_items_list(S),write(' ]'). +pp_sexi_l([H,S]):-H=='{...}', write('{'),print_items_list(S),write(' }'). +pp_sexi_l([H|T]):-write('('), pp_sex(H), print_list_as_sexpression(T), write(')'). + +print_items_list(X):- is_list(X),!,print_list_as_sexpression(X). +print_items_list(X):- write_src(X). + +pp_sexi(V) :- is_final_write(V),!. +pp_sexi([H|T]) :- is_list(T),!,pp_sexi_l([H|T]). +% Compound terms. +%pp_sex(Term) :- compound(Term), Term =.. [Functor|Args], write('('),format('(~w ',[Functor]), write_args_as_sexpression(Args), write(')'). +%pp_sex(Term) :- Term =.. ['=',H|Args], length(Args,L),L>2, write('(= '), pp_sex(H), write('\n\t\t'), maplist(pp_sex(2),Args). +pp_sexi(Term) :- Term==[],!,write('()'). +pp_sexi(Term) :- compound_name_arity(Term,F,0),!,pp_sexi([F]). +pp_sexi(Term) :- Term =.. [Functor|Args], always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. +pp_sexi(Term) :- allow_concepts, Term =.. [Functor|Args], format('(EvaluationLink (PredicateNode "~w") (ListLink ',[Functor]), write_args_as_sexpression(Args), write('))'),!. +pp_sexi(Term) :- Term =.. [Functor|Args], + always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. + +pp_sex(2,Result):- write('\t\t'),pp_sex(Result). + + +current_column(Column) :- current_output(Stream), line_position(Stream, Column),!. +current_column(Column) :- stream_property(current_output, position(Position)), stream_position_data(column, Position, Column). +min_indent(Sz):- current_column(Col),Col>Sz,nl,indent_len(Sz). +min_indent(Sz):- current_column(Col),Need is Sz-Col,indent_len(Need),!. +min_indent(Sz):- nl, indent_len(Sz). +indent_len(Need):- forall(between(1,Need,_),write(' ')). + +w_proper_indent(N,G):- + flag(w_in_p,X,X), %(X==0->nl;true), + XX is (X*2)+N,setup_call_cleanup(min_indent(XX),G,true). +w_in_p(G):- setup_call_cleanup(flag(w_in_p,X,X+1),G,flag(w_in_p,_,X)). + + +always_dash_functor(A,B):- once(dash_functor(A,B)),A\=@=B,!. +always_dash_functor(A,A). + +dash_functor(A,C):- \+ symbol(A),!,C=A. +dash_functor(A,C):- fail, p2m(A,B),A\==B,!,always_dash_functor(B,C). +dash_functor(Functor,DFunctor):- + symbol(Functor), atomic_list_concat(L,'-',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'-',DFunctor). +dash_functor(Functor,DFunctor):- fail, + symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'-',DFunctor). +dash_functor(Functor,DFunctor):- + symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), + atomic_list_concat(LL,'_',DFunctor). + +sort_on(C,R,A,B):- (A==B-> R= (=) ; must_det_ll((call(C,A,AA),call(C,B,BB),!,compare(R,AA+A,BB+B)))),!. +tokens(X,VL):- unaccent_atom(X,A),!, findall(E,(is_tokenizer(T),call(T,A,E)),L),predsort(sort_on(length_fw_len),L,S),last(S,VL). + +length_fw_len([W|List],L+WL):- length(List,L),atom_length(W,WL). + +print_token_args:- make, + fb_arg(X),tokens(X,A0), + exclude(is_dash,A0,A),tterm(A,AT),writeq(X),write(' '),writeq(AT),write(' '),write_src(A),nl,fail. +is_dash('_'). +is_dash('-'). +tterm([A],A):-!. +tterm([A,':',B|M],BA):- atom(A),!,BA=..[A,B|M]. +tterm([A,B|M],BA):- atom(B),!,BA=..[B,A|M]. +tterm([A|B],BA):- atom(A),!,BA=..[B|A]. +tterm(A,A). + +is_tokenizer(into_list). +is_tokenizer(to_case_break_atoms). +is_tokenizer(atom_to_stem_list). +is_tokenizer(tokenize_atom). +%is_tokenizer(double_metaphone). + + + +is_an_arg_type(S,T):- flybase_identifier(S,T),!. +has_type(S,Type):- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,Aft>0. + +% Print arguments of a compound term. +write_args_as_sexpression([]). +write_args_as_sexpression([H|T]) :- write(' '), pp_sex(H), write_args_as_sexpression(T). + +% Print the rest of the list. +print_list_as_sexpression([]). +%print_list_as_sexpression([H]):- w_proper_indent(pp_sex(H)),!. +print_list_as_sexpression([H|T]):- write(' '), pp_sex(H), print_list_as_sexpression(T). + +call_sexpr(S):- writeln(call=S). +%call_sexpr(Space,Expr,Result):- + +:- dynamic(fb_pred/2). + +%full_atom_count(SL):- flag(total_loaded_atoms,SL,SL),SL>1,!. +full_atom_count(SL):- findall(NC,(fb_pred_nr(F,A),metta_stats(F,A,NC)),Each), sumlist(Each,SL). + +fb_pred_nr(F,A):- dcall0000000000(no_repeats((F=A), fb_pred(F,A))). + +heartbeat :- + % Get the current time and the last printed time + get_time(CurrentTime), + % Check if the global variable is set + ( nb_current(last_printed_time, _) + -> true + ; nb_setval(last_printed_time, CurrentTime) + ), + + nb_getval(last_printed_time, LastPrintedTime), + + % Calculate the difference + Diff is CurrentTime - LastPrintedTime, + + % If the difference is greater than or equal to 60 seconds (1 minute) + ( Diff >= 60 + -> % Print the heartbeat message and update the last printed time + metta_stats + ; % Otherwise, do nothing + true + ). + +metta_stats:- gc_now, + writeln('\n\n\n\n\n\n;~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), + writeln(';~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), + full_atom_count(SL), + format("~N~n; Total\t\tAtoms (Atomspace size): ~`.t ~D~108|~n",[SL]), + get_time(CurrentTime), nb_setval(last_printed_time, CurrentTime), + post_statistic(memory,Mem), + post_statistic(atom_space,AS), + post_statistic(cputime,TotalSeconds), + post_statistic(atoms,Concepts), + flag(assert_new,CTs,CTs), + post_statistic(stack,StackMem), + + + PM is Mem + StackMem, + RM is Mem-AS, + PA is RM//(SL+1), + APS is 60*floor(SL/(TotalSeconds+1)), + ACS is AS//(Concepts+1), + + pl_stats('SymbolAtoms',Concepts), + pl_stats('Random samples',CTs), + skip((pl_stats('Bytes Per Atom (Average)',PA), pl_stats('Bytes Per ConceptNode (Average)',ACS))), + skip((pl_stats('Relational Memory',RM), pl_stats('ConceptNode Memory',AS))), + %pl_stats('Queryspace Memory',StackMem), + %CPU is CPUTime-57600, + format_time(TotalSeconds, Formatted), + skip((pl_stats('Atoms per minute',APS))), + pl_stats('Total Memory Used',PM), + pl_stats('Runtime (days:hh:mm:ss)',Formatted), + nl,nl,!. + +metta_stats(F):- for_all(fb_pred_nr(F,A),metta_stats(F,A)). + +metta_stats(F,A):- forall(metta_stats(F,A,NC), pl_stats(F/A,NC)). +metta_stats(F,A,NC):- functor(P,F,A),(predicate_property(P,number_of_clauses(NC))->true;NC=0). +pl_stats(Stat):- statistics(Stat,Value),pl_stats(Stat,Value). +pl_stats(Stat,[Value|_]):- nonvar(Value),!, pl_stats(Stat,Value). +pl_stats(Stat,Value):- format("~N;\t\t~@: ~`.t ~@~100|",[format_value(Stat),format_value(Value)]),!. + + +% AsPred to print the formatted result. +format_value(Value) :- float(Value),!,format("~2f",[Value]),!. +format_value(Bytes) :- integer(Bytes),format_bytes(Bytes, Formatted), write(Formatted). +format_value(Term) :- format("~w",[Term]). +% Base case: If the number is 1G or more, show it in gigabytes (G). +format_bytes(Bytes, Formatted) :- Bytes >= 1073741824, GB is Bytes / 1073741824, format(string(Formatted), '~2fG', [GB]). +% If the number is less than 1G, show it in megabytes (M). +format_bytes(Bytes, Formatted) :- Bytes >= 104857600, Bytes < 1073741824, !, MB is Bytes / 1048576, D is floor(MB), format(string(Formatted), '~DM', [D]). +% If the number is less than 1K, show it in bytes (B). +format_bytes(Bytes, Formatted) :- format(string(Formatted), '~D', [Bytes]). +% % If the number is less than 1M, show it in kilobytes (K). +%format_bytes(Bytes, Formatted) :- Bytes >= 1024, Bytes < 1048576, !, KB is Bytes / 1024, format(string(Formatted), '~0fK', [KB]). + +% Convert total seconds to days, hours, minutes, seconds, and milliseconds. +format_time(TotalSeconds, Formatted) :- + Seconds is floor(TotalSeconds), + % Get days, remaining seconds + Days is div(Seconds, 86400), + Remain1 is mod(Seconds, 86400)-57600, + format_time(string(Out),'%T',Remain1), + % Format the result + format(string(Formatted), '~w:~w', [Days, Out]). + +% AsPred to print the formatted time. +print_formatted_time(TotalSeconds) :- + format_time(TotalSeconds, Formatted), + writeln(Formatted). + + +metta_final:- + save_pre_statistic(memory), + save_pre_statistic(atoms), + save_pre_statistic(atom_space). +/* +symbol(X):- atom(X). +symbol_number(S,N):- atom_number(S,N). +symbol_string(S,N):- atom_string(S,N). +symbol_chars(S,N):- atom_chars(S,N). +symbol_length(S,N):- atom_length(S,N). +symbol_concat(A,B,C):- atom_concat(A,B,C). +symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). +symbol_contains(T,TT):- atom_contains(T,TT). +*/ + diff --git a/metta_vspace/pyswip-want/metta_subst.bk b/metta_vspace/pyswip-want/metta_subst.bk new file mode 100755 index 00000000..55f0ca41 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_subst.bk @@ -0,0 +1,833 @@ +%self_eval_l1t(X):- var(X),!. +%self_eval_l1t(X):- string(X),!. +%self_eval_l1t(X):- number(X),!. +%self_eval_l1t([]). +self_eval_l1t(X):- \+ callable(X),!. +self_eval_l1t(X):- is_valid_nb_state(X),!. +self_eval_l1t(X):- is_list(X),!,fail. +%self_eval_l1t(X):- compound(X),!. +%self_eval_l1t(X):- is_ref(X),!,fail. +self_eval_l1t(X):- atom(X),!, \+ nb_current(X,_),!. +self_eval_l1t('True'). self_eval_l1t('False'). self_eval_l1t('F'). + + +:- nb_setval(self_space, '&self'). +eval_l1ts_to(XX,Y):- Y==XX,!. +eval_l1ts_to(XX,Y):- Y=='True',!, is_True(XX),!. + +%current_self(Space):- nb_current(self_space,Space). +eval_l1t_args(A,AA):- + current_self(Space), + eval_l1t_args(11,Space,A,AA). + +%eval_l1t_args(Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval_l1t_args(X)),fail. + +eval_l1t_args(_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. + +eval_l1t_args(Depth,Self,X,Y):- nonvar(Y),!,eval_l1t_args(Depth,Self,X,XX),eval_l1ts_to(XX,Y). +eval_l1t_args(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args(_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. + +eval_l1t_args(Depth,Self,[F|X],Y):- + (F=='superpose' ; ( option_value(no_repeats,false))), + mnotrace((D1 is Depth-1)),!, + eval_l1t_args0(D1,Self,[F|X],Y). + +eval_l1t_args(Depth,Self,X,Y):- + mnotrace((no_repeats_var(YY), + D1 is Depth-1)), + eval_l1t_args0(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY))). + + + + + +:- nodebug(metta(eval_l1t)). + +/* +debugging_metta(G):-is_debugging((eval_l1t))->ignore(G);true. +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_l1t_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval_l1t,wdmsg(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + +*/ + +eval_l1t_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_l1t_num,_,0),debug(metta(eval_l1t))). +eval_l1t_args0(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args0(Depth,Self,X,Y):- + Depth2 is Depth-1, + eval_l1t_args11(Depth,Self,X,M), + (M\=@=X ->eval_l1t_args0(Depth2,Self,M,Y);Y=X). + + + +eval_l1t_args11(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. +eval_l1t_args11(Depth,Self,X,Y):- \+ debugging(metta(eval_l1t)),!, eval_l1t_args1(Depth,Self,X,Y). +eval_l1t_args11(Depth,Self,X,Y):- flag(eval_l1t_num,EX,EX+1), + option_else(traclen,Max,100), + (EX>Max->(nodebug(metta(eval_l1t)),write('Switched off tracing. For a longer trace !(pragma! tracelen 101))'));true), + mnotrace((no_repeats_var(YY), D1 is Depth-1)), + DR is 99-D1, + if_trace(metta(eval_l1t),indentq(Depth,'-->'(EX,Self,X,depth(DR)))), + Ret=retval(fail), + call_cleanup(( + eval_l1t_args1(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + mnotrace(ignore(((Y\=@=X,if_trace(metta(eval_l1t),indentq(Depth,'<--'(EX,Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(eval_l1t_args0(D1,Self,X,Y)),fail)). + + +:- discontiguous eval_l1t_args1/4. +:- discontiguous eval_l1t_args2/4. + +eval_l1t_args1(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. + +eval_l1t_args1(Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + eval_l1t_args(Depth,Self,VI,VM), + ( VM\==VI -> eval_l1t_args(Depth,Self,[V|VM],VVO) ; + (eval_l1t_args(Depth,Self,V,VV), (V\==VV -> eval_l1t_args(Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +eval_l1t_args1(_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. + +eval_l1t_args1(Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval_l1t_args(Depth,Self),VI,VO). + +eval_l1t_args1(_Dpth,_Slf,['repl!'],'True'):- !, repl. +eval_l1t_args1(Depth,Self,['!',Cond],Res):- !, call(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['rtrace',Cond],Res):- !, rtrace(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['time',Cond],Res):- !, time(eval_l1t_args(Depth,Self,Cond,Res)). +eval_l1t_args1(Depth,Self,['print',Cond],Res):- !, eval_l1t_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +eval_l1t_args1(Depth,Self,['println!',Cond],Res):- !, eval_l1t_args(Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). + +eval_l1t_args1(_Dpth,_Slf,List,Y):- is_list(List),maplist(self_eval_l1t,List),List=[H|_], \+ atom(H), !,Y=List. + +eval_l1t_args1(Depth,Self,['assertTrue', X],TF):- !, eval_l1t_args(Depth,Self,['assertEqual',X,'True'],TF). +eval_l1t_args1(Depth,Self,['assertFalse',X],TF):- !, eval_l1t_args(Depth,Self,['assertEqual',X,'False'],TF). + +eval_l1t_args1(Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_eval_l1t(Depth,Self,X,XX), + bagof_eval_l1t(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +eval_l1t_args1(Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (setof_eval_l1t(Depth,Self,X,XX), setof_eval_l1t(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). + +eval_l1t_args1(Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_eval_l1t(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +l1t_loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + l1t_loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), + with_debug((eval_l1t),time_eval('Trace',OrigGoal)))). + +l1t_loonit_asserts(Src,Goal,Check):- + loonit_asserts(Src,Goal,Check). + + +/* +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L):-!. +unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- \+ compound(C),!,L=C. +unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). + +unify_lists(C,L):- \+ compound(C),!,L=C. +unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough(XX,YY),!. + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + +*/ + +eval_l1t_args1(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Depth,Space,Goal). +eval_l1t_args1(Depth,Self,['match',Other,Goal,Template,Else],Template):- + (eval_l1t_args1(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). + +% Macro: case +eval_l1t_args1(Depth,Self,X,Res):- + X= [CaseSym,A,CL],CaseSym == 'case', !, + into_case_l1t_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case_l1t(Key,Case0,Value), + if_trace((case),(format('~N'), + writeqln(c(Nth,Key)=Value))))),KVs),!, + ((eval_l1t_args(Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), + (select_case_l1t(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + eval_l1t_args(Depth,Self,Value,Res). + + select_case_l1t(Depth,Self,AA,Cases,Value):- + (best_key_l1t(AA,Cases,Value) -> true ; + (maybe_special_key_l1ts(Depth,Self,Cases,CasES), + (best_key_l1t(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key_l1t(AA,Cases,Value):- + ((member(Match-Value,Cases),unify_enough(AA,Match))->true; + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match)))). + + %into_case_l1t_list([[C|ASES0]],CASES):- is_list(C),!, into_case_l1t_list([C|ASES0],CASES),!. + into_case_l1t_list(CASES,CASES):- is_list(CASES),!. + is_case_l1t(AA,[AA,Value],Value):-!. + is_case_l1t(AA,[AA|Value],Value). + + maybe_special_key_l1ts(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + eval_l1t_args(Depth,Self,K,AK), K\=@=AK,!, + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(Depth,Self,[_|KVI],KVO):- + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(_Depth,_Self,[],[]). + + +%[collapse,[1,2,3]] +eval_l1t_args1(Depth,Self,['collapse',List],Res):-!, bagof_eval_l1t(Depth,Self,List,Res). +%[superpose,[1,2,3]] +eval_l1t_args1(Depth,Self,['superpose',List],Res):- !, member(E,List),eval_l1t_args(Depth,Self,E,Res). +get_l1t_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_l1t_sa_p2(P3,E,Cmpd,SA). +get_l1t_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_l1t_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_l1t_sa_p1(P3,E,Arg,SA). +eval_l1t_args1(Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval_l1t_args(Depth,Self, Term, Res). + +/* + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +*/ + + + +eval_l1t_args1(Depth,Self, Term, Res):- + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, setof_eval_l1t(Depth,Self,List,Var), + eval_l1t_args(Depth,Self, Term, Res). + + +%max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + +eval_l1t_args1(Depth,Self,['if',Cond,Then],Res):- !, + eval_l1t_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_l1t_args(Depth,Self,Then,Res) ; Res = []). + +eval_l1t_args1(Depth,Self,['if',Cond,Then,Else],Res):- !, + eval_l1t_args(Depth,Self,Cond,TF), + (is_True(TF) -> eval_l1t_args(Depth,Self,Then,Res);eval_l1t_args(Depth,Self,Else,Res)). + +eval_l1t_args1(_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + +eval_l1t_args1(Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((eval_l1t_args(Depth,Self,A5,AE), AE=A)), + eval_l1t_args(Depth,Self,AA,OO). +%eval_l1t_args1(Depth,Self,['let',A,A5,AA],AAO):- !,eval_l1t_args(Depth,Self,A5,A),eval_l1t_args(Depth,Self,AA,AAO). +eval_l1t_args1(Depth,Self,['let*',[],Body],RetVal):- !, eval_l1t_args(Depth,Self,Body,RetVal). +eval_l1t_args1(Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + eval_l1t_args1(Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + +eval_l1t_args1(Depth,Self,['colapse'|List], Flat):- !, maplist(eval_l1t_args(Depth,Self),List,Res),flatten(Res,Flat). +eval_l1t_args1(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter_l1t(Depth,Space,PredDecl). +eval_l1t_args1(_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +eval_l1t_args1(_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +eval_l1t_args1(Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + eval_l1t_args(Depth,Self,A,AA), eval_l1t_args(Depth,Self,B,BB). + +eval_l1t_args1(Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + eval_l1t_args(Depth,Self,A,AA), eval_l1t_args(Depth,Self,B,BB). + + +eval_l1t_args1(Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval_l1t_args(Depth,Self,StateExpr,StateMonad), + eval_l1t_args(Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +eval_l1t_args1(Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + eval_l1t_args(Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +eval_l1t_args1(Depth,Self,['get-state',StateExpr],Value):- !, + eval_l1t_args(Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% eval_l1t_args1(Depth,Self,['get-state',Expr],Value):- !, eval_l1t_args(Depth,Self,Expr,State), arg(1,State,Value). + + + +% check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +/* +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). + +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +space_type_method(is_nb_state,new_space,init_state). +space_type_method(is_nb_state,clear_space,clear_nb_values). +space_type_method(is_nb_state,add_atom,add_nb_value). +space_type_method(is_nb_state,remove_atom,'change-state!'). +space_type_method(is_nb_state,replace_atom,replace_nb_value). +space_type_method(is_nb_state,atom_count,value_nb_count). +space_type_method(is_nb_state,get_atoms,'get-state'). +space_type_method(is_nb_state,atom_iter,value_nb_iter). + +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +*/ + +eval_l1t_args1(Depth,Self,['get-type',Val],Type):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!. + +% mnotrace(G):- once(G). +/* +is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval_l1t(EvalMe):- is_list(EvalMe),!. + +get_type(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type(Depth,Self,Val,Type). + + +get_type(Depth,Self,EvalMe,Type):- needs_eval_l1t(EvalMe),eval_l1t_args(Depth,Self,EvalMe,Val), \+ needs_eval_l1t(Val),!, + get_type(Depth,Self,Val,Type). + +get_type(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type(Depth,_Slf,Type,Type):- Depth<1,!. +get_type(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). +get_type(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type(Depth,Self,Expr,Type):-Depth2 is Depth-1, eval_l1t_args(Depth2,Self,Expr,Val),Expr\=@=Val,get_type(Depth2,Self,Val,Type). + + +get_type(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type(_Dpth,_Slf,_,'%Undefined%'):- fail. +*/ + +eval_l1t_args1(Depth,Self,['length',L],Res):- !, eval_l1t_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_l1t_args1(Depth,Self,['CountElement',L],Res):- !, eval_l1t_args(Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + +/* + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +*/ + +/* +eval_l1t_args1(Depth,Self,[F,A|Args],Res):- + \+ self_eval_l1t(A), + eval_l1t_args(Depth,Self,A,AA),AA\==A, + eval_l1t_args(Depth,Self,[F,AA|Args],Res). + + +eval_l1t_args1(Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_eval_l1t(A), + eval_l1t_args(Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), eval_l1t_args(Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +eval_l1t_args1(Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter_l1t(Depth,Self,['=',F,R]), eval_l1t_args(Depth,Self,[R|Args],Res). + +eval_l1t_args1(Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,eval_l1t_args(Depth,Self,FArgs,Res). +*/ +eval_l1t_args1(_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. +eval_l1t_args1(Depth,Self,['bind!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,eval_l1t_args(Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). +eval_l1t_args1(Depth,Self,['pragma!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,eval_l1t_args(Depth,Self,Expr,Value),set_option_value(Name,Value), return_empty(Value,RetVal). +eval_l1t_args1(_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). + + + +eval_l1t_args1(Depth,Self,['nop',Expr],Empty):- !, eval_l1t_args(Depth,Self,Expr,_), return_empty([],Empty). + +/* +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). +*/ +eval_l1t_args1(_Dpth,_Slf,[And],'True'):- is_and(And),!. +eval_l1t_args1(Depth,Self,['and',X,Y],TF):- !, as_tf((eval_l1t_args(Depth,Self,X,'True'),eval_l1t_args(Depth,Self,Y,'True')),TF). +eval_l1t_args1(Depth,Self,[And,X|Y],TF):- is_and(And),!,eval_l1t_args(Depth,Self,X,TF1), + is_True(TF1),eval_l1t_args1(Depth,Self,[And|Y],TF). +%eval_l1t_args2(Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +eval_l1t_args1(Depth,Self,['or',X,Y],TF):- !, as_tf((eval_l1t_args(Depth,Self,X,'True');eval_l1t_args(Depth,Self,Y,'True')),TF). + + + +eval_l1t_args1(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_l1t_args1(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_l1t_args1(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Expander,Other,_,_),L1),length(L1,C1),findall(_,metta_atom(Space,_),L2),length(L2,C2),Count is C1+C2. +eval_l1t_args1(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). + + +eval_l1t_args1(Depth,Self,['+',N1,N2],N):- number(N1),!, + eval_l1t_args(Depth,Self,N2,N2Res), catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +eval_l1t_args1(Depth,Self,['-',N1,N2],N):- number(N1),!, + eval_l1t_args(Depth,Self,N2,N2Res), catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +eval_l1t_args1(Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(V),is_list(VI),!,maplist(eval_l1t_args(Depth,Self),VI,VO). + +eval_l1t_args1(Depth,Self,X,Y):- + (eval_l1t_args2(Depth,Self,X,Y)*->true; + (eval_l1t_args2_failed(Depth,Self,X,Y)*->true;X=Y)). + + +eval_l1t_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +eval_l1t_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +eval_l1t_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(eval_l1t_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%eval_l1t_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval_l1t_args(Depth,Self,V,O)),V\=@=O,!. +eval_l1t_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, + eval_l1t_args(Depth,Self,H,HH), + eval_l1t_args2_failed(Depth,Self,T,TT). + +eval_l1t_args2_failed(Depth,Self,T,TT):- eval_l1t_args(Depth,Self,T,TT). + + %eval_l1t_args(Depth,Self,X,Y):- eval_l1t_args1(Depth,Self,X,Y)*->true;Y=[]. + +%eval_l1t_args1(Depth,_,_,_):- Depth<1,!,fail. +%eval_l1t_args1(Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_l1t_args1(_Dpth,_Slf,X,Y):- self_eval_l1t(X),!,Y=X. + +% Kills zero arity functions eval_l1t_args1(Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval_l1t_args(Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_l1t_args2(_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_l1t_args1(Depth,_,_,_):- Depth<1,!,fail. +eval_l1t_args2(Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_l1t_args2(Depth,Self,[F|PredDecl],Res):- + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval_l1t_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval_l1t_args(Depth,Self,[F|Temp],Res). + + + +% user defined function +eval_l1t_args2(Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Self,H)),!, + eval_l1t_args30(Depth,Self,[H|PredDecl],Res). + +% function inherited by system +eval_l1t_args2(Depth,Self,PredDecl,Res):- eval_l1t_args40(Depth,Self,PredDecl,Res). + +/* +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +%catch_warn(G):- notrace(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +%catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). + +%as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +*/ +eval_l1t_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +eval_l1t_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +eval_l1t_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). +eval_l1t_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +eval_l1t_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +eval_l1t_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous eval_l1t_args3/4. +%eval_l1t_args2(Depth,Self,PredDecl,Res):- eval_l1t_args3(Depth,Self,PredDecl,Res). + +%eval_l1t_args2(_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_eval_l1t,L1),!,Res=L1. +%eval_l1t_args2(_Depth,_Self,X,X). + +/* +is_user_defined_head(Other,H):- mnotrace(is_user_defined_head0(Other,H)). +is_user_defined_head0(Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Other,H). +is_user_defined_head0(Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Other,F). +is_user_defined_head0(Other,H):- is_user_defined_head_f(Other,H). + +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,H). +is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,[H|_]). + +%is_user_defined_head_f1(Other,H):- metta_type(Other,H,_). +is_user_defined_head_f1(Other,H):- metta_atom(Other,[H|_]). +is_user_defined_head_f1(Other,H):- metta_defn(Expander,Other,[H|_],_). +%is_user_defined_head_f(_,H):- is_metta_builtin(H). + + +is_special_op(F):- \+ atom(F), \+ var(F), !, fail. +is_special_op('case'). +is_special_op(':'). +is_special_op('='). +is_special_op('->'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). +*/ + + +eval_l1t_args30(Depth,Self,H,B):- (eval_l1t_args34(Depth,Self,H,B)*->true;eval_l1t_args37(Depth,Self,H,B)). + +eval_l1t_args34(_Dpth,Self,H,B):- (metta_defn(Expander,Self,H,B);(metta_atom(Self,H),B='True')). + +% Has argument that is headed by the same function +eval_l1t_args37(Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + eval_l1t_args(Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + eval_l1t_args30(Depth,Self,[H1|NewArgs],Res). + +eval_l1t_args37(Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + metta_defn(Expander,Self,[H|Start],Left), + eval_l1t_args(Depth,Self,[Left|T1],Y). + +% Has subterm to eval_l1t +eval_l1t_args37(Depth,Self,[F|PredDecl],Res):- + Depth>1, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + eval_l1t_args(Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + eval_l1t_args30(Depth,Self,[F|Temp],Res). + +%eval_l1t_args37(Depth,Self,X,Y):- (eval_l1t_args38(Depth,Self,X,Y)*->true;metta_atom_iter_l1t(Depth,Self,[=,X,Y])). + +eval_l1t_args37(Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (eval_l1t_args(Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +eval_l1t_args38(_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. +eval_l1t_args38(_Dpth,Self,[H|T1],Y):- metta_defn(Expander,Self,[H|T1],Y). +eval_l1t_args38(_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). +eval_l1t_args38(_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Expander,Self,Left,Y). + + +%eval_l1t_args3(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Expander,Self,['ift',R,Then],Become),eval_l1t_args(Depth,Self,CR,R),eval_l1t_args(Depth,Self,Then,_True),eval_l1t_args(Depth,Self,Become,RO). + +metta_atom_iter_l1t(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Expander,Other,H,B)*->true;(metta_atom(Other,H),B='True')). + +metta_atom_iter_l1t(Depth,_,_):- Depth<3,!,fail. +metta_atom_iter_l1t(_Dpth,_Slf,[]):-!. +metta_atom_iter_l1t(_Dpth,Other,H):- metta_atom(Other,H). +metta_atom_iter_l1t(Depth,Other,H):- D2 is Depth -1, metta_defn(Expander,Other,H,B),metta_atom_iter_l1t(D2,Other,B). +metta_atom_iter_l1t(_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter_l1t(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter_l1t(D2,Self,X),metta_atom_iter_l1t(D2,Self,[And|Y]). +/* +metta_atom_iter_l1t2(_,Self,[=,X,Y]):- metta_defn(Expander,Self,X,Y). +metta_atom_iter_l1t2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Expander,Other,H,B). +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_defn(Expander,Self,X,Y). %, Y\=='True'. +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_atom(Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_l1t_ref(Other,['=',H,B],Ref):-clause(metta_defn(Expander,Other,H,B),true,Ref). +metta_atom_iter_l1t_ref(Other,H,Ref):-clause(metta_atom(Other,H),true,Ref). + +%not_compound(Term):- \+ is_list(Term),!. +%eval_l1t_args2(Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_l1t_args345(Depth,Self,Term,Res). + + +% function inherited by system +eval_l1t_args40(Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(eval_l1t_args(Depth,Self),X,Y),!,eval_l1t_args5(Depth,Self,[F|Y],FY). +eval_l1t_args40(Depth,Self,FX,FY):- eval_l1t_args5(Depth,Self,FX,FY). + +eval_l1t_args5(_Dpth,_Slf,[F|LESS],Res):- once(eval_l1t_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. +eval_l1t_args5(Depth,Self,[AE|More],TF):- length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_l1t_args6(Depth,Self,[AE|More],TF). +eval_l1t_args6(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). + +%eval_l1t_args40(Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval_l1t_args(Depth,Self,[F2|X2],Y2),eval_l1t_args(Depth,Self,X1,Y1). + + +%cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +bagof_eval_l1t(Depth,Self,X,L):- !,findall(E,eval_l1t_args(Depth,Self,X,E),L). +setof_eval_l1t(Depth,Self,X,S):- !,findall(E,eval_l1t_args(Depth,Self,X,E),L),sort(L,S). +%setof_eval_l1t(Depth,Self,X,S):- setof(E,eval_l1t_args(Depth,Self,X,E),S)*->true;S=[]. + + diff --git a/metta_vspace/pyswip-want/metta_subst.pl b/metta_vspace/pyswip-want/metta_subst.pl new file mode 100755 index 00000000..23d76490 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_subst.pl @@ -0,0 +1,937 @@ +%self_subst(X):- var(X),!. +%self_subst(X):- string(X),!. +%self_subst(X):- number(X),!. +%self_subst([]). +self_subst(X):- \+ callable(X),!. +self_subst(X):- self_eval(X),!. +self_subst(X):- is_valid_nb_state(X),!. +self_subst(X):- is_list(X),!,fail. +%self_subst(X):- compound(X),!. +%self_subst(X):- is_ref(X),!,fail. +self_subst(X):- atom(X),!, \+ nb_current(X,_),!. +self_subst('True'). self_subst('False'). self_subst('F'). + +:- style_check(-singleton). + +:- nb_setval(self_space, '&self'). +substs_to(XX,Y):- Y==XX,!. +substs_to(XX,Y):- Y=='True',!, is_True(XX),!. + +%current_self(Space):- nb_current(self_space,Space). +subst_args(Eq,RetType,A,AA):- + current_self(Space), + subst_args(Eq,RetType,11,Space,A,AA). + +%subst_args(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(subst_args(Eq,RetType,X)),fail. + +subst_args(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, + call(Eq,'=',RetType,Depth,Self,X,Y). + + + +%subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. +%subst_args(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!,subst_args(Eq,RetType,Depth,Self,X,XX),substs_to(XX,Y). +subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. + +subst_args(Eq,RetType,Depth,Self,[F|X],Y):- + % (F=='superpose' ; ( option_value(no_repeats,false))), + mnotrace((D1 is Depth-1)),!, + subst_args0(D1,Self,[F|X],Y). + +subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args0(Depth,Self,X,Y). +/* +subst_args(Eq,RetType,Depth,Self,X,Y):- + mnotrace((no_repeats_var(YY), + D1 is Depth-1)), + subst_args0(D1,Self,X,Y), + mnotrace(( \+ (Y\=YY))). +*/ + + + +:- nodebug(metta(eval)). + +/* +debugging_metta(G):-is_debugging((eval))->ignore(G);true. +w_indent(Depth,Goal):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). +indentq(Depth,Term):- + \+ \+ mnotrace(ignore((( + format('~N'), + setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), + format('~N')))))). + + +with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). +with_debug(Flag,Goal):- flag(eval_num,_,0), + setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). + +flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). +flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). +flag_to_var(Flag,Var):- Flag=Var. + +set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,fbug(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,fbug(E-->if_trace(Flag,Goal))))). + + +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,fbug(SS=G)) ; fail. +maybe_efbug(_,G):- call(G). +%efbug(P1,G):- call(P1,G). +efbug(_,G):- call(G). + + + +is_debugging(Flag):- var(Flag),!,fail. +is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). +is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). +is_debugging(not(Flag)):- !, \+ is_debugging(Flag). +is_debugging(Flag):- Flag== false,!,fail. +is_debugging(Flag):- Flag== true,!. +is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. +is_debugging(Flag):- debugging(Flag,TF),!,TF==true. +is_debugging(Flag):- flag_to_var(Flag,Var), + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). + +:- nodebug(metta(overflow)). + +*/ + +subst_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +subst_args0(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args0(Depth,Self,X,Y):- + Depth2 is Depth-1, + subst_args11(Depth,Self,X,M), + (M\=@=X ->subst_args0(Depth2,Self,M,Y);Y=X). + + + +subst_args11(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args11(Depth,Self,X,Y):- \+ debugging(metta(eval)),!, subst_args1(Eq,RetType,Depth,Self,X,Y). +subst_args11(Depth,Self,X,Y):- + +notrace(( + + flag(eval_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,subst_args(Self,X,'$VAR'('RET')),depth(DR)))))), + Ret=retval(fail))), + + call_cleanup(( + subst_args1(Eq,RetType,D1,Self,X,Y), + mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + mnotrace(ignore(((Y\=@=X,if_trace(metta(eval),indentq(Depth,'<--'(EX,Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(subst_args0(D1,Self,X,Y)),fail)). + + +:- discontiguous subst_args1/6. +:- discontiguous subst_args2/6. + +subst_args1(Eq,RetType,Depth,Self,X,Y):- + var(Eq) -> (!,subst_args1('=',RetType,Depth,Self,X,Y)); + (atom(Eq), ( Eq \== ('=')) ,!, call(Eq,'=',RetType,Depth,Self,X,Y)). + +subst_args1(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. + +subst_args1(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, + subst_args(Eq,RetType,Depth,Self,VI,VM), + ( VM\==VI -> subst_args(Eq,RetType,Depth,Self,[V|VM],VVO) ; + (subst_args(Eq,RetType,Depth,Self,V,VV), (V\==VV -> subst_args(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). + +subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. + +subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). + +subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, + %(var(A)->true;trace), + ((subst_args(Eq,RetType,Depth,Self,A5,AE), AE=A)), + subst_args(Eq,RetType,Depth,Self,AA,OO). +%subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,subst_args(Eq,RetType,Depth,Self,A5,A),subst_args(Eq,RetType,Depth,Self,AA,AAO). +subst_args1(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, subst_args(Eq,RetType,Depth,Self,Body,RetVal). +subst_args1(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, + subst_args1(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). + + is_sl_op('>'). is_sl_op('<'). % is_sl_op('>'). + is_sl_op('\\=@='). + +subst_args1(Eq,RetType,Depth,Self,[OP,N1,N2],TF):- is_sl_op(OP), !, + ((subst_args(Eq,RetType,Depth,Self,N1,N1Res),subst_args(Eq,RetType,Depth,Self,N2,N2Res), + ((N1,N2)\=@=(N1Res,N2Res)),subst_args1(Eq,RetType,Depth,Self,[OP,N1Res,N2Res],TF)) + *->true; + subst_selfless([OP,N1,N2],TF)). + + + +subst_args1(Eq,RetType,_Dpth,_Slf,['repl!'],'True'):- !, repl. +subst_args1(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['rtrace',Cond],Res):- !, rtrace(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time(subst_args(Eq,RetType,Depth,Self,Cond,Res)). +subst_args1(Eq,RetType,Depth,Self,['print',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). +% !(println! $1) +subst_args1(Eq,RetType,Depth,Self,['println!',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). + +subst_args1(Eq,RetType,_Dpth,_Slf,List,Y):- is_list(List),maplist(self_subst,List),List=[H|_], \+ atom(H), !,Y=List. + +subst_args1(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). +subst_args1(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). + +subst_args1(Eq,RetType,Depth,Self,['assertEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqual',X0,Y0], + (bagof_subst(Depth,Self,X,XX), + bagof_subst(Depth,Self,Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). + +subst_args1(Eq,RetType,Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertNotEqual',X0,Y0], + (setof_subst(Depth,Self,X,XX), setof_subst(Depth,Self,Y,YY)), + \+ equal_enough(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). + +subst_args1(Eq,RetType,Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, + subst_vars(X0,X),subst_vars(Y0,Y), + l1t_loonit_assert_source_tf( + ['assertEqualToResult',X0,Y0], + (bagof_subst(Depth,Self,X,XX), =(Y,YY)), + equal_enough_for_test(XX,YY), TF), + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. + + +l1t_loonit_assert_source_tf(Src,Goal,Check,TF):- + copy_term(Goal,OrigGoal), + l1t_loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), + as_tf(Check,TF),!, + ignore(( + once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), + with_debug((eval),time_eval('Trace',OrigGoal)))). + +l1t_loonit_asserts(Src,Goal,Check):- + loonit_asserts(Src,Goal,Check). + + +/* +sort_result(Res,Res):- \+ compound(Res),!. +sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). +sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). +sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). +sort_result(Res,Res). + +unify_enough(L,L):-!. +unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +unify_enough(C,L):- \+ compound(C),!,L=C. +unify_enough(L,C):- \+ compound(C),!,L=C. +unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). + +unify_lists(C,L):- \+ compound(C),!,L=C. +unify_lists(L,C):- \+ compound(C),!,L=C. +unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). + +equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. +equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. + +equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough(XX,YY),!. + +equal_enouf(R,V):- R=@=V, !. +equal_enouf(_,V):- V=@='...',!. +equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). +%equal_enouf(R,V):- (var(R),var(V)),!, R=V. +equal_enouf(R,V):- (var(R);var(V)),!, R==V. +equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . +equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). +equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. +equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). + +equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. +equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. +equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). + + +has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. +set_last_error(_). + +*/ +subst_args1(Eq,RetType,Depth, Self, [OP|ARGS], Template):- + is_space_op(OP), !, + subst_args_as(Depth, Self, [OP|ARGS], Template). + +% Definition of uses_op to validate operations +is_space_op('match'). +is_space_op('get-atoms'). +is_space_op('add-atom'). +is_space_op('remove-atom'). +is_space_op('atom-count'). +is_space_op('atom-replace'). + +subst_args_as(Depth, Self, [OP|ARGS], Template):- !, eval('=',_,Depth, Self, [OP|ARGS], Template). + +subst_args_as(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Eq,Depth,Space,Goal). +subst_args_as(Depth,Self,['match',Other,Goal,Template,Else],Template):- + (subst_args_as(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). +subst_args_as(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter_l1t(Eq,Depth,Space,PredDecl). +subst_args_as(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +subst_args_as(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +subst_args_as(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L_as),length(L_as,C_as),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C_as+C2. +subst_args_as(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). + +subst_args1(Eq,RetType,Depth,Self,X,Res):- + X= [CaseSym|_],CaseSym == 'case', !, eval('=',_,Depth, Self, X,Res). + +% Macro: case +subst_args1_hide(Depth,Self,X,Res):- + X= [CaseSym,A,CL],CaseSym == 'case', !, + into_case_l1t_list(CL,CASES), + findall(Key-Value, + (nth0(Nth,CASES,Case0), + (is_case_l1t(Key,Case0,Value), + if_trace((case),(format('~N'), + writeqln(c(Nth,Key)=Value))))),KVs),!, + ((subst_args(Eq,RetType,Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), + (select_case_l1t(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) + *->true;(member(Void -Value,KVs),Void=='%void%')), + subst_args(Eq,RetType,Depth,Self,Value,Res). + + select_case_l1t(Depth,Self,AA,Cases,Value):- + (best_key_l1t(AA,Cases,Value) -> true ; + (maybe_special_key_l1ts(Depth,Self,Cases,CasES), + (best_key_l1t(AA,CasES,Value) -> true ; + (member(Void -Value,CasES),Void=='%void%')))). + + best_key_l1t(AA,Cases,Value):- + ((member(Match-Value,Cases),unify_enough(AA,Match))->true; + ((member(Match-Value,Cases),AA ==Match)->true; + ((member(Match-Value,Cases),AA=@=Match)->true; + (member(Match-Value,Cases),AA = Match)))). + + %into_case_l1t_list([[C|ASES0]],CASES):- is_list(C),!, into_case_l1t_list([C|ASES0],CASES),!. + into_case_l1t_list(CASES,CASES):- is_list(CASES),!. + is_case_l1t(AA,[AA,Value],Value):-!. + is_case_l1t(AA,[AA|Value],Value). + + maybe_special_key_l1ts(Depth,Self,[K-V|KVI],[AK-V|KVO]):- + subst_args(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(Depth,Self,[_|KVI],KVO):- + maybe_special_key_l1ts(Depth,Self,KVI,KVO). + maybe_special_key_l1ts(_Depth,_Self,[],[]). + + +%[collapse,[1,2,3]] +subst_args1(Eq,RetType,Depth,Self,['collapse',List],Res):-!, bagof_subst(Depth,Self,List,Res). +%[superpose,[1,2,3]] +subst_args1(Eq,RetType,Depth,Self,['superpose',List],Res):- !, member(E,List),subst_args(Eq,RetType,Depth,Self,E,Res). + +get_l1t_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_l1t_sa_p2(P3,E,Cmpd,SA). +get_l1t_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). +get_l1t_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_l1t_sa_p1(P3,E,Arg,SA). +subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + subst_args(Eq,RetType,Depth,Self, Term, Res). + +/* + +sub_sterm(Sub,Sub). +sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). +sub_sterm1(_ ,List):- \+ compound(List),!,fail. +sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). +sub_sterm1(_ ,[_|_]):-!,fail. +sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +*/ +% ================================================================= +% ================================================================= +% ================================================================= +% NOP/EQUALITU/DO +% ================================================================= +% ================================================================= +% ================================================================ +subst_args1(Eq,RetType,_Depth,_Self,['nop'], _ ):- !, fail. +subst_args1(Eq,RetType,Depth,Self,['nop',Expr], Empty):- !, + ignore(subst_args(Eq,RetType,Depth,Self,Expr,_)), + return_empty([], Empty). + +subst_args1(Eq,RetType,Depth,Self,['do',Expr], Empty):- !, + forall(subst_args(Eq,RetType,Depth,Self,Expr,_),true), + return_empty([],Empty). + +subst_args1(Eq,RetType,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). + +% ================================================================= +% ================================================================= +% ================================================================= +% if/If +% ================================================================= +% ================================================================= +% ================================================================= + + +subst_args1(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(subst_args,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + (call(Body), nb_setarg(1,Do_more_defs,false), + deterministic(TF), (TF==true -> ! ; true)). + + +subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> subst_args(Eq,RetType,Depth,Self,Then,Res) + ; subst_args(Eq,RetType,Depth,Self,Else,Res)). + +subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) + -> subst_args(Eq,RetType,Depth,Self,Then,Res) + ; subst_args(Eq,RetType,Depth,Self,Else,Res)). + +subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + +subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, + subst_args(Eq,'Bool',Depth,Self,Cond,TF), + (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; + (!, fail,Res = [],!)). + + +subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- + 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). + + + +subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, + mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, setof_subst(Depth,Self,List,Var), + subst_args(Eq,RetType,Depth,Self, Term, Res). + + +%max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). + + +subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. + + + +subst_args1(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(subst_args(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). +subst_args1(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. +subst_args1(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. + +subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, + subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). + +subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, + subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). + + +subst_args1(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), + subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). +subst_args1(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, + subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). +subst_args1(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, + subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + + + +% subst_args1(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, subst_args(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). + + + +% check_type:- option_else(typecheck,TF,'False'), TF=='True'. + +:- dynamic is_registered_state/1. +:- flush_output. +:- setenv('RUST_BACKTRACE',full). + +/* +% Function to check if an value is registered as a state name +:- dynamic(is_registered_state/1). + +is_nb_state(G):- is_valid_nb_state(G) -> true ; + is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). + + +:- multifile(state_type_method/3). +:- dynamic(state_type_method/3). +space_type_method(is_nb_state,new_space,init_state). +space_type_method(is_nb_state,clear_space,clear_nb_values). +space_type_method(is_nb_state,add_atom,add_nb_value). +space_type_method(is_nb_state,remove_atom,'change-state!'). +space_type_method(is_nb_state,replace_atom,replace_nb_value). +space_type_method(is_nb_state,atom_count,value_nb_count). +space_type_method(is_nb_state,get_atoms,'get-state'). +space_type_method(is_nb_state,atom_iter,value_nb_iter). + +state_type_method(is_nb_state,new_state,init_state). +state_type_method(is_nb_state,clear_state,clear_nb_values). +state_type_method(is_nb_state,add_value,add_nb_value). +state_type_method(is_nb_state,remove_value,'change-state!'). +state_type_method(is_nb_state,replace_value,replace_nb_value). +state_type_method(is_nb_state,value_count,value_nb_count). +state_type_method(is_nb_state,'get-state','get-state'). +state_type_method(is_nb_state,value_iter,value_nb_iter). +%state_type_method(is_nb_state,query,state_nb_query). + +% Clear all values from a state +clear_nb_values(StateNameOrInstance) :- + fetch_or_create_state(StateNameOrInstance, State), + nb_setarg(1, State, []). + + + +% Function to confirm if a term represents a state +is_valid_nb_state(State):- compound(State),functor(State,'State',_). + +% Find the original name of a given state +state_original_name(State, Name) :- + is_registered_state(Name), + nb_current(Name, State). + +% Register and initialize a new state +init_state(Name) :- + State = 'State'(_,_), + asserta(is_registered_state(Name)), + nb_setval(Name, State). + +% Change a value in a state +'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(2, State, Type), + ( (check_type,\+ get_type_l1t(Depth,Self,UpdatedValue,Type)) + -> (Out = ['Error', UpdatedValue, 'BadType']) + ; (nb_setarg(1, State, UpdatedValue), Out = State) ). + +% Fetch all values from a state +'get-state'(StateNameOrInstance, Values) :- + fetch_or_create_state(StateNameOrInstance, State), + arg(1, State, Values). + +'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type_l1t(Depth,Self,Init,Type);true. + +'new-state'(Init,'State'(Init, Type)):- check_type->get_type_l1t(10,'&self',Init,Type);true. + +fetch_or_create_state(Name):- fetch_or_create_state(Name,_). +% Fetch an existing state or create a new one + +fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. +fetch_or_create_state(NameOrInstance, State) :- + ( atom(NameOrInstance) + -> (is_registered_state(NameOrInstance) + -> nb_current(NameOrInstance, State) + ; init_state(NameOrInstance), + nb_current(NameOrInstance, State)) + ; is_valid_nb_state(NameOrInstance) + -> State = NameOrInstance + ; writeln('Error: Invalid input.') + ), + is_valid_nb_state(State). + +*/ + +subst_args1(Eq,RetType,Depth,Self,['get-type',Val],Type):- !, get_type_l1t(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!. + +% mnotrace(G):- once(G). +/* +is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +*/ + +needs_subst(EvalMe):- is_list(EvalMe),!. + + +get_type_l1t(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type_l1t(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type_l1t(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type_l1t(Depth,Self,Val,Type). + + +get_type_l1t(Depth,Self,EvalMe,Type):- needs_subst(EvalMe),subst_args(Eq,RetType,Depth,Self,EvalMe,Val), \+ needs_subst(Val),!, + get_type_l1t(Depth,Self,Val,Type). + +get_type_l1t(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type_l1t(Depth,_Slf,Type,Type):- Depth<1,!. +get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type_l1t(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type_l1t(Depth2,Self),List,Types). +get_type_l1t(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type_l1t(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type_l1t(Depth2,Self,Type2,Type). +%get_type_l1t(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type_l1t(Depth,Self,Expr,Type):-Depth2 is Depth-1, subst_args(Eq,RetType,Depth2,Self,Expr,Val),Expr\=@=Val,get_type_l1t(Depth2,Self,Val,Type). + + +get_type_l1t(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type_l1t(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type_l1t(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type_l1t(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type_l1t(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type_l1t(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type_l1t(Depth2,Self,Ele,Type)),!. +%get_type_l1t(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type_l1t(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type_l1t(_Dpth,_Slf,_,'%Undefined%'):- fail. + + +subst_args1(Eq,RetType,Depth,Self,['length',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +subst_args1(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). + +/* + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +*/ + +/* +subst_args1(Eq,RetType,Depth,Self,[F,A|Args],Res):- + \+ self_subst(A), + subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A, + subst_args(Eq,RetType,Depth,Self,[F,AA|Args],Res). + + +subst_args1(Eq,RetType,Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), + cwdl(40,(( + append(L,[A|R],AArgs), + \+ self_subst(A), + subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A,!, + append(L,[AA|R],NewArgs), subst_args(Eq,RetType,Depth,Self,[F,A1|NewArgs],Res)))). +*/ + +/* %% + +% !(assertEqualToResult ((inc) 2) (3)) +subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), + metta_atom_iter_l1t(Eq,Depth,Self,['=',F,R]), subst_args(Eq,RetType,Depth,Self,[R|Args],Res). + +subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), Args\==[], + append(F,Args,FArgs),!,subst_args(Eq,RetType,Depth,Self,FArgs,Res). +*/ +subst_args1(Eq,RetType,_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. +subst_args1(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). +subst_args1(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),set_option_value(Name,Value), return_empty(Value,RetVal). +subst_args1(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). + + + +%l_l1t_args1(Depth,Self,['nop',Expr],Empty):- !, subst_args(Eq,RetType,Depth,Self,Expr,_), return_empty([],Empty). + +/* +is_True(T):- T\=='False',T\=='F',T\==[]. + +is_and(S):- \+ atom(S),!,fail. +is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). +*/ +subst_args1(Eq,RetType,_Dpth,_Slf,[And],'True'):- is_and(And),!. +subst_args1(Eq,RetType,Depth,Self,['and',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True'),subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). +subst_args1(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And),!,subst_args(Eq,RetType,Depth,Self,X,TF1), + is_True(TF1),subst_args1(Eq,RetType,Depth,Self,[And|Y],TF). +%subst_args2(Eq,Depth,Self,[H|T],_):- \+ is_list(T),!,fail. +subst_args1(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True');subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). + + + + +subst_args1(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). +subst_args1(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). + +subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(Eq,V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). + +subst_args1(Eq,RetType,Depth,Self,X,Y):- + (subst_args2(Eq,Depth,Self,X,Y)*->true; + (subst_args2_failed(Depth,Self,X,Y)*->true;X=Y)). + + +subst_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. +subst_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +subst_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%subst_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(subst_args(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +subst_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, + subst_args(Eq,RetType,Depth,Self,H,HH), + subst_args2_failed(Depth,Self,T,TT). + +subst_args2_failed(Depth,Self,T,TT):- subst_args(Eq,RetType,Depth,Self,T,TT). + + %subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args1(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. + +%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%subst_args1(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. + +% Kills zero arity functions subst_args1(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,subst_args(Eq,RetType,Depth,Self,X,Y). + + +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +subst_args2(Eq,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +subst_args2(Eq,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +subst_args2(Eq,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + subst_args(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + subst_args(Eq,RetType,Depth,Self,[F|Temp],Res). + + + +% user defined function +subst_args2(Eq,Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Eq,Self,H)),!, + subst_args30(Eq,Depth,Self,[H|PredDecl],Res). + +% function inherited by system +subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args40(Eq,Depth,Self,PredDecl,Res). + +/* +last_element(T,E):- \+ compound(T),!,E=T. +last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. +last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. + + + + +%catch_warn(G):- notrace(catch_err(G,E,(fbug(catch_warn(G)-->E),fail))). +%catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). + +%as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). +*/ +subst_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. +subst_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. +subst_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). +subst_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). +subst_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). +subst_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) +(= (ift True $then) $then) + +; For anything that is green, assert it is Green in &kb22 +!(ift (green $x) + (add-atom &kb22 (Green $x))) + +; Retrieve the inferred Green things: Fritz and Sam. +!(assertEqualToResult + (match &kb22 (Green $x) $x) + (Fritz Sam)) +*/ +:- discontiguous subst_args3/4. +%subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args3(Depth,Self,PredDecl,Res). + +%subst_args2(Eq,_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_subst,L1),!,Res=L1. +%subst_args2(Eq,_Depth,_Self,X,X). + +/* +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +is_user_defined_head_f1(Eq,Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + + +is_special_op(F):- \+ atom(F), \+ var(F), !, fail. +is_special_op('case'). +is_special_op(':'). +is_special_op('='). +is_special_op('->'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('if'). +is_special_op('rtrace'). +is_special_op('or'). +is_special_op('and'). +is_special_op('not'). +is_special_op('match'). +is_special_op('call'). +is_special_op('let'). +is_special_op('let*'). +is_special_op('nop'). +is_special_op('assertEqual'). +is_special_op('assertEqualToResult'). + +is_metta_builtin(Special):- is_special_op(Special). +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('collapse'). +is_metta_builtin('superpose'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). +*/ + + +subst_args30(Eq,Depth,Self,H,B):- (subst_args34(Depth,Self,H,B)*->true;subst_args37(Eq,Depth,Self,H,B)). + +subst_args34(_Dpth,Self,H,B):- (metta_defn(Eq,Self,H,B);(get_metta_atom(Eq,Self,H),B=H)). + +% Has argument that is headed by the same function +subst_args37(Eq,Depth,Self,[H1|Args],Res):- + mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + subst_args(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), + mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + subst_args30(Eq,Depth,Self,[H1|NewArgs],Res). + +subst_args37(Eq,Depth,Self,[[H|Start]|T1],Y):- + mnotrace((is_user_defined_head_f(Eq,Self,H),is_list(Start))), + metta_defn(Eq,Self,[H|Start],Left), + subst_args(Eq,RetType,Depth,Self,[Left|T1],Y). + +% Has subterm to subst +subst_args37(Eq,Depth,Self,[F|PredDecl],Res):- + Depth>1, fail, + quietly(sub_sterm1(SSub,PredDecl)), + mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + subst_args(Eq,RetType,Depth,Self,SSub,Repl), + mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + subst_args30(Eq,Depth,Self,[F|Temp],Res). + +%subst_args37(Eq,Depth,Self,X,Y):- (subst_args38(Eq,Depth,Self,X,Y)*->true;metta_atom_iter_l1t(Eq,Depth,Self,[=,X,Y])). + +subst_args37(Eq,Depth,Self,PredDecl,Res):- fail, + ((term_variables(PredDecl,Vars), + (get_metta_atom(Eq,Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); + (subst_args(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), + PredDecl\=@=Res. + +subst_args38(Eq,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Eq,Self,H) ), !,fail. +subst_args38(Eq,_Dpth,Self,[H|T1],Y):- metta_defn(Eq,Self,[H|T1],Y). +subst_args38(Eq,_Dpth,Self,[H|T1],'True'):- get_metta_atom(Eq,Self,[H|T1]). +subst_args38(Eq,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Eq,Self,Left,Y). + + +%subst_args3(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, +% metta_defn(Eq,Self,['ift',R,Then],Become),subst_args(Eq,RetType,Depth,Self,CR,R),subst_args(Eq,RetType,Depth,Self,Then,_True),subst_args(Eq,RetType,Depth,Self,Become,RO). + +metta_atom_iter_l1t(Eq,_Dpth,Other,[Equal,H,B]):- Eq == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B=H)). + +metta_atom_iter_l1t(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter_l1t(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter_l1t(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter_l1t(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter_l1t(Eq,D2,Other,B). +metta_atom_iter_l1t(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter_l1t(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter_l1t(Eq,D2,Self,X),metta_atom_iter_l1t(Eq,D2,Self,[And|Y]). +/* +metta_atom_iter_l1t2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter_l1t2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter_l1t2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. + +*/ +metta_atom_iter_l1t_ref(Other,['=',H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). +metta_atom_iter_l1t_ref(Other,H,Ref):-clause(get_metta_atom(Eq,Other,H),true,Ref). + +%not_compound(Term):- \+ is_list(Term),!. +%subst_args2(Eq,Depth,Self,Term,Res):- maplist(not_compound,Term),!,subst_args345(Depth,Self,Term,Res). + + +% function inherited by system +subst_args40(Eq,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), + maplist(subst_args(Eq,RetType,Depth,Self),X,Y),!,subst_args5(Depth,Self,[F|Y],FY). +subst_args40(Eq,Depth,Self,FX,FY):- subst_args5(Depth,Self,FX,FY). + +subst_args5(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. +subst_args5(Depth,Self,[AE|More],TF):- fail, is_system_pred(AE), length(More,Len), + (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;subst_args6(Depth,Self,[AE|More],TF). +subst_args6(_Dpth,_Slf,[AE|More],TF):- fail, is_system_pred(AE),length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). + +%subst_args40(Eq,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,subst_args(Eq,RetType,Depth,Self,[F2|X2],Y2),subst_args(Eq,RetType,Depth,Self,X1,Y1). + + +%cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). +bagof_subst(Depth,Self,X,L):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L). +setof_subst(Depth,Self,X,S):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L),sort(L,S). +%setof_subst(Depth,Self,X,S):- setof(E,subst_args(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. + + diff --git a/metta_vspace/pyswip-want/metta_test_nars_1.pl b/metta_vspace/pyswip-want/metta_test_nars_1.pl new file mode 100755 index 00000000..e80375a7 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_test_nars_1.pl @@ -0,0 +1,1752 @@ +% (track_load_into_file "../../examples/VRUN_tests1.metta") +:-metta_eval(['extend-py!',metta_learner]). + +%;; stdlib extension +metta_type('&self','If',[->,'Bool','Atom','Atom']). + +metta_defn_ES(['If','True',Then],Then). + +metta_defn_ES(['If','False',Then],[]). + +metta_type('&self','If',[->,'Bool','Atom','Atom','Atom']). + +metta_defn_ES( + ['If',Cond,Then,Else], + [if,Cond,Then,Else]). + +metta_defn_ES( + ['TupleConcat',Ev1,Ev2], + [ collapse, + [ superpose, + [ [ superpose, Ev1 ], + [ superpose, Ev2 ]]]]). + +metta_defn_ES( + [max,Num1,Num2], + [ 'If', + [>,Num1,Num2], Num1,Num2]). + +metta_defn_ES( + [min,Num1,Num2], + [ 'If', + [<,Num1,Num2], Num1,Num2]). + +metta_defn_ES( + [abs,X], + [ 'If', + [<,X,0], + [-,0,X], + X]). + +metta_type('&self',sequential,[->,'Expression','%Undefined%']). + +metta_defn_ES([sequential,Num1],[superpose,Num1]). + +metta_type('&self',do,[->,'Expression','%Undefined%']). + +metta_defn_ES([do,Num1],[case,Num1,[]]). + +metta_defn_ES(['TupleCount',[]],0). + +metta_defn_ES(['TupleCount',[1]],1). + +metta_defn_ES( + ['BuildTupleCounts',TOld,C,N], + [ let, + T, + [ collapse, + [ superpose, + [ 1, + [superpose,TOld]]]], + [ superpose, + [ [ 'add-atom', + '&self', + [ =, + ['TupleCount',T], + [+,C,2]]], + [ 'If', + [<,C,N], + [ 'BuildTupleCounts', + T, + [+,C,1], + N]]]]]). + +metta_type('&self','CountElement',[->,'Expression','Number']). + +metta_defn_ES( + ['CountElement',X], + [ case, + X, + [ [ Y,1]]]). + +%;;Build for count up to 100 (takes a few sec but it is worth it if space or generally collapse counts are often needed) +:-metta_eval(['BuildTupleCounts',[1],0,100]). + +metta_defn_ES( + [ 'BuildTupleCounts', + [1], 0,100], + [ let, + A, + [ collapse, + [ superpose, + [ 1, + [ superpose, + [1]]]]], + [ superpose, + [ [ 'add-atom', + '&self', + [ =, + ['TupleCount',A], + [+,0,2]]], + [ 'If', + [<,0,100], + [ 'BuildTupleCounts', + A, + [+,0,1], + 100]]]]]). + +metta_type('&self','CollapseCardinality',[->,'Expression','Number']). + +metta_defn_ES( + ['CollapseCardinality',Expression], + [ 'TupleCount', + [ collapse, + ['CountElement',Expression]]]). + +%;; Truth functions +metta_defn_ES( + ['Truth_c2w',C], + [ /, + C, + [-,1,C]]). + +metta_defn_ES( + ['Truth_w2c',W], + [ /, + W, + [+,W,1]]). + +metta_defn_ES( + [ 'Truth_Deduction', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,F1,F2], + [*,C1,C2]]]). + +metta_defn_ES( + [ 'Truth_Abduction', + [F1,C1], + [F2,C2]], + [ F2, + [ 'Truth_w2c', + [ *, + [*,F1,C1], + C2]]]). + +metta_defn_ES( + ['Truth_Induction',T1,T2], + ['Truth_Abduction',T2,T1]). + +metta_defn_ES( + [ 'Truth_Exemplification', + [F1,C1], + [F2,C2]], + [ 1.0, + [ 'Truth_w2c', + [ *, + [*,F1,F2], + [*,C1,C2]]]]). + +metta_defn_ES( + ['Truth_StructuralDeduction',T], + [ 'Truth_Deduction', + T, + [1.0,0.9]]). + +metta_defn_ES( + [ 'Truth_Negation', + [F,C]], + [ [-,1,F], + C]). + +metta_defn_ES( + ['Truth','StructuralDeductionNegated',T], + [ 'Truth_Negation', + ['Truth_StructuralDeduction',T]]). + +metta_defn_ES( + [ 'Truth_Intersection', + [F1,C1], + [F2,C2]], + [ [ * ,F1,F2], + [ * ,C1,C2]]). + +metta_defn_ES( + ['Truth_StructuralIntersection',T], + [ 'Truth_Intersection', + T, + [1.0,0.9]]). + +metta_defn_ES( + ['Truth_or',A,B], + [ -, + 1, + [ *, + [-,1,A], + [-,1,B]]]). + +metta_defn_ES( + [ 'Truth_Comparison', + [F1,C1], + [F2,C2]], + [ let, + F0, + ['Truth_or',F1,F2], + [ [ 'If', + [==,F0,0.0], + 0.0, + [ /, + [*,F1,F2], + F0]], + [ 'Truth_w2c', + [ *, + F0, + [*,C1,C2]]]]]). + +metta_defn_ES( + [ 'Truth_Analogy', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,C1,C2], + F2]]). + +metta_defn_ES( + [ 'Truth_Resemblance', + [F1,C1], + [F2,C2]], + [ [*,F1,F2], + [ *, + [*,C1,C2], + ['Truth_or',F1,F2]]]). + +metta_defn_ES( + [ 'Truth_Union', + [F1,C1], + [F2,C2]], + [ [ 'Truth_or', F1 , F2 ], + [ * , C1 , C2 ]]). + +metta_defn_ES( + [ 'Truth_Difference', + [F1,C1], + [F2,C2]], + [ [ *, + F1, + [-,1,F2]], + [*,C1,C2]]). + +metta_defn_ES( + [ 'Truth_DecomposePNN', + [F1,C1], + [F2,C2]], + [ let, + Fn, + [ *, + F1, + [-,1,F2]], + [ [-,1,Fn], + [ *, + Fn, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_DecomposeNPP', + [F1,C1], + [F2,C2]], + [ let, + F, + [ *, + [-,1,F1], + F2], + [ F, + [ *, + F, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_DecomposePNP', + [F1,C1], + [F2,C2]], + [ let, + F, + [ *, + F1, + [-,1,F2]], + [ F, + [ *, + F, + [*,C1,C2]]]]). + +metta_defn_ES( + ['Truth_DecomposePPP',V1,V2], + [ 'Truth_DecomposeNPP', + ['Truth_Negation',V1], + V2]). + +metta_defn_ES( + [ 'Truth_DecomposeNNN', + [F1,C1], + [F2,C2]], + [ let, + Fn, + [ *, + [-,1,F1], + [-,1,F2]], + [ [-,1,Fn], + [ *, + Fn, + [*,C1,C2]]]]). + +metta_defn_ES( + [ 'Truth_Eternalize', + [F,C]], + [ F, + ['Truth_w2c',C]]). + +metta_defn_ES( + [ 'Truth_Revision', + [F1,C1], + [F2,C2]], + [ 'let*', + [ [ W1, + ['Truth_c2w',C1]], + [ W2, + ['Truth_c2w',C2]], + [ W, + [+,W1,W2]], + [ F, + [ /, + [ +, + [*,W1,F1], + [*,W2,F2]], + W]], + [ C, + ['Truth_w2c',W]]], + [ [min,1.0,F], + [ min, + 0.99, + [ max, + [max,C,C1], + C2]]]]). + +metta_defn_ES( + [ 'Truth_Expectation', + [F,C]], + [ +, + [ *, + C, + [-,F,0.5]], + 0.5]). +% ;;NAL-1 +% ;;!Syllogistic rules for Inheritance: +metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[A,-->,D],['Truth_Deduction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,-->,B],['Truth_Induction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,-->,A],['Truth_Abduction',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[D,-->,A],['Truth_Exemplification',C,E]]). +% ;;NAL-2 +% ;;!Rules for Similarity: +metta_defn_ES(['|-',[[A,<->,B],C]] , [[B,<->,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[A,<->,B],C],[[D,<->,A],E]] , [[D,<->,B],['Truth_Resemblance',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,<->,A],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,<->,B],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,A],E]] , [[D,-->,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,B],E]] , [[A,-->,D],['Truth_Analogy',C,E]]). +% ;;!Dealing with properties and instances: +metta_defn_ES(['|-',[[A,-->,['{',B,'}']],C]] , [[A,<->,['{',B,'}']],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[['$OBJ'(claz_bracket_vector,['$S'])],-->,A],B]] , [[['$OBJ'(claz_bracket_vector,['$S'])],<->,A],['Truth_StructuralIntersection',B]]). +metta_defn_ES(['|-',[[['{',A,'}'],-->,B],C],[[D,<->,A],E]] , [[['{',D,'}'],-->,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,-->,['$OBJ'(claz_bracket_vector,['$M'])]],B],[[_,<->,_],C]] , [[A,-->,['$OBJ'(claz_bracket_vector,['$S'])]],['Truth_Analogy',B,C]]). +metta_defn_ES([=,['|-',[[['{',A,'}'],<->,['{',B,'}']]],[A,<->,B],['Truth_StructuralIntersection',_]]]). +metta_defn_ES([=,['|-',[[['$OBJ'(claz_bracket_vector,[A])],<->,['$OBJ'(claz_bracket_vector,[B])]]],[_,<->,_],['Truth_StructuralIntersection',_]]]). +% ;;NAL-3 +% ;;!Set decomposition: +metta_defn_ES(['|-',[[['{',A,_,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[['{',_,A,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[A])]],['Truth_StructuralDeduction',A]]). +metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[B])]],['Truth_StructuralDeduction',A]]). +% ;;!Extensional and intensional intersection decomposition: +metta_defn_ES(['|-',[[[A,'|',_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[B,&,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[_,'|',A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[_,&,B]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[A,~,_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[A,-->,[B,-,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). +metta_defn_ES(['|-',[[[_,~,A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). +metta_defn_ES(['|-',[[A,-->,[_,-,B]],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). +% ;;!Extensional and intensional intersection composition: (sets via reductions). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,'|',D],-->,B],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,&,D],-->,B],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,~,D],-->,B],['Truth_Difference',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,&,D]],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,'|',D]],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,-,D]],['Truth_Difference',C,E]]). +% ;;!Extensional and intensional intersection decomposition: +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,'|',D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,'|',A],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,&,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,&,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[A,~,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[[D,~,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,&,D]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,&,B]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,'|',D]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,'|',B]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,-,D]],E]] , [[A,-->,D],['Truth_DecomposePNP',C,E]]). +metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,-,B]],E]] , [[A,-->,D],['Truth_DecomposeNNN',C,E]]). +% ;; NAL-4 +% ;;!Transformation rules between product and image: +metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[A,-->,[C,'/1',B]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[B,-->,[C,'/2',A]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\1',C],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\2',B],-->,C],['Truth_StructuralIntersection',D]]). +% ;;other direction of same rules (as these are bi-directional). +metta_defn_ES(['|-',[[A,-->,[B,'/1',C]],D]] , [[[A,*,C],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[A,-->,[B,'/2',C]],D]] , [[[C,*,A],-->,B],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,'\\1',B],-->,C],D]] , [[A,-->,[C,*,B]],['Truth_StructuralIntersection',D]]). +metta_defn_ES(['|-',[[[A,'\\2',B],-->,C],D]] , [[A,-->,[B,*,C]],['Truth_StructuralIntersection',D]]). +% ;;!Comparative relations +metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[>>>,_]],['Truth_FrequencyGreater',B,D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[>>>,C]],D],[[[B,*,E],-->,[>>>,C]],F]] , [[[A,*,E],-->,[>>>,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[===,_]],['Truth_FrequencyEqual',B,D]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D],[[[B,*,E],-->,[===,C]],F]] , [[[A,*,E],-->,[===,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D]] , [[[B,*,A],-->,[===,C]],['Truth_StructuralIntersection',D]]). +% ;;!Optional rules for more efficient reasoning about relation components: +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[E,-->,A],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[E,-->,B],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[E,-->,B],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[E,-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,A],F]] , [[[E,*,B],-->,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[A,-->,E],F]] , [[[E,*,B],-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,A],F]] , [[[E,*,B],-->,C],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,B],F]] , [[[A,*,E],-->,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[B,-->,E],F]] , [[[A,*,E],-->,C],['Truth_Induction',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,B],F]] , [[[A,*,E],-->,C],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[B,-->,E],F]] , [[A,-->,[E,*,C]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,B],F]] , [[A,-->,[E,*,C]],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,B],F]] , [[A,-->,[E,*,C]],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[C,-->,E],F]] , [[A,-->,[B,*,E]],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,C],F]] , [[A,-->,[B,*,E]],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,C],F]] , [[A,-->,[B,*,E]],['Truth_Analogy',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[A,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). +metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[C,<->,E],['Truth_Comparison',D,F]]). +% ;;NAL-5 +% ;;!Negation conjunction and disjunction decomposition: +metta_defn_ES(['|-',[[!,A],B]],[A,['Truth_Negation',B]]). +metta_defn_ES(['|-',[[A,&&,_],B]],[A,['Truth_StructuralDeduction',B]]). +metta_defn_ES(['|-',[[_,&&,A],B]],[A,['Truth_StructuralDeduction',B]]). +metta_defn_ES(['|-',[[A,&&,B],C]] , [[B,&&,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[A,B],[[A,&&,C],D]],[C,['Truth_DecomposePNN',B,D]]). +metta_defn_ES(['|-',[A,B],[[A,'||',C],D]],[C,['Truth_DecomposeNPP',B,D]]). +metta_defn_ES(['|-',[A,B],[[[!,A],&&,C],D]],[C,['Truth_DecomposeNNN',B,D]]). +metta_defn_ES(['|-',[A,B],[[[!,A],'||',C],D]],[C,['Truth_DecomposePPP',B,D]]). +% ;;!Syllogistic rules for Implication: +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[A,==>,D],['Truth_Deduction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,==>,B],['Truth_Induction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,==>,A],['Truth_Abduction',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[D,==>,A],['Truth_Exemplification',C,E]]). +% ;;!Conditional composition for conjunction and disjunction: +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,&&,D],==>,B],['Truth_Union',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,'||',D],==>,B],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,&&,D]],['Truth_Intersection',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,'||',D]],['Truth_Union',C,E]]). +% ;;!Multi-conditional inference: +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[A,==>,C],E]],[B,['Truth_Abduction',D,E]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[E,==>,B],F]] , [[[A,&&,E],==>,C],['Truth_Deduction',D,F]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[[A,&&,E],==>,C],F]] , [[E,==>,B],['Truth_Abduction',D,F]]). +metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[B,==>,E],F]] , [[[A,&&,E],==>,C],['Truth_Induction',D,F]]). +% ;;!Rules for equivalence: +metta_defn_ES(['|-',[[A,<=>,B],C]] , [[B,<=>,A],['Truth_StructuralIntersection',C]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,A],D]] , [[A,<=>,B],['Truth_Intersection',C,D]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,<=>,A],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,<=>,B],['Truth_Comparison',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,A],E]] , [[D,==>,B],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,B],E]] , [[A,==>,D],['Truth_Analogy',C,E]]). +metta_defn_ES(['|-',[[A,<=>,B],C],[[D,<=>,A],E]] , [[D,<=>,B],['Truth_Resemblance',C,E]]). +% ;;!Higher-order decomposition +metta_defn_ES(['|-',[A,B],[[A,==>,C],D]],[C,['Truth_Deduction',B,D]]). +metta_defn_ES(['|-',[A,B],[[[A,&&,C],==>,D],E]] , [[C,==>,D],['Truth_Deduction',B,E]]). +metta_defn_ES(['|-',[A,B],[[C,==>,A],D]],[C,['Truth_Abduction',B,D]]). +metta_defn_ES(['|-',[A,B],[[A,<=>,C],D]],[C,['Truth_Analogy',B,D]]). +% ;;NAL term reductions +% ;;!Extensional intersection, union, conjunction reductions: +metta_defn_ES([A,&,A],A). +metta_defn_ES([A,'|',A],A). +metta_defn_ES([A,&&,A],A). +metta_defn_ES([A,'||',A],A). +% ;;!Extensional set reductions: +metta_defn_ES([['{',A,'}'],'|',['{',B,'}']],['{',A,B,'}']). +metta_defn_ES([['{',A,B,'}'],'|',['{',C,'}']],['{',[A|B],C,'}']). +metta_defn_ES([['{',A,'}'],'|',['{',B,C,'}']],['{',A,[B|C],'}']). +% ;;!Intensional set reductions: +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B])]],['$OBJ'(claz_bracket_vector,[A,B])]). +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A,B])],&,['$OBJ'(claz_bracket_vector,[C])]],['$OBJ'(claz_bracket_vector,[[A|B],C])]). +metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B,C])]],['$OBJ'(claz_bracket_vector,[A,[B|C]])]). +% ;;!Reduction for set element copula: +metta_defn_ES(['{',[A|B],'}'],['{',A,B,'}']). +metta_defn_ES(['$OBJ'(claz_bracket_vector,[[A|B]])],['$OBJ'(claz_bracket_vector,[A,B])]). + +%;params +metta_defn_ES(['BeliefEventsMax'],10). + +metta_defn_ES(['GoalEventsMax'],10). + +%;spaces +:-metta_eval(['bind!','&belief_events',['new-space']]). + +:-metta_eval(['bind!','&goal_events',['new-space']]). + +%;states +:-metta_eval(['bind!','¤tTime',['new-state',1]]). + +:-metta_eval(['bind!','&evidentialBase',['new-state',1]]). + +metta_defn_ES( + [increment,Atom], + [ 'change-state!', + Atom, + [ +, + 1, + ['get-state',Atom]]]). + +metta_defn_ES( + ['UpdateReasonerState'], + [ [ increment , '¤tTime' ], + [ increment ,'&evidentialBase']]). + +metta_defn_ES( + ['GetReasonerState'], + [ ['get-state','¤tTime'], + [ [ 'get-state' ,'&evidentialBase']]]). + +%;priority of events +metta_defn_ES( + [ 'EventPriorityNow', + [T,P], + T], + [ *, + P, + [ /, + 1, + [ +, + 1, + [-,T,T]]]]). + +%;retrieve the best candidate (allows to use tuples / collapse results / spaces as a PQ) +:-metta_eval(['bind!','&tempbest',['new-state',[]]]). + +:-metta_eval(['bind!','&tempbestscore',['new-state',0]]). + +metta_defn_ES( + ['BestCandidate',Tuple,EvaluateCandidateFunction,T], + [ sequential, + [ [ do, + ['change-state!','&tempbestscore',0]], + [ do, + ['change-state!','&tempbest',[]]], + [ do, + [ 'let*', + [ [ X, + [superpose,Tuple]], + [ Fx, + [EvaluateCandidateFunction,X,T]]], + [ superpose, + [ [ 'If', + [ >, + Fx, + ['get-state','&tempbestscore']], + [ sequential, + [ [ 'change-state!' , '&tempbest' , X ], + [ 'change-state!' ,'&tempbestscore', Fx ]]]]]]]], + ['get-state','&tempbest']]]). + +%;functions to select highest-priority events in belief and goal PQ +metta_defn_ES( + [ 'PriorityOf', + [ 'Event', + Sentence, + [OccT,Ev,Prio]], + T], + ['EventPriorityNow',Prio,T]). + +metta_defn_ES( + ['SelectHighestPriorityEvent',Collection,T], + [ 'BestCandidate', + [ collapse, + ['get-atoms',Collection]], 'PriorityOf',T]). + +%;a belief event to process, which demands adding it to the PQ and updating its concept +metta_defn_ES( + ['ProcessBeliefEvent',Ev,T], + [ sequential, + [ [ 'add-atom' ,'&belief_events', Ev ], + [ 'UpdateConcept' , Ev , T ]]]). + +%;bound the size of the attentional focus for tasks / events +metta_defn_ES( + [ 'BoundEvents', Collection,Threshold, + Increment, TargetAmount, T], + [ sequential, + [ [ do, + [ 'let*', + [ [ Ev, + ['get-atoms',Collection]], + [ [ 'Event', + Sentence, + [Time,Evidence,EPrio]], + Ev]], + [ 'If', + [ <, + ['EventPriorityNow',EPrio,T], + Threshold], + ['remove-atom',Collection,Ev]]]], + [ let, + CurrentAmount, + [ 'CollapseCardinality', + ['get-atoms',Collection]], + [ 'If', + [>,CurrentAmount,TargetAmount], + [ 'BoundEvents', + Collection, + [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). + +%;params +metta_defn_ES(['AttentionalFocusConceptsMax'],10). + +%;spaces +:-metta_eval(['bind!','&concepts',['new-space']]). + +:-metta_eval(['bind!','&attentional_focus',['new-space']]). + +%;priority of concepts +metta_defn_ES( + [ 'ConceptPriorityNow', + [T,P], + T], + [ *, + P, + [ /, + 1, + [ +, + 1, + [-,T,T]]]]). + +%;whether evidence was just counted once +:-metta_eval(['bind!','&tempstate',['new-state','False']]). + +:-metta_eval(['bind!','&tempset',['new-space']]). + +metta_defn_ES( + ['StampDisjoint',X], + [ not, + [ sequential, + [ [ do, + ['change-state!','&tempstate','False']], + [ do, + [ case, + ['get-atoms','&tempset'], + [ [ Y, + ['remove-atom','&tempset',Y]]]]], + [ do, + [ let, + Z, + [superpose,X], + [ case, + [match,'&tempset',Z,Z], + [ [ W, + ['change-state!','&tempstate','True']], + [ '%void%', + ['add-atom','&tempset',Z]]]]]], + ['get-state','&tempstate']]]]). + +%;revise if there is no evidential overlap, else use higher-confident candidate +metta_defn_ES( + [ 'RevisionAndChoice', + [ 'Event', + [ Term1, + [F1,C1]], + [eternal,Ev1,EPrio1]], + [ 'Event', + [ Term2, + [F2,C2]], + [eternal,Ev2,EPrio2]]], + [ let, + ConclusionStamp, + ['TupleConcat',Ev1,Ev2], + [ 'If', + ['StampDisjoint',ConclusionStamp], + [ 'Event', + [ Term1, + [ 'Truth_Revision', + [F1,C1], + [F2,C2]]], + [ eternal, + ConclusionStamp, + [0,0.0]]], + [ 'If', + [>,C1,C2], + [ 'Event', + [ Term1, + [F1,C1]], + [ eternal, + Ev1, + [0,0.0]]], + [ 'Event', + [ Term2, + [F2,C2]], + [ eternal, + Ev2, + [0,0.0]]]]]]). + +%;;update beliefs in existing concept with the new event or create new concept to enter the new evidence +metta_defn_ES( + ['UpdateConcept',NewEvent,T], + [ 'let*', + [ [ [ 'Event', + [Term,TV], + [Time,Evidence,EPrio]], + NewEvent], + [ NewEventEternalized, + ['Eternalize',NewEvent]], + [ MatchConcept, + [ 'Concept', Term,Belief, + BeliefEvent,CPrio]]], + [ sequential, + [ [ case, + [match,'&attentional_focus',MatchConcept,MatchConcept], + [ [ MatchConcept, + [ sequential, + [ ['remove-atom','&attentional_focus',MatchConcept], + [ 'let*', + [ [ RevisedBelief, + ['RevisionAndChoice',Belief,NewEventEternalized]], + [ MaxPrio, + [ 'If', + [ >, + ['EventPriorityNow',EPrio,T], + ['ConceptPriorityNow',CPrio,T]], EPrio,CPrio]]], + [ 'add-atom', + '&attentional_focus', + [ 'Concept', Term, RevisedBelief, NewEvent, MaxPrio]]]]]], + [ '%void%', + [ case, + [match,'&concepts',MatchConcept,MatchConcept], + [ [ MatchConcept, + [ sequential, + [ [ 'remove-atom' , '&concepts' , MatchConcept ], + [ 'add-atom' ,'&attentional_focus', MatchConcept ], + [ 'UpdateConcept' , NewEvent , T ]]]], + [ '%void%', + [ 'add-atom', + '&attentional_focus', + [ 'Concept', Term, NewEventEternalized, NewEvent, EPrio]]]]]]]]]]]). + +%;bound the size of attentional focus of concepts +metta_defn_ES( + [ 'BoundAttention', Threshold,Increment, + TargetAmount,T], + [ sequential, + [ [ do, + [ 'let*', + [ [ C, + ['get-atoms','&attentional_focus']], + [ [ 'Concept', + Term, + ['Event',Sentence,Metadata], BeliefEvent,CPrio], + C]], + [ 'If', + [ <, + ['ConceptPriorityNow',CPrio,T], + Threshold], + [ sequential, + [ [ 'remove-atom' ,'&attentional_focus', C ], + [ 'add-atom' , '&concepts' , C ]]]]]], + [ let, + CurrentAmount, + [ 'CollapseCardinality', + ['get-atoms','&attentional_focus']], + [ 'If', + [>,CurrentAmount,TargetAmount], + [ 'BoundAttention', + [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). + +%;get eternal belief of concept +metta_type('&self','EternalQuestion',[->,'Expression',T]). + +metta_defn_ES( + ['EternalQuestion',Term], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', Term,Belief, + BeliefEvent,CPrio], + Belief], + [ [Ev,Ev], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;get event belief of concept +metta_type('&self','EventQuestion',[->,'Expression',T]). + +metta_defn_ES( + ['EventQuestion',Term], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', Term,Belief, + BeliefEvent,CPrio], + BeliefEvent], + [ [Ev,Ev], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [0,[],0.0]]]]]). + +%;;Declarative inference (deriving events and knowledge from observed events) +%;Derived belief event priority +metta_defn_ES( + ['ConclusionPriority',EPrio,CPrio,ConcTV], + [ *, + [*,EPrio,CPrio], + ['Truth_Expectation',ConcTV]]). + +%;making declarative inferences on two events (task from PQ and belief from concept) +metta_defn_ES( + [ 'Conclude', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + [ 'Event', + S2, + [Time2,Ev2,Prio2]], CPrio,T], + [ let, + ConclusionStamp, + ['TupleConcat',Ev1,Ev2], + [ 'If', + ['StampDisjoint',ConclusionStamp], + [ let, + [ConcTerm,ConcTV], + [ superpose, + [ [ '|-', S1 , S2 ], + [ '|-', S2 , S1 ]]], + [ 'Event', + [ConcTerm,ConcTV], + [ Time1, + ConclusionStamp, + [ T, + [ 'ConclusionPriority', + ['EventPriorityNow',Prio1,T], + ['ConceptPriorityNow',CPrio,T], + ConcTV]]]]]]]). + +%;find a belief for the task to generate conclusions with +metta_defn_ES( + [ 'ReasonWithTask', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + T], + [ let, + [Belief,CPrio], + [ case, + ['get-atoms','&attentional_focus'], + [ [ [ 'Concept', + Term, + [ 'Event', + SE2, + [TimeE2,EvE2,PrioE2]], + [ 'Event', + S2, + [Time2,Ev2,Prio2]], + CPrio], + [ 'If', + [ and, + [ not, + [==,Time1,eternal]], + [ >, + [ abs, + [-,Time1,Time2]], + 20]], + [ [ 'Event', + SE2, + [TimeE2,EvE2,PrioE2]], + Cprio], + [ [ 'Event', + S2, + [Time2,Ev2,Prio2]], + CPrio]]]]], + [ case, + [ 'Conclude', + [ 'Event', + S1, + [Time1,Ev1,Prio1]], + ['TemporallyAlignedBelief',Time1,Belief], CPrio,T], + [ [ ['Event',Num1,Num2], + [ 'ProcessBeliefEvent', + ['Event',Num1,Num2], + T]]]]]). + +%;select the highest priority belief event from the PQ and use it for reasoning +metta_defn_ES( + ['BeliefCycle',T], + [ do, + [ sequential, + [ [ let, + Ev, + ['SelectHighestPriorityEvent','&belief_events',T], + [ sequential, + [ [ 'remove-atom' ,'&belief_events', Ev ], + [ 'ReasonWithTask', Ev , T ]]]], + ['UpdateReasonerState'], + [ 'BoundEvents', '&belief_events',0.0,0.1, + ['BeliefEventsMax'], + T], + [ 'BoundAttention', 0.0,0.1, + ['AttentionalFocusConceptsMax'], + T]]]]). + +%;;Temporal inference (sequence and implication formation based on FIFO) +%;use the event's evidence to induce a time-independent belief which can be used in the future +metta_defn_ES( + ['Eternalize',Ev], + [ let, + [ 'Event', + [Term,TV], + [Time,Evidence,EPrio]], + Ev, + [ 'If', + [==,Time,eternal], + Ev, + [ 'Event', + [ Term, + ['Truth_Eternalize',TV]], + [ eternal, + Evidence, + [0,0.0]]]]]). + +%;use evidence of an event at a slightly different moment in time +metta_defn_ES( + [ 'Projection', + [ 'Event', + [ Term, + [F,C]], + [Time,Evidence,EPrio]], + TargetTime], + [ 'Event', + [ Term, + [ F, + [ *, + C, + [ min, + 1, + [ /, + 1, + [ abs, + [-,Time,TargetTime]]]]]]], + [TargetTime,Evidence,EPrio]]). + +%;make the belief occurrence time compatible with the task's +metta_defn_ES( + ['TemporallyAlignedBelief',TaskTime,Belief], + [ 'If', + [==,TaskTime,eternal], + ['Eternalize',Belief], + ['Projection',Belief,TaskTime]]). + +%;FIFO max. size bound +:-metta_eval(['bind!','&FIFO',['new-state',[]]]). + +metta_defn_ES(['ListFirstK',C,[]],[]). + +metta_defn_ES( + [ 'ListFirstK', + C, + [LH,LT]], + [ 'If', + [>,C,0], + [ LH, + [ 'ListFirstK', + [-,C,1], + LT]], + []]). + +%;Add event to FIFO +metta_defn_ES( + ['EventToFIFO',Ev], + [ let, + Newlist, + [ 'ListFirstK', + 3, + [ Ev, + ['get-state','&FIFO']]], + ['change-state!','&FIFO',Newlist]]). + +%;Form a sequence of two events +metta_defn_ES( + [ 'TemporalSequence', + Ev1, + [ 'Event', + [Term2,Truth2], + [Time2,Evidence2,EPrio2]]], + [ let, + [ 'Event', + [Term1,Truth1], + [Time1,Evidence1,EPrio1]], + ['Projection',Ev1,Time2], + [ 'Event', + [ [ Term1 , &/ , Term2 ], + [ 'Truth_Intersection', Truth1 , Truth2 ]], + [ Time2, + ['TupleConcat',Evidence1,Evidence2], + [0,0.0]]]]). + +%;Form a temporal implication between two events +metta_defn_ES( + [ 'TemporalImplication', + Ev1, + [ 'Event', + [Term2,Truth2], + [Time2,Evidence2,EPrio2]]], + [ let, + [ 'Event', + [Term1,Truth1], + [Time1,Evidence1,EPrio1]], + ['Projection',Ev1,Time2], + [ 'Event', + [ [ Term1 , =/> , Term2 ], + [ 'Truth_Induction', Truth1 , Truth2 ]], + [ Time2, + ['TupleConcat',Evidence1,Evidence2], + [0,0.0]]]]). + +%;Whether an event's term is an operation +metta_defn_ES( + [ 'IsOp', + [ 'Event', + [Term,Truth], + Metadata]], + [ case, + Term, + [ [ [^,Opname], + 'True'], + [Otherwise,'False']]]). + +%;Find implications in the event FIFO: +%;procedural implications +metta_defn_ES( + [ 'TemporalImplicationInduction', + [ Cons, + [ Op, + [Prec,Tail]]]], + [ 'If', + [ and, + ['IsOp',Op], + [ and, + [ not, + ['IsOp',Cons]], + [ not, + ['IsOp',Prec]]]], + [ let, + PrecOp, + ['TemporalSequence',Prec,Op], + ['TemporalImplication',PrecOp,Cons]]]). + +%;and temporal without operation +metta_defn_ES( + [ 'TemporalImplicationInduction', + [ Cons, + [Prec,Tail]]], + [ 'If', + [ and, + [ not, + ['IsOp',Prec]], + [ not, + ['IsOp',Cons]]], + ['TemporalImplication',Prec,Cons]]). + +%;Add negative evidence for implications which predicted the input unsuccessfully +metta_defn_ES( + ['NegConfirmation',PrecTerm,ObservedCons,T], + [ let, + [ 'Event', + [ [PrecTerm,=/>,PredictedCons], + ImpTV], + ImpMetadata], + [ 'EternalQuestion', + [PrecTerm,=/>,PredictedCons]], + [ 'If', + [ not, + [==,ObservedCons,PredictedCons]], + [ 'UpdateConcept', + [ 'Event', + [ [ PrecTerm , =/> ,PredictedCons], + [ 0.0 , 0.1 ]], + [ T, + [], + [0,0.0]]], + T]]]). + +%;Check if the implication's preconditions are met to anticipate the by the implication predicted outcome +get_metta_atom(Eq, '&self', [ + =, + [ 'Anticipate', + [Pos,[]], + T]]). + +metta_defn_ES( + [ 'Anticipate', + [ Pos, + [Pre,[]]], + T], + [ 'let*', + [ [ [ 'Event', + [PreTerm,PreTV], + PreMetadata], + Pre], + [ [ 'Event', + [PosTerm,PosTV], + PosMetadata], + Pos]], + [ 'If', + [ not, + ['IsOp',Pre]], + ['NegConfirmation',PreTerm,PosTerm,T]]]). + +metta_defn_ES( + [ 'Anticipate', + [ Pos, + [ Op, + [Pre,Trail]]], + T], + [ 'let*', + [ [ [ 'Event', + [PreTerm,PreTV], + PreMetadata], + Pre], + [ [ 'Event', + [OpTerm,OpTV], + OpMetadata], + Op], + [ [ 'Event', + [PosTerm,PosTV], + PosMetadata], + Pos], + [ Sequence, + [Pre,&/,'Pos']]], + [ 'If', + [ and, + ['IsOp',Op], + [ not, + ['IsOp',Pre]]], + [ 'NegConfirmation', + [PreTerm,&/,OpTerm], PosTerm,T]]]). + +%;;Input procedure +metta_defn_ES( + ['AddBeliefEvent',Sentence], + [ 'let*', + [ [ [ T , EvidentialBase ], + [ 'GetReasonerState']], + [ InputEvent, + [ 'Event', + Sentence, + [ T, + EvidentialBase, + [T,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',InputEvent], + [ let, + InducedHypothesis, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',InducedHypothesis,T]], + ['ProcessBeliefEvent',InputEvent,T], + [ 'Anticipate', + ['get-state','&FIFO'], + T], + ['BeliefCycle',T]]]]]). + +%;;Procedural inference (decision making with operation execution and subgoaling) +%;Derived goal event priority +metta_defn_ES( + ['SubgoalPriority',EPrio,ConcTV], + [ *, + EPrio, + ['Truth_Expectation',ConcTV]]). + +%;Expectation of an operation is the truth expectation of its desire value +metta_defn_ES( + [ 'OpExpectation', + [ 'Decision', + [Opname,DVOp], + Subgoal], + T], + ['Truth_Expectation',DVOp]). + +%;Inject executed operation as an event and return its name +metta_defn_ES( + ['Execute',Opname], + [ superpose, + [ [ 'AddBeliefEvent', + [ Opname, + [1.0,0.9]]], + Opname]]). + +%;Add subgoals to the PQ +metta_defn_ES( + ['DeriveSubgoals',Options], + [ do, + [ let, + ['Decision',Op,Subgoal], + [superpose,Options], + ['add-atom','&goal_events',Subgoal]]]). + +%;execute the operation which most likely gets the goal achieved in current contexts, and if contexts are not yet fulfilled, derive them as subgoals +metta_defn_ES( + [ 'BestDecision', + T, + [ 'Event', + [Term,DV], + [GoalTime,GoalEvBase,GoalPrio]], + FIFO], + [ let, + Options, + [ collapse, + [ 'let*', + [ [ [ 'Event', + [ [ [ Prec, + &/, + [^,Op]], =/>,Term], + ImpTV], + [ImpTime,ImpEvBase,ImpPrio]], + [ 'EternalQuestion', + [ [ Prec, + &/, + [^,Op]], =/>,Term]]], + [ DVPrecOp, + ['Truth_Deduction',DV,ImpTV]], + [ [ 'Event', + [PrecTerm,PrecTV], + PrecMetadata], + [ 'Projection', + ['EventQuestion',Prec], + T]], + [ DVOp, + ['Truth_Deduction',PrecTV,DVPrecOp]], + [ DVPrec, + ['Truth_StructuralDeduction',DVPrecOp]], + [ SubgoalStamp, + ['TupleConcat',GoalEvBase,ImpEvBase]]], + [ 'If', + ['StampDisjoint',SubgoalStamp], + [ 'Decision', + [ [^,Op], + DVOp], + [ 'Event', + [ Prec, + ['Truth_StructuralDeduction',DVPrecOp]], + [ T, + SubgoalStamp, + [ T, + [ 'SubgoalPriority', + ['EventPriorityNow',GoalPrio,T], + DVPrec]]]]]]]], + [ let, + [ 'Decision', + [Opname,DVOp], + Subgoal], + ['BestCandidate',Options,'OpExpectation',T], + [ 'If', + [ >, + ['Truth_Expectation',DVOp], + 0.5], + ['Execute',Opname], + ['DeriveSubgoals',Options]]]]). + +%;;select the highest priority goal event from the PQ and use it for decision making +metta_defn_ES( + ['GoalCycle',T], + [ sequential, + [ [ let, + Ev, + ['SelectHighestPriorityEvent','&goal_events',T], + [ sequential, + [ [ do, + ['remove-atom','&goal_events',Ev]], + [ 'BestDecision', T,Ev, + ['get-state','&FIFO']]]]], + [ do, + ['UpdateReasonerState']], + [ do, + [ 'BoundEvents', '&goal_events',0.0,0.1, + ['GoalEventsMax'], + T]]]]). + +%;;Input procedure +metta_defn_ES( + ['AddGoalEvent',Sentence], + [ 'let*', + [ [ [ T , EvidentialBase ], + [ 'GetReasonerState']], + [ InputEvent, + [ 'Event', + Sentence, + [ T, + EvidentialBase, + [T,1.0]]]]], + [ sequential, + [ [ do, + ['add-atom','&goal_events',InputEvent]], + ['GoalCycle',T]]]]). + +:-metta_eval([print,'$STRING'("NARS test!!!!!!!!!!!!!!!!!!")]). + +:-metta_eval(['metta_learner::vspace-main']). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ ['{',garfield,'}'], -->,cat], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ [cat,*,sky], -->,like], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ sky, + -->, + [ '$OBJ'(claz_bracket_vector,[blue])]], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +%;The following question needs both a deduction and abduction step: +( :- ( + metta_eval( [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.2965825874694874)) (eternal (Cons 2 (Cons 1 (Cons 3 Nil))) 0.643288027761712))] +%;Lets stress the control mechanism as these type of events with common extension or intension causes dozens of derivations: +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ A ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'A',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'A',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ B ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'B',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'B',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ C ,-->,cat], + [ 1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ 'C',-->,cat], + [ 1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ 'C',-->,cat], + [ 1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +:-metta_eval(['EternalQuestion',[['A',&,'B'],-->,cat]]). + +metta_defn_ES( + [ 'EternalQuestion', + [['A',&,'B'],-->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [['A',&,'B'],-->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((A & B) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 4 (Cons 5 Nil)) (5 0.4525)))] +:-metta_eval(['EternalQuestion',[['B',&,'C'],-->,cat]]). + +metta_defn_ES( + [ 'EternalQuestion', + [['B',&,'C'],-->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [['B',&,'C'],-->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((B & C) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 5 (Cons 6 Nil)) (6 0.4525)))] +( :- ( + metta_eval( [ 'EternalQuestion', + [ [['A',&,'B'],&,'C'], -->,cat]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [['A',&,'B'],&,'C'], -->,cat]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [['A',&,'B'],&,'C'], -->,cat], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event ((((A & B) & C) --> cat) (1.0 0.42163100057836905)) (eternal (Cons 5 (Cons 4 (Cons 6 Nil))) (6 0.195593125))) +( :- ( + metta_eval( [ 'AddBeliefEvent', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]]])) ). + +metta_defn_ES( + [ 'AddBeliefEvent', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]]], + [ 'let*', + [ [ [ A , B ], + [ 'GetReasonerState']], + [ C, + [ 'Event', + [ [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], + [1.0,0.9]], + [ A, + B, + [A,1.0]]]]], + [ do, + [ sequential, + [ ['EventToFIFO',C], + [ let, + D, + [ 'TemporalImplicationInduction', + ['get-state','&FIFO']], + ['UpdateConcept',D,A]], + ['ProcessBeliefEvent',C,A], + [ 'Anticipate', + ['get-state','&FIFO'], + A], + ['BeliefCycle',A]]]]]). + +( :- ( + metta_eval( [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). + +metta_defn_ES( + [ 'EternalQuestion', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], + [ case, + [ match, + [ superpose, + ['&attentional_focus','&concepts']], + [ 'Concept', + [ [ ['{',garfield,'}'], + *, + [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], + A], + [ [B,B], + [ '%void%', + [ 'Event', + [ 'None', + [0.5,0.0]], + [eternal,[],0.0]]]]]). + +%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.5692683291397822)) (eternal (Cons 7 (Cons 2 (Cons 1 (Cons 3 Nil)))) 0.0))] +%;Please notice that it has revised it with the prior derived result, as you can also see in the evidence trail 1,2,3 being included +:-metta_eval(['metta_learner::vspace-main']). + +%;debug: +:-metta_eval(['CollapseCardinality',['get-atoms','&belief_events']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&belief_events']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&belief_events']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&belief_events']], + [ case, + ['get-atoms','&belief_events'], + [ [ _,1]]]). + +%;[8] +:-metta_eval(['CollapseCardinality',['get-atoms','&attentional_focus']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&attentional_focus']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&attentional_focus']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&attentional_focus']], + [ case, + ['get-atoms','&attentional_focus'], + [ [ _,1]]]). + +%;[8] +:-metta_eval(['CollapseCardinality',['get-atoms','&concepts']]). + +metta_defn_ES( + [ 'CollapseCardinality', + ['get-atoms','&concepts']], + [ 'TupleCount', + [ collapse, + [ 'CountElement', + ['get-atoms','&concepts']]]]). + +metta_defn_ES( + [ 'CountElement', + ['get-atoms','&concepts']], + [ case, + ['get-atoms','&concepts'], + [ [ _,1]]]). + +%;[100] +:-metta_eval(['metta_learner::vspace-main']). + +% 17,439,387 inferences, 1.561 CPU in 1.572 seconds (99% CPU, 11172049 Lips) + diff --git a/metta_vspace/pyswip-want/metta_testing.pl b/metta_vspace/pyswip-want/metta_testing.pl new file mode 100755 index 00000000..8d960b9a --- /dev/null +++ b/metta_vspace/pyswip-want/metta_testing.pl @@ -0,0 +1,1175 @@ +/* + this is part of (H)MUARC https://logicmoo.org/xwiki/bin/view/Main/ARC/ + + This work may not be copied and used by anyone other than the author Douglas Miles + unless permission or license is granted (contact at business@logicmoo.org) +*/ +%:- encoding(iso_latin_1). + +:- ensure_loaded(library(occurs)). +:- ensure_loaded(metta_utils). + +% Reset loonit counters +loonit_reset :- + flush_output, + loonit_report, + flush_output, + flag(loonit_failure, _, 0), + flag(loonit_success, _, 0). + +has_loonit_results :- loonit_number(FS),FS>1. + +loonit_number(FS) :- flag(loonit_test_number,FS,FS),FS>0,!. +loonit_number(FS) :- + flag(loonit_success, Successes, Successes), + flag(loonit_failure, Failures, Failures), + FS is Successes+Failures+1. + + +string_replace(Original, Search, Replace, Replaced) :- + atomic_list_concat(Split, Search, Original), + atomic_list_concat(Split, Replace, Replaced),!. + +get_test_name(Number,TestName) :- + ((nb_current(loading_file,FilePath),FilePath\==[])->true; FilePath='SOME/UNIT-TEST'), + make_test_name(FilePath, Number, TestName). + +ensure_basename(FilePath,FilePath):- \+ directory_file_path(('.'), _, FilePath),!. +ensure_basename(FilePath0,FilePath):- + absolute_file_name(FilePath0,FilePath),!. +ensure_basename(FilePath,FilePath). + +make_test_name(FilePath0, Number, TestName) :- + % Extract the file name and its parent directory from the file path + ensure_basename(FilePath0,FilePath), + file_base_name(FilePath, FileName), + directory_file_path(ParentDir, FileName, FilePath), + file_base_name(ParentDir, ParentDirBase), + % Remove file extension + file_name_extension(Base, _, FileName), + % Convert to uppercase + string_upper(ParentDirBase, UpperParentDirBase), + string_upper(Base, UpperBase), + % Replace "_" with "-" + string_replace(UpperBase, "_", "-", NoUnderscore), + string_replace(UpperParentDirBase, "_", "-", NoUnderscoreParent), + % Format the test name + wots(NS,format('~`0t~d~2|',[Number])), + format(string(TestName), "~w.~w.~w", [NoUnderscoreParent, NoUnderscore, NS]). + + +%color_g_mesg(C,G):- silent_loading,!. +color_g_mesg(C,G):- notrace((nop(check_silent_loading),color_g_mesg_ok(C,G))). +color_g_mesg_ok(C,G):- + quietly(( + wots(S,must_det_ll(user:G)), + (S == "" -> true ; our_ansi_format(C, '~w~n', [S])))),!. + +our_ansi_format(C, Fmt,Args):- \+ atom(C), % set_stream(current_output,encoding(utf8)), + ansi_format(C, Fmt,Args). +our_ansi_format(C, Fmt,Args):- our_ansi_format([fg(C)], Fmt,Args). + +print_current_test:- + loonit_number(Number), + get_test_name(Number,TestName),format(';

    ;; ~w

    ~n',[TestName,TestName]). + +% Increment loonit counters based on goal evaluation +loonit_asserts(S,Pre,G):- + flag(loonit_test_number,X,X+1), + copy_term(Pre,Pro), + print_current_test, + once(Pre), + ((nb_current(exec_src,Exec),Exec\==[])->true;S=Exec), + % wots(S,((((nb_current(exec_src,WS),WS\==[])->writeln(WS);write_src(exec(TestSrc)))))), + once(loonit_asserts1(Exec,Pro,G)). + +give_pass_credit(TestSrc,_Pre,_G):- + inside_assert(TestSrc,BaseEval), + always_exec(BaseEval),!. +give_pass_credit(TestSrc,_Pre,G):- + write_pass_fail(TestSrc,'PASS',G), + flag(loonit_success, X, X+1),!, + color_g_mesg(cyan,write_src(loonit_success(G))),!. + +write_pass_fail([P,C,_],PASS_FAIL,G):- + must_det_ll(( + loonit_number(Number), + get_test_name(Number,TestName), + arg(1,G,G1),arg(2,G,G2), write_pass_fail(TestName,P,C,PASS_FAIL,G1,G2))). + +write_pass_fail(TestName,P,C,PASS_FAIL,G1,G2):- + ignore((( + (nb_current(loading_file,FilePath),FilePath\==[])->true; FilePath='SOME/UNIT-TEST.metta'), + atomic_list_concat([_,R],'examples/',FilePath), + file_name_extension(Base, _, R))), + nop(format('

    ;; ~w

    ',[TestName,TestName])), + + if_t( (tee_file(TEE_FILE)->true;'TEE.ansi'=TEE_FILE), + (%atom_concat(TEE_FILE,'.UNITS',UNITS), + UNITS = '/tmp/SHARED.UNITS', + open(UNITS, append, Stream,[encoding(utf8)]), + format(Stream,'| ~w | [~w](https://htmlpreview.github.io/?https://raw.githubusercontent.com/logicmoo/vspace-metta/main/reports/~w.metta.html#~w) | ~@ | ~@ | ~@ |~n', + [PASS_FAIL,TestName,Base,TestName,trim_gstring(with_indents(false,write_src([P,C])),200), + trim_gstring(with_indents(false,write_src(G1)),100),with_indents(false,write_src(G2))]),!, + close(Stream))). + +trim_gstring(Goal, MaxLen) :- + wots(String,Goal), + atom_length(String, Len), + ( Len =< MaxLen + -> Trimmed = String + ; SubLen is MaxLen, + sub_atom(String, 0, SubLen, _, SubStr), + string_concat(SubStr, "...", Trimmed) + ), + write(Trimmed). + +loonit_asserts1(TestSrc,Pre,G) :- nop(Pre), + call(G), !, + give_pass_credit(TestSrc,Pre,G),!. + +loonit_asserts1(TestSrc,Pre,G) :- + sub_var('BadType',TestSrc), \+ check_type,!, + write('\n!check_type (not considering this a failure)\n'), + color_g_mesg('#D8BFD8',write_src(loonit_failureR(G))),!, + ignore((( + option_value('on-fail','trace'), + setup_call_cleanup(debug(metta(eval)),call((Pre,G)),nodebug(metta(eval)))))). + + +loonit_asserts1(TestSrc,Pre,G) :- + write_pass_fail(TestSrc,'FAIL',G), + ((sub_var('BadType',TestSrc), \+ check_type) -> write('\n!check_type (not considering this a failure)\n') ; + flag(loonit_failure, X, X+1)), !, + color_g_mesg(red,write_src(loonit_failureR(G))),!, + %itrace, G. + ignore((( + % repl + option_value('on-fail','trace'), + setup_call_cleanup(debug(metta(eval)),call((Pre,G)),nodebug(metta(eval)))))). + %(thread_self(main)->trace;sleep(0.3)) + +% Generate loonit report with colorized output +:- dynamic(gave_loonit_report/0). +loonit_report:- gave_loonit_report,!. +loonit_report :- +% assert(gave_loonit_report), + flag(loonit_success, Successes, Successes), + flag(loonit_failure, Failures, Failures), + loonit_report(Successes,Failures). + +:- at_halt(loonit_report). + + +loonit_report(0,0):-!. % ansi_format([fg(yellow)], 'Nothing to report~n', []). +loonit_report(Successes,Failures):- + ansi_format([bold], 'LoonIt Report~n',[]), + format('------------~n'), + ansi_format([fg(green)], 'Successes: ~w~n', [Successes]), + ((integer(Failures),Failures>0) -> ansi_format([fg(red)], 'Failures: ~w~n', [Failures]);ansi_format([fg(green)], 'Failures: ~w~n', [Failures])). + +% Resets loonit counters, consults the given file, and prints the status report. +loon_metta(File) :- + flag(loonit_success, WasSuccesses, 0), + flag(loonit_failure, WasFailures, 0), + load_metta(File), + loonit_report, + flag(loonit_success, _, WasSuccesses), + flag(loonit_failure, _, WasFailures),!. + + +:- dynamic(file_answers/3). +:- dynamic(file_exec_num/2). + +% set_exec_num/2 +% Update or assert the execution number for the given file. + +set_exec_num(SFileName, Val) :- + absolute_file_name(SFileName,FileName), + ( retract(file_exec_num(FileName, _)) % If an entry exists, retract it + -> true + ; true % Otherwise, do nothing + ), + asserta(file_exec_num(FileName, Val)). % Assert the new value + +% get_exec_num/2 +% Retrieve the execution number for the given file. If none exists, it returns 0. +get_exec_num(Val):- + current_exec_file_abs(FileName), + file_exec_num(FileName, Val),!. +get_exec_num(FileName, Val) :- + ( file_exec_num(FileName, CurrentVal) + -> Val = CurrentVal + ; Val = 0 + ). + + current_exec_file_abs(FileName):- + current_exec_file(SFileName), + absolute_file_name(SFileName,FileName),!. + + +get_expected_result(Ans):- + ignore(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + file_answers(FileName, Nth, Ans))),!. + + + +got_exec_result(Val):- + ignore(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + file_answers(FileName, Nth, Ans), + got_exec_result(Val,Ans))). + + +got_exec_result(Val,Ans):- + must_det_ll(( + current_exec_file_abs(FileName), + file_exec_num(FileName, Nth), + Nth100 is Nth+100, + get_test_name(Nth100,TestName), + nb_current(exec_src,Exec), + (equal_enough_for_test(Val,Ans) + -> write_pass_fail_result(TestName,exec,Exec,'PASS',Ans,Val) + ; write_pass_fail_result(TestName,exec,Exec,'FAIL',Ans,Val)))). + +write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val):- + nl,writeq(write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val)),nl, + write_pass_fail(TestName,exec,Exec,PASS_FAIL,Ans,Val). + + +current_exec_file(FileName):- nb_current(loading_file,FileName). + +% inc_exec_num/1 +% Increment the execution number for the given file. If no entry exists, initialize it to 1. +inc_exec_num :- current_exec_file_abs(FileName),!,inc_exec_num(FileName). +inc_exec_num(FileName) :- + ( retract(file_exec_num(FileName, CurrentVal)) + -> NewVal is CurrentVal + 1 + ; NewVal = 1 + ), + asserta(file_exec_num(FileName, NewVal)). + + +load_answer_file(File):- ( \+ atom(File); \+ is_absolute_file_name(File); \+ exists_file(File)), + absolute_file_name(File,AbsFile), File\=@=AbsFile, load_answer_file_now(AbsFile),!. +load_answer_file(File):- load_answer_file_now(File),!. +load_answer_file_now(File) :- + ignore(( + ensure_extension(File, answers, AnsFile), + remove_specific_extension(AnsFile, answers, StoredAs), + set_exec_num(StoredAs,1), + fbug(load_answer_file(AnsFile,StoredAs)), + load_answer_file(AnsFile,StoredAs))). + +load_answer_file(AnsFile,StoredAs):- + ( file_answers(StoredAs,_, _) -> true + ; ( \+ exists_file(AnsFile) -> true + ; (setup_call_cleanup( + open(AnsFile, read, Stream, [encoding(utf8)]), + (load_answer_stream(1,StoredAs, Stream)), + close(Stream))))), + set_exec_num(StoredAs,1),!. + +:- debug(metta(answers)). +load_answer_stream(_Nth, StoredAs, Stream):- at_end_of_stream(Stream),!, + if_trace(metta(answers), + prolog_only(listing(file_answers(StoredAs,_,_)))). +load_answer_stream(Nth, StoredAs, Stream):- + read_line_to_string(Stream, String), + load_answer_stream(Nth, StoredAs, String, Stream). +/* +load_answer_stream(Nth, StoredAs, String, Stream) :- fail, + atom_chars(String,Chars), + count_brackets(Chars, 0, 0, Balance), + ( Balance =< 0 + -> StoredAs = String + ; read_line_to_string(Stream, NextString), + string_concat(String, "\n", StringWithNewLine), + string_concat(StringWithNewLine, NextString, CombinedString), + load_answer_stream(Nth, StoredAs, CombinedString, Stream) + ). +*/ +load_answer_stream(Nth, StoredAs, String, Stream):- % string_concat("[",_,String),!, + fbug(Nth = String), + parse_answer_string(String,Metta),!, + %if_t(sub_var(',',Metta),rtrace(parse_answer_string(String,_Metta2))), + assert(file_answers(StoredAs,Nth,Metta)), + skip(must_det_ll(\+ sub_var(',',Metta))), + Nth2 is Nth+1,load_answer_stream(Nth2, StoredAs, Stream). + +load_answer_stream(Nth, StoredAs, _, Stream):- load_answer_stream(Nth, StoredAs, Stream). +/* +count_brackets([], Open, Close, Balance) :- !, + Balance is Open - Close. +count_brackets([Char|Rest], Open, Close, Balance) :- + (((( Char == '[' + -> NewOpen is Open + 1 + ; (Char == ']' + -> NewClose is Close + 1 + ; (NewOpen = Open, + NewClose = Close)))))), + count_brackets(Rest, NewOpen, NewClose, Balance). +*/ +parse_answer_string("[]",[]):- !. +%parse_answer_string(String,Metta):- string_concat("(",_,String),!,parse_sexpr_metta(String,Metta),!. +parse_answer_string(String,_Metta):- string_concat("[(Error (assert",_,String),!,fail. +parse_answer_string(String,_Metta):- string_concat("Expected: [",Mid,String),string_concat(_Expected_Inner,"]",Mid),!,fail. +parse_answer_string(String,Metta):- string_concat("Got: [",Mid,String),string_concat(Got_Inner,"]",Mid),!,parse_answer_inner(Got_Inner,Metta). +parse_answer_string(String,Metta):- string_concat("[",Mid,String),string_concat(Inner0,"]",Mid),!,parse_answer_inner(Inner0,Metta). + + +parse_answer_inner(Inner0,Metta):- must_det_ll(( replace_in_string([', '=' , '],Inner0,Inner), parse_answer_str(Inner,Metta), + skip((\+ sub_var(',',rc(Metta)))))). + +parse_answer_str(Inner,[C|Metta]):- + atomics_to_string(["(",Inner,")"],Str), + parse_sexpr_metta(Str,CMettaC), CMettaC=[C|MettaC], + ((remove_m_commas(MettaC,Metta), + \+ sub_var(',',rc(Metta)))). +parse_answer_str(Inner0,Metta):- atomic_list_concat(InnerL,' , ',Inner0), maplist(atom_string,InnerL,Inner), maplist(parse_sexpr_metta,Inner,Metta),skip((must_det_ll(( \+ sub_var(',',rc2(Metta)))))),!. +parse_answer_str(Inner0,Metta):- + (( replace_in_string([' , '=' '],Inner0,Inner), + atomics_to_string(["(",Inner,")"],Str),!, + parse_sexpr_metta(Str,Metta),!, + skip((must_det_ll(\+ sub_var(',',rc3(Metta))))), + skip((\+ sub_var(',',rc(Metta)))))). + +%parse_answer_string(String,Metta):- String=Metta,!,fail. + +remove_m_commas(Metta,Metta):- \+ sub_var(',',Metta),!. +remove_m_commas([C,H|T],[H|TT]):- C=='and', !, remove_m_commas(T,TT). +remove_m_commas([C,H|T],[H|TT]):- C==',', !, remove_m_commas(T,TT). +remove_m_commas([H|T],[H|TT]):- !, remove_m_commas(T,TT). + + +% Example usage: +% ?- change_extension('path/to/myfile.txt', 'pdf', NewFileName). +% NewFileName = 'path/to/myfile.pdf'. +change_extension(OriginalFileName, NewExtension, NewBaseName) :- + %file_base_name(OriginalFileName, BaseName), % Extract base name + file_name_extension(BaseWithoutExt, _, OriginalFileName), % Split extension + file_name_extension(BaseWithoutExt, NewExtension, NewBaseName),!. % Create new base name with new extension + %directory_file_path(Directory, NewBaseName, NewFileName). % Join with directory path +% Example usage: +% ?- ensure_extension('path/to/myfile.txt', 'txt', NewFileName). +% NewFileName = 'path/to/myfile.txt'. +ensure_extension(OriginalFileName, Extension, NewFileName) :- + file_name_extension(_, CurrentExt, OriginalFileName), + ( CurrentExt = Extension + -> NewFileName = OriginalFileName + ; atom_concat(OriginalFileName, '.', TempFileName), + atom_concat(TempFileName, Extension, NewFileName) + ). +% Example usage: +% ?- remove_specific_extension('path/to/myfile.txt', 'txt', NewFileName). +% NewFileName = 'path/to/myfile'. + +% ?- remove_specific_extension('path/to/myfile.txt', 'pdf', NewFileName). +% NewFileName = 'path/to/myfile.txt'. +remove_specific_extension(OriginalFileName, Extension, FileNameWithoutExtension) :- + file_name_extension(FileNameWithoutExtension, Ext, OriginalFileName), + ( Ext = Extension -> true ; FileNameWithoutExtension = OriginalFileName ). + + +quick_test:- + %set_prolog_flag(encoding,iso_latin_1), + forall(quick_test(Test), + forall(open_string(Test,Stream), + load_metta_stream('&self',Stream))). + +/* + tests for term expander + + +*/ +% :- debug(term_expansion). +:- if(debugging(term_expansion)). +:- enable_arc_expansion. +:- style_check(-singleton). +dte:- set(_X.local) = val. +dte:- gset(_X.global) = gval. +dte:- must_det_ll((set(_X.a) = b)). +dte:- must_det_ll(locally(nb_setval(e,X.locally),dte([foo|set(X.tail)]))). +dte:- member(set(V.element),set(V.list)). +dte(set(E.v)):- set(E.that)=v. +:- style_check(+singleton). +:- disable_arc_expansion. +:- listing(dte). +:- endif. + + + +% 1. Recursive Approach +factorial_recursive(0, 1). +factorial_recursive(N, Result) :- + N > 0, + N1 is N - 1, + factorial_recursive(N1, Result1), + Result is N * Result1. + +% 2. Tail Recursive Approach +factorial_tail_recursive(N, Result) :- factorial_tail_helper(N, 1, Result). + +factorial_tail_helper(0, Acc, Acc). +factorial_tail_helper(N, Acc, Result) :- + N > 0, + NewAcc is Acc * N, + N1 is N - 1, + factorial_tail_helper(N1, NewAcc, Result). + +% 3. Accumulator Approach +factorial_accumulator(N, Result) :- factorial_acc(N, 1, Result). + +factorial_acc(0, Result, Result). +factorial_acc(N, Acc, Result) :- + N > 0, + NewAcc is Acc * N, + N1 is N - 1, + factorial_acc(N1, NewAcc, Result). + +% You can test each one by querying, for example: +% ?- factorial_recursive(5, X + + + + + + +% Example-usage +example_usages :- + fetch_or_create_space(newSpace,Space), % Assuming fetch_or_create_space/1 is defined to initialize a space + 'add-atom'(Space, a), + 'add-atom'(Space, b), + 'add-atom'(Space, c), + 'match'(Space, a, Template), + write('Matched template: '), writeln(Template), + + + write('Initial space: '), writeln(Space), + + 'add-atom'(Space, a), + write('Space after adding "a": '), writeln(Space), + + 'add-atom'(Space, b), + write('Space after adding "b": '), writeln(Space), + + 'replace-atom'(Space, a, c), + write('Space after replacing "a" with "c": '), writeln(Space), + + 'get-atoms'(Space, Atoms), + write('Atoms in space: '), writeln(Atoms), + + 'atom-count'(Space, Count), + write('Number of atoms in space: '), writeln(Count). + +% Test case for clearing a space +test_clear_space :- + writeln('Test: Clearing a space'), + init_space('&kb1'), + 'add-atom'('&kb1', a), + 'add-atom'('&kb1', b), + writeln('Expected Count Before Clearing: 2'), + 'atom-count'('&kb1', CountBefore), writeln('Actual Count:'), writeln(CountBefore), + writeln('Expected Atoms Before Clearing: [b, a]'), + 'get-atoms'('&kb1', AtomsBefore), writeln('Actual Atoms:'), writeln(AtomsBefore), + 'clear-atoms'('&kb1'), + writeln('Expected Count After Clearing: 0'), + 'atom-count'('&kb1', CountAfter), writeln('Actual Count:'), writeln(CountAfter), + writeln('Expected Atoms After Clearing: []'), + 'get-atoms'('&kb1', AtomsAfter), writeln('Actual Atoms:'), writeln(AtomsAfter). + +% Test case for various operations on a space +test_operations :- + writeln('Test: Various Operations on a Space'), + init_space('&kb2'), + 'add-atom'('&kb2', a), + 'add-atom'('&kb2', b), + writeln('Expected Count After Adding: 2'), + 'atom-count'('&kb2', Count1), writeln('Actual Count:'), writeln(Count1), + writeln('Expected Atoms After Adding: [b, a]'), + 'get-atoms'('&kb2', Atoms1), writeln('Actual Atoms:'), writeln(Atoms1), + 'remove-atom'('&kb2', a), + writeln('Expected Atoms After Removing a: [b]'), + 'get-atoms'('&kb2', Atoms2), writeln('Actual Atoms:'), writeln(Atoms2), + 'replace-atom'('&kb2', b, c), + writeln('Expected Atoms After Replacing b with c: [c]'), + 'get-atoms'('&kb2', Atoms3), writeln('Actual Atoms:'), writeln(Atoms3). + +% Run the test cases +run_tests :- + writeln('Running test_clear_space:'), + test_clear_space, + writeln('---'), + writeln('Running test_operations:'), + test_operations. + + +% Test case for various operations on a space +test_my_space :- + fetch_or_create_space('&KB', InstanceOfKB), + 'clear-atoms'('&KB'), + 'add-atom'(InstanceOfKB, a), + 'add-atom'(InstanceOfKB, b), + 'atom-count'(InstanceOfKB, Count1), + writeln('Should print 2: ' : Count1), + + 'get-atoms'(InstanceOfKB, Atoms1), + writeln('Should print [b, a]: ' : Atoms1), + + 'remove-atom'(InstanceOfKB, a), + 'get-atoms'(InstanceOfKB, Atoms2), + writeln('Should print [b]: ' : Atoms2), + + 'replace-atom'(InstanceOfKB, b, c), + 'get-atoms'(InstanceOfKB, Atoms3), + writeln('Should print [c]: ' : Atoms3), + + space_original_name(InstanceOfKB, OriginalName), + writeln('Should print &KB':OriginalName), + + fetch_or_create_space('&KB'), + 'add-atom'('&KB', x), + 'add-atom'('&KB', y), + 'atom-count'('&KB', Count2), + writeln('Should print 3: ' : Count2), + + 'get-atoms'('&KB', Atoms4), + writeln('Should print [c, y, x]: ' : Atoms4), + + 'remove-atom'('&KB', x), + 'get-atoms'('&KB', Atoms5), + writeln('Should print [c,y]: ' : Atoms5), + + 'replace-atom'('&KB', y, z), + 'get-atoms'(InstanceOfKB, Atoms6), + writeln('Should print [c,z]: ' : Atoms6). + + +% Test the code +test_clr_my_kb22 :- + fetch_or_create_space('&kb22'), + 'add-atom'('&kb22', a), + 'add-atom'('&kb22', b), + 'atom-count'('&kb22', Count1), writeln(Count1), + 'get-atoms'('&kb22', Atoms1), writeln(Atoms1), + 'clear-atoms'('&kb22'), + 'atom-count'('&kb22', Count2), writeln(Count2), + 'get-atoms'('&kb22', Atoms2), writeln(Atoms2). + +% Test the code +test_my_kb2:- + fetch_or_create_space('&kb1', InstanceOfKB), + \+ \+ ('add-atom'('&kb1', a)), + \+ \+ ('add-atom'('&kb1', b)), + \+ \+ ('atom-count'('&kb1', Count), writeln(Count)), + \+ \+ ('get-atoms'('&kb1', Atoms), writeln(Atoms)), + \+ \+ ('remove-atom'(InstanceOfKB, a)), + \+ \+ ('get-atoms'('&kb1', NewAtoms), writeln(NewAtoms)), + \+ \+ ('replace-atom'('&kb1', b, c)), + \+ \+ ('get-atoms'('&kb1', FinalAtoms), writeln(FinalAtoms)), + \+ \+ (space_original_name(InstanceOfKB, OriginalName), writeln(OriginalName)), + \+ \+ (fetch_or_create_space('&kb2',_)), % Creating a new space with a different name + \+ \+ ('add-atom'('&kb2', a)), + \+ \+ ('add-atom'('&kb2', b)), + \+ \+ ('atom-count'('&kb2', Count), writeln(Count)), + \+ \+ ('get-atoms'('&kb2', Atoms), writeln(Atoms)), + \+ \+ ('remove-atom'('&kb2', a)), + \+ \+ ('get-atoms'('&kb2', NewAtoms), writeln(NewAtoms)), + \+ \+ ('replace-atom'('&kb2', b, c)), + \+ \+ ('get-atoms'('&kb2', FinalAtoms), writeln(FinalAtoms)). + + + + +end_of_file. % comment this out once to get these files in your readline history +mf('./1-VSpaceTest.metta'). +mf('./2-VSpaceTest.metta'). +mf('./3-Learn-Rules.metta'). +mf('./4-VSpaceTest.metta'). +mf('./5-Learn-Flybase.metta'). +mf('./6-Learn-Flybase-Full.metta'). +mf('./8-VSpaceTest.metta'). +mf('./autoexec.metta'). +mf('./data/OBO-Metta/export/Alliance_of_Genome_Resources.metta'). +mf('./data/OBO-Metta/export/biosapiens.metta'). +mf('./data/OBO-Metta/export/chebi_fb_2023_04.metta'). +mf('./data/OBO-Metta/export/DBVAR.metta'). +mf('./data/OBO-Metta/export/doid.metta'). +mf('./data/OBO-Metta/export/flybase_controlled_vocabulary.metta'). +mf('./data/OBO-Metta/export/flybase_stock_vocabulary.metta'). +mf('./data/OBO-Metta/export/fly_anatomy.metta'). +mf('./data/OBO-Metta/export/fly_development.metta'). +mf('./data/OBO-Metta/export/gene_group_FB2023_04.metta'). +mf('./data/OBO-Metta/export/go-basic.metta'). +mf('./data/OBO-Metta/export/image.metta'). +mf('./data/OBO-Metta/export/psi-mi.metta'). +mf('./data/OBO-Metta/export/slice.chebi.metta'). +mf('./data/OBO-Metta/export/so-simple.metta'). +mf('./data/OBO-Metta/export/so.metta'). +mf('./data/OBO-Metta/export/SOFA.metta'). +mf('./examples/compat/common/BelieveMe.metta'). +mf('./examples/compat/common/EqualityType.metta'). +mf('./examples/compat/common/EqualityTypeTest.metta'). +mf('./examples/compat/common/formula/DeductionFormula.metta'). +mf('./examples/compat/common/formula/DeductionFormulaTest.metta'). +mf('./examples/compat/common/formula/ImplicationDirectIntroductionFormula.metta'). +mf('./examples/compat/common/formula/ModusPonensFormula.metta'). +mf('./examples/compat/common/In.metta'). +mf('./examples/compat/common/InTest.metta'). +mf('./examples/compat/common/List.metta'). +mf('./examples/compat/common/ListTest.metta'). +mf('./examples/compat/common/Maybe.metta'). +mf('./examples/compat/common/MaybeTest.metta'). +mf('./examples/compat/common/Num.metta'). +mf('./examples/compat/common/NumTest.metta'). +mf('./examples/compat/common/OrderedSet.metta'). +mf('./examples/compat/common/OrderedSetTest.metta'). +mf('./examples/compat/common/Record.metta'). +mf('./examples/compat/common/truthvalue/EvidentialTruthValue.metta'). +mf('./examples/compat/common/truthvalue/EvidentialTruthValueTest.metta'). +mf('./examples/compat/common/truthvalue/MeasEq.metta'). +mf('./examples/compat/common/truthvalue/TemporalTruthValue.metta'). +mf('./examples/compat/common/truthvalue/TruthValue.metta'). +mf('./examples/compat/common/truthvalue/TruthValueTest.metta'). +mf('./examples/compat/dependent-types/DeductionDTL.metta'). +mf('./examples/compat/dependent-types/DeductionDTLTest.metta'). +mf('./examples/compat/dependent-types/DeductionImplicationDirectIntroductionDTLTest.metta'). +mf('./examples/compat/dependent-types/ImplicationDirectIntroductionDTL.metta'). +mf('./examples/compat/dependent-types/ImplicationDirectIntroductionDTLTest.metta'). +mf('./examples/compat/dependent-types/ModusPonensDTL.metta'). +mf('./examples/compat/dependent-types/ModusPonensDTLTest.metta'). +mf('./examples/compat/entail/DeductionEntail.metta'). +mf('./examples/compat/entail/DeductionEntailTest.metta'). +mf('./examples/compat/entail/ImplicationDirectIntroductionEntail.metta'). +mf('./examples/compat/entail/ImplicationDirectIntroductionEntailTest.metta'). +mf('./examples/compat/equal/DeductionEqual.metta'). +mf('./examples/compat/equal/DeductionEqualTest.metta'). +mf('./examples/compat/equal/ImplicationDirectIntroductionEqual.metta'). +mf('./examples/compat/equal/ImplicationDirectIntroductionEqualTest.metta'). +mf('./examples/compat/match/DeductionImplicationDirectIntroductionMatchTest.metta'). +mf('./examples/compat/match/DeductionMatch.metta'). +mf('./examples/compat/match/DeductionMatchTest.metta'). +mf('./examples/compat/match/ImplicationDirectIntroductionMatch.metta'). +mf('./examples/compat/match/ImplicationDirectIntroductionMatchTest.metta'). +mf('./examples/compat/prob-dep-types/inf_order_probs.metta'). +mf('./examples/compat/prob-dep-types/prob_dep_types.metta'). +mf('./examples/compat/recursion-schemes/src/base.metta'). +mf('./examples/compat/recursion-schemes/src/examples/benchmark.metta'). +mf('./examples/compat/recursion-schemes/src/examples/expression.metta'). +mf('./examples/compat/recursion-schemes/src/schemes.metta'). +mf('./examples/compat/synthesis/experiments/non-determinism.metta'). +mf('./examples/compat/synthesis/experiments/self-contained-synthesize.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-case-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-case.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-let-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-let.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-superpose.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-type-checking.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-unify-test.metta'). +mf('./examples/compat/synthesis/experiments/synthesize-via-unify.metta'). +mf('./examples/compat/synthesis/experiments/unify-via-case.metta'). +mf('./examples/compat/synthesis/experiments/unify-via-let.metta'). +mf('./examples/compat/synthesis/Synthesize.metta'). +mf('./examples/compat/synthesis/SynthesizeTest.metta'). +mf('./examples/compat/synthesis/Unify.metta'). +mf('./examples/compat/synthesis/UnifyTest.metta'). +mf('./examples/compat/test_scripts/a1_symbols.metta'). +mf('./examples/compat/test_scripts/a2_opencoggy.metta'). +mf('./examples/compat/test_scripts/a3_twoside.metta'). +mf('./examples/compat/test_scripts/b0_chaining_prelim.metta'). +mf('./examples/compat/test_scripts/b1_equal_chain.metta'). +mf('./examples/compat/test_scripts/b2_backchain.metta'). +mf('./examples/compat/test_scripts/b3_direct.metta'). +mf('./examples/compat/test_scripts/b4_nondeterm.metta'). +mf('./examples/compat/test_scripts/b5_types_prelim.metta'). +mf('./examples/compat/test_scripts/c1_grounded_basic.metta'). +mf('./examples/compat/test_scripts/c2_spaces.metta'). +mf('./examples/compat/test_scripts/c2_spaces_kb.metta'). +mf('./examples/compat/test_scripts/c3_pln_stv.metta'). +mf('./examples/compat/test_scripts/d1_gadt.metta'). +mf('./examples/compat/test_scripts/d2_higherfunc.metta'). +mf('./examples/compat/test_scripts/d3_deptypes.metta'). +mf('./examples/compat/test_scripts/d4_type_prop.metta'). +mf('./examples/compat/test_scripts/d5_auto_types.metta'). +mf('./examples/compat/test_scripts/e1_kb_write.metta'). +mf('./examples/compat/test_scripts/e2_states.metta'). +mf('./examples/compat/test_scripts/e3_match_states.metta'). +mf('./examples/compat/test_scripts/f1_imports.metta'). +mf('./examples/compat/test_scripts/f1_moduleA.metta'). +mf('./examples/compat/test_scripts/f1_moduleB.metta'). +mf('./examples/compat/test_scripts/f1_moduleC.metta'). +mf('./examples/compat/test_scripts/_e2_states_dia.metta'). +mf('./examples/fibo.metta'). +mf('./examples/fwgc.metta'). +mf('./examples/httpclient.metta'). +mf('./examples/NARS.metta'). +mf('./examples/NARS_listing.metta'). +mf('./examples/RUN_minnars.metta'). +mf('./examples/RUN_tests0.metta'). +mf('./examples/RUN_tests1.metta'). +mf('./examples/RUN_tests2.metta'). +mf('./examples/RUN_tests3.metta'). +mf('./examples/send-more.metta'). +mf('./examples/talk80.metta'). +mf('./examples/VRUN_tests0.metta'). +mf('./examples/VRUN_tests1.metta'). +mf('./examples/VRUN_tests2.metta'). +mf('./examples/VRUN_tests3.metta'). +mf('./metta_vspace/nm_test.metta'). +mf('./metta_vspace/r.metta'). +mf('./metta_vspace/test_nspace.metta'). +:- forall(mf(H),add_history1(load_metta(H))). +%:- load_metta + + + + + +end_of_file. + + + +parsing(String, Expr) :- string(String),!,string_codes(String,Codes),phrase(expressions(Expr), Codes). +parsing(String, Expr) :- phrase(expressions(Expr), String). + +expressions([E|Es]) --> + ws, expression(E), ws, + !, % single solution: longest input match + expressions(Es). +expressions([]) --> []. + +% ws --> ";",until_eol, +ws --> [W], { code_type(W, space) }, ws. +ws --> []. + +% A number N is represented as n(N), a symbol S as s(S). + +expression(s(A)) --> symbol(Cs), { atom_codes(A, Cs) }. +expression(n(N)) --> number(Cs), { number_codes(N, Cs) }. +expression(List) --> [L],{is_bracket_lr(L,R)},expressions(List), [R]. +expression([s(quote),Q]) --> "'", expression(Q). + +number([D|Ds]) --> digit(D), number(Ds). +number([D]) --> digit(D). + +digit(D) --> [D], { code_type(D, digit) }. + +symbol([A|As]) --> + [A], + { is_ok_symbolchar(A) }, + symbolr(As). + +symbolr([A|As]) --> + [A], + { is_ok_symbolchar(A) ; code_type(A, alnum) }, + symbolr(As). +symbolr([]) --> []. + +is_bracket_lr(L,R):- member(LR,["()","{}","[]","\"\""]), nth0(0,LR,L),nth0(1,LR,R). +is_ok_symbolchar(A):- \+ code_type(A, space), \+ code_type(A, white), \+ is_bracket_lr(A,_), \+ is_bracket_lr(_,A). + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + Interpretation + -------------- + + Declaratively, execution of a Lisp form is a relation between the + (function and variable) binding environment before its execution + and the environment after its execution. A Lisp program is a + sequence of Lisp forms, and its result is the sequence of their + results. The environment is represented as a pair of association + lists Fs-Vs, associating function names with argument names and + bodies, and variables with values. DCGs are used to implicitly + thread the environment state through. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +codelist_to_forms_i(AsciiCodesList,FormsOut):- + parsing(AsciiCodesList, Forms0), + compile_all(Forms0, FormsOut),!. + +run(Program, Values) :- + parsing(Program, Forms0), + empty_assoc(E), + compile_all(Forms0, Forms), + writeq(seeingFormas(Forms)),nl, + phrase(eval_all(Forms, Values0), [E-E], _), + maplist(unfunc, Values0, Values). + +unfunc(s(S), S). +unfunc(t, t). +unfunc(n(N), N). +unfunc([], []). +unfunc([Q0|Qs0], [Q|Qs]) :- unfunc(Q0, Q), unfunc(Qs0, Qs). + +fold([], _, V, n(V)). +fold([n(F)|Fs], Op, V0, V) :- E =.. [Op,V0,F], V1 is E, fold(Fs, Op, V1, V). + +compile_all(Fs0, Fs) :- maplist(compile, Fs0, Fs). + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + compile/2 marks (with 'user/1') calls of user-defined functions. + This eliminates an otherwise defaulty representation of function + calls and thus allows for first argument indexing in eval//3. +- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ + +compile(F0, F) :- + ( F0 = n(_) -> F = F0 + ; F0 = s(t) -> F = t + ; F0 = s(nil) -> F = [] + ; F0 = s(_) -> F = F0 + ; F0 = [] -> F = [] + ; F0 = [s(quote),Arg] -> F = [quote,Arg] + ; F0 = [s(setq),s(Var),Val0] -> compile(Val0, Val), F = [setq,Var,Val] + ; F0 = [s(Op)|Args0], + memberchk(Op, [+,-,*,equal,if,>,<,=,progn,eval,list,car,cons, + cdr,while,not]) -> + compile_all(Args0, Args), + F = [Op|Args] + ; F0 = [s(defun),s(Name),Args0|Body0] -> + compile_all(Body0, Body), + maplist(arg(1), Args0, Args), + F = [defun,Name,Args|Body] + ; F0 = [s(Op)|Args0] -> compile_all(Args0, Args), F = [user(Op)|Args] + ). + +eval_all([], []) --> []. +eval_all([A|As], [B|Bs]) --> eval(A, B), eval_all(As, Bs). + +eval(n(N), n(N)) --> []. +eval(t, t) --> []. +eval([], []) --> []. +eval(s(A), V), [Fs-Vs] --> [Fs-Vs], { get_assoc(A, Vs, V) }. +eval([L|Ls], Value) --> eval(L, Ls, Value). + +eval(quote, [Q], Q) --> []. +eval(+, As0, V) --> eval_all(As0, As), { fold(As, +, 0, V) }. +eval(-, As0, V) --> eval_all(As0, [n(V0)|Vs0]), { fold(Vs0, -, V0, V) }. +eval(*, As0, V) --> eval_all(As0, Vs), { fold(Vs, *, 1, V) }. +eval(car, [A], C) --> eval(A, V), { V == [] -> C = [] ; V = [C|_] }. +eval(cdr, [A], C) --> eval(A, V), { V == [] -> C = [] ; V = [_|C] }. +eval(list, Ls0, Ls) --> eval_all(Ls0, Ls). +eval(not, [A], V) --> eval(A, V0), goal_truth(V0=[], V). +eval(>, [A,B], V) --> eval(A, n(V1)), eval(B, n(V2)), goal_truth(V1>V2, V). +eval(<, [A,B], V) --> eval(>, [B,A], V). +eval(=, [A,B], V) --> eval(A, n(V1)), eval(B, n(V2)), goal_truth(V1=:=V2, V). +eval(progn, Ps, V) --> eval_all(Ps, Vs), { last(Vs, V) }. +eval(eval, [A], V) --> eval(A, F0), { compile(F0, F1) }, eval(F1, V). +eval(equal, [A,B], V) --> eval(A, V1), eval(B, V2), goal_truth(V1=V2, V). +eval(cons, [A,B], [V0|V1]) --> eval(A, V0), eval(B, V1). +eval(while, [Cond|Bs], []) --> + ( eval(Cond, []) -> [] + ; eval_all(Bs, _), + eval(while, [Cond|Bs], _) + ). +eval(defun, [F,As|Body], s(F)), [Fs-Vs0] --> + [Fs0-Vs0], + { put_assoc(F, Fs0, As-Body, Fs) }. +eval(user(F), As0, V), [Fs-Vs] --> + eval_all(As0, As1), + [Fs-Vs], + { empty_assoc(E), + get_assoc(F, Fs, As-Body), + bind_arguments(As, As1, E, Bindings), + phrase(eval_all(Body, Results), [Fs-Bindings], _), + last(Results, V) }. +eval('bind!', [Var,V0], V), [Fs0-Vs] --> + eval(V0, V), + [Fs0-Vs0], + { put_assoc(Var, Vs0, V, Vs) }. +eval(setq, [Var,V0], V), [Fs0-Vs] --> + eval(V0, V), + [Fs0-Vs0], + { put_assoc(Var, Vs0, V, Vs) }. +eval(if, [Cond,Then|Else], Value) --> + ( eval(Cond, []) -> eval_all(Else, Values), { last(Values, Value) } + ; eval(Then, Value) + ). + +:- meta_predicate goal_truth(0,*,//,//). +goal_truth(Goal, T) --> { Goal -> T = t ; T = [] }. + +bind_arguments([], [], Bs, Bs). +bind_arguments([A|As], [V|Vs], Bs0, Bs) :- + put_assoc(A, Bs0, V, Bs1), + bind_arguments(As, Vs, Bs1, Bs). + +run(S):-'format'('~n~s~n',[S]),run(S,V),writeq(V). + +%if_script_file_time(X):-if_startup_script(time(X)). +if_script_file_time(_):-!. +%if_script_file_time(X):- nop(time(X)). + +% Append: + :- if_script_file_time(run(" + (defun append (x y) + (if x + (cons (car x) (append (cdr x) y)) + y)) + + (append '(a b) '(3 4 5))")). + + %@ V = [append, [a, b, 3, 4, 5]]. + + +% Fibonacci, naive version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) + 0 + (if (= 1 n) + 1 + (+ (fib (- n 1)) (fib (- n 2)))))) + (fib 24)")). + + %@ % 14,255,802 inferences, 3.71 CPU in 3.87 seconds (96% CPU, 3842534 Lips) + %@ V = [fib, 46368]. + + +% Fibonacci, accumulating version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) 0 (fib1 0 1 1 n))) + + (defun fib1 (f1 f2 i to) + (if (= i to) + f2 + (fib1 f2 (+ f1 f2) (+ i 1) to))) + + (fib 250)")). + + %@ % 39,882 inferences, 0.010 CPU in 0.013 seconds (80% CPU, 3988200 Lips) + %@ V = [fib, fib1, 7896325826131730509282738943634332893686268675876375]. + + +% Fibonacci, iterative version: + :- if_script_file_time(run(" + (defun fib (n) + (setq f (cons 0 1)) + (setq i 0) + (while (< i n) + (setq f (cons (cdr f) (+ (car f) (cdr f)))) + (setq i (+ i 1))) + (car f)) + + (fib 350)")). + + %@ % 30,794 inferences, 0.002 CPU in 0.002 seconds (100% CPU, 12831368 Lips) + %@ V = [fib, 6254449428820551641549772190170184190608177514674331726439961915653414425]. + + + +% Fibonacci, accumulating version: + :- if_script_file_time(run(" + (defun fib (n) + (if (= 0 n) 0 (fib1 0 1 1 n))) + + (defun fib1 (f1 f2 i to) + (if (= i to) + f2 + (fib1 f2 (+ f1 f2) (+ i 1) to))) + + (fib 350)")). + + %@ % 44,595 inferences, 0.003 CPU in 0.003 seconds (100% CPU, 14526532 Lips) + %@ V = [fib, fib1, 6254449428820551641549772190170184190608177514674331726439961915653414425]. + + +% Higher-order programming and eval: + :- if_script_file_time(run(" + (defun map (f xs) + (if xs + (cons (eval (list f (car xs))) (map f (cdr xs))) + ())) + + (defun plus1 (x) (+ 1 x)) + + (map 'plus1 '(1 2 3)) + " + )). + + %@ V = [map, plus1, [2, 3, 4]]. + +%:- ensure_loaded(metta_reader). + + + +#[test] +fn test_case_operation() { + let metta = new_metta_rust(); + let result = metta.run(&mut SExprParser::new(" + ")); + + let expected = metta.run(&mut SExprParser::new(" + ! OK + ! 7 + ! (superpose (OK-3 OK-4)) + ! (superpose (3 4 5)) + ! (superpose ()) + ")); + assert_eq!(result, expected); + + let metta = new_metta_rust(); + let result = metta.run(&mut SExprParser::new(" + (Rel-P A B) + (Rel-Q A C) + + ; cases can be used for deconstruction + !(case (match &self ($rel A $x) ($rel $x)) + (((Rel-P $y) (P $y)) + ((Rel-Q $y) (Q $y)))) + + ; %void% can be used to capture empty results + !(case (match &self ($rel B $x) ($rel $x)) + (((Rel-P $y) (P $y)) + ((Rel-Q $y) (Q $y)) + (%void% no-match))) + + ; a functional example + (= (maybe-inc $x) + (case $x + (((Just $v) (Just (+ 1 $v))) + (Nothing Nothing))) + ) + !(maybe-inc Nothing) + !(maybe-inc (Just 2)) + ")); + let expected = metta.run(&mut SExprParser::new(" + ! (superpose ((Q C) (P B))) + ! no-match + ! Nothing + ! (Just 3) + ")); + assert_eq_metta_results!(result, expected); +} + + + +use hyperon::metta::text::*; +use hyperon::metta::runner::new_metta_rust; + +#[test] +fn test_reduce_higher_order() { + let program = " + ; Curried plus + (: plus (-> Number (-> Number Number))) + (= ((plus $x) $y) (+ $x $y)) + ; Define inc as partial evaluation of plus + (: inc (-> (-> Number Number))) + (= (inc) (plus 1)) + + !(assertEqualToResult ((inc) 2) (3)) + "; + let metta = new_metta_rust(); + + let result = metta.run(&mut SExprParser::new(program)); + + assert_eq!(result, Ok(vec![vec![]])); +} + + + +use hyperon::*; +use hyperon::space::grounding::GroundingSpace; + +#[test] +fn test_custom_match_with_space() { + let mut main_space = GroundingSpace::new(); + let mut inserted_space = GroundingSpace::new(); + inserted_space.add(expr!("implies" ("B" x) ("C" x))); + inserted_space.add(expr!("implies" ("A" x) ("B" x))); + inserted_space.add(expr!("A" "Sam")); + main_space.add(Atom::gnd(inserted_space)); + let result = main_space.query(&expr!("," ("implies" ("B" x) z) ("implies" ("A" x) y) ("A" x))); + assert_eq!(result.len(), 1); + assert_eq!(result[0].resolve(&VariableAtom::new("y")), Some(expr!("B" "Sam"))); + assert_eq!(result[0].resolve(&VariableAtom::new("z")), Some(expr!("C" "Sam"))); +} + + + +use hyperon::*; +use hyperon::common::*; +use hyperon::metta::interpreter::*; +use hyperon::space::grounding::GroundingSpace; + +#[test] +fn test_types_in_metta() { + let mut space = GroundingSpace::new(); + space.add(expr!("=" ("check" (":" n "Int")) ({IS_INT} n))); + space.add(expr!("=" ("check" (":" n "Nat")) ({AND} ("check" (":" n "Int")) ({GT} n {0})))); + space.add(expr!("=" ("if" {true} then else) then)); + space.add(expr!("=" ("if" {false} then else) else)); + space.add(expr!(":" "if" ("->" "bool" "Atom" "Atom" "Atom"))); + space.add(expr!("=" ("fac" n) ("if" ("check" (":" n "Nat")) ("if" ({EQ} n {1}) {1} ({MUL} n ("fac" ({SUB} n {1})))) ({ERR})))); + + assert_eq!(interpret(&space, &expr!("check" (":" {3} "Int"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {(-3)} "Int"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {3} "Nat"))), Ok(vec![expr!({true})])); + assert_eq!(interpret(&space, &expr!("check" (":" {(-3)} "Nat"))), Ok(vec![expr!({false})])); + assert_eq!(interpret(&space, &expr!("if" ("check" (":" {(3)} "Nat")) "ok" "nok")), Ok(vec![expr!("ok")])); + assert_eq!(interpret(&space, &expr!("if" ("check" (":" {(-3)} "Nat")) "ok" "nok")), Ok(vec![expr!("nok")])); + assert_eq!(interpret(&space, &expr!("fac" {1})), Ok(vec![expr!({1})])); + assert_eq!(interpret(&space, &expr!("fac" {3})), Ok(vec![expr!({6})])); +} + + + + + + + + + #[test] + fn test_match_expression_with_variables() { + let mut space = GroundingSpace::new(); + space.add(expr!("+" "A" ("*" "B" "C"))); + assert_eq!(space.query(&expr!("+" a ("*" b c))), + bind_set![{a: expr!("A"), b: expr!("B"), c: expr!("C") }]); + } + + #[test] + fn test_match_different_value_for_variable() { + let mut space = GroundingSpace::new(); + space.add(expr!("+" "A" ("*" "B" "C"))); + assert_eq!(space.query(&expr!("+" a ("*" a c))), BindingsSet::empty()); + } + + #[test] + fn test_match_query_variable_has_priority() { + let mut space = GroundingSpace::new(); + space.add(expr!("equals" x x)); + + let result = space.query(&expr!("equals" y z)); + assert_eq!(result, bind_set![{ y: expr!(z) }]); + } + + #[test] + fn test_match_query_variable_via_data_variable() { + let mut space = GroundingSpace::new(); + space.add(expr!(x x)); + assert_eq!(space.query(&expr!(y (z))), bind_set![{y: expr!((z))}]); + } + + #[test] + fn test_match_if_then_with_x() { + let mut space = GroundingSpace::new(); + space.add(expr!("=" ("if" "True" then) then)); + assert_eq!(space.query(&expr!("=" ("if" "True" "42") X)), + bind_set![{X: expr!("42")}]); + } + + #[test] + fn test_match_combined_query() { + let mut space = GroundingSpace::new(); + space.add(expr!("posesses" "Sam" "baloon")); + space.add(expr!("likes" "Sam" ("blue" "stuff"))); + space.add(expr!("has-color" "baloon" "blue")); + + let result = space.query(&expr!("," ("posesses" "Sam" object) + ("likes" "Sam" (color "stuff")) + ("has-color" object color))); + assert_eq!(result, bind_set![{object: expr!("baloon"), color: expr!("blue")}]); + } + diff --git a/metta_vspace/pyswip-want/metta_toplevel.pl b/metta_vspace/pyswip-want/metta_toplevel.pl new file mode 100755 index 00000000..82b52d6e --- /dev/null +++ b/metta_vspace/pyswip-want/metta_toplevel.pl @@ -0,0 +1,2155 @@ +/* Part of SWI-Prolog + + Author: Jan Wielemaker + E-mail: J.Wielemaker@vu.nl + WWW: http://www.swi-prolog.org + Copyright (c) 1985-2021, University of Amsterdam + VU University Amsterdam + SWI-Prolog Solutions b.v. + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in + the documentation and/or other materials provided with the + distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. +*/ +/* +:- module('metta_toplevel', + [ '$initialise'/0, % start Prolog + 'metta_toplevel'/0, % Prolog top-level (re-entrant) + '$compile'/0, % `-c' toplevel + '$config'/0, % --dump-runtime-variables toplevel + initialize/0, % Run program '$initialization' + version/0, % Write initial banner + version/1, % Add message to the banner + prolog/0, % user toplevel predicate + 'metta_query_loop'/0, % toplevel predicate + 'metta_execute_query'/3, % +Query, +Bindings, -Truth + residual_goals/1, % +Callable + ('$initialization')/1, % '$initialization' goal (directive) + '$thread_init'/0, % initialise thread + (thread_initialization)/1 % thread '$initialization' goal + ]). +*/ + + /******************************* + * VERSION BANNER * + *******************************/ + +:- dynamic + prolog:version_msg/1. + +%! version is det. +% +% Print the Prolog banner message and messages registered using +% version/1. + +version :- + print_message(banner, welcome). + +%! version(+Message) is det. +% +% Add message to version/0 +/* +:- multifile + system:term_expansion/2. + +system:term_expansion((:- version(Message)), + prolog:version_msg(Message)). + +version(Message) :- + ( prolog:version_msg(Message) + -> true + ; assertz(prolog:version_msg(Message)) + ). +*/ + + /******************************** + * INITIALISATION * + *********************************/ + +%! load_init_file is det. +% +% Load the user customization file. This can be done using ``swipl -f +% file`` or simply using ``swipl``. In the first case we search the +% file both directly and over the alias `user_app_config`. In the +% latter case we only use the alias. + +load_init_file :- + '$cmd_option_val'(init_file, OsFile), + !, + prolog_to_os_filename(File, OsFile), + load_init_file(File, explicit). +load_init_file :- + load_init_file('init.pl', implicit). + +%! loaded_init_file(?Base, ?AbsFile) +% +% Used by prolog_load_context/2 to confirm we are loading a script. + +:- dynamic + loaded_init_file/2. % already loaded init files + +load_init_file(none, _) :- !. +load_init_file(Base, _) :- + loaded_init_file(Base, _), + !. +load_init_file(InitFile, explicit) :- + exists_file(InitFile), + !, + ensure_loaded(user:InitFile). +load_init_file(Base, _) :- + absolute_file_name(user_app_config(Base), InitFile, + [ access(read), + file_errors(fail) + ]), + asserta(loaded_init_file(Base, InitFile)), + load_files(user:InitFile, + [ scope_settings(false) + ]). +load_init_file('init.pl', implicit) :- + ( current_prolog_flag(windows, true), + absolute_file_name(user_profile('swipl.ini'), InitFile, + [ access(read), + file_errors(fail) + ]) + ; expand_file_name('~/.swiplrc', [InitFile]), + exists_file(InitFile) + ), + !, + print_message(warning, backcomp(init_file_moved(InitFile))). +load_init_file(_, _). + +'$load_system_init_file' :- + loaded_init_file(system, _), + !. +'$load_system_init_file' :- + '$cmd_option_val'(system_init_file, Base), + Base \== none, + current_prolog_flag(home, Home), + file_name_extension(Base, rc, Name), + atomic_list_concat([Home, '/', Name], File), + absolute_file_name(File, Path, + [ file_type(prolog), + access(read), + file_errors(fail) + ]), + asserta(loaded_init_file(system, Path)), + load_files(user:Path, + [ silent(true), + scope_settings(false) + ]), + !. +'$load_system_init_file'. + +'$load_script_file' :- + loaded_init_file(script, _), + !. +'$load_script_file' :- + '$cmd_option_val'(script_file, OsFiles), + load_script_files(OsFiles). + +load_script_files([]). +load_script_files([OsFile|More]) :- + prolog_to_os_filename(File, OsFile), + ( absolute_file_name(File, Path, + [ file_type(prolog), + access(read), + file_errors(fail) + ]) + -> asserta(loaded_init_file(script, Path)), + load_files(user:Path, []), + load_files(More) + ; throw(error(existence_error(script_file, File), _)) + ). + + + /******************************* + * AT_INITIALISATION * + *******************************/ + +:- meta_predicate + '$initialization'(0). + +:- '$iso'(('$initialization')/1). + +%! '$initialization'(:Goal) +% +% Runs Goal after loading the file in which this directive +% appears as well as after restoring a saved state. +% +% @see '$initialization'/2 +/* +'$initialization'(Goal) :- + Goal = _:G, + prolog:initialize_now(G, Use), + !, + print_message(warning, initialize_now(G, Use)), + initialization(Goal, now). +'$initialization'(Goal) :- + initialization(Goal, after_load). + +:- multifile + prolog:initialize_now/2, + prolog:message//1. + +prolog:initialize_now(load_foreign_library(_), + 'use :- use_foreign_library/1 instead'). +prolog:initialize_now(load_foreign_library(_,_), + 'use :- use_foreign_library/2 instead'). + +prolog:message(initialize_now(Goal, Use)) --> + [ 'Initialization goal ~p will be executed'-[Goal],nl, + 'immediately for backward compatibility reasons', nl, + '~w'-[Use] + ]. + +'$run_initialization' :- + '$run_initialization'(_, []), + '$thread_init'. + +%! initialize +% +% Run goals registered with `:- '$initialization'(Goal, program).`. Stop +% with an exception if a goal fails or raises an exception. + +initialize :- + forall('$init_goal'(when(program), Goal, Ctx), + run_initialize(Goal, Ctx)). + +run_initialize(Goal, Ctx) :- + ( catch(Goal, E, true), + ( var(E) + -> true + ; throw(error(initialization_error(E, Goal, Ctx), _)) + ) + ; throw(error(initialization_error(failed, Goal, Ctx), _)) + ). + +*/ + /******************************* + * THREAD INITIALIZATION * + *******************************/ +/* +:- meta_predicate + thread_initialization(0). +:- dynamic + '$at_thread_initialization'/1. + +%! thread_initialization(:Goal) +% +% Run Goal now and everytime a new thread is created. + +thread_initialization(Goal) :- + assert('$at_thread_initialization'(Goal)), + call(Goal), + !. + +'$thread_init' :- + ( '$at_thread_initialization'(Goal), + ( call(Goal) + -> fail + ; fail + ) + ; true + ). +*/ + + /******************************* + * FILE SEARCH PATH (-p) * + *******************************/ +/* +%! '$set_file_search_paths' is det. +% +% Process -p PathSpec options. + +'$set_file_search_paths' :- + '$cmd_option_val'(search_paths, Paths), + ( '$member'(Path, Paths), + atom_chars(Path, Chars), + ( phrase('$search_path'(Name, Aliases), Chars) + -> '$reverse'(Aliases, Aliases1), + forall('$member'(Alias, Aliases1), + asserta(user:file_search_path(Name, Alias))) + ; print_message(error, commandline_arg_type(p, Path)) + ), + fail ; true + ). + +'$search_path'(Name, Aliases) --> + '$string'(NameChars), + [=], + !, + {atom_chars(Name, NameChars)}, + '$search_aliases'(Aliases). + +'$search_aliases'([Alias|More]) --> + '$string'(AliasChars), + path_sep, + !, + { '$make_alias'(AliasChars, Alias) }, + '$search_aliases'(More). +'$search_aliases'([Alias]) --> + '$string'(AliasChars), + '$eos', + !, + { '$make_alias'(AliasChars, Alias) }. + +path_sep --> + { current_prolog_flag(windows, true) + }, + !, + [;]. +path_sep --> + [:]. + +'$string'([]) --> []. +'$string'([H|T]) --> [H], '$string'(T). + +'$eos'([], []). + +'$make_alias'(Chars, Alias) :- + catch(term_to_atom(Alias, Chars), _, fail), + ( atom(Alias) + ; functor(Alias, F, 1), + F \== / + ), + !. +'$make_alias'(Chars, Alias) :- + atom_chars(Alias, Chars). + +*/ + /******************************* + * LOADING ASSIOCIATED FILES * + *******************************/ + +%! argv_files(-Files) is det. +% +% Update the Prolog flag `argv`, extracting the leading script files. +/* +argv_files(Files) :- + current_prolog_flag(argv, Argv), + no_option_files(Argv, Argv1, Files, ScriptArgs), + ( ( ScriptArgs == true + ; Argv1 == [] + ) + -> ( Argv1 \== Argv + -> set_prolog_flag(argv, Argv1) + ; true + ) + ; '$usage', + halt(1) + ). + +no_option_files([--|Argv], Argv, [], true) :- !. +no_option_files([Opt|_], _, _, ScriptArgs) :- + ScriptArgs \== true, + sub_atom(Opt, 0, _, _, '-'), + !, + '$usage', + halt(1). +no_option_files([OsFile|Argv0], Argv, [File|T], ScriptArgs) :- + file_name_extension(_, Ext, OsFile), + user:prolog_file_type(Ext, prolog), + !, + ScriptArgs = true, + prolog_to_os_filename(File, OsFile), + no_option_files(Argv0, Argv, T, ScriptArgs). +no_option_files([OsScript|Argv], Argv, [Script], ScriptArgs) :- + ScriptArgs \== true, + !, + prolog_to_os_filename(Script, OsScript), + ( exists_file(Script) + -> true + ; '$existence_error'(file, Script) + ), + ScriptArgs = true. +no_option_files(Argv, Argv, [], _). + +clean_argv :- + ( current_prolog_flag(argv, [--|Argv]) + -> set_prolog_flag(argv, Argv) + ; true + ). + +%! associated_files(-Files) +% +% If SWI-Prolog is started as ., where is +% the extension registered for associated files, set the Prolog +% flag associated_file, switch to the directory holding the file +% and -if possible- adjust the window title. + +associated_files([]) :- + current_prolog_flag(saved_program_class, runtime), + !, + clean_argv. +associated_files(Files) :- + '$set_prolog_file_extension', + argv_files(Files), + ( Files = [File|_] + -> absolute_file_name(File, AbsFile), + set_prolog_flag(associated_file, AbsFile), + set_working_directory(File), + set_window_title(Files) + ; true + ). + +%! set_working_directory(+File) +% +% When opening as a GUI application, e.g., by opening a file from +% the Finder/Explorer/..., we typically want to change working +% directory to the location of the primary file. We currently +% detect that we are a GUI app by the Prolog flag =console_menu=, +% which is set by swipl-win[.exe]. + +set_working_directory(File) :- + current_prolog_flag(console_menu, true), + access_file(File, read), + !, + file_directory_name(File, Dir), + working_directory(_, Dir). +set_working_directory(_). + +set_window_title([File|More]) :- + current_predicate(system:window_title/2), + !, + ( More == [] + -> Extra = [] + ; Extra = ['...'] + ), + atomic_list_concat(['SWI-Prolog --', File | Extra], ' ', Title), + system:window_title(_, Title). +set_window_title(_). + + +%! start_pldoc +% +% If the option =|--pldoc[=port]|= is given, load the PlDoc +% system. + +start_pldoc :- + '$cmd_option_val'(pldoc_server, Server), + ( Server == '' + -> call((doc_server(_), doc_browser)) + ; catch(atom_number(Server, Port), _, fail) + -> call(doc_server(Port)) + ; print_message(error, option_usage(pldoc)), + halt(1) + ). +start_pldoc. + + +%! load_associated_files(+Files) +% +% Load Prolog files specified from the commandline. + +load_associated_files(Files) :- + ( '$member'(File, Files), + load_files(user:File, [expand(false)]), + fail + ; true + ). + +hkey('HKEY_CURRENT_USER/Software/SWI/Prolog'). +hkey('HKEY_LOCAL_MACHINE/Software/SWI/Prolog'). + +'$set_prolog_file_extension' :- + current_prolog_flag(windows, true), + hkey(Key), + catch(win_registry_get_value(Key, fileExtension, Ext0), + _, fail), + !, + ( atom_concat('.', Ext, Ext0) + -> true + ; Ext = Ext0 + ), + ( user:prolog_file_type(Ext, prolog) + -> true + ; asserta(user:prolog_file_type(Ext, prolog)) + ). +'$set_prolog_file_extension'. + +*/ + /******************************** + * TOPLEVEL GOALS * + *********************************/ +/* +%! '$initialise' is semidet. +% +% Called from PL_initialise() to do the Prolog part of the +% '$initialization'. If an exception occurs, this is printed and +% '$initialise' fails. + +'$initialise' :- + catch(initialise_prolog, E, initialise_error(E)). + +initialise_error('$aborted') :- !. +initialise_error(E) :- + print_message(error, initialization_exception(E)), + fail. +*/ +initialise_prolog :- + '$clean_history', + apple_setup_app, + '$run_initialization', + '$load_system_init_file', + set_toplevel, + '$set_file_search_paths', + init_debug_flags, + start_pldoc, + opt_attach_packs, + load_init_file, + catch(setup_colors, E, print_message(warning, E)), + associated_files(Files), + '$load_script_file', + load_associated_files(Files), + '$cmd_option_val'(goals, Goals), + ( Goals == [], + \+ '$init_goal'(when(_), _, _) + -> version % default interactive run + ; run_init_goals(Goals), + ( load_only + -> version + ; run_program_init, + run_main_init + ) + ). + +:- if(current_prolog_flag(apple,true)). +apple_set_working_directory :- + ( expand_file_name('~', [Dir]), + exists_directory(Dir) + -> working_directory(_, Dir) + ; true + ). + +apple_set_locale :- + ( getenv('LC_CTYPE', 'UTF-8'), + apple_current_locale_identifier(LocaleID), + atom_concat(LocaleID, '.UTF-8', Locale), + catch(setlocale(ctype, _Old, Locale), _, fail) + -> setenv('LANG', Locale), + unsetenv('LC_CTYPE') + ; true + ). + +apple_setup_app :- + current_prolog_flag(apple, true), + current_prolog_flag(console_menu, true), % SWI-Prolog.app on MacOS + apple_set_working_directory, + apple_set_locale. +:- endif. +apple_setup_app. + +opt_attach_packs :- + current_prolog_flag(packs, true), + !, + attach_packs. +opt_attach_packs. + +set_toplevel :- + '$cmd_option_val'(toplevel, TopLevelAtom), + catch(term_to_atom(TopLevel, TopLevelAtom), E, + (print_message(error, E), + halt(1))), + create_prolog_flag(toplevel_goal, TopLevel, [type(term)]). + +load_only :- + current_prolog_flag(os_argv, OSArgv), + memberchk('-l', OSArgv), + current_prolog_flag(argv, Argv), + \+ memberchk('-l', Argv). + +%! run_init_goals(+Goals) is det. +% +% Run registered '$initialization' goals on order. If a goal fails, +% execution is halted. + +run_init_goals([]). +run_init_goals([H|T]) :- + run_init_goal(H), + run_init_goals(T). + +run_init_goal(Text) :- + catch(term_to_atom(Goal, Text), E, + ( print_message(error, init_goal_syntax(E, Text)), + halt(2) + )), + run_init_goal(Goal, Text). + +%! run_program_init is det. +% +% Run goals registered using + +run_program_init :- + forall('$init_goal'(when(program), Goal, Ctx), + run_init_goal(Goal, @(Goal,Ctx))). + +run_main_init :- + findall(Goal-Ctx, '$init_goal'(when(main), Goal, Ctx), Pairs), + '$last'(Pairs, Goal-Ctx), + !, + ( current_prolog_flag(toplevel_goal, default) + -> set_prolog_flag(toplevel_goal, halt) + ; true + ), + run_init_goal(Goal, @(Goal,Ctx)). +run_main_init. + +run_init_goal(Goal, Ctx) :- + ( catch_with_backtrace(user:Goal, E, true) + -> ( var(E) + -> true + ; print_message(error, init_goal_failed(E, Ctx)), + halt(2) + ) + ; ( current_prolog_flag(verbose, silent) + -> Level = silent + ; Level = error + ), + print_message(Level, init_goal_failed(failed, Ctx)), + halt(1) + ). + +%! init_debug_flags is det. +% +% Initialize the various Prolog flags that control the debugger and +% toplevel. + +init_debug_flags :- + once(print_predicate(_, [print], PrintOptions)), + Keep = [keep(true)], + create_prolog_flag(answer_write_options, PrintOptions, Keep), + create_prolog_flag(prompt_alternatives_on, determinism, Keep), + create_prolog_flag(toplevel_extra_white_line, true, Keep), + create_prolog_flag(toplevel_print_factorized, false, Keep), + create_prolog_flag(print_write_options, + [ portray(true), quoted(true), numbervars(true) ], + Keep), + create_prolog_flag(toplevel_residue_vars, false, Keep), + create_prolog_flag(toplevel_list_wfs_residual_program, true, Keep), + '$set_debugger_write_options'(print). + +%! setup_backtrace +% +% Initialise printing a backtrace. + +setup_backtrace :- + ( \+ current_prolog_flag(backtrace, false), + load_setup_file(library(prolog_stack)) + -> true + ; true + ). + +%! setup_colors is det. +% +% Setup interactive usage by enabling colored output. + +setup_colors :- + ( \+ current_prolog_flag(color_term, false), + stream_property(user_input, tty(true)), + stream_property(user_error, tty(true)), + stream_property(user_output, tty(true)), + \+ getenv('TERM', dumb), + load_setup_file(user:library(ansi_term)) + -> true + ; true + ). + +%! setup_history +% +% Enable per-directory persistent history. + +setup_history :- + ( \+ current_prolog_flag(save_history, false), + stream_property(user_input, tty(true)), + \+ current_prolog_flag(readline, false), + load_setup_file(library(prolog_history)) + -> prolog_history(enable) + ; true + ), + set_default_history, + '$load_history'. + +%! setup_readline +% +% Setup line editing. + +setup_readline :- + ( current_prolog_flag(readline, swipl_win) + -> true + ; stream_property(user_input, tty(true)), + current_prolog_flag(tty_control, true), + \+ getenv('TERM', dumb), + ( current_prolog_flag(readline, ReadLine) + -> true + ; ReadLine = true + ), + readline_library(ReadLine, Library), + load_setup_file(library(Library)) + -> set_prolog_flag(readline, Library) + ; set_prolog_flag(readline, false) + ). + +readline_library(true, Library) :- + !, + preferred_readline(Library). +readline_library(false, _) :- + !, + fail. +readline_library(Library, Library). + +preferred_readline(editline). +preferred_readline(readline). + +%! load_setup_file(+File) is semidet. +% +% Load a file and fail silently if the file does not exist. + +load_setup_file(File) :- + catch(load_files(File, + [ silent(true), + if(not_loaded) + ]), _, fail). + + +:- '$hide'('metta_toplevel'/0). % avoid in the GUI stacktrace + +%! 'metta_toplevel' +% +% Called from PL_toplevel() + +'metta_toplevel' :- + '$runtoplevel', + print_message(informational, halt). + +%! '$runtoplevel' +% +% Actually run the toplevel. The values `default` and `prolog` both +% start the interactive toplevel, where `prolog` implies the user gave +% =|-t prolog|=. +% +% @see prolog/0 is the default interactive toplevel + +'$runtoplevel' :- + current_prolog_flag(toplevel_goal, TopLevel0), + toplevel_goal(TopLevel0, TopLevel), + user:TopLevel. + +:- dynamic setup_done/0. +:- volatile setup_done/0. + +toplevel_goal(default, 'metta_query_loop') :- + !, + setup_interactive. +toplevel_goal(prolog, 'metta_query_loop') :- + !, + setup_interactive. +toplevel_goal(Goal, Goal). + +setup_interactive :- + setup_done, + !. +setup_interactive :- + asserta(setup_done), + catch(setup_backtrace, E, print_message(warning, E)), + catch(setup_readline, E, print_message(warning, E)), + catch(setup_history, E, print_message(warning, E)). + +%! '$compile' +% +% Toplevel called when invoked with -c option. + +'$compile' :- + ( catch('$compile_', E, (print_message(error, E), halt(1))) + -> true + ; print_message(error, error(goal_failed('$compile'), _)), + halt(1) + ), + halt. % set exit code + +'$compile_' :- + '$load_system_init_file', + catch(setup_colors, _, true), + '$set_file_search_paths', + init_debug_flags, + '$run_initialization', + opt_attach_packs, + use_module(library(qsave)), + qsave:qsave_toplevel. + +%! '$config' +% +% Toplevel when invoked with --dump-runtime-variables +/* +'$config' :- + '$load_system_init_file', + '$set_file_search_paths', + init_debug_flags, + '$run_initialization', + load_files(library(prolog_config)), + ( catch(prolog_dump_runtime_variables, E, + (print_message(error, E), halt(1))) + -> true + ; print_message(error, error(goal_failed(prolog_dump_runtime_variables),_)) + ). + +*/ + /******************************** + * USER INTERACTIVE LOOP * + *********************************/ + +%! prolog +% +% Run the Prolog toplevel. This is now the same as break/0, which +% pretends to be in a break-level if there is a parent +% environment. + +%prolog :- break. + +:- create_prolog_flag(toplevel_mode, backtracking, []). + +%! 'metta_query_loop' +% +% Run the normal Prolog query loop. Note that the query is not +% protected by catch/3. Dealing with unhandled exceptions is done +% by the C-function query_loop(). This ensures that unhandled +% exceptions are really unhandled (in Prolog). + +'metta_query_loop' :- + current_prolog_flag(toplevel_mode, recursive), + !, + break_level(Level), + read_expanded_query(Level, Query, Bindings), + ( Query == end_of_file + -> print_message(query, query(eof)) + ; '$call_no_catch'('metta_execute_query'(Query, Bindings, _)), + ( current_prolog_flag(toplevel_mode, recursive) + -> 'metta_query_loop' + ; '$switch_toplevel_mode'(backtracking), + 'metta_query_loop' % Maybe throw('$switch_toplevel_mode')? + ) + ). +'metta_query_loop' :- + break_level(BreakLev), + repeat, + read_expanded_query(BreakLev, Query, Bindings), + ( Query == end_of_file + -> !, print_message(query, query(eof)) + ; 'metta_execute_query'(Query, Bindings, _), + ( current_prolog_flag(toplevel_mode, recursive) + -> !, + '$switch_toplevel_mode'(recursive), + 'metta_query_loop' + ; fail + ) + ). + +break_level(BreakLev) :- + ( current_prolog_flag(break_level, BreakLev) + -> true + ; BreakLev = -1 + ). + +read_expanded_query(BreakLev, ExpandedQuery, ExpandedBindings) :- + '$current_typein_module'(TypeIn), + ( stream_property(user_input, tty(true)) + -> '$system_prompt'(TypeIn, BreakLev, Prompt), + prompt(Old, '| ') + ; Prompt = '', + prompt(Old, '') + ), + trim_stacks, + trim_heap, + repeat, + read_query(Prompt, Query, Bindings), + prompt(_, Old), + catch(call_expand_query(Query, ExpandedQuery, + Bindings, ExpandedBindings), + Error, + (print_message(error, Error), fail)), + !. + +%! read_s_term_with_history(-Term, +Options) +% +% Read a term guide by Options and maintain a history similar to most +% Unix shells. +% +% When read_history reads a term of the form $silent(Goal), it will +% call Goal and pretend it has not seen anything. This hook is used by +% the GNU-Emacs interface to for communication between GNU-EMACS and +% SWI-Prolog. + +read_s_term_with_history(Term, Options) :- + '$option'(prompt(Prompt), Options, '~! metta>'), + '$option'(input(Input), Options, user_input), + repeat, + prompt_history(Prompt), + read_query_line(Input, Raw), + read_history_(Raw, Term, Options), + !. + + +%! read_query(+Prompt, -Goal, -Bindings) is det. +% +% Read the next query. The first clause deals with the case where +% !-based history is enabled. The second is used if we have command +% line editing. + + +:- if(current_prolog_flag(emscripten, true)). +read_query(_Prompt, Goal, Bindings) :- + '$can_yield', + !, + await(goal, GoalString), + term_string(Goal, GoalString, [variable_names(Bindings)]). +:- endif. +read_query(Prompt, Goal, Bindings) :- + current_prolog_flag(history, N), + integer(N), N > 0, + !, + read_s_term_with_history( + Goal, + [ show(h), + help('!h'), + no_save([trace, end_of_file]), + prompt(Prompt), + variable_names(Bindings) + ]). +read_query(Prompt, Goal, Bindings) :- + remove_history_prompt(Prompt, Prompt1), + repeat, % over syntax errors + prompt1(Prompt1), + read_query_line(user_input, Line), + '$save_history_line'(Line), % save raw line (edit syntax errors) + '$current_typein_module'(TypeIn), + catch(read_s_term_as_atom(Line, Goal, + [ variable_names(Bindings), + module(TypeIn) + ]), E, + ( print_message(error, E), + fail + )), + !, + '$save_history_event'(Line). % save event (no syntax errors) + +%! read_query_line(+Input, -Line) is det. + +read_query_line(Input, Line) :- + stream_property(Input, error(true)), + !, + Line = end_of_file. +read_query_line(Input, Line) :- + catch(read_s_term_as_atom(Input, Line), Error, true), + save_debug_after_read, + ( var(Error) + -> true + ; catch(print_message(error, Error), _, true), + ( Error = error(syntax_error(_),_) + -> fail + ; throw(Error) + ) + ). + +%! read_s_term_as_atom(+Input, -Line) +% +% Read the next term as an atom and skip to the newline or a +% non-space character. + +read_s_term_as_atom(In, Line) :- + read_metta(In,Line), + ( Line == end_of_file + -> true + ; skip_to_nl(In) + ). +/* +read_s_term_as_atom(In, Line) :- + '$raw_read'(In, Line), + ( Line == end_of_file + -> true + ; skip_to_nl(In) + ). +*/ + +%! skip_to_nl(+Input) is det. +% +% Read input after the term. Skips white space and %... comment +% until the end of the line or a non-blank character. + +skip_to_nl(In) :- + repeat, + peek_char(In, C), + ( C == '%' + -> skip(In, '\n') + ; char_type(C, space) + -> get_char(In, _), + C == '\n' + ; true + ), + !. + +remove_history_prompt('', '') :- !. +remove_history_prompt(Prompt0, Prompt) :- + atom_chars(Prompt0, Chars0), + clean_history_prompt_chars(Chars0, Chars1), + delete_leading_blanks(Chars1, Chars), + atom_chars(Prompt, Chars). + +clean_history_prompt_chars([], []). +clean_history_prompt_chars(['~', !|T], T) :- !. +clean_history_prompt_chars([H|T0], [H|T]) :- + clean_history_prompt_chars(T0, T). + +delete_leading_blanks([' '|T0], T) :- + !, + delete_leading_blanks(T0, T). +delete_leading_blanks(L, L). + + +%! set_default_history +% +% Enable !-based numbered command history. This is enabled by default +% if we are not running under GNU-emacs and we do not have our own +% line editing. + +set_default_history :- + current_prolog_flag(history, _), + !. +set_default_history :- + ( ( \+ current_prolog_flag(readline, false) + ; current_prolog_flag(emacs_inferior_process, true) + ) + -> create_prolog_flag(history, 0, []) + ; create_prolog_flag(history, 25, []) + ). + + + /******************************* + * TOPLEVEL DEBUG * + *******************************/ + +%! save_debug_after_read +% +% Called right after the toplevel read to save the debug status if +% it was modified from the GUI thread using e.g. +% +% == +% thread_signal(main, gdebug) +% == +% +% @bug Ideally, the prompt would change if debug mode is enabled. +% That is hard to realise with all the different console +% interfaces supported by SWI-Prolog. + +save_debug_after_read :- + current_prolog_flag(debug, true), + !, + save_debug. +save_debug_after_read. + +save_debug :- + ( tracing, + notrace + -> Tracing = true + ; Tracing = false + ), + current_prolog_flag(debug, Debugging), + set_prolog_flag(debug, false), + create_prolog_flag(query_debug_settings, + debug(Debugging, Tracing), []). + +restore_debug :- + current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), + set_prolog_flag(debug, Debugging), + ( Tracing == true + -> trace + ; true + ). + +%:- '$initialization'(create_prolog_flag(query_debug_settings, debug(false, false), [])). + + + /******************************** + * PROMPTING * + ********************************/ + +'$system_prompt'(Module, BrekLev, Prompt) :- + current_prolog_flag(toplevel_prompt, PAtom), + atom_codes(PAtom, P0), + ( Module \== user + -> '$substitute'('~m', [Module, ': '], P0, P1) + ; '$substitute'('~m', [], P0, P1) + ), + ( BrekLev > 0 + -> '$substitute'('~l', ['[', BrekLev, '] '], P1, P2) + ; '$substitute'('~l', [], P1, P2) + ), + current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), + ( Tracing == true + -> '$substitute'('~d', ['[trace] '], P2, P3) + ; Debugging == true + -> '$substitute'('~d', ['[debug] '], P2, P3) + ; '$substitute'('~d', [], P2, P3) + ), + atom_chars(Prompt, P3). + +'$substitute'(From, T, Old, New) :- + atom_codes(From, FromCodes), + phrase(subst_chars(T), T0), + '$append'(Pre, S0, Old), + '$append'(FromCodes, Post, S0) -> + '$append'(Pre, T0, S1), + '$append'(S1, Post, New), + !. +'$substitute'(_, _, Old, Old). + +subst_chars([]) --> + []. +subst_chars([H|T]) --> + { atomic(H), + !, + atom_codes(H, Codes) + }, + Codes, + subst_chars(T). +subst_chars([H|T]) --> + H, + subst_chars(T). + + + /******************************** + * EXECUTION * + ********************************/ + +%! 'metta_execute_query'(Goal, Bindings, -Truth) is det. +% +% Execute Goal using Bindings. + +'metta_execute_query'(Var, _, true) :- + var(Var), + !, + print_message(informational, var_query(Var)). +'metta_execute_query'(Goal, Bindings, Truth) :- + '$current_typein_module'(TypeIn), + '$dwim_correct_goal'(TypeIn:Goal, Bindings, Corrected), + !, + setup_call_cleanup( + '$set_source_module'(M0, TypeIn), + expand_goal(Corrected, Expanded), + '$set_source_module'(M0)), + print_message(silent, toplevel_goal(Expanded, Bindings)), + '$execute_goal2'(Expanded, Bindings, Truth). +'metta_execute_query'(_, _, false) :- + notrace, + print_message(query, query(no)). + +'$execute_goal2'(Goal, Bindings, true) :- + restore_debug, + '$current_typein_module'(TypeIn), + residue_vars(TypeIn:Goal, Vars, TypeIn:Delays, Chp), + deterministic(Det), + ( save_debug + ; restore_debug, fail + ), + flush_output(user_output), + ( Det == true + -> DetOrChp = true + ; DetOrChp = Chp + ), + call_expand_answer(Bindings, NewBindings), + ( \+ \+ write_bindings(NewBindings, Vars, Delays, DetOrChp) + -> ! + ). +'$execute_goal2'(_, _, false) :- + save_debug, + print_message(query, query(no)). + +residue_vars(Goal, Vars, Delays, Chp) :- + current_prolog_flag(toplevel_residue_vars, true), + !, + '$wfs_call'(call_residue_vars(stop_backtrace(Goal, Chp), Vars), Delays). +residue_vars(Goal, [], Delays, Chp) :- + '$wfs_call'(stop_backtrace(Goal, Chp), Delays). + +stop_backtrace(Goal, Chp) :- + toplevel_call(Goal), + prolog_current_choice(Chp). + +toplevel_call(Goal) :- + call(Goal), + no_lco. + +no_lco. + +%! write_bindings(+Bindings, +ResidueVars, +Delays, +DetOrChp) +%! is semidet. +% +% Write bindings resulting from a query. The flag +% prompt_alternatives_on determines whether the user is prompted +% for alternatives. =groundness= gives the classical behaviour, +% =determinism= is considered more adequate and informative. +% +% Succeeds if the user accepts the answer and fails otherwise. +% +% @arg ResidueVars are the residual constraints and provided if +% the prolog flag `toplevel_residue_vars` is set to +% `project`. + +write_bindings(Bindings, ResidueVars, Delays, DetOrChp) :- + '$current_typein_module'(TypeIn), + translate_bindings(Bindings, Bindings1, ResidueVars, TypeIn:Residuals), + omit_qualifier(Delays, TypeIn, Delays1), + name_vars(Bindings1, Residuals, Delays1), + write_bindings2(Bindings1, Residuals, Delays1, DetOrChp). + +write_bindings2([], Residuals, Delays, _) :- + current_prolog_flag(prompt_alternatives_on, groundness), + !, + print_message(query, query(yes(Delays, Residuals))). +write_bindings2(Bindings, Residuals, Delays, true) :- + current_prolog_flag(prompt_alternatives_on, determinism), + !, + print_message(query, query(yes(Bindings, Delays, Residuals))). +write_bindings2(Bindings, Residuals, Delays, Chp) :- + repeat, + print_message(query, query(more(Bindings, Delays, Residuals))), + get_respons(Action, Chp), + ( Action == redo + -> !, fail + ; Action == show_again + -> fail + ; !, + print_message(query, query(done)) + ). + +name_vars(Bindings, Residuals, Delays) :- + current_prolog_flag(toplevel_name_variables, true), + !, + '$term_multitons'(t(Bindings,Residuals,Delays), Vars), + name_vars_(Vars, Bindings, 0), + term_variables(t(Bindings,Residuals,Delays), SVars), + anon_vars(SVars). +name_vars(_Bindings, _Residuals, _Delays). + +name_vars_([], _, _). +name_vars_([H|T], Bindings, N) :- + name_var(Bindings, Name, N, N1), + H = '$VAR'(Name), + name_vars_(T, Bindings, N1). + +anon_vars([]). +anon_vars(['$VAR'('_')|T]) :- + anon_vars(T). + +name_var(Bindings, Name, N0, N) :- + between(N0, infinite, N1), + I is N1//26, + J is 0'A + N1 mod 26, %' + ( I == 0 + -> format(atom(Name), '_~c', [J]) + ; format(atom(Name), '_~c~d', [J, I]) + ), + ( current_prolog_flag(toplevel_print_anon, false) + -> true + ; \+ is_bound(Bindings, Name) + ), + !, + N is N1+1. + +is_bound([Vars=_|T], Name) :- + ( in_vars(Vars, Name) + -> true + ; is_bound(T, Name) + ). + +in_vars(Name, Name) :- !. +in_vars(Names, Name) :- + '$member'(Name, Names). + +%! residual_goals(:NonTerminal) +% +% Directive that registers NonTerminal as a collector for residual +% goals. +/* +:- multifile + residual_goal_collector/1. + +:- meta_predicate + residual_goals(2). + +residual_goals(NonTerminal) :- + throw(error(context_error(nodirective, residual_goals(NonTerminal)), _)). + +system:term_expansion((:- residual_goals(NonTerminal)), + 'metta_toplevel':residual_goal_collector(M2:Head)) :- + \+ current_prolog_flag(xref, true), + prolog_load_context(module, M), + strip_module(M:NonTerminal, M2, Head), + '$must_be'(callable, Head). + +%! prolog:residual_goals// is det. +% +% DCG that collects residual goals that are not associated with +% the answer through attributed variables. + +:- public prolog:residual_goals//0. + +prolog:residual_goals --> + { findall(NT, residual_goal_collector(NT), NTL) }, + collect_residual_goals(NTL). + +collect_residual_goals([]) --> []. +collect_residual_goals([H|T]) --> + ( call(H) -> [] ; [] ), + collect_residual_goals(T). +*/ + + +%! prolog:translate_bindings(+Bindings0, -Bindings, +ResidueVars, +%! +ResidualGoals, -Residuals) is det. +% +% Translate the raw variable bindings resulting from successfully +% completing a query into a binding list and list of residual +% goals suitable for human consumption. +% +% @arg Bindings is a list of binding(Vars,Value,Substitutions), +% where Vars is a list of variable names. E.g. +% binding(['A','B'],42,[])` means that both the variable +% A and B have the value 42. Values may contain terms +% '$VAR'(Name) to indicate sharing with a given variable. +% Value is always an acyclic term. If cycles appear in the +% answer, Substitutions contains a list of substitutions +% that restore the original term. +% +% @arg Residuals is a pair of two lists representing residual +% goals. The first element of the pair are residuals +% related to the query variables and the second are +% related that are disconnected from the query. +/* +:- public + prolog:translate_bindings/5. +:- meta_predicate + prolog:translate_bindings(+, -, +, +, :). + +prolog:translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals) :- + translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals). +*/ +translate_bindings(Bindings0, Bindings, ResidueVars, Residuals) :- + prolog:residual_goals(ResidueGoals, []), + translate_bindings(Bindings0, Bindings, ResidueVars, ResidueGoals, + Residuals). + +translate_bindings(Bindings0, Bindings, [], [], _:[]-[]) :- + term_attvars(Bindings0, []), + !, + join_same_bindings(Bindings0, Bindings1), + factorize_bindings(Bindings1, Bindings2), + bind_vars(Bindings2, Bindings3), + filter_bindings(Bindings3, Bindings). +translate_bindings(Bindings0, Bindings, ResidueVars, ResGoals0, + TypeIn:Residuals-HiddenResiduals) :- + project_constraints(Bindings0, ResidueVars), + hidden_residuals(ResidueVars, Bindings0, HiddenResiduals0), + omit_qualifiers(HiddenResiduals0, TypeIn, HiddenResiduals), + copy_term(Bindings0+ResGoals0, Bindings1+ResGoals1, Residuals0), + '$append'(ResGoals1, Residuals0, Residuals1), + omit_qualifiers(Residuals1, TypeIn, Residuals), + join_same_bindings(Bindings1, Bindings2), + factorize_bindings(Bindings2, Bindings3), + bind_vars(Bindings3, Bindings4), + filter_bindings(Bindings4, Bindings). + +hidden_residuals(ResidueVars, Bindings, Goal) :- + term_attvars(ResidueVars, Remaining), + term_attvars(Bindings, QueryVars), + subtract_vars(Remaining, QueryVars, HiddenVars), + copy_term(HiddenVars, _, Goal). + +subtract_vars(All, Subtract, Remaining) :- + sort(All, AllSorted), + sort(Subtract, SubtractSorted), + ord_subtract(AllSorted, SubtractSorted, Remaining). + +ord_subtract([], _Not, []). +ord_subtract([H1|T1], L2, Diff) :- + diff21(L2, H1, T1, Diff). + +diff21([], H1, T1, [H1|T1]). +diff21([H2|T2], H1, T1, Diff) :- + compare(Order, H1, H2), + diff3(Order, H1, T1, H2, T2, Diff). + +diff12([], _H2, _T2, []). +diff12([H1|T1], H2, T2, Diff) :- + compare(Order, H1, H2), + diff3(Order, H1, T1, H2, T2, Diff). + +diff3(<, H1, T1, H2, T2, [H1|Diff]) :- + diff12(T1, H2, T2, Diff). +diff3(=, _H1, T1, _H2, T2, Diff) :- + ord_subtract(T1, T2, Diff). +diff3(>, H1, T1, _H2, T2, Diff) :- + diff21(T2, H1, T1, Diff). + + +%! project_constraints(+Bindings, +ResidueVars) is det. +% +% Call :project_attributes/2 if the Prolog flag +% `toplevel_residue_vars` is set to `project`. + +project_constraints(Bindings, ResidueVars) :- + !, + term_attvars(Bindings, AttVars), + phrase(attribute_modules(AttVars), Modules0), + sort(Modules0, Modules), + term_variables(Bindings, QueryVars), + project_attributes(Modules, QueryVars, ResidueVars). +project_constraints(_, _). + +project_attributes([], _, _). +project_attributes([M|T], QueryVars, ResidueVars) :- + ( current_predicate(M:project_attributes/2), + catch(M:project_attributes(QueryVars, ResidueVars), E, + print_message(error, E)) + -> true + ; true + ), + project_attributes(T, QueryVars, ResidueVars). + +attribute_modules([]) --> []. +attribute_modules([H|T]) --> + { get_attrs(H, Attrs) }, + attrs_modules(Attrs), + attribute_modules(T). + +attrs_modules([]) --> []. +attrs_modules(att(Module, _, More)) --> + [Module], + attrs_modules(More). + + +%! join_same_bindings(Bindings0, Bindings) +% +% Join variables that are bound to the same value. Note that we +% return the _last_ value. This is because the factorization may +% be different and ultimately the names will be printed as V1 = +% V2, ... VN = Value. Using the last, Value has the factorization +% of VN. + +join_same_bindings([], []). +join_same_bindings([Name=V0|T0], [[Name|Names]=V|T]) :- + take_same_bindings(T0, V0, V, Names, T1), + join_same_bindings(T1, T). + +take_same_bindings([], Val, Val, [], []). +take_same_bindings([Name=V1|T0], V0, V, [Name|Names], T) :- + V0 == V1, + !, + take_same_bindings(T0, V1, V, Names, T). +take_same_bindings([Pair|T0], V0, V, Names, [Pair|T]) :- + take_same_bindings(T0, V0, V, Names, T). + + +%! omit_qualifiers(+QGoals, +TypeIn, -Goals) is det. +% +% Omit unneeded module qualifiers from QGoals relative to the +% given module TypeIn. + + +omit_qualifiers([], _, []). +omit_qualifiers([Goal0|Goals0], TypeIn, [Goal|Goals]) :- + omit_qualifier(Goal0, TypeIn, Goal), + omit_qualifiers(Goals0, TypeIn, Goals). + +omit_qualifier(M:G0, TypeIn, G) :- + M == TypeIn, + !, + omit_meta_qualifiers(G0, TypeIn, G). +omit_qualifier(M:G0, TypeIn, G) :- + predicate_property(TypeIn:G0, imported_from(M)), + \+ predicate_property(G0, transparent), + !, + G0 = G. +omit_qualifier(_:G0, _, G) :- + predicate_property(G0, built_in), + \+ predicate_property(G0, transparent), + !, + G0 = G. +omit_qualifier(M:G0, _, M:G) :- + atom(M), + !, + omit_meta_qualifiers(G0, M, G). +omit_qualifier(G0, TypeIn, G) :- + omit_meta_qualifiers(G0, TypeIn, G). + +omit_meta_qualifiers(V, _, V) :- + var(V), + !. +omit_meta_qualifiers((QA,QB), TypeIn, (A,B)) :- + !, + omit_qualifier(QA, TypeIn, A), + omit_qualifier(QB, TypeIn, B). +omit_meta_qualifiers(tnot(QA), TypeIn, tnot(A)) :- + !, + omit_qualifier(QA, TypeIn, A). +omit_meta_qualifiers(freeze(V, QGoal), TypeIn, freeze(V, Goal)) :- + callable(QGoal), + !, + omit_qualifier(QGoal, TypeIn, Goal). +omit_meta_qualifiers(when(Cond, QGoal), TypeIn, when(Cond, Goal)) :- + callable(QGoal), + !, + omit_qualifier(QGoal, TypeIn, Goal). +omit_meta_qualifiers(G, _, G). + + +%! bind_vars(+BindingsIn, -Bindings) +% +% Bind variables to '$VAR'(Name), so they are printed by the names +% used in the query. Note that by binding in the reverse order, +% variables bound to one another come out in the natural order. + +bind_vars(Bindings0, Bindings) :- + bind_query_vars(Bindings0, Bindings, SNames), + bind_skel_vars(Bindings, Bindings, SNames, 1, _). + +bind_query_vars([], [], []). +bind_query_vars([binding(Names,Var,[Var2=Cycle])|T0], + [binding(Names,Cycle,[])|T], [Name|SNames]) :- + Var == Var2, % also implies var(Var) + !, + '$last'(Names, Name), + Var = '$VAR'(Name), + bind_query_vars(T0, T, SNames). +bind_query_vars([B|T0], [B|T], AllNames) :- + B = binding(Names,Var,Skel), + bind_query_vars(T0, T, SNames), + ( var(Var), \+ attvar(Var), Skel == [] + -> AllNames = [Name|SNames], + '$last'(Names, Name), + Var = '$VAR'(Name) + ; AllNames = SNames + ). + + + +bind_skel_vars([], _, _, N, N). +bind_skel_vars([binding(_,_,Skel)|T], Bindings, SNames, N0, N) :- + bind_one_skel_vars(Skel, Bindings, SNames, N0, N1), + bind_skel_vars(T, Bindings, SNames, N1, N). + +%! bind_one_skel_vars(+Subst, +Bindings, +VarName, +N0, -N) +% +% Give names to the factorized variables that do not have a name +% yet. This introduces names _S, avoiding duplicates. If a +% factorized variable shares with another binding, use the name of +% that variable. +% +% @tbd Consider the call below. We could remove either of the +% A = x(1). Which is best? +% +% == +% ?- A = x(1), B = a(A,A). +% A = x(1), +% B = a(A, A), % where +% A = x(1). +% == + +bind_one_skel_vars([], _, _, N, N). +bind_one_skel_vars([Var=Value|T], Bindings, Names, N0, N) :- + ( var(Var) + -> ( '$member'(binding(Names, VVal, []), Bindings), + same_term(Value, VVal) + -> '$last'(Names, VName), + Var = '$VAR'(VName), + N2 = N0 + ; between(N0, infinite, N1), + atom_concat('_S', N1, Name), + \+ memberchk(Name, Names), + !, + Var = '$VAR'(Name), + N2 is N1 + 1 + ) + ; N2 = N0 + ), + bind_one_skel_vars(T, Bindings, Names, N2, N). + + +%! factorize_bindings(+Bindings0, -Factorized) +% +% Factorize cycles and sharing in the bindings. + +factorize_bindings([], []). +factorize_bindings([Name=Value|T0], [binding(Name, Skel, Subst)|T]) :- + '$factorize_term'(Value, Skel, Subst0), + ( current_prolog_flag(toplevel_print_factorized, true) + -> Subst = Subst0 + ; only_cycles(Subst0, Subst) + ), + factorize_bindings(T0, T). + + +only_cycles([], []). +only_cycles([B|T0], List) :- + ( B = (Var=Value), + Var = Value, + acyclic_term(Var) + -> only_cycles(T0, List) + ; List = [B|T], + only_cycles(T0, T) + ). + + +%! filter_bindings(+Bindings0, -Bindings) +% +% Remove bindings that must not be printed. There are two of them: +% Variables whose name start with '_' and variables that are only +% bound to themselves (or, unbound). + +filter_bindings([], []). +filter_bindings([H0|T0], T) :- + hide_vars(H0, H), + ( ( arg(1, H, []) + ; self_bounded(H) + ) + -> filter_bindings(T0, T) + ; T = [H|T1], + filter_bindings(T0, T1) + ). + +hide_vars(binding(Names0, Skel, Subst), binding(Names, Skel, Subst)) :- + hide_names(Names0, Skel, Subst, Names). + +hide_names([], _, _, []). +hide_names([Name|T0], Skel, Subst, T) :- + ( sub_atom(Name, 0, _, _, '_'), + current_prolog_flag(toplevel_print_anon, false), + sub_atom(Name, 1, 1, _, Next), + char_type(Next, prolog_var_start) + -> true + ; Subst == [], + Skel == '$VAR'(Name) + ), + !, + hide_names(T0, Skel, Subst, T). +hide_names([Name|T0], Skel, Subst, [Name|T]) :- + hide_names(T0, Skel, Subst, T). + +self_bounded(binding([Name], Value, [])) :- + Value == '$VAR'(Name). + +%! get_respons(-Action, +Chp) +% +% Read the continuation entered by the user. + +:- if(current_prolog_flag(emscripten, true)). +get_respons(Action, _Chp) :- + '$can_yield', + !, + await(more, ActionS), + atom_string(Action, ActionS). +:- endif. +get_respons(Action, Chp) :- + repeat, + flush_output(user_output), + get_single_char(Char), + answer_respons(Char, Chp, Action), + ( Action == again + -> print_message(query, query(action)), + fail + ; ! + ). + +answer_respons(Char, _, again) :- + '$in_reply'(Char, '?h'), + !, + print_message(help, query(help)). +answer_respons(Char, _, redo) :- + '$in_reply'(Char, ';nrNR \t'), + !, + print_message(query, if_tty([ansi(bold, ';', [])])). +answer_respons(Char, _, redo) :- + '$in_reply'(Char, 'tT'), + !, + trace, + save_debug, + print_message(query, if_tty([ansi(bold, '; [trace]', [])])). +answer_respons(Char, _, continue) :- + '$in_reply'(Char, 'ca\n\ryY.'), + !, + print_message(query, if_tty([ansi(bold, '.', [])])). +answer_respons(0'b, _, show_again) :- %' + !, + break. +answer_respons(0'*, Chp, show_again) :- %' + !, + print_last_chpoint(Chp). +answer_respons(Char, _, show_again) :- + print_predicate(Char, Pred, Options), + !, + print_message(query, if_tty(['~w'-[Pred]])), + set_prolog_flag(answer_write_options, Options). +answer_respons(-1, _, show_again) :- + !, + print_message(query, halt('EOF')), + halt(0). +answer_respons(Char, _, again) :- + print_message(query, no_action(Char)). + +print_predicate(0'w, [write], [ quoted(true), + spacing(next_argument) + ]). +print_predicate(0'p, [print], [ quoted(true), + portray(true), + max_depth(10), + spacing(next_argument) + ]). + + +print_last_chpoint(Chp) :- + current_predicate(print_last_choice_point/0), + !, + print_last_chpoint_(Chp). +print_last_chpoint(Chp) :- + use_module(library(prolog_stack), [print_last_choicepoint/2]), + print_last_chpoint_(Chp). + +print_last_chpoint_(Chp) :- + print_last_choicepoint(Chp, [message_level(information)]). + + + /******************************* + * EXPANSION * + *******************************/ + +:- user:dynamic(expand_query/4). +:- user:multifile(expand_query/4). + +call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- + user:expand_query(Goal, Expanded, Bindings, ExpandedBindings), + !. +call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- + toplevel_variables:expand_query(Goal, Expanded, Bindings, ExpandedBindings), + !. +call_expand_query(Goal, Goal, Bindings, Bindings). + + +:- user:dynamic(expand_answer/2). +:- user:multifile(expand_answer/2). + +call_expand_answer(Goal, Expanded) :- + user:expand_answer(Goal, Expanded), + !. +call_expand_answer(Goal, Expanded) :- + toplevel_variables:expand_answer(Goal, Expanded), + !. +call_expand_answer(Goal, Goal). + + + +/* Part of SWI-Prolog + + Author: Jan Wielemaker + E-mail: J.Wielemaker@vu.nl + WWW: http://www.swi-prolog.org + Copyright (c) 1985-2020, University of Amsterdam + VU University Amsterdam + CWI Amsterdam + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in + the documentation and/or other materials provided with the + distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. +*/ +/* +:- module('$history', + [ read_term_with_history/2, % -Term, +Line + '$save_history_line'/1, % +Line + '$clean_history'/0, + '$load_history'/0, + '$save_history_event'/1 + ]). + +%! read_term_with_history(-Term, +Options) +% +% Read a term guide by Options and maintain a history similar to most +% Unix shells. +% +% When read_history reads a term of the form $silent(Goal), it will +% call Goal and pretend it has not seen anything. This hook is used by +% the GNU-Emacs interface to for communication between GNU-EMACS and +% SWI-Prolog. + +read_term_with_history(Term, Options) :- + '$option'(prompt(Prompt), Options, '~! ?> '), + '$option'(input(Input), Options, user_input), + repeat, + prompt_history(Prompt), + read_query_line(Input, Raw), + read_history_(Raw, Term, Options), + !. +*/ +read_history_(Raw, _Term, Options) :- + '$option'(show(Raw), Options, history), + list_history, + !, + fail. +read_history_(Raw, _Term, Options) :- + '$option'(help(Raw), Options, '!help'), + '$option'(show(Show), Options, '!history'), + print_message(help, history(help(Show, Raw))), + !, + fail. +read_history_(Raw, Term, Options) :- + expand_history(Raw, Expanded, Changed), + '$save_history_line'(Expanded), + '$option'(module(Module), Options, Var), + ( Module == Var + -> '$current_typein_module'(Module) + ; true + ), + ( '$select'(variable_names(Bindings), Options, Options1) + -> true + ; Options1 = Options, + i(Bindings) % ignore + ), + catch(read_term_from_atom(Expanded, Term0, + [ module(Module), + variable_names(Bindings0) + | Options1 + ]), + E, + ( print_message(error, E), + fail + )), + ( var(Term0) + -> Term = Term0, + Bindings = Bindings0 + ; Term0 = '$silent'(Goal) + -> user:ignore(Goal), + read_term_with_history(Term, Options) + ; save_event(Expanded, Options), + ( Changed == true + -> print_message(query, history(expanded(Expanded))) + ; true + ), + Term = Term0, + Bindings = Bindings0 + ). + +i(_). + +% list_history +% Write history events to the current output stream. + +list_history :- + ( '$history'(Last, _) + -> true + ; Last = 0 + ), + history_depth_(Depth), + plus(First, Depth, Last), + findall(Nr/Event, + ( between(First, Last, Nr), + '$history'(Nr, Event) + ), + Events), + print_message(query, history(history(Events))). + +'$clean_history' :- + retractall('$history'(_,_)). + +%! '$load_history' is det. +% +% Load persistent history using a hook + +'$load_history' :- + '$clean_history', + current_prolog_flag(history, Depth), + Depth > 0, + catch(prolog:history(current_input, load), _, true), !. +'$load_history'. + + +%% prompt_history(+Prompt) +% +% Give prompt, substituting '~!' by the event number. + +prompt_history('') :- + !, + ttyflush. +prompt_history(Prompt) :- + ( '$history'(Last, _) + -> This is Last + 1 + ; This = 1 + ), + atom_codes(Prompt, SP), + atom_codes(This, ST), + ( atom_codes('~!', Repl), + substitute(Repl, ST, SP, String) + -> prompt1(String) + ; prompt1(Prompt) + ), + ttyflush. + +% substitute(+Old, +New, +String, -Substituted) +% substitute first occurence of Old in String by New + +substitute(Old, New, String, Substituted) :- + '$append'(Head, OldAndTail, String), + '$append'(Old, Tail, OldAndTail), + !, + '$append'(Head, New, HeadAndNew), + '$append'(HeadAndNew, Tail, Substituted), + !. + +%! '$save_history_line'(+Line) +% +% Add Line to the command line editing history. + +:- multifile + prolog:history_line/2. + +'$save_history_line'(end_of_file) :- !. +'$save_history_line'(Line) :- + format(string(CompleteLine), '~W~W', + [ Line, [partial(true)], + '.', [partial(true)] + ]), + catch(prolog:history(user_input, add(CompleteLine)), _, fail), + !. +'$save_history_line'(_). + +%! save_event(+Event, +Options) +% +% Save Event into the history system unless it appears in the +% option `no_save`. + +save_event(Event, Options) :- + '$option'(no_save(Dont), Options), + memberchk(Event, Dont), + !. +save_event(Event, _) :- + '$save_history_event'(Event). + +%! '$save_history_event'(+Event) is det. +% +% Save an input line as text into the !- based history. Event is one +% of +% +% * a *string*. The event is added with a next number at the end. +% * a *pair*. The event is added with the given sequence number. + +:- thread_local + '$history'/2. + +'$save_history_event'(Num-String) :- + integer(Num), string(String), + !, + asserta('$history'(Num, String)), + truncate_history(Num). +'$save_history_event'(Event) :- + to_string(Event, Event1), + !, + last_event(Num, String), + ( Event1 == String + -> true + ; New is Num + 1, + asserta('$history'(New, Event1)), + truncate_history(New) + ). +'$save_history_event'(Event) :- + '$type_error'(history_event, Event). + +last_event(Num, String) :- + '$history'(Num, String), + !. +last_event(0, ""). + +to_string(String, String) :- + string(String), + !. +to_string(Atom, String) :- + atom_string(Atom, String). + +truncate_history(New) :- + history_depth_(Depth), + remove_history(New, Depth). + +remove_history(New, Depth) :- + New - Depth =< 0, + !. +remove_history(New, Depth) :- + Remove is New - Depth, + retract('$history'(Remove, _)), + !. +remove_history(_, _). + +% history_depth_(-Depth) +% Define the depth to which to keep the history. + +history_depth_(N) :- + current_prolog_flag(history, N), + integer(N), + N > 0, + !. +history_depth_(25). + +% expand_history(+Raw, -Expanded) +% Expand Raw using the available history list. Expandations performed +% are: +% +% !match % Last event starting +% !n % Event nr. +% !! % last event +% +% Note: the first character after a '!' should be a letter or number to +% avoid problems with the cut. + +expand_history(Raw, Expanded, Changed) :- + atom_chars(Raw, RawString), + expand_history2(RawString, ExpandedString, Changed), + atom_chars(Expanded, ExpandedString), + !. + +expand_history2([!], [!], false) :- !. +expand_history2([!, C|Rest], [!|Expanded], Changed) :- + not_event_char(C), + !, + expand_history2([C|Rest], Expanded, Changed). +expand_history2([!|Rest], Expanded, true) :- + !, + match_event(Rest, Event, NewRest), + '$append'(Event, RestExpanded, Expanded), + !, + expand_history2(NewRest, RestExpanded, _). +expand_history2(['\''|In], ['\''|Out], Changed) :- + !, + skip_quoted(In, '\'', Out, Tin, Tout), + expand_history2(Tin, Tout, Changed). +expand_history2(['"'|In], ['"'|Out], Changed) :- + !, + skip_quoted(In, '"', Out, Tin, Tout), + expand_history2(Tin, Tout, Changed). +expand_history2([H|T], [H|R], Changed) :- + !, + expand_history2(T, R, Changed). +expand_history2([], [], false). + +skip_quoted([Q|T],Q,[Q|R], T, R) :- !. +skip_quoted([\,Q|T0],Q,[\,Q|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([Q,Q|T0],Q,[Q,Q|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([C|T0],Q,[C|T], In, Out) :- + !, + skip_quoted(T0, Q, T, In, Out). +skip_quoted([], _, [], [], []). + +% get_last_event(-String) +% return last event typed as a string + +get_last_event(Event) :- + '$history'(_, Atom), + atom_chars(Atom, Event), + !. +get_last_event(_) :- + print_message(query, history(no_event)), + fail. + +% match_event(+Spec, -Event, -Rest) +% Use Spec as a specification of and event and return the event as Event +% and what is left of Spec as Rest. + +match_event(Spec, Event, Rest) :- + find_event(Spec, Event, Rest), + !. +match_event(_, _, _) :- + print_message(query, history(no_event)), + fail. + +not_event_char(C) :- code_type(C, csym), !, fail. +not_event_char(!) :- !, fail. +not_event_char(_). + +find_event([!|Left], Event, Left) :- + !, + get_last_event(Event). +find_event([N|Rest], Event, Left) :- + code_type(N, digit), + !, + take_number([N|Rest], String, Left), + number_codes(Number, String), + '$history'(Number, Atom), + atom_chars(Atom, Event). +find_event(Spec, Event, Left) :- + take_string(Spec, String, Left), + matching_event(String, Event). + +take_string([C|Rest], [C|String], Left) :- + code_type(C, csym), + !, + take_string(Rest, String, Left). +take_string([C|Rest], [], [C|Rest]) :- !. +take_string([], [], []). + +take_number([C|Rest], [C|String], Left) :- + code_type(C, digit), + !, + take_string(Rest, String, Left). +take_number([C|Rest], [], [C|Rest]) :- !. +take_number([], [], []). + +% matching_event(+String, -Event) +% +% Return first event with prefix String as a Prolog string. + +matching_event(String, Event) :- + '$history'(_, AtomEvent), + atom_chars(AtomEvent, Event), + '$append'(String, _, Event), + !. + diff --git a/metta_vspace/pyswip-want/metta_types.pl b/metta_vspace/pyswip-want/metta_types.pl new file mode 100755 index 00000000..f40155de --- /dev/null +++ b/metta_vspace/pyswip-want/metta_types.pl @@ -0,0 +1,1160 @@ + + +:- throw(metta_types). + + +mnotrace(G):- notrace(G). + +is_decl_type(ST):- metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). +is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). +is_decl_type(ST):- \+ atom(ST),!,fail. +is_decl_type('%Undefined%'). is_decl_type('Number'). +is_decl_type('String'). is_decl_type('Bool'). +is_decl_type('Type'). is_decl_type('Symbol'). +is_decl_type('Expression'). +is_decl_type('Any'). is_decl_type('Atom'). +is_decl_type(Type):- is_decl_type_l(Type). +is_decl_type_l('StateMonad'). is_decl_type_l('List'). + + +last_type(List,Type):- is_list(List),last(List,Type),is_type(Type). +last_type(Type,Type):- is_type(Type),!. + +is_type(Type):- nontype(Type),!,fail. +is_type(Type):- is_decl_type(Type). +is_type(Type):- atom(Type). + +nontype(Type):- var(Type),!. +nontype('->'). +nontype(N):- number(N). + +needs_eval(EvalMe):- is_list(EvalMe),!. + + +args_violation(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !, fail. +args_violation(Depth,Self,[A|Args],[L|List]):- once(arg_violation(Depth,Self,A,L) ; args_violation(Depth,Self,Args,List)). +arg_violation(Depth,Self,A,L):- \+ (get_type0(Depth,Self,A,T), \+ type_violation(T,L)). +%arg_violation(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_violation(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!,fail. +type_violation(T,L):- T\=L. + + +not_arg_violation(Depth,Self,Arg,Type):- + \+ arg_violation(Depth,Self,Arg,Type), + arg_conform(Depth,Self,Arg,Type). + + +args_conform(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !. +args_conform(Depth,Self,[A|Args],[L|List]):- arg_conform(Depth,Self,A,L) , args_conform(Depth,Self,Args,List). +arg_conform(Depth,Self,A,L):- get_type(Depth,Self,A,T), type_conform(T,L),!. +arg_conform(_Dpth,_Slf,_,_). +%arg_conform(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. + +type_conform(T,L):- T=L,!. +type_conform(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!. + +is_nonspecific_type(Var):- var(Var),!. +is_nonspecific_type('%Undefined%'). +is_nonspecific_type([]). +is_nonspecific_type('Atom'). +is_nonspecific_type('Any'). + +%get_type(Depth,Self,Val,Type):- get_type01(Depth,Self,Val,Type). +get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. + +get_type9(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type9(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type9(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. +get_type9(Depth,Self,Val,Type):- get_type2(Depth,Self,Val,Type), ( is_list(Type)->! ; true). +get_type9(_Dpth,_Slf,_Vl,[]). + +get_type2(Depth,_Slf,Type,Type):- Depth<1,!. +%get_type(Depth,Self,Val,Type):- is_debugging(eval), !, +% ftrace(get_type0(Depth,Self,Val,Type)). +get_type2(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type2(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type). + + +is_space_type(Space,is_asserted_space):- was_asserted_space(Space),!. +is_space_type(Space,Test):- no_repeats(Test,space_type_method(Test,_,_)),call(Test,Space),!. + +is_state_type(State,Test):- no_repeats(Test,state_type_method(Test,_,_)),call(Test,State),!. + +%is_dynaspace(Expr):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +is_dynaspace(S):- var(S),!,fail. +is_dynaspace(S):- was_asserted_space(S). +is_dynaspace(S):- py_named_space(S). +is_dynaspace(S):- typed_list(S,'hyperon::space::DynSpace',_). +% notrace( is_space_type(Expr,_)),!. +get_type0(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type0(Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, + ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(Depth2,Self,Val,Type))). +get_type0(Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(Depth,Self,Val,Type),!. +get_type0(Depth,Self,Val,Type):- get_type03(Depth,Self,Val,Type),!. + +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +/* +(: Left + (-> %Undefined% Either)) + +(: (Left %Undefined%) Either) + +*/ +get_type01(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type01(_Dpth,_Slf, [],'%Undefined%'):- !. +get_type01(_Dpth,_Slf,Val,'Number'):- number(Val). +get_type01(_Dpth,_Slf,Val,'Integer'):- integer(Val). +get_type01(_Dpth,_Slf,Val,'Decimal'):- float(Val). +get_type01(_Dpth,_Slf,Val,'Rational'):- rational(Val). +get_type01(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type01(_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). +get_type01(_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. +get_type01(_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). +get_type01(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). +get_type01(Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(Depth2,Self,Val,Type). +%get_type01(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +get_type01(_Dpth,_Slf,_Val,'String'). +get_type01(_Dpth,_Slf,_Val,'Symbol'). + + + +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. +get_type02(Depth,Self,[Op|Expr],Type):- maplist(get_type(Depth,Self),Expr,Types), + metta_type(Self,[Op|Types],Type). + + +get_type03(Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), + get_type03(Depth,Self,[Op|Args],Type1), + get_type(Depth,Self,Arg,ArgType), + ignore(sub_var(ArgType,Type1)->true;(sub_term(ST,Type1),var(ST),ST=ArgType)), + last(Type1,Type). + +get_type03(_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). +get_type03(Depth,Self,[Op|Args],Type):- symbol(Op), + get_operator_typedef(Self,Op,Params,RetType), + % Fills in type variables when possible + ignore(args_conform(Depth,Self,Args,Params)), + % unitests: arg violations should return () + (\+ args_violation(Depth,Self,Args,Params) -> Type=RetType ; (Type=[],!)). + + +get_type03(Depth,Self,Expr,Type):- get_type02(Depth,Self,Expr,Type). + +get_type03(Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, + eval_args(Depth2,Self,EvalMe,Val), + \+ needs_eval(Val),!, + get_type(Depth2,Self,Val,Type). + +get_type03(Depth,Self,Expr,Type):- Depth2 is Depth-1, + eval_args(Depth2, Self,Expr,Val), Expr\=@=Val,!, + get_type(Depth2,Self,Val,Type). + +get_type03(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). + +get_type03(_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. + +get_type03(Depth,Self,List,Types):- List\==[], is_list(List), + Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). + + +get_type03(_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. + +%get_type0(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +%get_type(Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +%get_type0(_Dpth,_Slf,_,'%Undefined%'):- fail. + +state_decltype(Expr,Type):- functor(Expr,_,A),arg(A,Expr,Type),once(var(Type);is_decl_type(Type)). + + +get_type1(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type1(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type1(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type1(Depth,Self,Val,Type). + + +get_type1(Depth,Self,EvalMe,Type):- needs_eval(EvalMe), + eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, + get_type1(Depth,Self,Val,Type). + +get_type1(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), + is_type(Type). +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), + is_type(Type). + +get_type1(Depth,_Slf,Type,Type):- Depth<1,!. +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type1(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(Depth2,Self),List,Types). +get_type1(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type1(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(Depth2,Self,Type2,Type). +%get_type1(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). + +get_type1(Depth,Self,Expr,Type):-Depth2 is Depth-1, + eval_args(Depth2,Self,Expr,Val), + Expr\=@=Val,get_type1(Depth2,Self,Val,Type). + + +get_type1(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type1(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type1(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type1(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type1(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type1(Depth2,Self,Ele,Type)),!. +%get_type1(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type1(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type1(_Dpth,_Slf,_,'%Undefined%'):- fail. +%get_type1(Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(Depth2,Self,Val,Type). + + + +as_prolog(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. +as_prolog(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). +as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). + + + +adjust_args(_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. +adjust_args(Depth,Self,Op,X,Y):- + get_operator_typedef(Self,Op,Params,RetType), + try_adjust_arg_types(RetType,Depth,Self,Params,X,Y). + +try_adjust_arg_types(RetType,Depth,Self,Params,X,Y):- + as_prolog(Depth,Self,X,M), + args_conform(Depth,Self,M,Params),!, + set_type(Depth,Self,Y,RetType), + into_typed_args(Depth,Self,Params,M,Y). +%adjust_args(Depth,Self,_,X,Y):- is_list(X), !, maplist(eval_args(Depth,Self),X,Y). +%adjust_args(Depth,Self,_,X,Y):- is_list(X), !, maplist(as_prolog(Depth,Self),X,Y),!. +adjust_args(Depth,Self,_,X,Y):- as_prolog(Depth,Self,X,Y). + +into_typed_args(_Dpth,_Slf,T,M,Y):- (\+ iz_conz(T); \+ iz_conz(M)),!, M=Y. +into_typed_args(Depth,Self,[T|TT],[M|MM],[Y|YY]):- + into_typed_arg(Depth,Self,T,M,Y), + into_typed_args(Depth,Self,TT,MM,YY). + +into_typed_arg(Depth,Self,T,M,Y):- var(M),!,Y=M,put_attr(M,metta_vtype,typed_arg(Depth,Self,T)). +into_typed_arg(Depth,Self,T,M,Y):- into_typed_arg0(Depth,Self,T,M,Y)*->true;M=Y. + +into_typed_arg0(Depth,Self,T,M,Y):- var(T), !, get_type(Depth,Self,M,T), + (wants_eval_kind(T)->eval_args(Depth,Self,M,Y);Y=M). + +into_typed_arg0(Depth,Self,T,M,Y):- is_pro_eval_kind(T),!,eval_args(Depth,Self,M,Y). +into_typed_arg0(Depth,Self,T,M,Y):- ground(M),!, \+ arg_violation(Depth,Self,M,T),Y=M. +into_typed_arg0(_Dpth,_Slf,T,M,Y):- is_non_eval_kind(T),!,M=Y. +into_typed_arg0(Depth,Self,_,M,Y):- eval_args(Depth,Self,M,Y). + +set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. +set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) + *->Was=Type + ; if_t(var(Var),put_attr(Var,metta_vtype,typed_arg(Depth,Self,Type)). + +metta_vtype:attr_unify_hook(typed_arg(Depth,Self,Type),NewValue):- + get_type(Depth,Self,NewValue,Was), + can_assign(Was,Type). + +can_assign(Was,Type):- Was=Type,!. +can_assign(Was,Type):- (is_nonspecific_type(Was);is_nonspecific_type(Type)),!. +can_assign(_Ws,_Typ). + +is_non_eval_kind(Type):- is_nonspecific_type(Type),!. +is_non_eval_kind('Atom'). + +is_pro_eval_kind('Number'). +is_pro_eval_kind('Symbol'). +is_pro_eval_kind('Bool'). + +is_feo_f('Cons'). + +is_seo_f('{...}'). +is_seo_f('[...]'). +is_seo_f('{}'). +is_seo_f('[]'). +is_seo_f('StateMonad'). +is_seo_f('State'). +is_seo_f('Event'). +is_seo_f('Concept'). +is_seo_f(N):- number(N),!. + +%is_user_defined_goal(Self,[H|_]):- is_user_defined_head(Eq,Self,H). + +is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). +is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). +is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). +is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). + +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). +is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). + +%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). +%s_user_defined_head_f1(Other,H):- get_metta_atom(Eq,Other,[H|_]). +is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). +%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). + + + +is_special_op(Op):- current_self(Self),is_special_op(Self,Op). + +is_special_op(_Slf,F):- \+ atom(F), \+ var(F), !, fail. +is_special_op(Self,Op):- get_operator_typedef(Self,Op,Params,_RetType), + maplist(is_non_eval_kind,Params). +is_special_op(_Slf,Op):- is_special_builtin(Op). + +is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. +is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. +is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'-fn',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- atom_concat(Mid,'-p',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. +is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. +%is_function(F):- atom(F). +is_metta_data_functor(Eq,_Othr,H):- clause(is_data_functor(H),_). +is_metta_data_functor(Eq,Other,H):- H\=='Right', H\=='Something', + % metta_type(Other,H,_), % fail, + \+ get_metta_atom(Eq,Other,[H|_]), + \+ metta_defn(Eq,Other,[H|_],_), + \+ is_metta_builtin(H), + \+ is_comp_op(H,_), + \+ is_math_op(H,_,_). + + +get_operator_typedef(Self,Op,Params,RetType):- + get_operator_typedef1(Self,Op,Params,RetType)*->true; + get_operator_typedef2(Self,Op,Params,RetType). +get_operator_typedef1(Self,Op,Params,RetType):- + metta_type(Self,Op,['->'|List]), + append(Params,[RetType],List). +get_operator_typedef2(Self,Op,Params,RetType):- + nop(fbug(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). + + +is_special_builtin('case'). +is_special_builtin(':'). + +%is_special_builtin('='). +is_special_builtin('->'). +is_special_builtin('bind!'). +%is_special_builtin('new-space'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('if'). +is_special_builtin('rtrace'). +is_special_builtin('or'). +is_special_builtin('and'). +is_special_builtin('not'). +is_special_builtin('match'). +is_special_builtin('call'). +is_special_builtin('let'). +is_special_builtin('let*'). +is_special_builtin('nop'). +is_special_builtin('assertEqual'). +is_special_builtin('assertEqualToResult'). +is_special_builtin('collapse'). +is_special_builtin('superpose'). +%is_special_builtin('=='). + +is_metta_builtin(Special):- is_special_builtin(Special). + +is_metta_builtin('=='). +is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). +is_metta_builtin('println!'). +is_metta_builtin('transfer!'). +is_metta_builtin('compile!'). +is_metta_builtin('+'). +is_metta_builtin('-'). +is_metta_builtin('*'). +is_metta_builtin('/'). +is_metta_builtin('%'). +is_metta_builtin('=='). +is_metta_builtin('<'). +is_metta_builtin('>'). +is_metta_builtin('all'). +is_metta_builtin('import!'). +is_metta_builtin('pragma!'). + + +% Comparison Operators in Prolog +% is_comp_op('=', 2). % Unification +is_comp_op('\\=', 2). % Not unifiable +is_comp_op('==', 2). % Strict equality +is_comp_op('\\==', 2). % Strict inequality +is_comp_op('@<', 2). % Term is before +is_comp_op('@=<', 2). % Term is before or equal +is_comp_op('@>', 2). % Term is after +is_comp_op('@>=', 2). % Term is after or equal +is_comp_op('=<', 2). % Less than or equal +is_comp_op('<', 2). % Less than +is_comp_op('>=', 2). % Greater than or equal +is_comp_op('>', 2). % Greater than +is_comp_op('is', 2). % Arithmetic equality +is_comp_op('=:=', 2). % Arithmetic exact equality +is_comp_op('=\\=', 2). % Arithmetic inequality + +% Arithmetic Operations +is_math_op('*', 2, exists). % Multiplication +is_math_op('**', 2, exists). % Exponentiation +is_math_op('+', 1, exists). % Unary Plus +is_math_op('+', 2, exists). % Addition +is_math_op('-', 1, exists). % Unary Minus +is_math_op('-', 2, exists). % Subtraction +is_math_op('.', 2, exists). % Array Indexing or Member Access (Depends on Context) +is_math_op('/', 2, exists). % Division +is_math_op('//', 2, exists). % Floor Division +is_math_op('///', 2, exists). % Alternative Division Operator (Language Specific) +is_math_op('/\\', 2, exists). % Bitwise AND +is_math_op('<<', 2, exists). % Bitwise Left Shift +is_math_op('>>', 2, exists). % Bitwise Right Shift +is_math_op('\\', 1, exists). % Bitwise NOT +is_math_op('\\/', 2, exists). % Bitwise OR +is_math_op('^', 2, exists). % Bitwise XOR +is_math_op('abs', 1, exists). % Absolute Value +is_math_op('acos', 1, exists). % Arc Cosine +is_math_op('acosh', 1, exists). % Hyperbolic Arc Cosine +is_math_op('asin', 1, exists). % Arc Sine +is_math_op('asinh', 1, exists). % Hyperbolic Arc Sine +is_math_op('atan', 1, exists). % Arc Tangent +is_math_op('atan2', 2, exists). % Two-Argument Arc Tangent +is_math_op('atanh', 1, exists). % Hyperbolic Arc Tangent +is_math_op('cbrt', 1, exists). % Cube Root +is_math_op('ceil', 1, exists). % Ceiling Function +is_math_op('ceiling', 1, exists). % Ceiling Value +is_math_op('cmpr', 2, exists). % Compare Two Values (Language Specific) +is_math_op('copysign', 2, exists). % Copy the Sign of a Number +is_math_op('cos', 1, exists). % Cosine Function +is_math_op('cosh', 1, exists). % Hyperbolic Cosine +is_math_op('cputime', 0, exists). % CPU Time +is_math_op('degrees', 1, exists). % Convert Radians to Degrees +is_math_op('denominator', 1, exists). % Get Denominator of Rational Number +is_math_op('div', 2, exists). % Integer Division +is_math_op('e', 0, exists). % Euler's Number +is_math_op('epsilon', 0, exists). % Machine Epsilon +is_math_op('erf', 1, exists). % Error Function +is_math_op('erfc', 1, exists). % Complementary Error Function +is_math_op('eval', 1, exists). % Evaluate Expression +is_math_op('exp', 1, exists). % Exponential Function +is_math_op('expm1', 1, exists). % exp(x) - 1 +is_math_op('fabs', 1, exists). % Absolute Value (Floating-Point) +is_math_op('float', 1, exists). % Convert Rational to Float +is_math_op('float_fractional_part', 1, exists). % Fractional Part of Float +is_math_op('float_integer_part', 1, exists). % Integer Part of Float +is_math_op('floor', 1, exists). % Floor Value +is_math_op('fmod', 2, exists). % Floating-Point Modulo Operation +is_math_op('frexp', 2, exists). % Get Mantissa and Exponent +is_math_op('fsum', 1, exists). % Accurate Floating Point Sum +is_math_op('gamma', 1, exists). % Gamma Function +is_math_op('gcd', 2, exists). % Greatest Common Divisor +is_math_op('getbit', 2, exists). % Get Bit at Position +is_math_op('hypot', 2, exists). % Euclidean Norm, Square Root of Sum of Squares +is_math_op('inf', 0, exists). % Positive Infinity +is_math_op('integer', 1, exists). % Convert Float to Integer +is_math_op('isinf', 1, exists). % Check for Infinity +is_math_op('isnan', 1, exists). % Check for Not a Number +is_math_op('lcm', 2, exists). % Least Common Multiple +is_math_op('ldexp', 2, exists). % Load Exponent of a Floating Point Number +is_math_op('lgamma', 1, exists). % Log Gamma +is_math_op('log', 1, exists). % Logarithm Base e +is_math_op('log10', 1, exists). % Base 10 Logarithm +is_math_op('log1p', 1, exists). % log(1 + x) +is_math_op('log2', 1, exists). % Base 2 Logarithm +is_math_op('lsb', 1, exists). % Least Significant Bit +is_math_op('max', 2, exists). % Maximum of Two Values +is_math_op('maxr', 2, exists). % Maximum Rational Number (Language Specific) +is_math_op('min', 2, exists). % Minimum of Two Values +is_math_op('minr', 2, exists). % Minimum Rational Number (Language Specific) +is_math_op('mod', 2, exists). % Modulo Operation +is_math_op('modf', 2, exists). % Return Fractional and Integer Parts +is_math_op('msb', 1, exists). % Most Significant Bit +is_math_op('nan', 0, exists). % Not a Number +is_math_op('nexttoward', 2, exists). % Next Representable Floating-Point Value +is_math_op('numerator', 1, exists). % Get Numerator of Rational Number +is_math_op('pi', 0, exists). % Pi +is_math_op('popcount', 1, exists). % Count of Set Bits +is_math_op('pow', 2, exists). % Exponentiation +is_math_op('powm', 3, exists). % Modulo Exponentiation +is_math_op('radians', 1, exists). % Convert Degrees to Radians +is_math_op('remainder', 2, exists). % Floating-Point Remainder +is_math_op('remquo', 3, exists). % Remainder and Part of Quotient +is_math_op('round', 1, exists). % Round to Nearest Integer +is_math_op('roundeven', 1, exists). % Round to Nearest Even Integer +is_math_op('setbit', 2, exists). % Set Bit at Position +is_math_op('signbit', 1, exists). % Sign Bit of Number +is_math_op('sin', 1, exists). % Sine Function +is_math_op('sinh', 1, exists). % Hyperbolic Sine +is_math_op('sqrt', 1, exists). % Square Root +is_math_op('tan', 1, exists). % Tangent Function +is_math_op('tanh', 1, exists). % Hyperbolic Tangent +is_math_op('testbit', 2, exists). % Test Bit at Position +is_math_op('trunc', 1, exists). % Truncate Decimal to Integer +is_math_op('ulogb', 1, exists). % Unbiased Exponent of a Floating-Point Value +is_math_op('xor', 2, exists). % Exclusive OR +is_math_op('zerop', 1, exists). % Test for Zero + + + +end_of_file. + + + +% # 1. Length of a List +% % Normal Recursive +% prolog +len([], 0). +len([_|T], N) :- + len(T, X), + N is X + 1. +% + +% % With Accumulator +% prolog +len_acc(L, N) :- + len_acc(L, 0, N). + +len_acc([], Acc, Acc). +len_acc([_|T], Acc, N) :- + NewAcc is Acc + 1, + len_acc(T, NewAcc, N). +% + +% # 2. Sum of a List +% % Normal Recursive +% prolog +sum([], 0). +sum([H|T], S) :- + sum(T, X), + S is X + H. +% + +% % With Accumulator +% prolog +sum_acc(L, S) :- + sum_acc(L, 0, S). + +sum_acc([], Acc, Acc). +sum_acc([H|T], Acc, S) :- + NewAcc is Acc + H, + sum_acc(T, NewAcc, S). +% + +% # 3. Factorial +% % Normal Recursive +% prolog +factorial(0, 1). +factorial(N, F) :- + N > 0, + X is N - 1, + factorial(X, Y), + F is N * Y. +% + +% % With Accumulator +% prolog +factorial_acc(N, F) :- + factorial_acc(N, 1, F). + +factorial_acc(0, Acc, Acc). +factorial_acc(N, Acc, F) :- + N > 0, + NewAcc is Acc * N, + NewN is N - 1, + factorial_acc(NewN, NewAcc, F). +% + +% # 4. Reverse List +% % Normal Recursive +% prolog +reverse_list([], []). +reverse_list([H|T], R) :- + reverse_list(T, RevT), + append(RevT, [H], R). +% + +% % With Accumulator +% prolog +reverse_list_acc(L, R) :- + reverse_list_acc(L, [], R). + +reverse_list_acc([], Acc, Acc). +reverse_list_acc([H|T], Acc, R) :- + reverse_list_acc(T, [H|Acc], R). +% + +% # 5. Fibonacci +% % Normal Recursive +% prolog +fibonacci(0, 0). +fibonacci(1, 1). +fibonacci(N, F) :- + N > 1, + N1 is N - 1, + N2 is N - 2, + fibonacci(N1, F1), + fibonacci(N2, F2), + F is F1 + F2. +% + +% % With Accumulator +% prolog +fibonacci_acc(N, F) :- + fibonacci_acc(N, 0, 1, F). + +fibonacci_acc(0, A, _, A). +fibonacci_acc(N, A, B, F) :- + N > 0, + NewN is N - 1, + NewB is A + B, + fibonacci_acc(NewN, B, NewB, F). +% + + + +% 6. Find an Element in a List +% # Normal Recursive +% prolog +element_in_list(X, [X|_]). +element_in_list(X, [_|T]) :- element_in_list(X, T). +% + +% # With Accumulator +% prolog +element_in_list_acc(X, L) :- element_in_list_acc(X, L, false). + +element_in_list_acc(X, [], Acc) :- Acc. +element_in_list_acc(X, [X|_], _) :- true. +element_in_list_acc(X, [_|T], Acc) :- element_in_list_acc(X, T, Acc). +% + +% 7. Check if a List is a Palindrome +% # Normal Recursive +% prolog +is_palindrome(L) :- reverse(L, L). +% + +% # With Accumulator +% prolog +is_palindrome_acc(L) :- reverse_acc(L, [], L). + +reverse_acc([], Acc, Acc). +reverse_acc([H|T], Acc, R) :- reverse_acc(T, [H|Acc], R). +% + +% 8. Calculate the Product of All Elements in a List +% # Normal Recursive +% prolog +product_list([], 1). +product_list([H|T], P) :- + product_list(T, Temp), + P is H * Temp. +% + +% # With Accumulator +% prolog +product_list_acc(L, P) :- product_list_acc(L, 1, P). + +product_list_acc([], Acc, Acc). +product_list_acc([H|T], Acc, P) :- + NewAcc is Acc * H, + product_list_acc(T, NewAcc, P). +% + +% 9. Find the Nth Element of a List +% # Normal Recursive +% prolog +nth_element(1, [H|_], H). +nth_element(N, [_|T], X) :- + N > 1, + M is N - 1, + nth_element(M, T, X). +% + +% # With Accumulator +% prolog +nth_element_acc(N, L, X) :- nth_element_acc(N, L, 1, X). + +nth_element_acc(N, [H|_], N, H). +nth_element_acc(N, [_|T], Acc, X) :- + NewAcc is Acc + 1, + nth_element_acc(N, T, NewAcc, X). +% + +% 10. Count the Occurrences of an Element in a List +% # Normal Recursive +% prolog +count_occurrences(_, [], 0). +count_occurrences(X, [X|T], N) :- + count_occurrences(X, T, M), + N is M + 1. +count_occurrences(X, [Y|T], N) :- + X \= Y, + count_occurrences(X, T, N). +% + +% # With Accumulator +% prolog +count_occurrences_acc(X, L, N) :- count_occurrences_acc(X, L, 0, N). + +count_occurrences_acc(_, [], Acc, Acc). +count_occurrences_acc(X, [X|T], Acc, N) :- + NewAcc is Acc + 1, + count_occurrences_acc(X, T, NewAcc, N). +count_occurrences_acc(X, [Y|T], Acc, N) :- + X \= Y, + count_occurrences_acc(X, T, Acc, N). +% + +% 11. Calculate the Greatest Common Divisor of Two Numbers +% # Normal Recursive +% prolog +gcd(A, 0, A) :- A > 0. +gcd(A, B, GCD) :- + B > 0, + R is A mod B, + gcd(B, R, GCD). +% + +% # With Accumulator +% prolog +gcd_acc(A, B, GCD) :- gcd_acc(A, B, 1, GCD). + +gcd_acc(A, 0, Acc, Acc) :- A > 0. +gcd_acc(A, B, Acc, GCD) :- + B > 0, + R is A mod B, + NewAcc is B * Acc, + gcd_acc(B, R, NewAcc, GCD). +% + +% 12. Check if a Number is Prime +% # Normal Recursive +% prolog +is_prime(2). +is_prime(N) :- + N > 2, + \+ (between(2, sqrt(N), X), N mod X =:= 0). +% + +% # With Accumulator +% prolog +is_prime_acc(N) :- is_prime_acc(N, 2). + +is_prime_acc(2, 2). +is_prime_acc(N, Acc) :- + N > 2, + ( + (Acc * Acc > N, !); + (N mod Acc =\= 0, NewAcc is Acc + 1, is_prime_acc(N, NewAcc)) + ). +% + +% 13. Merge Two Sorted Lists into a Sorted List +% # Normal Recursive +% prolog +merge_sorted([], L, L). +merge_sorted(L, [], L). +merge_sorted([H1|T1], [H2|T2], [H1|M]) :- + H1 =< H2, + merge_sorted(T1, [H2|T2], M). +merge_sorted([H1|T1], [H2|T2], [H2|M]) :- + H1 > H2, + merge_sorted([H1|T1], T2, M). +% + +% # With Accumulator +% prolog +merge_sorted_acc(L1, L2, L) :- merge_sorted_acc(L1, L2, [], L). + +merge_sorted_acc([], L, Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc(L, [], Acc, L) :- reverse(Acc, L), !. +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 =< H2, + merge_sorted_acc(T1, [H2|T2], [H1|Acc], M). +merge_sorted_acc([H1|T1], [H2|T2], Acc, [H|M]) :- + H1 > H2, + merge_sorted_acc([H1|T1], T2, [H2|Acc], M). + +% + +% 14. Find the Last Element of a List +% # Normal Recursive +% prolog +last_element([H], H). +last_element([_|T], X) :- last_element(T, X). +% + +% # With Accumulator +% prolog +last_element_acc([H|T], X) :- last_element_acc(T, H, X). + +last_element_acc([], Acc, Acc). +last_element_acc([H|T], _, X) :- last_element_acc(T, H, X). +% + +% 15. Remove Duplicate Elements from a List +% # Normal Recursive +% prolog +remove_duplicates([], []). +remove_duplicates([H|T], [H|T1]) :- \+ member(H, T), remove_duplicates(T, T1). +remove_duplicates([_|T], T1) :- remove_duplicates(T, T1). +% + +% # With Accumulator +% prolog +remove_duplicates_acc(L, R) :- remove_duplicates_acc(L, [], R). + +remove_duplicates_acc([], Acc, Acc). +remove_duplicates_acc([H|T], Acc, R) :- + (member(H, Acc) -> remove_duplicates_acc(T, Acc, R); + remove_duplicates_acc(T, [H|Acc], R)). +% + +% 16. Check if a Binary Tree is Balanced +% # Normal Recursive +% prolog +is_balanced(null). +is_balanced(tree(L, _, R)) :- + height(L, Hl), + height(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + is_balanced(L), + is_balanced(R). +% + +% # With Accumulator +% prolog +is_balanced_acc(T) :- is_balanced_acc(T, 0). + +is_balanced_acc(null, 0). +is_balanced_acc(tree(L, _, R), H) :- + is_balanced_acc(L, Hl), + is_balanced_acc(R, Hr), + D is Hl - Hr, + abs(D) =< 1, + H is max(Hl, Hr) + 1. +% + +% 17. Calculate the Height of a Binary Tree +% # Normal Recursive +% prolog +height(null, 0). +height(tree(L, _, R), H) :- + height(L, Hl), + height(R, Hr), + H is max(Hl, Hr) + 1. +% + +% # With Accumulator +% prolog +height_acc(T, H) :- height_acc(T, 0, H). + +height_acc(null, Acc, Acc). +height_acc(tree(L, _, R), Acc, H) :- + NewAcc is Acc + 1, + height_acc(L, NewAcc, Hl), + height_acc(R, NewAcc, Hr), + H is max(Hl, Hr). +% + +% 18. Search for an Element in a Binary Search Tree +% # Normal Recursive +% prolog +search_bst(tree(_, X, _), X). +search_bst(tree(L, Y, _), X) :- + X < Y, + search_bst(L, X). +search_bst(tree(_, Y, R), X) :- + X > Y, + search_bst(R, X). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +search_bst_acc(Tree, X) :- search_bst(Tree, X). +% + +% 19. Insert an Element into a Binary Search Tree +% # Normal Recursive +% prolog +insert_bst(null, X, tree(null, X, null)). +insert_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + insert_bst(L, X, L1). +insert_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + insert_bst(R, X, R1). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the insertion path is already determined by the BST property. +insert_bst_acc(Tree, X, NewTree) :- insert_bst(Tree, X, NewTree). +% + +% 20. Delete an Element from a Binary Search Tree +% # Normal Recursive +% prolog +delete_bst(Tree, X, NewTree) :- + remove_bst(Tree, X, NewTree). + +remove_bst(tree(L, X, R), X, Merged) :- merge_trees(L, R, Merged), !. +remove_bst(tree(L, Y, R), X, tree(L1, Y, R)) :- + X < Y, + remove_bst(L, X, L1). +remove_bst(tree(L, Y, R), X, tree(L, Y, R1)) :- + X > Y, + remove_bst(R, X, R1). + +merge_trees(null, Tree, Tree). +merge_trees(Tree, null, Tree). +merge_trees(tree(L1, X, R1), tree(L2, Y, R2), tree(Merged, Y, R2)) :- + merge_trees(tree(L1, X, R1), L2, Merged). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the deletion path is already determined by the BST property. +delete_bst_acc(Tree, X, NewTree) :- delete_bst(Tree, X, NewTree). +% + +% 21. Find the Lowest Common Ancestor in a Binary Search Tree +% # Normal Recursive +% prolog +lowest_common_ancestor(tree(_, Y, _), X, Z, Y) :- + X < Y, Z > Y; + X > Y, Z < Y. +lowest_common_ancestor(tree(L, Y, _), X, Z, LCA) :- + X < Y, Z < Y, + lowest_common_ancestor(L, X, Z, LCA). +lowest_common_ancestor(tree(_, Y, R), X, Z, LCA) :- + X > Y, Z > Y, + + + lowest_common_ancestor(R, X, Z, LCA). +% + +% # With Accumulator +% prolog +% The accumulator is not very useful here, as the search path is already determined by the BST property. +lowest_common_ancestor_acc(Tree, X, Z, LCA) :- lowest_common_ancestor(Tree, X, Z, LCA). +% + +% 22. Check if a Graph is Cyclic +% For graphs, it's better to represent them in a Prolog-friendly format, such as adjacency lists. I will use a representation where each node has a list of its neighbors. +% # Normal Recursive +% prolog +is_cyclic(Graph) :- + member(Vertex-_, Graph), + dfs(Vertex, Graph, [Vertex], _), !. + +dfs(Vertex, Graph, Visited, [Vertex|Visited]) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + member(Neighbor, Visited), !. +dfs(Vertex, Graph, Visited, FinalVisited) :- + member(Vertex-Neighbors, Graph), + member(Neighbor, Neighbors), + \+ member(Neighbor, Visited), + dfs(Neighbor, Graph, [Neighbor|Visited], FinalVisited). +% + +% # With Accumulator +% prolog +% Due to the way depth-first search works, a typical accumulator wouldn't be very effective. +% The visited list already acts like an accumulator. +is_cyclic_acc(Graph) :- is_cyclic(Graph). +% + +% 23. Perform a Depth-First Search on a Graph +% # Normal Recursive +% prolog +dfs_graph(Vertex, Graph) :- dfs_vertex(Vertex, Graph, []). + +dfs_vertex(Vertex, _, Visited) :- member(Vertex, Visited), !. +dfs_vertex(Vertex, Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + dfs_neighbors(Neighbors, Graph, [Vertex|Visited]). + +dfs_neighbors([], _, _). +dfs_neighbors([Neighbor|Neighbors], Graph, Visited) :- + dfs_vertex(Neighbor, Graph, Visited), + dfs_neighbors(Neighbors, Graph, Visited). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +dfs_graph_acc(Vertex, Graph) :- dfs_graph(Vertex, Graph). +% + +% 24. Perform a Breadth-First Search on a Graph +% # Normal Recursive +% prolog +bfs_graph(Vertex, Graph) :- + bfs([Vertex], Graph, [Vertex]). + +bfs([], _, _). +bfs([Vertex|Vertices], Graph, Visited) :- + write(Vertex), nl, + member(Vertex-Neighbors, Graph), + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited), + append(Vertices, NewNeighbors, NewVertices), + bfs(NewVertices, Graph, NewVisited). + +filter_unvisited([], Visited, [], Visited). +filter_unvisited([Neighbor|Neighbors], Visited, NewNeighbors, NewVisited) :- + (member(Neighbor, Visited) -> + filter_unvisited(Neighbors, Visited, NewNeighbors, NewVisited); + filter_unvisited(Neighbors, [Neighbor|Visited], NewNeighbors, [Neighbor|NewVisited]) + ). +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +bfs_graph_acc(Vertex, Graph) :- bfs_graph(Vertex, Graph). +% + +% 25. Check if a Graph is Connected +% # Normal Recursive +% prolog +is_connected(Graph) :- + Graph = [Vertex-_|_], + dfs_graph(Vertex, Graph), + \+ (member(OtherVertex-_, Graph), \+ member(OtherVertex, Visited)), !. +% + +% # With Accumulator +% prolog +% The visited list acts as an accumulator. +is_connected_acc(Graph) :- is_connected(Graph). +% + +% 26. Find the Shortest Path between Two Nodes in a Graph +% # Normal Recursive +% prolog +shortest_path(Start, End, Graph, Path) :- + shortest_path([Start], End, Graph, [Start], Path). + +shortest_path(_, End, _, Visited, ReversePath) :- + reverse(ReversePath, [End|_]), !. +shortest_path(Vertices, End, Graph, Visited, Path) :- + adjacent_unvisited(Vertices, Graph, Visited, Adjacent), + append(Visited, Adjacent, NewVisited), + append(Vertices, Adjacent, NewVertices), + shortest_path(NewVertices, End, Graph, NewVisited, Path). +% + +% # With Accumulator +% prolog +% The visited list and the list of vertices to explore act as accumulators. +shortest_path_acc(Start, End, Graph, Path) :- shortest_path(Start, End, Graph, Path). +% + +% 27. Check if a String is a Palindrome +% # Normal Recursive +% prolog +is_string_palindrome(Str) :- string_chars(Str, Chars), is_palindrome(Chars). +% + +% # With Accumulator +% prolog +is_string_pal + +indrome_acc(Str) :- string_chars(Str, Chars), is_palindrome_acc(Chars, []). +% + +% 28. Compute the Edit Distance between Two Strings +% # Normal Recursive +% prolog +edit_distance([], [], 0). +edit_distance([_|T1], [], D) :- + edit_distance(T1, [], D1), + D is D1 + 1. +edit_distance([], [_|T2], D) :- + edit_distance([], T2, D1), + D is D1 + 1. +edit_distance([H1|T1], [H2|T2], D) :- + edit_distance(T1, T2, D1), + D is D1 + (H1 \= H2). +% + +% # With Accumulator +% prolog +edit_distance_acc(S1, S2, D) :- edit_distance_acc(S1, S2, 0, D). + +edit_distance_acc([], [], Acc, Acc). +edit_distance_acc([_|T1], [], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc(T1, [], NewAcc, D). +edit_distance_acc([], [_|T2], Acc, D) :- NewAcc is Acc + 1, edit_distance_acc([], T2, NewAcc, D). +edit_distance_acc([H1|T1], [H2|T2], Acc, D) :- + NewAcc is Acc + (H1 \= H2), + edit_distance_acc(T1, T2, NewAcc, D). +% + +% 29. Find the Longest Common Subsequence of Two Strings +% # Normal Recursive +% prolog +lcs([], _, []). +lcs(_, [], []). +lcs([H|T1], [H|T2], [H|Lcs]) :- lcs(T1, T2, Lcs), !. +lcs(S1, [_|T2], Lcs) :- lcs(S1, T2, Lcs). +lcs([_|T1], S2, Lcs) :- lcs(T1, S2, Lcs). +% + +% # With Accumulator +% prolog +lcs_acc(S1, S2, Lcs) :- lcs_acc(S1, S2, [], Lcs). + +lcs_acc([], _, Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc(_, [], Acc, Lcs) :- reverse(Acc, Lcs). +lcs_acc([H|T1], [H|T2], Acc, Lcs) :- lcs_acc(T1, T2, [H|Acc], Lcs). +lcs_acc(S1, [_|T2], Acc, Lcs) :- lcs_acc(S1, T2, Acc, Lcs). +lcs_acc([_|T1], S2, Acc, Lcs) :- lcs_acc(T1, S2, Acc, Lcs). +% + +% 30. Find the Longest Common Substring of Two Strings +% # Normal Recursive +% prolog +longest_common_substring(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string(Subs, Lcs). + +substring(Str, Sub) :- + append(_, Rest, Str), + append(Sub, _, Rest). + +longest_string([H|T], Longest) :- + longest_string(T, H, Longest). + +longest_string([], Acc, Acc). +longest_string([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string(T, H, Longest); longest_string(T, Acc, Longest)). +% + +% # With Accumulator +% prolog +longest_common_substring_acc(S1, S2, Lcs) :- + findall(Sub, (substring(S1, Sub), substring(S2, Sub)), Subs), + longest_string_acc(Subs, [], Lcs). + +longest_string_acc([], Acc, Acc). +longest_string_acc([H|T], Acc, Longest) :- + length(H, LenH), + length(Acc, LenAcc), + (LenH > LenAcc -> longest_string_acc(T, H, Longest); longest_string_acc(T, Acc, Longest)). +% + + + diff --git a/metta_vspace/pyswip-want/metta_utils.pl b/metta_vspace/pyswip-want/metta_utils.pl new file mode 100755 index 00000000..e96034a0 --- /dev/null +++ b/metta_vspace/pyswip-want/metta_utils.pl @@ -0,0 +1,2513 @@ + +:- set_prolog_flag(verbose_autoload, false). +:- set_prolog_flag(verbose, silent). +:- set_prolog_flag(verbose_load, silent). +:- ensure_loaded(library(logicmoo_utils)). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +:- if(exists_source(library(logicmoo_utils))). +:- ensure_loaded(library(logicmoo_utils)). +:- endif. +:- if(exists_source(library(dictoo))). +:- ensure_loaded(library(dictoo)). +:- endif. + + +:- export(plain_var/1). +plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). +catch_nolog(G):- ignore(catch(notrace(G),E,once(true;nop(u_dmsg(E=G))))). +catch_log(G):- ignore(catch(notrace(G),E,((u_dmsg(E=G),ugtrace(G))))). +% catch_log(G):- ignore(catch(notrace(G),E,((writeln(E=G),catch_nolog(ds))))). + +get_user_error(UE):- stream_property(UE,file_no(2)),!. +get_user_error(UE):- stream_property(UE,alias(user_error)),!. + +ufmt(G):- notrace((fbug(G)->true;ufmt0(G))). +ufmt0(G):- fmt(G)->true;writeln(G). +u_dmsg(G):- is_list(G),!,my_maplist(u_dmsg,G). +u_dmsg(M):- get_user_error(UE), \+ current_predicate(with_toplevel_pp/2),!, with_output_to(UE,ufmt(M)). +u_dmsg(M):- get_user_error(UE),!, with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))). +u_dmsg(M):- get_user_error(UE), stream_property(UO,file_no(1)), current_output(CO),!, + (UO==CO -> fbug(M) ; + (with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))), with_output_to(CO,pp(M)))). +u_dmsg(G):-ufmt(G),!. + + +:- multifile(is_cgi/0). +:- dynamic(is_cgi/0). +:- multifile(arc_html/0). +:- dynamic(arc_html/0). + + +logicmoo_use_swish:- + set_prolog_flag(use_arc_swish,true), + ld_logicmoo_webui,call(call,webui_start_swish_and_clio), + http_handler('/swish', http_redirect(moved, '/swish/'), []). + +arc_user(Nonvar):- nonvar(Nonvar),!,arc_user(Var),!,Nonvar=Var. +arc_user(main):- main_thread, !. %\+ if_thread_main(fail),!. +arc_user(ID):- catch((pengine:pengine_user(ID)),_,fail),!. +arc_user(ID):- catch((xlisting_web:is_cgi_stream,xlisting_web:find_http_session(User),http_session:session_data(User,username(ID))),_,fail),!. +arc_user(ID):- catch((is_cgi, (xlisting_web:find_http_session(ID))),_,fail),!. +arc_user(ID):- is_cgi,!,ID=web_user. +arc_user(ID):- thread_self(ID). + +:- dynamic(arc_user_prop/3). + +%luser_setval(N,V):- nb_setval(N,V),!. +luser_setval(N,V):- arc_user(ID),luser_setval(ID,N,V),!. +luser_setval(ID,N,V):- \+ (arc_sensical_term(N),arc_sensical_term(V)), + warn_skip(not_arc_sensical_term(luser_setval(ID,N,V))). +luser_setval(ID,N,V):- + (atom(N)->nb_setval(N,V);true), + retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). + + +luser_unsetval(N):- ignore(nb_delete(N)), arc_user(ID),luser_unsetval(ID,N),!. +luser_unsetval(ID,N):- retractall(arc_user_prop(ID,N,_)). + +set_luser_default(N,V):- luser_setval(global,N,V). +luser_default(N,V):- var(V),!,luser_getval(N,V). +luser_default(N,V):- set_luser_default(N,V). + +luser_linkval(N,V):- arc_user(ID),luser_linkval(ID,N,V),!. +luser_linkval(ID,N,V):- \+ var(V), \+ (arc_sensical_term(N),arc_sensical_term(V)), + trace, + warn_skip(not_arc_sensical_term(luser_linkval(ID,N,V))). +luser_linkval(ID,N,V):- + (atom(N)->nb_linkval(N,V);true), + retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). + +arc_sensical_term(O):- nonvar(O), O\==[], O\=='', O \= (_ - _), O\==end_of_file. +arc_sensical_term(V,O):- arc_sensical_term(V), !, O=V. + +%arc_option(grid_size_only):- !,fail. +arc_option(O):- luser_getval(O,t). +if_arc_option(O,G):- (arc_option(O)->must_det_ll(G); true). + +with_luser(N,V,Goal):- + (luser_getval(N,OV);OV=[]), + setup_call_cleanup( + luser_setval(N,V), + once(Goal), + luser_setval(N,OV)). + +%luser_getval(N,V):- nb_current(N,VVV),arc_sensical_term(VVV,VV),!,V=VV. +% caches the valuetemp on this thread +luser_getval(N,V):- luser_getval_0(N,VV),VV=V,arc_sensical_term(V),!. + +luser_getval_0(arc_user,V):- arc_user(V). +luser_getval_0(N,V):- luser_getval_1(N,V). + +luser_getval_1(N,V):- luser_getval_2(N,V). +luser_getval_1(N,V):- luser_getval_3(N,V), \+ (luser_getval_2(N,VV), nop(VV\=V)). +luser_getval_1(N,V):- get_luser_default(N,V), \+ (luser_getval_3(N,VV), nop(VV\=V)), \+ (luser_getval_2(N,VV), nop(VV\=V)). + +%luser_getval_0(N,V):- luser_getval_2(N,V), \+ luser_getval_1(N,_). +%luser_getval_0(N,V):- luser_getval_3(N,V), \+ luser_getval_2(N,_), \+ luser_getval_1(N,_). +%luser_getval_3(N,V):- is_cgi, current_predicate(get_param_req/2),get_param_req(N,M),url_decode_term(M,V). +luser_getval_2(N,V):- \+ main_thread, atom(N), httpd_wrapper:http_current_request(Request), member(search(List),Request),member(N=VV,List),url_decode_term(VV,V),arc_sensical_term(V),!. +luser_getval_2(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. + +luser_getval_3(N,V):- arc_user(ID), arc_user_prop(ID,N,V). +luser_getval_3(_,_):- \+ is_cgi, !, fail. +luser_getval_3(N,V):- \+ main_thread, atom(N), current_predicate(get_param_sess/2),get_param_sess(N,M),url_decode_term(M,V),arc_sensical_term(V). +%luser_getval_3(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. + + +get_luser_default(N,V):- arc_user_prop(global,N,VV),VV=V,arc_sensical_term(V),!. +get_luser_default(N,V):- atom(N), current_prolog_flag(N,VV),VV=V,arc_sensical_term(V),!. +%luser_getval(ID,N,V):- thread_self(ID),nb_current(N,V),!. +%luser_getval(ID,N,V):- !, ((arc_user_prop(ID,N,V);nb_current(N,V))*->true;arc_user_prop(global,N,V)). + + +ansi_main:- thread_self(main),nop(is_cgi),!. + +main_thread:- thread_self(main),!. +if_thread_main(G):- main_thread->call(G);true. + + + + +:- if(\+ current_predicate(fbug/1)). +%fbug(P):- format(user_error,'~N~p~n',[P]). +:- endif. + + + +substM(T, F, R, R):- T==F,!. +substM(T, _, _, R):- \+ compound(T),!,R=T. +substM([H1|T1], F, R, [H2|T2]) :- !, substM(H1, F, R, H2), substM(T1, F, R, T2). +substM(C1, F, R, C2) :- C1 =.. [Fn|A1], substM_l(A1,F,R,A2),!, C2 =.. [Fn|A2]. +substM_l([], _, _, []). substM_l([H1|T1], F, R, [H2|T2]) :- substM(H1, F, R, H2), substM_l(T1, F, R, T2). + + +pp_m(Cl):- write_src(Cl),!. +pp_m(C,Cl):- color_g_mesg(C,write_src(Cl)),!. +% notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). +pp_q(Cl):- + notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). + + +ncatch(G,E,F):- catch(G,E,F). +mcatch(G,E,F):- catch(G,E,F). +%mcatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),ignore(call(F)),throw(E))). +%ncatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),call(G))). +%ncatch(G,E,(F)). + + +:- if( \+ current_predicate(if_t/2)). +:- meta_predicate(if_t(0,0)). +if_t(IF, THEN) :- call(call,ignore((((IF,THEN))))). +:- endif. + +:- if( \+ current_predicate(must_ll/1)). +:- meta_predicate(must_ll(0)). +must_ll(G):- md(call,G)*->true;throw(not_at_least_once(G)). +:- endif. + +:- if( \+ current_predicate(at_least_once/1)). +:- meta_predicate(at_least_once(0)). +at_least_once(G):- call(G)*->true;throw(not_at_least_once(G)). +:- endif. + +%wraps_each(must_ll,call). +wraps_each(must_det_ll,once). +md_like(MD):- wraps_each(MD,_). + +remove_must_det(_):- !,fail. +%remove_must_det(MD):- !. +%remove_must_det(MD):- nb_current(remove_must_det(MD),TF),!,TF==true. +%remove_must_det(MD):- \+ false. + +%remove_mds(MD,G,GGG):- compound(G), G = must_det_ll(GG),!,expand_goal(GG,GGG),!. +%remove_mds(MD,G,GGG):- compound(G), G = must_det_l(GG),!,expand_goal(GG,GGG),!. +remove_mds(MD,GG,GO):- sub_term(G,GG),compound(G),compound_name_arg(G,MD,GGGG),subst001(GG,G,GGGG,GGG),remove_mds(MD,GGG,GO). +remove_mds(_,GG,GG). +%remove_mds(MD,G,GG):- compound(G), G = ..[MD,AA], compound(G),removed_term(G,GO),expand_goal(GO,GG). + +%never_rrtrace:-!. +never_rrtrace:- nb_current(cant_rrtrace,t),!,notrace. +never_rrtrace:- is_cgi,notrace. + + +%itrace:- !. +%itrace:- \+ current_prolog_flag(debug,true),!. +itrace:- if_thread_main(trace),!. +ibreak:- if_thread_main(((trace,break))). +%recolor(_,_):- ibreak. + +%tc_arg(N,C,E):- compound(C),!,arg(N,C,E). +tc_arg(N,C,E):- catch(arg(N,C,E),Err, + /*unrepress_output*/((bt,fbug(tc_arg(N,C,E)=Err),((tracing->true;trace),break,arg(N,C,E))))). + + + + + + +compound_name_arg(G,MD,Goal):- var(G),!,atom(MD),G=..[MD,Goal]. +compound_name_arg(G,MD,Goal):- compound(G),!, compound_name_arguments(G,MD,[Goal]). + + +:- multifile(user:message_hook/3). +:- dynamic(user:message_hook/3). +%user:message_hook(Term, Kind, Lines):- error==Kind, itrace,fbug(user:message_hook(Term, Kind, Lines)),trace,fail. +user:message_hook(Term, Kind, Lines):- error==Kind, fbug(user:message_hook(Term, Kind, Lines)),fail. + +:- meta_predicate(must_det_ll(0)). +:- meta_predicate(must_det_ll1(1,0)). +:- meta_predicate(md_failed(1,0)). +:- meta_predicate(must_not_error(0)). +%:- meta_predicate(must_det_l(0)). + +%:- no_xdbg_flags. +:- meta_predicate(wno_must(0)). + +wno_must(G):- locally(nb_setval(no_must_det_ll,t),locally(nb_setval(cant_rrtrace,t),call(G))). + +md_maplist(_MD,_,[]):-!. +md_maplist(MD,P1,[H|T]):- call(MD,call(P1,H)), md_maplist(MD,P1,T). + +md_maplist(_MD,_,[],[]):-!. +md_maplist(MD,P2,[HA|TA],[HB|TB]):- call(MD,call(P2,HA,HB)), md_maplist(MD,P2,TA,TB). + +md_maplist(_MD,_,[],[],[]):-!. +md_maplist(MD,P3,[HA|TA],[HB|TB],[HC|TC]):- call(MD,call(P3,HA,HB,HC)), md_maplist(MD,P3,TA,TB,TC). + +%must_det_ll(G):- !, once((/*notrace*/(G)*->true;md_failed(P1,G))). + +%:- if( \+ current_predicate(must_det_ll/1)). +must_det_ll(X):- tracing,!,once(X). +must_det_ll(X):- md(once,X). +%:- endif. + +md(P1,G):- tracing,!, call(P1,G). % once((call(G)*->true;md_failed(P1,G))). +md(P1,G):- remove_must_det(MD), wraps_each(MD,P1),!,call(G). +md(P1,G):- never_rrtrace,!, call(P1,G). +md(P1,G):- /*notrace*/(arc_html),!, ignore(/*notrace*/(call(P1,G))),!. +%md(P1,X):- !,must_not_error(X). +md(P1,(X,Goal)):- is_trace_call(X),!,call((itrace,call(P1,Goal))). +md(_, X):- is_trace_call(X),!,itrace. +md(P1, X):- nb_current(no_must_det_ll,t),!,call(P1,X). +md(P1,X):- \+ callable(X), !, throw(md_not_callable(P1,X)). +md(P1,(A*->X;Y)):- !,(must_not_error(A)*->md(P1,X);md(P1,Y)). +md(P1,(A->X;Y)):- !,(must_not_error(A)->md(P1,X);md(P1,Y)). +md(P1,(X,Cut)):- (Cut==(!)),md(P1,X),!. +md(MD,maplist(P1,List)):- !, call(MD,md_maplist(MD,P1,List)). +md(MD,maplist(P2,ListA,ListB)):- !, call(MD,md_maplist(MD,P2,ListA,ListB)). +md(MD,maplist(P3,ListA,ListB,ListC)):- !, call(MD,md_maplist(MD,P3,ListA,ListB,ListC)). +md(P1,(X,Cut,Y)):- (Cut==(!)), !, (md(P1,X),!,md(P1,Y)). +md(P1,(X,Y)):- !, (md(P1,X),md(P1,Y)). +%md(P1,X):- /*notrace*/(ncatch(X,_,fail)),!. +%md(P1,X):- conjuncts_to_list(X,List),List\=[_],!,maplist(must_det_ll,List). +md(_,must_det_ll(X)):- !, must_det_ll(X). +md(_,grid_call(P2,I,O)):- !, must_grid_call(P2,I,O). +%md(P1,call(P2,I,O)):- !, must_grid_call(P2,I,O). +%md(P1,(X,Y,Z)):- !, (md(P1,X)->md(P1,Y)->md(P1,Z)). +%md(P1,(X,Y)):- !, (md(P1,X)->md(P1,Y)). +%md(P1,if_t(X,Y)):- !, if_t(must_not_error(X),md(P1,Y)). +md(P1,forall(X,Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). +md(P1,\+ (X, \+ Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). + +md(P1,(X;Y)):- !, ((must_not_error(X);must_not_error(Y))->true;md_failed(P1,X;Y)). +md(P1,\+ (X)):- !, (\+ must_not_error(X) -> true ; md_failed(P1,\+ X)). +%md(P1,(M:Y)):- nonvar(M), !, M:md(P1,Y). +md(P1,X):- + ncatch(must_det_ll1(P1,X), + md_failed(P1,G,N), % <- ExceptionTerm + % bubble up and start running + ((M is N -1, M>0)->throw(md_failed(P1,G,M));(ugtrace(X),throw('$aborted')))),!. +%must_det_ll(X):- must_det_ll1(P1,X),!. + +must_det_ll1(P1,X):- tracing,!,must_not_error(call(P1,X)),!. +must_det_ll1(P1,once(A)):- !, once(md(P1,A)). +must_det_ll1(P1,X):- + strip_module(X,M,P),functor(P,F,A),setup_call_cleanup(nop(trace(M:F/A,+fail)),(must_not_error(call(P1,X))*->true;md_failed(P1,X)), + nop(trace(M:F/A,-fail))),!. + +ugtrace(_):- option_value(testing,true),!, give_up(5). +ugtrace(G):- notrace,trace,rtrace(G). +%ugtrace(G):- ggtrace(G). + +%must_not_error(G):- must(once(G)). + +must_not_error(G):- (tracing;never_rrtrace),!,call(G). +must_not_error(G):- notrace(is_cgi),!, ncatch((G),E,((u_dmsg(E=G)))). +%must_not_error(X):- is_guitracer,!, call(X). +%must_not_error(G):- !, call(G). +must_not_error(X):- !,ncatch(X,E,(fbug(E=X),ugtrace(X))). +must_not_error(X):- ncatch(X,E,(rethrow_abort(E);(/*arcST,*/writeq(E=X),pp(etrace=X), + trace, + rrtrace(visible_rtrace([-all,+exception]),X)))). + +always_rethrow(E):- never_rrtrace,!,throw(E). +always_rethrow('$aborted'). +always_rethrow(md_failed(_,_,_)). + +%catch_non_abort(Goal):- cant_rrtrace(Goal). +catch_non_abort(Goal):- catch(cant_rrtrace(Goal),E,rethrow_abort(E)),!. +rethrow_abort(E):- format(user_error,'~N~q~n',[catch_non_abort_or_abort(E)]),fail. +%rethrow_abort(time_limit_exceeded):-!. +rethrow_abort('$aborted'):- !, throw('$aborted'),!,forall(between(1,700,_),sleep(0.01)),writeln(timeout),!,fail. +rethrow_abort(E):- ds,!,format(user_error,'~N~q~n',[catch_non_abort(E)]),!. + +cant_rrtrace(Goal):- never_rrtrace,!,call(Goal). +cant_rrtrace(Goal):- setup_call_cleanup(cant_rrtrace,Goal,can_rrtrace). + +main_debug:- main_thread,current_prolog_flag(debug,true). +cant_rrtrace:- nb_setval(cant_rrtrace,t). +can_rrtrace:- nb_setval(cant_rrtrace,f). +%md_failed(P1,X):- predicate_property(X,number_of_clauses(1)),clause(X,(A,B,C,Body)), (B\==!),!,must_det_ll(A),must_det_ll((B,C,Body)). +md_failed(P1,G):- never_rrtrace,!,notrace,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). +md_failed(_P1,_G):- option_value(testing,true),!,give_up(6). +md_failed(_,_):- never_rrtrace,!,fail. +md_failed(P1,G):- tracing,/*notrace*/(u_dmsg(md_failed(P1,G))),!,fail. +md_failed(P1,G):- main_debug,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). +md_failed(P1,G):- is_cgi,!, u_dmsg(arc_html(md_failed(P1,G))). +md_failed(P1,X):- notrace,is_guitracer,u_dmsg(failed(X))/*,arcST*/,nortrace,atrace, call(P1,X). +md_failed(P1,X):- + u_dmsg(failed(P1,X))/*,arcST*/,nortrace,atrace, + trace,visible_rtrace([-all,+fail,+call,+exception],X). +% must_det_ll(X):- must_det_ll(X),!. + +:- meta_predicate(rrtrace(0)). +rrtrace(X):- rrtrace(etrace,X). +give_up(_):- throw('$aborted'). + +is_guitracer:- getenv('DISPLAY',_), current_prolog_flag(gui_tracer,true). +:- meta_predicate(rrtrace(1,0)). +rrtrace(P1,X):- never_rrtrace,!,nop((u_dmsg(cant_rrtrace(P1,X)))),!,fail. +rrtrace(P1,G):- is_cgi,!, u_dmsg(arc_html(rrtrace(P1,G))),call(P1,G). +rrtrace(P1,X):- notrace, \+ is_guitracer,!,nortrace, /*arcST, sleep(0.5), trace,*/ + (notrace(\+ current_prolog_flag(gui_tracer,true)) -> call(P1,X); (itrace,call(P1,X))). +%rrtrace(_,X):- is_guitracer,!,notrace,nortrace,ncatch(call(call,ugtrace),_,true),atrace,call(X). +rrtrace(P1,X):- itrace,!, call(P1,X). + +:- meta_predicate(arc_wote(0)). +arc_wote(G):- with_pp(ansi,wote(G)). +arcST:- itrace,arc_wote(bts),itrace. +atrace:- arc_wote(bts). +%atrace:- ignore((stream_property(X,file_no(2)), with_output_to(X,dumpST))),!. + +:- meta_predicate(odd_failure(0)). +odd_failure(G):- never_rrtrace,!,call(G). +odd_failure(G):- wno_must(G)*->true;fail_odd_failure(G). + +:- meta_predicate(fail_odd_failure(0)). +fail_odd_failure(G):- u_dmsg(odd_failure(G)),rtrace(G), fail. +%fail_odd_failure(G):- call(G)*->true;(u_dmsg(odd_failure(G)),fail,rrtrace(G)). + + +bts:- + ensure_loaded(library(prolog_stack)), + prolog_stack:export(prolog_stack:get_prolog_backtrace_lc/3), + use_module(library(prolog_stack),[print_prolog_backtrace/2,get_prolog_backtrace_lc/3]), + /*notrace*/(prolog_stack:call(call,get_prolog_backtrace_lc,8000, Stack, [goal_depth(600)])), + stream_property(S,file_no(1)), prolog_stack:print_prolog_backtrace(S, Stack), + ignore((fail, current_output(Out), \+ stream_property(Out,file_no(1)), print_prolog_backtrace(Out, Stack))),!. + +my_assertion(G):- my_assertion(call(G),G). + +my_assertion(_,G):- call(G),!. +my_assertion(Why,G):- u_dmsg(my_assertion(Why,G)),writeq(Why=goal(G)),nl,!,ibreak. + +must_be_free(Free):- plain_var(Free),!. +must_be_free(Free):- \+ nonvar_or_ci(Free),!. +must_be_free(Nonfree):- arcST,u_dmsg(must_be_free(Nonfree)), + ignore((attvar(Nonfree),get_attrs(Nonfree,ATTS),pp(ATTS))),ibreak,fail. + +must_be_nonvar(Nonvar):- nonvar_or_ci(Nonvar),!. +must_be_nonvar(IsVar):- arcST,u_dmsg(must_be_nonvar(IsVar)),ibreak,fail. + + +% goal_expansion(must_det_l(G),I,must_det_ll(G),O):- nonvar(I),source_location(_,_), nonvar(G),I=O. + +%goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), compound(G), remove_mds(MD,G,GG),I=O. + +%:- system:ensure_loaded(library(pfc_lib)). +%:- expects_dialect(pfc). +/* +goal_expansion(Goal,Out):- compound(Goal), tc_arg(N1,Goal,E), + compound(E), E = set(Obj,Member), setarg(N1,Goal,Var), + expand_goal((Goal,b_set_dict(Member,Obj,Var)),Out). +*/ +get_setarg_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_setarg_p2(P3,E,Cmpd,SA). +get_setarg_p2(P3,E,Cmpd,SA):- arg(N1,Cmpd,E), SA=call(P3,N1,Cmpd). +get_setarg_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_setarg_p1(P3,E,Arg,SA). + +my_b_set_dict(Member,Obj,Var):- set_omemberh(b,Member,Obj,Var). +%nb_set_dict(Member,Obj,Var), +set_omemberh(_,Member,Obj,Var):- !, arc_setval(Obj,Member,Var). +%nb_link_dict(Member,Obj,Var), +%set_omemberh(nb,Member,Obj,Var):- !, nb_set_dict(Member,Obj,Var). +%set_omemberh(link,Member,Obj,Var):- !, nb_link_dict(Member,Obj,Var). +%set_omemberh(How,Member,Obj,Var):- call(call,How,Member,Obj,Var),!. + +set_omember(Member,Obj,Var):- set_omember(b,Member,Obj,Var). + +set_omember(How,Member,Obj,Var):- + must_be_nonvar(Member), must_be_nonvar(Obj), must_be_nonvar(How), !, + set_omemberh(How,Member,Obj,Var),!. + + + +get_kov(K,O,V):- dictoo:is_dot_hook(user,O,K,V),!,o_m_v(O,K,V). +get_kov(K,O,V):- ((get_kov1(K,O,V)*->true;(get_kov1(props,O,VV),get_kov1(K,VV,V)))). + +get_kov1(K,O,V):- (is_hooked_obj(O),o_m_v(O,K,V))*->true;get_kov2(K,O,V). +% (get_kov(Prop,VM,Value) -> true ; (get_kov(props,VM,Hashmap),nonvar(Hashmap),must_not_error(nb_get_value(Hashmap,Prop,ValueOOV)),get_oov_value(ValueOOV,Value))). +get_kov2(K,O,V):- is_dict(O),!,get_dict(K,O,OOV),get_oov_value(OOV,V). +get_kov2(K,O,V):- nonvar(K),is_rbtree(O),!,rb_lookup(K,V,O). +get_kov2(K,O,V):- is_rbtree(O),!,rb_in(K,V,OOV),get_oov_value(OOV,V). +%get_kov(K,O,V):- is_rbtree(O),!,nb_rb_get_node(K,O,Node),nb_rb_node_value(Node,V). + +get_oov_value(ValueOOV,Value):- compound(ValueOOV),ValueOOV=oov(Value),!. +get_oov_value(Value,Value). + + +term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,O),I\=@=O,!. +term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,M),I\=@=M,!,term_expansion_setter(M,O). +term_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). + +term_expansion_setter((Head:-Body),Out):- + get_setarg_p1(setarg,I,Head,P1), is_setter_syntax(I,Obj,Member,Var,How), + call(P1,Var), + BodyCode = (Body, set_omember(How,Member,Obj,Var)), + % goal_expansion_setter(BodyCode,Goal), + expand_term((Head:- BodyCode),Out),!. + +%term_expansion_setter((Head:-Body),(Head:-GBody)):- goal_expansion_setter(Body,GBody),!. + +:- export(term_expansion_setter/2). +:- system:import(term_expansion_setter/2). + +%goal_expansion(Goal,'.'(Training, Objs, Obj)):- Goal = ('.'(Training, Objs, A), Obj = V), var(Obj). + +is_setter_syntax(I,_Obj,_Member,_Var,_):- \+ compound(I),!,fail. +is_setter_syntax(set(Obj,Member),Obj,Member,_Var,b). +is_setter_syntax(gset(Obj,Member),Obj,Member,_Var,nb). +is_setter_syntax(hset(How,Obj,Member),Obj,Member,_Var,How). +is_setter_syntax(set(ObjMember),Obj,Member,_Var,b):- obj_member_syntax(ObjMember,Obj,Member). +is_setter_syntax(gset(ObjMember),Obj,Member,_Var,nb):- obj_member_syntax(ObjMember,Obj,Member). +is_setter_syntax(hset(How,ObjMember),Obj,Member,_Var,How):- obj_member_syntax(ObjMember,Obj,Member). + +obj_member_syntax(ObjMember,Obj,Member):-compound(ObjMember), compound_name_arguments(ObjMember,'.',[Obj,Member]),!. + +maybe_expand_md(_MD,I,_):- \+ compound(I),!,fail. +%maybe_expand_md(MD,I,_):- compound(I),!,fail. % THIS DISABLES +% THIS DISABLES +%maybe_expand_md(MD,must_det_ll(GoalL),GoalL):-!. +maybe_expand_md(MD,MDGoal,GoalLO):- compound_name_arg(MDGoal,MD,Goal),!, expand_md(MD,Goal,GoalLO). +maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, + expand_md(MD,GoalL,GoalLO). +maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, + expand_md(MD,GoalL,GoalLO). +maybe_expand_md(MD,I,O):- sub_term(C,I),compound(C), compound_name_arg(C,MD,Goal), + compound(Goal),Goal=(_,_), + once((expand_md(MD,Goal,GoalO),substM(I,C,GoalO,O))),I\=@=O. + + +%maybe_expand_md(MD,I,O):- sub_term(S,I),compound(S),S=must_det_ll(G), +% once(expand_md(MD,S,M)),M\=S, + + + +expand_md(_MD,Nil,true):- Nil==[],!. +expand_md(_MD,Var,Var):- \+ callable(Var),!. +expand_md(MD,[A|B],(AA,BB)):- assertion(callable(A)), assertion(is_list(B)), !, + expand_md1(MD,A,AA), expand_md(MD,B,BB). +expand_md(MD,A,AA):- !, expand_md1(MD,A,AA). + +prevents_expansion(A):- is_trace_call(A). +is_trace_call(A):- A == trace. +is_trace_call(A):- A == itrace. + +skip_expansion(A):- var(A),!,fail. +skip_expansion(!). +skip_expansion(false). +skip_expansion(true). +skip_expansion(C):- compound(C),functor(C,F,A),skip_fa_expansion(F,A). +skip_fa_expansion(once,1). +skip_fa_expansion(call,_). +skip_fa_expansion(if_t,2). + +expand_md1(_MD,Var,Var):- \+ callable(Var),!. +expand_md1(_MD,Cut,Cut):- skip_expansion(Cut),!. +expand_md1(MD,MDAB, AABB):- compound(MDAB), compound_name_arg(MDAB,MD,AB),!, expand_md(MD,AB,AABB). +expand_md1(MD,maplist(P1,A),md_maplist(MD,P1,A)):-!. +expand_md1(MD,maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. +expand_md1(MD,maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. +expand_md1(MD,my_maplist(P1,A),md_maplist(MD,P1,A)):-!. +expand_md1(MD,my_maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. +expand_md1(MD,my_maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. +%expand_md1(MD,Goal,O):- \+ compound(Goal), !,O = must_det_ll(Goal). +%expand_md1(MD,(A,B),((A,B))):- remove_must_det(MD), prevents_expansion(A),!. +%expand_md1(MD,(A,B),must_det_ll((A,B))):- prevents_expansion(A),!. +expand_md1(MD,(A,B),(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). +expand_md1(MD,(C*->A;B),(CC*->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). +expand_md1(MD,(C->A;B),(CC->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). +expand_md1(MD,(C;B),(CC;BB)):- !, expand_md(MD,B,BB), expand_must_not_error(C,CC). + +expand_md1(MD,locally(C,A),locally(C,AA)):- !, expand_md(MD,A,AA). + +expand_md1(MD,call_cleanup(A,B),call_cleanup(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). +expand_md1(MD,setup_call_cleanup(C,A,B),setup_call_cleanup(CC,AA,BB)):- !, + expand_md(MD,C,CC),expand_md(MD,A,AA), expand_md(MD,B,BB). + +expand_md1(MD,M:P, M:AABB):-!,expand_md(MD,P, AABB). + +expand_md1(MD,P, AABB) :- predicate_property(P,(meta_predicate( MP ))), + strip_module(P,_,SP),strip_module(MP,_,SMP), kaggle_arc_1_pred(_,SP), + \+ skippable_built_in(P), + SP=..[F|Args],SMP=..[F|Margs],!, + maplist(expand_meta_predicate_arg(MD),Margs,Args,EArgs), + AABB=..[F|EArgs]. + +expand_md1(MD, A, MDAA):- \+ remove_must_det(MD), !, expand_goal(A,AA),!,compound_name_arg(MDAA,MD,AA). +expand_md1(_MD, A, AA):- expand_goal(A,AA),!. + +expand_must_not_error(C,C):- remove_must_det(must_not_error),!. +expand_must_not_error(C,CC):- \+ predicate_property(C,meta_predicate(_)),!, CC = must_not_error(C),!. +expand_must_not_error(C,CC):- expand_md(must_not_error, C, CC). + +kaggle_arc_1_pred(M,P):- + predicate_property(M:P,file(F)), + \+ predicate_property(M:P,imported_from(_)), + \+ \+ atom_contains(F,'arc_'), + \+ atom_contains(F,'_pfc'), + \+ atom_contains(F,'_afc'), + % \+ atom_contains(F,'_ui_'), + true. + +%meta_builtin(P):- var(P),meta_builtin(P). +%meta_builtin(P):- predicate_property(P,interpreted),predicate_property(P,static). +skippable_built_in(MP):- strip_module(MP,_,P), predicate_property(system:P,built_in), + once(predicate_property(system:P,iso);predicate_property(system:P,notrace)). +%meta_builtin(P):- predicate_property(P,/*notrace*/), \+ predicate_property(P,nodebug). + +expand_meta_predicate_arg(_MD,'?',A,A):-!. +expand_meta_predicate_arg(_MD,'+',A,A):-!. +expand_meta_predicate_arg(_MD,'-',A,A):-!. +expand_meta_predicate_arg(MD, ':',A,AA):- !,expand_md1(MD,A,AA). +expand_meta_predicate_arg(MD, 0,A,AA):- !,expand_md1(MD,A,AA). +%expand_meta_predicate_arg(MD,*,A,AA):- !,expand_md1(MD,A,AA). +expand_meta_predicate_arg(_MD,_,A,A). + +goal_expansion_getter(Goal,O):- \+ compound(Goal), !,O = Goal. +goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. +goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_getter(M,O). +goal_expansion_getter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). +goal_expansion_getter(Goal,Out):- + compound_name_arguments(Goal,F,Args), + maplist(goal_expansion_getter,Args,ArgsOut), + compound_name_arguments(Out,F,ArgsOut). + +:- export(goal_expansion_getter/2). +:- system:import(goal_expansion_getter/2). + + +goal_expansion_setter(Goal,_):- \+ compound(Goal), !, fail. + + +goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. +goal_expansion_setter(G,GO):- remove_must_det(MD), !,remove_mds(MD,G,GG),goal_expansion_setter(GG,GO). +%goal_expansion_setter(GG,GO):- remove_must_det(MD), sub_term(G,GG),compound(G),G = must_det_ll(GGGG),subst001(GG,G,GGGG,GGG),!,goal_expansion_setter(GGG,GO). +%goal_expansion_setter((G1,G2),(O1,O2)):- !, expand_goal(G1,O1), expand_goal(G2,O2),!. +goal_expansion_setter(set_omember(A,B,C,D),set_omember(A,B,C,D)):-!. +goal_expansion_setter(set_omember(A,B,C),set_omember(b,A,B,C)):-!. +goal_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), + compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). +goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_setter(M,O). + + +goal_expansion_setter(Goal,Out):- + predicate_property(Goal,meta_predicate(_)),!,fail, + tc_arg(N1,Goal,P), goal_expansion_setter(P,MOut), + setarg(N1,Goal,MOut), !, expand_goal(Goal, Out). + +goal_expansion_setter(Goal,Out):- + tc_arg(N1,Goal,P), is_setter_syntax(P,Obj,Member,Var,How), + setarg(N1,Goal,Var), !, expand_goal((Goal,set_omember(How,Member,Obj,Var)), Out). + +goal_expansion_setter(Goal,Out):- + get_setarg_p1(setarg,I,Goal,P1), compound(I), compound_name_arguments(I,'.',[ Self, Func, Value]), + call(P1,get_kov(Func,Self,Value)),!, + expand_goal(Goal,Out). + +goal_expansion_setter(Goal,Out):- + get_setarg_p1(setarg,I,Goal,P1), is_setter_syntax(I,Obj,Member,Var,How), + call(P1,Var),!, + expand_goal((Goal,set_omember(How,Member,Obj,Var)),Out). + +:- export(goal_expansion_setter/2). +:- system:import(goal_expansion_setter/2). + + +/* +system:term_expansion((Head:-Goal),I,(Head:-Out),O):- nonvar(I), compound(Goal), + goal_expansion_setter(Goal,Out),Goal\=@=Out,I=O,!, + nop((print(goal_expansion_getter(Goal-->Out)),nl)). +*/ +arc_term_expansion1((system:term_expansion((Head:-Body),I,Out,O):- + nonvar(I), compound(Head), + term_expansion_setter((Head:-Body),Out),(Head:-Body)=In,In\==Out,I=O,!, + nop((print(term_expansion_setter(In-->Out)),nl)))). + + +%system:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, +% ((print(goal_expansion_getter(Goal-->Out)),nl)). + +%user:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, +% ((print(goal_expansion_getter(Goal-->Out)),nl)). + +arc_term_expansion1((goal_expansion(Goal,I,Out,O):- + goal_expansion_setter(Goal,Out),Goal\==Out,I=O,!, + nop((print(goal_expansion_setter(Goal-->Out)),nl)))). + +:- export(arc_term_expansions/1). +arc_term_expansions(H:- (current_prolog_flag(arc_term_expansion, true), B)):- + arc_term_expansion1(H:-B). + +:- export(enable_arc_expansion/0). +enable_arc_expansion:- + forall(arc_term_expansions(Rule), + (strip_module(Rule,M,Rule0), + nop(u_dmsg(asserta_if_new(Rule,M,Rule0))), + asserta_if_new(Rule))), + set_prolog_flag(arc_term_expansion, true). + +:- export(disable_arc_expansion/0). +disable_arc_expansion:- + forall(arc_term_expansions(Rule),forall(retract(Rule),true)), + set_prolog_flag(arc_term_expansion, false). + +:- multifile(goal_expansion/4). +:- dynamic(goal_expansion/4). + +goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), + compound(G), + (remove_must_det(MD)->remove_mds(MD,G,GG);(md_like(MD),maybe_expand_md(MD,G,GG))),I=O. + + + + + + + + + + + +/* +:- export(plain_var/1). +plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). + +my_assertion(G):- call(G),!. +my_assertion(G):- fbug(my_assertion(G)),writeq(goal(G)),nl,!,break. +must_be_free(AllNew):- plain_var(AllNew),!. +must_be_free(AllNew):- arcST,fbug(must_be_free(AllNew)),break,fail. +must_be_nonvar(AllNew):- nonvar_or_ci(AllNew),!. +must_be_nonvar(AllNew):- arcST,fbug(must_be_nonvar(AllNew)),break,fail. + +my_len(X,Y):- var(X),!,length(X,Y). +my_len(X,Y):- is_list(X),!,length(X,Y). +my_len(X,Y):- functor([_|_],F,A),functor(X,F,A),!,length(X,Y). +my_len(X,Y):- arcST,!,ibreak. +*/ +is_map(G):- is_vm_map(G),!. +%arc_webui:- false. +sort_safe(I,O):- catch(sort(I,O),_,I=O). +my_append(A,B):- append(A,B). +my_append(A,B,C):- append(A,B,C). +with_tty_false(Goal):- with_set_stream(current_output,tty(false),Goal). +with_tty_true(Goal):- with_set_stream(current_output,tty(true),Goal). + +% Count occurrences of G and store the result in N +count_of(G,N):- findall_vset(G,G,S),length(S,N). +findall_vset(T,G,S):- findall(T,G,L),variant_list_to_set(L,S). +flatten_objects(Objs,ObjsO):- flatten([Objs],ObjsO),!. + + +var_e(E,S):- E==S,!. +var_e(E,S):- (nonvar(E);attvar(E)),!,E=@=S. + +variant_list_to_set([E|List],Out):- select(S,List,Rest),var_e(E,S),!, variant_list_to_set([E|Rest],Out). +variant_list_to_set([E|List],[E|Out]):- !, variant_list_to_set(List,Out). +variant_list_to_set(H,H). + +nb_subst(Obj,New,Old):- + get_setarg_p1(nb_setarg,Found,Obj,P1),Found=@=Old, + p1_call(P1,New),!,nb_subst(Obj,New,Old). +nb_subst(_Obj,_New,_Old). + +system:any_arc_files(Some):- is_list(Some),!, Some\==[],maplist(any_arc_files,Some). +system:any_arc_files(Some):- atom_contains(Some,'arc'). + +:- thread_local(in_memo_cached/5). +:- multifile(prolog:make_hook/2). +:- dynamic(prolog:make_hook/2). +prolog:make_hook(before, Some):- any_arc_files(Some), forall(muarc:clear_all_caches,true). + +:- multifile(muarc:clear_all_caches/0). +:- dynamic(muarc:clear_all_caches/0). +muarc:clear_all_caches:- \+ luser_getval(extreme_caching,true), retractall(in_memo_cached(_,_,_,_,_)), fail. +%arc_memoized(G):- !, call(G). + +arc_memoized(G):- compound(G),ground(G),functor(G,F,1),functor(C,F,1),!,arc_memoized(C),G=C,!. +arc_memoized(G):- + copy_term(G,C,GT), + (Key = (C+GT)), + (in_memo_cached(Key,C,track,started,Info)->throw(already_memoizing(in_memo_cached(Key,C,track,started,Info))) ; true), + numbervars(Key,0,_,[attvar(bind),singletons(true)]),!, + setup_call_cleanup((asserta(in_memo_cached(Key,C,track,started,_),Started)), + catch( + (in_memo_cached(Key,C,GT,Found,AttGoals)*->(G=Found,maplist(call,AttGoals)) + ; ((call(G),copy_term(G,CG,GG)) *->asserta(in_memo_cached(Key,C,GT,CG,GG)) + ;asserta(in_memo_cached(Key,C,GT,failed,_)))), + E, (retractall(in_memo_cached(Key,C,GT,_,_)),throw(E))),erase(Started)). + +set_nth1(1,[_|Row],E,[E|Row]):-!. +set_nth1(N,[W|Row],E,[W|RowMod]):- Nm1 is N-1, set_nth1(Nm1,Row,E,RowMod). + +findall_count(T,G,N):- findall_set(T,G,S),length(S,N). + +findall_set(T,G,S):- findall(T,G,L),list_to_set(L,S). + +make_list_inited(0,_,[]):-!. +make_list_inited(1,E,[E]):-!. +make_list_inited(N,E,[E|List]):- Nm1 is N -1,make_list_inited(Nm1,E,List). + +nth_fact(P,I):- clause(P,true,Ref),nth_clause(P,I,Ref). + +nonvar_or_ci(C):- (nonvar(C);attvar(C)),!. + +add_i(Info):- + quietly((tersify(Info,InfoT), + luser_getval(test_rules,TRules), + luser_getval(pair_rules,PRules), + nb_set_add(TRules,InfoT), + nb_set_add(PRules,InfoT), + nop(pp(cyan,+InfoT)))). + +add_i(F,Info):- + append_term(i(F),Info,FInfo), + add_i(FInfo). + +add_rule(Info):- add_i(rule,Info). +add_cond(Info):- add_i(cond,Info). +%do_action(Info):- guess_pretty(Info),add_i(action,Info),call(Info). +do_action(Call):- !, copy_term(Call,Info),call(Call),add_i(action,Info). +add_action(Info):- add_i(action,Info). +add_note(Info):- add_i(note,Info). +add_indiv(W,Info):- add_i(indiv(W),Info). +add_comparitor(Info):- add_i(comparitor,Info). +show_rules:- + luser_getval(pair_rules,PRules), maplist(pp(cyan),PRules), + luser_getval(test_rules,TRules), maplist(pp(blue),TRules), + !. + + +sub_atom_value(TestID,A):- sub_term(A,TestID),(atom(A);string(A)). + +my_list_to_set(List, Set):- my_list_to_set(List, (=) ,Set). +my_list_to_set_variant(List, Set):- my_list_to_set(List, (=@=) ,Set). +my_list_to_set_cmp(List, Set):- my_list_to_set(List, (=@=) ,Set). + +my_list_to_set([E|List],P2, Set):- select(C,List,Rest), p2_call(P2, E,C), !, my_list_to_set([E|Rest],P2, Set). +my_list_to_set([E|List],P2, [E|Set]):-!, my_list_to_set(List,P2, Set). +my_list_to_set([],_,[]). + +my_list_to_set_cmp([E|List],C3, Set):- select(C,List,Rest), call(C3,R,E,C), + R== (=), my_list_to_set_cmp([C|Rest],C3, Set),!. + my_list_to_set_cmp([E|List],C3, [E|Set]):-!, my_list_to_set_cmp(List,C3, Set). +my_list_to_set_cmp([],_,[]). + + +contains_nonvar(N,Info):- sub_term(E,Info),nonvar_or_ci(E),E=N,!. + +max_min(A,B,C,D):- must_be_free(C),must_be_free(D),max_min0(A,B,C,D). +max_min0(A,B,B,B):- plain_var(A). +max_min0(A,B,A,A):- plain_var(B),!. +max_min0(A,B,C,D):- number(A),number(B), !, ((A > B) -> (C=A, D=B) ; (C=B, D=A)). +max_min0(_,A,A,A):- number(A),!. +max_min0(A,_,A,A):- number(A),!. +max_min0(_,_,_,_). + +as_debug(L,G):- as_debug(L,true,G). +as_debug(9,_,_):- !. +as_debug(_,C,G):- ignore(catch((call(C)->wots(S,G),format('~NDEBUG: ~w~N',[S]);true),_,true)). + +shall_count_as_same(A,B):- same_term(A,B),!. % unify ok_ok cmatch +shall_count_as_same(A,B):- plain_var(A),!,A==B. +shall_count_as_same(A,B):- atomic(A),!, A=@=B. +shall_count_as_same(A,B):- var(B),!,A=@=B. +shall_count_as_same(A,B):- A=@=B,!. +shall_count_as_same(A,B):- copy_term(B,CB),copy_term(A,CA),\+ \+ ( A=B, B=@=CB, A=@=CA),!. +%shall_count_as_same(A,B):- \+ A \= B, !. + +count_each([C|L],GC,[Len-C|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),!,count_each(L,GC,LL). +count_each([],_,[]). + +count_each_inv([C|L],GC,[C-Len|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),count_each_inv(L,GC,LL). +count_each_inv([],_,[]). + +maplist_n(N,P,[H1|T1]):- + p2_call(P,N,H1), N1 is N+1, + maplist_n(N1,P,T1). +maplist_n(_N,_P,[]). + +maplist_n(N,P,[H1|T1],[H2|T2]):- + call(P,N,H1,H2), N1 is N+1, + maplist_n(N1,P,T1,T2). +maplist_n(_N,_P,[],[]). + +/* +print_points_grid(Points):- + points_range(Points, LoH, LoV, HiH, HiV, H, V), writeqln(size_range(LoH, LoV, HiH, HiV, H, V)), points_to_grid(Points, Grid), print_grid(Grid). + +print_points_grid(Grid):- + points_range(Grid, LoH, LoV, HiH, HiV, _H, _V), print_grid(Grid, LoH, LoV, HiH, HiV, Grid). +*/ + + +%print_trainer:- kaggle_arc_train(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). +%print_evaler:- kaggle_arc_eval(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). + + /* +% data looks like + +kaggle_arc_train('007bbfb7', trn, [[0, 7, 7], [7, 7, 7], [0, 7, 7]], [[0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [7, 7, 7, 7, 7, 7, 7, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7]]). +kaggle_arc_train('007bbfb7', trn, [[4,0, 4], [0,0,0], [0, 4,0]], [[4,0, 4,0,0,0, 4,0, 4], [0,0,0,0,0,0,0,0,0], [0, 4,0,0,0,0,0, 4,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 4,0, 4,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 4,0,0,0,0]]). +kaggle_arc_train('007bbfb7', trn, [[0,0,0], [0,0, 2], [2,0, 2]], [[0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 2], [0,0,0,0,0,0, 2,0, 2], [0,0,0,0,0,0,0,0,0], [0,0, 2,0,0,0,0,0, 2], [2,0, 2,0,0,0, 2,0, 2]]). +kaggle_arc_train('007bbfb7', trn, [[6, 6,0], [6,0,0], [0, 6, 6]], [[6, 6,0, 6, 6,0,0,0,0], [6,0,0, 6,0,0,0,0,0], [0, 6, 6,0, 6, 6,0,0,0], [6, 6,0,0,0,0,0,0,0], [6,0,0,0,0,0,0,0,0], [0, 6, 6,0,0,0,0,0,0], [0,0,0, 6, 6,0, 6, 6,0], [0,0,0, 6,0,0, 6,0,0], [0,0,0,0, 6, 6,0, 6, 6]]). +kaggle_arc_train('007bbfb7', trn, [[2, 2, 2], [0,0,0], [0, 2, 2]], [[2, 2, 2, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0, 2, 2,0, 2, 2,0, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 2, 2,0, 2, 2]]). +kaggle_arc_train('007bbfb7', tst, [[7,0, 7], [7,0, 7], [7, 7,0]], [[7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7, 7,0, 7,0,0,0], [7,0, 7, 7,0, 7,0,0,0], [7, 7,0, 7, 7,0,0,0,0]]). + +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3,0, 3,0,0], [0,0, 3,0, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]], [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3, 4, 3,0,0], [0,0, 3, 4, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3,0, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3, 4, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3,0,0, 3,0, 3,0], [0,0,0, 3,0,0, 3, 3,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3, 4, 4, 3, 4, 3,0], [0,0,0, 3, 4, 4, 3, 3,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3,0,0, 3,0,0,0,0], [0,0, 3,0,0, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3,0, 3], [0,0,0, 3,0, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3, 4, 3], [0,0,0, 3, 4, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0,0, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 4, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). +kaggle_arc_train('00d62c1b', tst, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3,0,0,0,0, 3,0,0, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 4, 4, 4, 4, 3, 4, 4, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). +*/ +%tell(s), ignore((nl, nl, task_pairs(Name, ExampleNum, In, Out), format('~N~q.~n', [test_pairs_cache(Name, ExampleNum, In, Out)]), fail)), told. +map_pred(Pred, P, X) :- map_pred([],Pred, P, X). +%map_pred(NoCycles,_Pred, P, X) :- member(E,NoCycles), E==P,!, X = P. +map_pred(NoCycles,Pred, P, X) :- p2_call(Pred, P, X)*->true;map_pred0(NoCycles,Pred, P, X). + +map_pred1(Pred, P, P1) :- map_pred1(P, Pred, P, P1). + +map_pred0(_NoCycles,_Pred, Args, ArgSO) :- must_be_free(ArgSO), Args==[],!, ArgSO=[]. +map_pred0(_NoCycles, Pred, P, P1) :- p2_call(Pred, P, P1),!. % *->true;fail. +map_pred0(NoCycles,Pred, P, X) :- fail, attvar(P), !, %duplicate_term(P,X),P=X, + get_attrs(P,VS), map_pred([P|NoCycles],Pred, VS, VSX), P=X, put_attrs(X,VSX),!. +map_pred0(NoCycles,Pred, P, X):- map_pred1(NoCycles,Pred, P, X). + +map_pred1(_NoCycles,_Pred, P, P1) :- ( \+ compound(P) ; is_ftVar(P)), !, must_det_ll(P1=P), !. +% map_pred0(NoCycles,Pred, Args, ArgSO) :- is_list(Args), !, maplist(map_pred([Args|NoCycles],Pred), Args, ArgS), ArgS=ArgSO. +map_pred1(NoCycles,Pred, IO, OO) :- is_list(IO),!, maplist(map_pred(NoCycles,Pred), IO, OO). +map_pred1(NoCycles,Pred, IO, [O|ArgS]) :- IO= [I|Args], !, + map_pred([IO,ArgS|NoCycles],Pred, I, O), map_pred0([IO,I|NoCycles],Pred, Args, ArgS). +map_pred1(NoCycles,Pred, P, P1) :- + compound_name_arguments(P, F, Args), maplist(map_pred([P|NoCycles],Pred),Args,ArgS), compound_name_arguments(P1, F, ArgS). +%map_pred(_Pred, P, P). +/* +:- meta_predicate map_pred(2, ?, ?, ?, ?). +map_pred(Pred, P, X, Sk, P1) :- must_be_free(X), p2_call(Pred, P, X), !, must(Sk=P1), !. +map_pred(_Pred, P, _, _, P1) :- is_ftVar(P), !, must(P1=P), !. +map_pred(Pred, [P|Args], X, Sk, [P1|ArgS]) :- !, map_pred(Pred, P, X, Sk, P1), !, must(map_pred(Pred, Args, X, Sk, ArgS)), !. +map_pred(Pred, P, X, Sk, P1) :- compound(P), !, compound_name_arguments(P, F, Args), map_pred(Pred, [F|Args], X, Sk, [Fs|ArgS]), !, compound_name_arguments(P1, Fs, ArgS), !. +map_pred(_Pred, P, _, _, P). +*/ +is_cons(A):- compound(A),A=[_|_]. + +into_grid_or_var(G,G):- is_cons(G),!. +into_grid_or_var(G,G):- var(G),!. +into_grid_or_var(O,G):- cast_to_grid(O,G,_Uncast),!. + +maybe_mapgrid(P2,I,O):- is_grid(I),!,mapgrid(P2,I,O). +maybe_mapgrid(P3,I,O,M):- is_grid(I),!,mapgrid(P3,I,O,M). +maybe_mapgrid(P4,I,O,M,N):- is_grid(I),!,mapgrid(P4,I,O,M,N). + +mapgrid(P4,Grid,GridM,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridM,G2),into_grid_or_var(GridN,G3),into_grid_or_var(GridO,G4),mapg_list(P4,G1,G2,G3,G4). +mapg_list(P4,Grid,GridM,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P4),Grid,GridM,GridN,GridO). +mapg_list(P4,Grid,GridM,GridN,GridO):- call(P4,Grid,GridM,GridN,GridO),!. + +mapgrid(P3,Grid,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),into_grid_or_var(GridO,G3),mapg_list(P3,G1,G2,G3). +mapg_list(P3,Grid,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P3),Grid,GridN,GridO). +mapg_list(P3,Grid,GridN,GridO):- call(P3,Grid,GridN,GridO),!. + +mapgrid(P2, Grid,GridN):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),!,mapg_list(P2, G1,G2). +mapg_list(P2, Grid,GridN):- is_list(Grid),!,maplist(mapg_list(P2),Grid,GridN). +mapg_list(P2, Grid,GridN):- p2_call(P2, Grid,GridN),!. + +mapgrid(P1,Grid):- into_grid_or_var(Grid,G1),mapg_list(P1,G1). +mapg_list(P1,Grid):- is_list(Grid),!,maplist(mapg_list(P1),Grid). +mapg_list(P1,Grid):- p1_call(P1,Grid),!. + + +maplist_ignore(_3,H,I,J):- (H==[];I==[],J==[]),!,(ignore(H=[]),ignore(I=[]),ignore(J=[])). +maplist_ignore(P3,H,I,J):- \+ is_list(H),!, ignore(p2_call(call(P3,H),I,J)). +maplist_ignore(P3,[H|Grid],[I|GridN],[J|GridO]):- maplist_ignore(P3,H,I,J), !,maplist_ignore(P3,Grid,GridN,GridO). + +maplist_ignore(_2,H,I):- (H==[];I==[]),!,(ignore(H=[]),ignore(I=[])). +maplist_ignore(P2, H,I):- \+ is_list(H),!, ignore(p2_call(P2, H,I)). +maplist_ignore(P2, [H|Grid],[I|GridN]):- maplist_ignore(P2, H,I), !,maplist_ignore(P2, Grid,GridN). + +%p1_or(P1,Q1,E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). + +p1_call((P1;Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). +p1_call((P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). +p1_call(or(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). +p1_call(and(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). +p1_call(not(not(P1)),E):- !, \+ \+ p1_call(P1,E). +p1_call(not(P1),E):- !, not(p1_call(P1,E)). +p1_call(once(P1),E):- !, once(p1_call(P1,E)). +p1_call(ignore(P1),E):- !, ignore(p1_call(P1,E)). +p1_call(chk(P1),E):- !, \+ \+ (p1_call(P1,E)). +p1_call( \+ (P1),E):- !, \+ p1_call(P1,E). +p1_call(P1,E):- !, call(P1,E). + +chk(X,E):- \+ \+ call(X,E). + +p2_call_p2(P2a,P2b,A,B):- p2_call(P2a,A,M),p2_call(P2b,M,B). + +p2_call(P2,A,B):- P2==[],!,A=B. +p2_call(p1_call(P1),E,O):- !, p1_call(P1,E), E=O. +p2_call([P2],Grid,GridN):- !, p2_call(P2, Grid,GridN). +p2_call([P2|P2L],Grid,GridN):- !, p2_call(P2, Grid,GridM),p2_call(P2L,GridM,GridN). +p2_call(ignore(P2),A,B):- p2_call(P2,A,B)*->true;A=B. +p2_call(type(Type,P2),A,B):- into_type(Type,A,AA),p2_call(P2,AA,B). +p2_call(or(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,B);p2_call(Q2,A,B)). +p2_call(and(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,AB),p2_call(Q2,AB,B)). +p2_call(P2,A,B):- must_be(callable,P2), call(P2,A,B). + + +p1_or(P1A,P1B,X):- p1_call(P1A,X)->true;p1_call(P1B,X). +p1_and(P1A,P1B,X):- p1_call(P1A,X),p1_call(P1B,X). +p1_not(P1,E):- \+ p1_call(P1,E). +p1_ignore(P1,E):- ignore(p1_call(P1,E)). +p1_arg(N,P1,E):- tc_arg(N,E,Arg),p1_call(P1,Arg). +p1_subterm(P1,E):- sub_term(Arg,E),p1_call(P1,Arg). + +:- meta_predicate my_partition(-, ?, ?, ?). +my_partition(_,[],[],[]):-!. +my_partition(P1,[H|L],[H|I],E):- \+ \+ p1_call(P1,H),!, + my_partition(P1,L,I,E). +my_partition(P1,[H|L],I,[H|E]):- + my_partition(P1,L,I,E),!. +my_partition(P1,H,I,HE):- arcST,ibreak, + my_partition(P1,[H],I,HE). + + +mapgroup(P2,G1,L2):- into_list(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). +mapgroup(P1,G1):- into_list(G1,L1), !, with_my_group(L1,maplist(P1,L1)). + +selected_group(Grp):- nb_current('$outer_group',Grp),!. +selected_group([]). + +sub_cmpd(_, LF) :- \+ compound(LF), !, fail. +sub_cmpd(X, X). +sub_cmpd(X, Term) :- + ( is_list(Term) + -> member(E, Term), + sub_cmpd(X, E) + ; tc_arg(_, Term, Arg), + sub_cmpd(X, Arg) + ). + + + +%with_my_group([O|Grp],Goal):- compound(O),O=obj(_),!, locally(nb_setval('$outer_group',[O|Grp]),Goal). +with_my_group(_,Goal):- call(Goal). + +into_mlist(L,L). +my_maplist(P4,G1,L2,L3,L4):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P4,L1,L2,L3,L4)). +my_maplist(P3,G1,L2,L3):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P3,L1,L2,L3)). +my_maplist(P2,G1,L2):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). +my_maplist(P1,G1):- into_mlist(G1,L1), !, with_my_group(L1,maplist(P1,L1)). + + +my_include(P1,L,I):- include(p1_call(P1),L,I). +%my_include(P1,[H|L],O):- (p2_call(p1_call(P1),H,HH)*->(my_include(P1,L,I),O=[HH|I]);my_include(P1,L,O)). +my_include(_,_,[]). + +%my_exclude(P1,I,O):- my_include(not(P1),I,O). +my_exclude(P1,I,O):- my_partition(P1,I,_,O). + + +subst_1L([],Term,Term):-!. +subst_1L([X-Y|List], Term, NewTerm ) :- + subst0011(X, Y, Term, MTerm ), + subst_1L(List, MTerm, NewTerm ). + +subst_2L([],_,I,I). +subst_2L([F|FF],[R|RR],I,O):- subst0011(F,R,I,M),subst_2L(FF,RR,M,O). + + +subst001(I,F,R,O):- subst0011(F,R,I,O),!. + + +subst0011(X, Y, Term, NewTerm ) :- + copy_term((X,Y,Term),(CX,CY,Copy),Goals), + (Goals==[] + ->subst0011a( X, Y, Term, NewTerm ) + ;(subst0011a(CX, CY, Goals, NewGoals), + (NewGoals==Goals -> + subst0011a( X, Y, Term, NewTerm ) + ; (subst0011a(CX, CY, Copy, NewCopy), + NewTerm = NewCopy, maplist(call,NewGoals))))). + + + +subst0011a(X, Y, Term, NewTerm ) :- + ((X==Term)-> Y=NewTerm ; + (is_list(Term)-> maplist(subst0011a(X, Y), Term, NewTerm ); + (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; + ((compound_name_arguments(Term, F, Args), + maplist(subst0011a(X, Y), Args, ArgsNew), + compound_name_arguments( NewTerm, F, ArgsNew )))))),!. + +subst001C(I,F,R,O):- subst001_p2(same_term,I,F,R,O),!. +subst0011C(F,R,I,O):- subst0011_p2(same_term,F,R,I,O),!. +subst_2LC(F,R,I,O):- subst_2L_p2(same_term,F,R,I,O). + +subst_2L_p2(_P2, [],_,I,I):-!. +subst_2L_p2(_P2, _,[],I,I):-!. +subst_2L_p2(P2, [F|FF],[R|RR],I,O):- subst0011_p2(P2, F,R,I,M),subst_2L_p2(P2, FF,RR,M,O). + +subst001_p2(P2, I,F,R,O):- subst0011_p2(P2, F,R,I,O),!. + +subst_1L_p2(_, [],Term,Term):-!. +subst_1L_p2(P2, [X-Y|List], Term, NewTerm ) :- + subst0011_p2(P2, X, Y, Term, MTerm ), + subst_1L_p2(P2, List, MTerm, NewTerm ). + +subst0011_p2(P2, X, Y, Term, NewTerm ) :- + copy_term((X,Y,Term),(CX,CY,Copy),Goals), + (Goals==[] + ->subst0011a_p2(P2, X, Y, Term, NewTerm ) + ;(subst0011a_p2(P2, CX, CY, Goals, NewGoals), + (NewGoals==Goals -> + subst0011a_p2(P2, X, Y, Term, NewTerm ) + ; (subst0011a_p2(P2, CX, CY, Copy, NewCopy), + NewTerm = NewCopy, maplist(call,NewGoals))))). + +subst0011a_p2(P2, X, Y, Term, NewTerm ) :- + (p2_call(P2,X,Term)-> Y=NewTerm ; + (is_list(Term)-> maplist(subst0011a_p2(P2, X, Y), Term, NewTerm ); + (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; + ((compound_name_arguments(Term, F, Args), + maplist(subst0011a_p2(P2, X, Y), Args, ArgsNew), + compound_name_arguments( NewTerm, F, ArgsNew )))))),!. + + + +ppa(FF):- + copy_term(FF,FA,GF), + numbervars(FA+GF,0,_,[attvar(bind),singletons(true)]), + sort_safe(GF,GS),write(' '), + locally(b_setval(arc_can_portray,nil), + ppawt(FA)),format('~N'), + ignore((GS\==[], format('\t'),ppawt(attvars=GS),nl)),nl,!. + +ppawt(FA):- + write_term(FA,[numbervars(false), quoted(true), + character_escapes(true),cycles(true),dotlists(false),no_lists(false), + blobs(portray),attributes(dots), + portray(true), partial(false), fullstop(true), + %portray(false), partial(true), fullstop(true), + ignore_ops(false), quoted(true), quote_non_ascii(true), brace_terms(false)]). + +intersection(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB),!. + +same_univ(A,B):- (plain_var(A)->A==B;(B=@=A->true; (fail, \+ (A \=B )))). + +intersection_univ(APoints,BPoints,Intersected):- + intersection_univ(APoints,BPoints,Intersected,_,_),!. +intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). + +intersection_eq(APoints,BPoints,Intersected):- + intersection_eq(APoints,BPoints,Intersected,_,_),!. +intersection_eq(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- + pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). + +/* +intersection_u([],LeftOverB,[],[],LeftOverB):-!. +intersection_u(LeftOverA,[],[],LeftOverA,[]):-!. +intersection_u([A|APoints],BPoints,[A|Intersected],LeftOverA,LeftOverB):- + select(A,BPoints,BPointsMinusA),!, + intersection_u(APoints,BPointsMinusA,Intersected,LeftOverA,LeftOverB). +intersection_u([A|APoints],BPoints,Intersected,[A|LeftOverA],LeftOverB):- + intersection_u(APoints,BPoints,Intersected,LeftOverA,LeftOverB). +*/ + +:- meta_predicate(each_obj(?,?,0)). +each_obj([],_,_):-!. +each_obj([Obj|List],Obj,Goal):- ignore(Goal), each_obj(List,Obj,Goal). + +pred_intersection(_P2, [],LeftOverB, [],[], [],LeftOverB):-!. +pred_intersection(_P2, LeftOverA,[], [],[], LeftOverA,[]):-!. +pred_intersection(P2, [A|APoints],BPoints,[A|IntersectedA],[B|IntersectedB],LeftOverA,LeftOverB):- + select(B,BPoints,BPointsMinusA), + \+ \+ p2_call(P2, A,B),!, + pred_intersection(P2, APoints,BPointsMinusA,IntersectedA,IntersectedB,LeftOverA,LeftOverB). +pred_intersection(P2, [A|APoints],BPoints,IntersectedA,IntersectedB,[A|LeftOverA],LeftOverB):- + pred_intersection(P2, APoints,BPoints,IntersectedA,IntersectedB,LeftOverA,LeftOverB). + + + + + + + + + + + + + + + + + + + +pp(PP):-pp_m(PP). +pp(Color,PP):- ansi_format([fg(Color)],'~@',[pp(PP)]). + + +warn_skip(P):- pp(warn_skip(P)). + +with_set_stream(_,_,G):- call(G). + +fake_impl(M:F/A):- functor(P,F,A), asserta((M:P :- !, fail)). +fake_impl(F/A):- functor(P,F,A), asserta((P :- !, fail)). + + +:- fake_impl(arc_setval/3). +:- fake_impl(cast_to_grid/3). +:- fake_impl(dot_cfg:dictoo_decl/8). +:- fake_impl(get_param_sess/2). +:- fake_impl(into_list/2). +:- fake_impl(into_type/3). +:- fake_impl(is_grid/1). +:- fake_impl(is_hooked_obj/1). +:- fake_impl(is_vm_map/1). +:- fake_impl(ld_logicmoo_webui/0). +:- fake_impl(must_grid_call/3). +:- fake_impl(o_m_v/3). +:- fake_impl(quick_test/1). +:- fake_impl(url_decode_term/2). +:- fake_impl(xlisting_web:find_http_session/1). +:- fake_impl(xlisting_web:is_cgi_stream/0). + + +end_of_file. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +:- encoding(iso_latin_1). +/* + this is part of (H)MUARC https://logicmoo.org/xwiki/bin/view/Main/ARC/ + + This work may not be copied and used by anyone other than the author Douglas Miles + unless permission or license is granted (contact at business@logicmoo.org) +*/ + + +:- meta_predicate(print_grid(+,+,+,+)). +:- meta_predicate(print_grid(+,+,+)). + + +%:- autoload(library(http/html_write),[html/3,print_html/1]). + +is_debugging(M):- \+ \+ debugging(M),!. +%is_debugging(_):- menu_or_upper('B'). + +debug_m(_,Tiny):- display_length(Tiny,Len),Len<30,!,pp(Tiny). +debug_m(M,_):- \+ is_debugging(M),!. +%debug_m(_,List):- is_list(List),!,print_ss(List). +debug_m(_,Term):- pp(Term). +debug_c(M,_):- \+ is_debugging(M),!. +debug_c(_,C):- call(C),!. +debug_c(M,C):- wots_hs(S,C),debug_m(M,S),!. + +:- meta_predicate(wno(0)). +wno(G):- + locally(b_setval(print_collapsed,10), G). + +:- meta_predicate(print_collapsed(0)). +print_collapsed(Size,G):- + locally(b_setval(print_collapsed,Size), print_collapsed0(Size,G)). + +:- meta_predicate(print_collapsed0(0)). +print_collapsed0(Size,G):- Size<10, !, call(G). +% print_collapsed(Size,G):- call(G). +print_collapsed0(Size,G):- Size>=10, !, wots_hs(_S,G). +print_collapsed0(_,G):- wots_vs(S,G),write(S). + +tersify(I,O):- tracing,!,I=O. +%tersify(I,O):- term_variables(I,Vs), \+ ( member(V,Vs), attvar(V)),!,I=O. +tersify(I,O):- tersify23(I,O),!. +tersify(X,X):-!. + +tersify23(I,O):- quietly((tersify2(I,M),tersify3(M,O))),!. + +%srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). +%srw_arc(I,O):- compound(I),!, wots_hs(O,(write(ppt(I)))). +/* +srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). +*/ +srw_arc(I,O):- is_vm_map(I),!, O='..vvmm..'. +srw_arc(I,O):- is_grid(I),!, O='..grid..'. +/* +srw_arc(List,O):- current_prolog_flag(dmsg_len,Three), + is_list(List),length(List,L),L>Three, + append([A,B,C],[F|_],List),F \='...'(_), !, + simplify_goal_printed([A,B,C,'....'(L>Three)],O). +*/ +%srw_arc(gridFn(_),gridFn):-!. +%srw_arc(I,O):- is_points_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. +%srw_arc(I,O):- is_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. +srw_arc(I,O):- tersify(I,O),!,I\==O,!. + +:- multifile(dumpst_hook:simple_rewrite/2). +:- dynamic(dumpst_hook:simple_rewrite/2). + +dumpst_hook:simple_rewrite(I,O):- fail, notrace(catch(arc_simple_rewrite(I,O),_,fail)). + +arc_simple_rewrite(I,O):- + \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), + current_predicate(bfly_startup/0), + current_predicate(is_group/1), + b_setval(arc_can_portray,nil), + locally(b_setval(arc_can_portray,nil),once((compound(I), lock_doing(srw_arc,I,srw_arc(I,O))))), I\==O, I\=@=O, !, \+ I=O, + b_setval(arc_can_portray,t). + + +%:- set_prolog_flag(never_pp_hook, true). + + +portray_terse:- true,!. + +:- discontiguous arc_portray/2. + + +arc_portray(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +arc_portray(_,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), !, fail. +arc_portray(Map,TF):- get_map_pairs(Map,Type,Pairs),!, arc_portray_pairs(Type,TF,Pairs). + +arc_portray_t(G, _):- is_vm_map(G), !, write_map(G,'arc_portray_t'). +arc_portray_t(G, _):- is_grid(G), !, data_type(G,W),writeq(grid(W)). +arc_portray_t(G, _):- print(G),!. + +arc_portray(G, _):- is_vm_map(G), !, write_map(G,'arc_portray'). +arc_portray(G, TF):- TF == true, portray_terse, arc_portray_t(G, TF),!. +arc_portray(G, TF):- catch(arc_portray_nt(G, TF),E,(writeln(E),never_let_arc_portray_again,fail)),!. +%arc_portray(G, _TF):- writeq(G),!. + +% Portray In Debugger + +arc_portray_nt(G, false):- is_grid(G), print_grid(G),!. +%arc_portray_nt([G|L],_False):- is_object(G), !, pp([G|L]). +%arc_portray_nt(G0, true):- is_group(G0), ppt(G0),!. +%arc_portray_nt(G0, false):- is_group(G0), ppt(G0),!. +arc_portray_nt(G0, Tracing):- is_group(G0), into_list(G0,G), length(G,L),% L>1, !, + maplist(tersify,G0,GG), write(GG), + if_t(Tracing==false, + in_cmt(( + dash_chars, + once(((why_grouped(_TestID,Why,WG),WG=@=G,fail);(Why = (size2D=L)))),!, + print_grid(Why,G),nl_now, + + %underline_print(writeln(Why)), + %print_info_l(G), + dash_chars))). + + +arc_portray_nt(G,_False):- is_object(G), wots(S,writeg(G)), + global_grid(G,GG),!, + print_grid(GG), + write(S),!. % show_indiv(S,G). + %object_grid(G,OG), + %neighbor_map(OG,NG), !, + %print_grid(object_grid,NG),nl_now, + %underline_print(print_info(G)), + +arc_portray_nt(G,false):- via_print_grid(G),!, grid_size(G,H,V),!,H>0,V>0, print_grid(H,V,G). + +% Portray In tracer +arc_portray_nt(G,true):- is_object(G),underline_print((ppt(G))). +arc_portray_nt(G,true):- via_print_grid(G),write_nbsp,underline_print((ppt(G))),write_nbsp. +arc_portray_nt(G,true):- tersify(G,O),write_nbsp,writeq(O),write_nbsp. +arc_portray_nt(G0, _):- \+ is_gridoid(G0),!,print(G0). + + +arc_portray_pairs(Type,TF,Pairs):- + length(Pairs,N), + writeln(arc_portray_pairs(Type,TF,len(N))), + swap_kv(Pairs,VKPairs), + keysort(VKPairs,SVKPairs), + my_maplist(tc_arg(2),SVKPairs,SVKPairs2), + arc_portray_type_pairs(TF,SVKPairs2). + +arc_portray_type_pairs(TF,Pairs):- append(Left,[K1-V1,K2-V2|Right],Pairs),is_grid(V1),is_grid(V2),!, + append(Left,[call-print_side_by_side(yellow,V1,K1,_,V2,K2)|Right],PairsM), + arc_portray_type_pairs(TF,PairsM). +arc_portray_type_pairs(TF,Pairs):- + forall(member(K-V,Pairs),arc_portray_pair(Pairs,K,V,TF)). + +swap_kv([_-V|Pairs],VKPairs):- plain_var(V),!, swap_kv(Pairs,VKPairs). +swap_kv([K-V|Pairs],['-'(Type,K-V)|VKPairs]):- + data_type(V,Type), + swap_kv(Pairs,VKPairs). +swap_kv([],[]). + + +arc_portray_pair(Ps,K,Val,TF):- + nl_if_needed, + arc_portray_1_pair(Ps,K,Val,TF), + nl_if_needed_ansi. + +arc_portray_1_pair(_Ps,call,Val,_TF):- !, call(Val). +arc_portray_1_pair(Ps,K,Val,TF):- + (via_print_grid(Val) -> print_grid(K,Val) + ; (print(K),write('= '),once(arc_portray(Val,TF);print(Val)))), + ignore(arc_portray_pair_optional(Ps,K,Val,TF)),!. + +arc_portray_pair_optional(Ps,K,Val,TF):- + once(( Val\==[], is_list(Val),my_maplist(is_object,Val), + print_info(Val), + Val \= [_], + compare_objects(Val,Diffs), + color_print(cyan,call(arc_portray_pair(Ps,diffs(K),Diffs,TF))))). + + +% arc_portray(G):- \+ \+ catch((wots_hs(S,( tracing->arc_portray(G,true);arc_portray(G,false))),write(S),ttyflush),_,fail). +arc_portray(G):- \+ compound(G),fail. +arc_portray(G):- is_vm(G), !, write('..VM..'). +arc_portray(G):- \+ nb_current(arc_portray,t),\+ nb_current(arc_portray,f),is_print_collapsed,!, + locally(nb_setval(arc_portray,t),arc_portray1(G)). +arc_portray(G):- \+ nb_current(arc_portray,f),!, locally(nb_setval(arc_portray,t),arc_portray1(G)). +arc_portray(G):- locally(nb_setval(arc_portray,f),arc_portray1(G)). + +arc_portray1(G):- + flag(arc_portray_current_depth,X,X), X < 3, + \+ \+ + setup_call_cleanup(flag(arc_portray_current_depth,X,X+1),catch(((tracing->arc_portray(G,true); + arc_portray(G,false)),ttyflush),E,(fail,format(user_error,"~N~q~n",[E]),fail)),flag(arc_portray_current_depth,_,X)). + + +%via_print_grid(G):- tracing,!,fail. +via_print_grid(G):- is_points_list(G). %,!,fail,grid_size(G,H,V),number(H),number(V),H>1,V>1. +via_print_grid(G):- is_grid(G). +via_print_grid(G):- is_obj_props(G),!,fail. +via_print_grid(G):- is_object(G). +via_print_grid(G):- is_group(G). +via_print_grid(G):- is_gridoid(G). + + + +terseA(_,[],[]):- !. +terseA(_,L,'... attrs ...'(N)):- is_list(L),length(L,N),N>10,!. +terseA(I,[A|L],[B|LL]):-terseA(I,A,B),terseA(I,L,LL),!. +terseA(I,dif(A,B),B):-A==I,!. +terseA(I,dif(B,A),B):-A==I,!. +terseA(_,put_attr(_,B,A),A):- B==ci,!. +terseA(_,put_attr(_,B,A),B=A):-!. +terseA(_,A,A):-!. + + +simple_enough(I):- plain_var(I). +simple_enough(I):- atomic(I). +simple_enough(I):- \+ compound(I),!. +simple_enough(_*_):-!. +simple_enough(_+_):-!. +simple_enough(A):- functor(A,_,1),tc_arg(1,A,E),!,simple_enough(E). +%simple_enough(I):- number(I). +%simple_enough(I):- atom(I). + +tersify0(I,O):- simple_enough(I),!,I=O. +tersify0(I,av(C,Others)):- attvar(I),copy_term(I,C,Attrs),terseA(C,Attrs,Others),!. +tersify0(I,I):- var(I),!. + + +%tersifyC(D):- is_vm_map(D),!. +tersifyC(av(_,_)). +tersifyC(objFn(_,_)). +tersifyC(groupFn(_,_)). +tersifyC(objFn(_)). +tersifyC(groupFn(_)). + +tersify1(I,O):- simple_enough(I),!,I=O. +tersify1(av(_,Blue), -(Blue)):-!. +tersify1(I,O):- compound(I), tersifyC(I),!,I=O. +tersify1(gridFn(I),gridFn(I)):-!. % tersifyG(I,O). +%tersify1(gridFn(I),gridFn(O)):-tersifyG(I,O). +tersify1(Nil,[]):- Nil == [],!. +tersify1(I,gridFn(S)):- is_grid(I), into_gridnameA(I,O),!,sformat(S,'~w',[O]). +tersify1(I,gridFn(O)):- is_grid(I),tersifyG(I,O),!. +tersify1(I,groupFn(O,List)):- is_group(I), mapgroup(tersify1,I,List),mapgroup(obj_to_oid,I,OIDs),length(List,N), !,ignore((get_current_test(TestID),is_why_grouped(TestID,N,Why,OIDs),!,O=Why)). + +tersify1(I,Q):- is_object(I),object_ref_desc(I,Q),!. +tersify1(I,O):- is_vm_map(I), get_kov(objs,I,_),!, O='$VAR'('VM'). +tersify1(I,O):- is_vm_map(I), get_kov(pairs,I,_),!, O='$VAR'('Training'). + + +tersifyG(I,O):- tersifyL(I,O),numbervars(O,1,_,[attvar(bind),singletons(false)]),!. + +%tersifyL(I,I):- is_ftVar(I),!. +%tersifyL(I,I):- \+ compound(I),!. +tersifyL(I,O):- \+ is_cons(I),!,O=I. +tersifyL([H|I],[HH|I]):- \+ is_list(I),!,tersify(H,HH). +tersifyL([H|I],O):- nonvar(H), \+ is_group(I), display_length(I,N) , N>170, + length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O),!. +tersifyL(I,O):- tersify0(I,O),!. +tersifyL([H|TT],[HH|TT]):- tersify(H,HH),!,tersifyL(TT,TT),!. +tersifyL(I,O):- tersify1(I,O),!. +tersifyL(I,I). + +tersify2(I,O):- compound(I),(I=(N=V)),tersify2(N,NN),tersify2(V,VV),!,O=(NN=VV). +tersify2(I,O):- simple_enough(I),!,I=O. +tersify2(I,O):- compound(I),tersify1(I,O),!. +tersify2(I,O):- tersify0(I,O),!. +tersify2(I,O):- is_list(I), !, my_maplist(tersify2,I,O). +tersify2(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). +tersify2(I,I). + +tersify3(I,O):- compound(I),(I=(N=V)),tersify3(N,NN),tersify3(V,VV),!,O=(NN=VV). +tersify3(I,O):- simple_enough(I),!,I=O. +tersify3(I,O):- compound(I),tersify1(I,O),!. +tersify3(I,O):- tersify0(I,O),!. +tersify3([H|I],O):- is_list(I), ((display_length(I,N), N>170) -> + (length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O)); I=O),!. +tersify3(I,O):- is_list(I), !, my_maplist(tersify3,I,O). +tersify3(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). +tersify3(I,I). + +write_map(G,Where):- is_vm(G), !, write('...VM_'),write(Where),write('...'). +write_map(G,Where):- is_vm_map(G), !, write('...Map_'),write(Where),write('...'). +write_map(G,Where):- is_dict(G), !, write('...Dict_'),write(Where),write('...'). +write_map(_G,Where):- write('...'),write(Where),write('...'). + + + +non_empty_wqs_c(V):- \+ empty_wqs_c(V). +empty_wqs_c(V):- var(V),!,fail. +empty_wqs_c(A):- atom(A),atom_string(A,S),!,empty_wqs_c(S). +empty_wqs_c([]). +empty_wqs_c(""). +empty_wqs_c(" "). +empty_wqs_c(" "). +empty_wqs_c("\n"). + +is_writer_goal(H):- \+ callable(H),!,fail. +is_writer_goal(H):- is_list(H),!,fail. +is_writer_goal(A):- atom(A),!,is_writer_goal_f(A). +is_writer_goal(H):- \+ compound(H),!,fail. +%is_writer_goal((C1,C2)):- !, (is_writer_goal(C1);is_writer_goal(C2)). +is_writer_goal(C):- compound_name_arity(C,F,_),once(is_writer_goal_f(F);(tc_arg(_,C,E),is_writer_goal(E))). + + +is_writer_goal_f(wqs_c). +is_writer_goal_f(F):- is_writer_goal_l(F),!. +is_writer_goal_f(F):- \+ atom(F),!, term_to_atom(F,A),is_writer_goal_f(A). +is_writer_goal_f(F):- not_writer_goal_r(R),atom_concat(_,R,F),!,fail. +is_writer_goal_f(F):- is_writer_goal_l(L),atom_concat(L,_,F),!. +is_writer_goal_f(F):- is_writer_goal_l(R),atom_concat(_,R,F),!. +not_writer_goal_r(test). is_writer_goal_l(msg). is_writer_goal_l(call). +is_writer_goal_l(nl). is_writer_goal_l(format). is_writer_goal_l(with_). +is_writer_goal_l(locally). + +is_writer_goal_l(html). is_writer_goal_l(ptcol). is_writer_goal_l(wots). +is_writer_goal_l(print). is_writer_goal_l(flush_output). is_writer_goal_l(wqs). +is_writer_goal_l(pp). is_writer_goal_l(write). is_writer_goal_l(dash_). + + +maybe_color(SS,_):- term_contains_ansi(SS),!, write_nbsp, write(SS). +maybe_color(SS,P):- term_contains_ansi(P),!, write_nbsp, write(SS). +maybe_color(SS,P):- pp_msg_color(P,C), ansicall(C,is_maybe_bold(P,write(SS))),!. + +write_atom(S):- \+ atom(S),!,wqs(S). +write_atom(S):- atom_contains(S,'~'),!,notrace(catch(format(S,[]),_,maybe_write_atom_link(S))). +write_atom(S):- maybe_write_atom_link(S),!. +write_atom(S):- into_title_str(S,TS),write(TS),!. + +:- meta_predicate(into_title_str(+,-)). +into_title_str(Term,Str):- string(Term),!,Str=Term. +into_title_str(Term,Str):- plain_var(Term),sformat(Str,'~p',[Term]),!. +into_title_str(Term,Str):- var(Term),tersify0(Term,Terse), sformat(Str,'~p',[Terse]),!. +into_title_str(Term,Str):- term_is_ansi(Term), wots(Str,write_keeping_ansi_mb(Term)),!. +into_title_str(Term,Str):- (is_codelist(Term);is_charlist(Term)),catch(sformat(Str,'~s',[Term]),_,sformat(Str,'~p',[Term])),!. +into_title_str(Term,Str):- is_list(Term),my_maplist(into_title_str,Term,O3),atomics_to_string(O3," ",Str),!. +into_title_str([H|T],Str):- into_title_str(H,A),into_title_str(T,B),atomics_to_string([A,B]," ",Str),!. +into_title_str(Term,Str):- \+ callable(Term),sformat(Str,'~p',[Term]),!. +into_title_str(format(Fmt,Args),Str):- sformat(Str,Fmt,Args),!. +into_title_str(Term,""):- empty_wqs_c(Term),!. +into_title_str(out,"Output"). +into_title_str(in,"Input"). +into_title_str(i,"IN"). +into_title_str(o,"OUT"). +into_title_str(Term,Str):- atom(Term),is_valid_linkid(Term,Kind,_),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[Term,KS]),!. +into_title_str(Term,Str):- atom(Term), atom_contains(Term,'_'), \+ atom_contains(Term,' '), to_case_breaks(Term,T), + include(\=(xti(_,punct)),T,O),my_maplist(tc_arg(1),O,O1),my_maplist(toProperCamelAtom,O1,O2), + atomics_to_string(O2," ",Str),!. +into_title_str(Term,Str):- has_short_id(Term,Kind,ID),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[ID,KS]),!. + +into_title_str(T-U,Str):- into_title_str([some(T),"..to..",some(U)],Str). +into_title_str(T*U,Str):- into_title_str([some(T),"(",some(U),")"],Str). +into_title_str(T+U,Str):- into_title_str(T,S1), number(U), N is U+1, sformat(Str,'~w #~w',[S1,N]). +into_title_str(T+U,Str):- var(U), into_title_str(T,S1), sformat(Str,'~w(s)',[S1]). +into_title_str(title(Term),Str):- !, into_title_str(Term,Str),!. +into_title_str(some(Var),"Some"):- var(Var),!. +into_title_str(some(Var),Str):- !, into_title_str(Var,Str). +into_title_str(User:Term,Str):- User == user, !, into_title_str(Term,Str). +into_title_str(trn,"Training Pair"). +into_title_str(tst,"EVALUATION TEST"). +%into_title_str(Term,Str):- tersify23(Term,Terse),Term\=@=Terse,!,into_title_str(Terse,Str). +into_title_str(Term,Str):- callable_arity(Term,0),is_writer_goal(Term),catch(notrace(wots(Str,call_e_dmsg(Term))),_,fail),!. +into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)),nonvar(Str),atom_length(Str,E50),E50<180,!. +into_title_str(Term,Str):- compound(Term), compound_name_arguments(Term,Name,Args), + %include(not_p1(plain_var),Args,Nonvars), + Args=Nonvars, + my_maplist(tersify,Nonvars,ArgsT), into_title_str([Name,"(",ArgsT,")"],Str),!. +into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)). + +has_short_id(TestID,testid,UUID):- is_valid_testname(TestID),test_id_atom(TestID,UUID). +has_short_id(Obj,object,OID):- is_object(Obj),obj_to_oid(Obj,OID). +has_short_id(Grid,grid,GID):- is_grid(Grid),grid_to_gid(Grid,GID). + + +is_valid_linkid(ID,testid,TestID):- atom_id(ID,TestID),is_valid_testname(TestID),!. +is_valid_linkid(ID,object,Obj):- known_object(ID,Obj),!. +is_valid_linkid(ID,grid,Grid):- known_grid(ID,Grid),!. +% individuate_3(complete, two(v_1d398264_trn_0_in, v_1d398264_trn_0_out)) +is_valid_linkid(ID,group,Grp):- get_current_test(TestID),is_why_grouped_g(TestID,_Count,ID,Grp). + + +wqs_c(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +wqs_c(S):- (string(S);is_codelist(S);is_charlist(S)),catch(format('~s',[S]),_,writeq(S)). +wqs_c(S):- empty_wqs_c(S),!. +wqs_c(S):- var(S),!,write(var(S)). +wqs_c(S):- atom(S),into_title_str(S,TS),write(TS),!. +wqs_c(S):- atom(S),write_atom(S),!. +%wqs_c(S):- atom(S),write(S),!. +wqs_c(S):- \+compound(S),!,notrace(catch(format('~p',[S]),_,write(S))). +wqs_c(title(S)):- !, wqs_c(S). +wqs_c(H+T):- !, wqs_c(H),write_nbsp,wqs_c(T). +wqs_c(S):- is_grid(S), print_grid(S),!. +wqs_c(S):- is_vm(S), pp(S) ,!. +wqs_c(L):- is_list(L), include(non_empty_wqs_c,L,LL),!,wqs_c_l(LL). +wqs_c([H|T]):- pp([H|T]),!. +wqs_c(H):- callable_arity(H,0),is_writer_goal(H),catch(call_e_dmsg(H),_,fail),!. +%wqs_c(H):- callable_arity(H,0),call(H),!. +wqs_c(H):- locally(t_l:wqs_fb(pp_no_nl),wqs(H)),!. + +wqs_c_l([]):-!. +wqs_c_l([H]):- wqs_c(H),!. +wqs_c_l([H|T]):- wqs_c(H),write_nbsp,wqs_c_l(T),!. + + + + + +ppt(_):- is_print_collapsed,!. +ppt(G):- stack_check_or_call(4000,writeq(G)),!. +ppt(G):- is_vm_map(G), !, write_map(G,'ppt'). +ppt(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +%ppt(P):- compound(P),wqs1(P),!. + +ppt(P):- \+ ansi_main, wants_html,!,ptcol_html(P),write_br. +ppt(P):- \+ \+ ((tersify(P,Q),!,pp(Q))),!. +ppt(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,ptcol_html(P)),write_br. +ppt(Color,P):- \+ \+ ((tersify(P,Q),!,pp(Color,Q))),!. + + +write_br:- ansi_main,!,nl. +write_br:- write('
    '). + +ptc(Color,Call):- pp(Color,call(Call)). + +:- meta_predicate(ppnl(+)). +ppnl(Term):- is_list(Term),!,g_out(wqs(Term)). +ppnl(Term):- nl_if_needed,format('~q',[Term]),nl_if_needed_ansi. + +:- meta_predicate(pp(+)). +pp(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,pp(P)),write_br. +pp(Color,P):- ignore((quietlyd((wots_hs(S,pp(P)),!,color_print(Color,S))))). + +pp(_):- is_print_collapsed,!. +%pp(Term):- is_toplevel_printing(Term), !, nl_if_needed, pp_no_nl(Term),!,nl_if_needed_ansi. +pp(_Term):- nl_if_needed, fail. +pp(Term):- \+ ansi_main, wants_html,!, wots_vs(SS,ptcol_html_scrollable(Term)),write(SS),write_br. +pp(Term):- \+ nb_current(arc_can_portray,_),!,locally(nb_setval(arc_can_portray,t),print(Term)). +pp(Term):- az_ansi(pp_no_nl(Term)),!,nl_if_needed_ansi. + +/* +ptcol(P):- wants_html,!,ptcol_html(P). +ptcol(call(P)):- callable(P),!,call(P). +ptcol(P):- pp(P). +*/ + +%ptcol_html(P):- ptcol_html_0(P). +ptcol_html(P):- ptcol_html_scrollable_0(P). +ptcol_html_scrollable(P):- with_tag_ats(div,scrollable,ptcol_html_scrollable_0(P)). + + +ptcol_html_0(P):- with_tag(pre,ptcol_html_wo_pre(P)). +ptcol_html_wo_pre(call(P)):- callable(P),!, in_pp_html(call(P)). +ptcol_html_wo_pre(P):- in_pp_html(print_tree_no_nl(P)). +ptcol_html_scrollable_0(P):- ptcol_html_wo_pre(P). + + +pp_wcg(G):- wants_html,!,ptcol_html_scrollable(G). +pp_wcg(G):- pp_safe(call((locally(nb_setval(arc_can_portray,t),print(G))))),!. + +wqln(Term):- ppnl(Term). +wqnl(G):- pp_safe(call((locally(nb_setval(arc_can_portray,nil),print(G))))),!. + +pp_safe(_):- nb_current(pp_hide,t),!. +pp_safe(call(W)):- !, nl_if_needed,nl_now,call(W),nl_now. +pp_safe(W):- nl_if_needed,nl_now,writeq(W),nl_now. +pp_safe(C,W):- color_print(C,call(pp_safe(W))). + + +%p_p_t_no_nl(Term):- is_toplevel_printing(Term), !, print_tree_no_nl(Term). + +p_p_t_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). +p_p_t_no_nl(Term):- az_ansi(print_tree_no_nl(Term)). + +ppt_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). +ppt_no_nl(P):- tersify(P,Q),!,pp_no_nl(Q). + +is_toplevel_printing(_):- \+ is_string_output, line_position(current_output,N), N<2, fail. + +pp_no_nl(P):- var(P),!,pp(var_pt(P)),nop((dumpST,ibreak)). +pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_no_nl(P):- atom(P),atom_contains(P,'~'),!,format(P). +pp_no_nl(G):- is_vm_map(G), !, write_map(G,'pp'). +%pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_no_nl(P):- \+ \+ (( pt_guess_pretty(P,GP),ptw(GP))). +%pp(P):-!,writeq(P). +%ptw(P):- quietlyd(p_p_t_nl(P)),!. +%ptw(_):- nl_if_needed,fail. +ptw(P):- var(P),!,ptw(var_ptw(P)),nop((dumpST,ibreak)). +ptw(G):- is_vm_map(G), !, write_map(G,'ptw'). +ptw(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +ptw(P):- p_p_t_no_nl(P),!. + +%ptw(P):- quietlyd(write_term(P,[blobs(portray),quoted(true),quote_non_ascii(false), portray_goal(print_ansi_tree),portray(true)])),!. +print_ansi_tree(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +print_ansi_tree(P,_):- catch(arc_portray(P),_,(never_let_arc_portray_again,fail)),!. +print_ansi_tree(P,_OL):- catch(p_p_t_no_nl(P),_,(never_let_arc_portray_again,fail)),!. + +%p_p_t_nl(T):- az_ansi(print_tree_nl(T)). +%p_p_t(T):- az_ansi(print_tree(T)). + +pt_guess_pretty(P,O):- \+ nb_current(in_pt_guess_pretty,t), locally(nb_setval(in_pt_guess_pretty,t),pt_guess_pretty_1(P,O)). +pt_guess_pretty(O,O). + +upcase_atom_var_l(IntL,NameL):- upcase_atom_var(IntL,NameL). +upcase_atom_var_l(IntL,NameL):- is_list(IntL),!,my_maplist(upcase_atom_var_l,IntL,NameL). + +pt_guess_pretty_1(P,O):- copy_term(P,O,_), + ignore((sub_term(Body,O), compound(Body), Body=was_once(InSet,InVars),upcase_atom_var_l(InSet,InVars))), + ignore(pretty1(O)),ignore(pretty_two(O)),ignore(pretty_three(O)),ignore(pretty_final(O)),!, + ((term_singletons(O,SS),numbervars(SS,999999999999,_,[attvar(skip),singletons(true)]))). + +:- dynamic(pretty_clauses:pp_hook/3). +:- multifile(pretty_clauses:pp_hook/3). +:- module_transparent(pretty_clauses:pp_hook/3). +pretty_clauses:pp_hook(FS,Tab,S):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), notrace(catch(arc_pp_hook(FS,Tab,S),_,fail)). + +arc_pp_hook(_,Tab,S):- term_is_ansi(S), !,prefix_spaces(Tab), write_keeping_ansi_mb(S). +%arc_pp_hook(_,Tab,S):- is_vm(S),!,prefix_spaces(Tab),!,write('..VM..'). +%arc_pp_hook(_, _,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +arc_pp_hook(FS,_ ,G):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), + current_predicate(is_group/1), + locally(b_setval(pp_parent,FS), + print_with_pad(pp_hook_g(G))),!. + +pp_parent(PP):- nb_current(pp_parent,PP),!. +pp_parent([]):-!. + +%:- meta_predicate(lock_doing(+,+,0)). +:- meta_predicate(lock_doing(+,+,:)). +lock_doing(Lock,G,Goal):- + (nb_current(Lock,Was);Was=[]), !, + \+ ((member(E,Was),E==G)), + locally(nb_setval(Lock,[G|Was]),Goal). + +never_let_arc_portray_again:- set_prolog_flag(never_pp_hook, true),!. +arc_can_portray:- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t). + +arcp:will_arc_portray:- + \+ current_prolog_flag(never_pp_hook, true), + \+ nb_current(arc_can_portray,f), + %nb_current(arc_can_portray,t), + current_prolog_flag(debug,false), + \+ tracing, + flag(arc_portray_current_depth,X,X),X<3, + current_predicate(bfly_startup/0). + +user:portray(Grid):- + arcp:will_arc_portray, \+ \+ catch(quietly(arc_portray(Grid)),_,fail),!, flush_output. + + +pp_hook_g(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +pp_hook_g(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +pp_hook_g(S):- term_contains_ansi(S), !, write_nbsp, pp_hook_g0(S). +pp_hook_g(G):- \+ plain_var(G), lock_doing(in_pp_hook_g,G,pp_hook_g0(G)). + +pp_hook_g0(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +pp_hook_g0(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. +pp_hook_g0(_):- in_pp(bfly),!,fail. +pp_hook_g0(G):- wots_hs(S,in_bfly(f,pp_hook_g10(G))),write(S). + +mass_gt1(O1):- into_obj(O1,O2),mass(O2,M),!,M>1. + +% Pretty printing +pp_hook_g10(G):- \+ plain_var(G), current_predicate(pp_hook_g1/1), lock_doing(in_pp_hook_g10,G,pp_hook_g1(G)). + +%as_grid_string(O,SSS):- is_grid(O),wots_vs(S,print_grid(O)), sformat(SSS,'{ ~w}',[S]). +as_grid_string(O,SSS):- wots_vs(S,show_indiv(O)), sformat(SSS,'{ ~w}',[S]). +as_pre_string(O,SS):- wots_hs(S,show_indiv(O)), strip_vspace(S,SS). + + +pretty_grid(O):- + catch( + (wots_hs(S,print_grid(O)),strip_vspace(S,SS), + ptc(orange,(format('" ~w "',[SS])))), + _,fail),!. +/* +pretty_grid(O):- + catch( + (wots_hs(S,print_grid(O)),strip_vspace(S,SS), + ptc(orange,(format('" ~w "',[SS])))), + _,(never_let_arc_portray_again,fail)). +*/ +pp_hook_g1(O):- plain_var(O), !, fail. + +pp_hook_g1(O):- attvar(O), !, is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. +pp_hook_g1(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +%pp_hook_g1(S):- term_contains_ansi(S), !, fail, write_nbsp, write_keeping_ansi_mb(S). +pp_hook_g1(rhs(O)):- write_nbsp,nl,bold_print(print(r_h_s(O))),!. + +pp_hook_g1(iz(O)):- compound(O), O = info(_),underline_print(print(izz(O))),!. +pp_hook_g1(O):- is_grid(O), /* \+ (sub_term(E,O),compound(E),E='$VAR'(_)), */ pretty_grid(O). + + +pp_hook_g1(O):- is_object(O), into_solid_grid(O,G), wots(SS,pretty_grid(G)),write(og(SS)),!. + +pp_hook_g1(shape_rep(grav,O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(shape_rep(grav,S,Q)),!. +pp_hook_g1(vals(O)):- !, writeq(vals(O)),!. +%pp_hook_g1(l2r(O)):- into_solid_grid_strings(l2r(O),Str),Str\=@=l2r(O),print_term_no_nl(Str),!. +pp_hook_g1(localpoints(O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(localpoints(S,Q)),!. +pp_hook_g1(C):- compound(C), compound_name_arguments(C,F,[O]),is_points_list(O), length(O,N),N>2, as_grid_string(O,S), compound_name_arguments(CO,F,[S]), print(CO),!. + +pp_hook_g1(O):- is_points_list(O),as_grid_string(O,S),write(S),!. +pp_hook_g1(O):- is_real_color(O), color_print(O,call(writeq(O))),!. +pp_hook_g1(O):- is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. + +pp_hook_g1(_):- \+ in_pp(ansi),!, fail. + + +pp_hook_g1(Grp):- current_predicate(pp_ilp/1),is_rule_mapping(Grp),pp_ilp(Grp),!. + +pp_hook_g1(O):- atom(O), atom_contains(O,'o_'), pp_parent([LF|_]), \+ (LF==lf;LF==objFn), + resolve_reference(O,Var), O\==Var, \+ plain_var(Var),!, + write_nbsp, writeq(O), write(' /* '), show_indiv(Var), write(' */ '). + +pp_hook_g1(O):- is_object(O),pp_no_nl(O), !. +pp_hook_g1(O):- is_group(O),pp_no_nl(O), !. + +%pp_hook_g1(change_obj(N,O1,O2,Sames,Diffs)):- showdiff_objects5(N,O1,O2,Sames,Diffs),!. + +pp_hook_g1(O):- is_vm_map(O),data_type(O,DT), writeq('..map.'(DT)),!. +pp_hook_g1(O):- is_gridoid(O),show_indiv(O), !. +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), with_tagged('h5',w_section(object,[O1, O2],pp(O))). +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(showdiff_objects(O1,O2)),!. +%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(object,[O1, O2],with_tagged('h5',pp(O))). +%pp_hook_g1(O):- O = diff(A -> B), (is_gridoid(A);is_gridoid(B)),!, p_c_o('diff', [A, '-->', B]),!. +pp_hook_g1(O):- O = showdiff( O1, O2), !, showdiff(O1, O2). +%pp_hook_g1(O):- compound(O),wqs1(O), !. +pp_hook_g1(O):- \+ compound(O),fail. +pp_hook_g1(G):- '@'(pp_hook_g1a(G),user). + +pp_hook_g1a(G):- \+ current_prolog_flag(debug,true), + current_predicate(pp_hook_g2/1), lock_doing(in_pp_hook_g3,any,pp_hook_g2(G)),!. +pp_hook_g1a(G):- fch(G),!. + +%pp_hook_g2(O):- current_predicate(colorize_oterms/2),colorize_oterms(O,C), notrace(catch(fch(C),_,fail)),! . + +fch(O):- wqs1(O). +%fch(O):- pp_no_nl(O). +%fch(O):- print(O). +%fch(O):- p_p_t_no_nl(O). + +wotsq(O,Q):- wots_hs(Q,wqnl(O)). +has_goals(G):- term_attvars(G,AV),AV\==[]. +has_goals(G):- term_variables(G,TV),term_singletons(G,SV),TV\==SV. + +maybe_term_goals(Term,TermC,Goals):- + term_attvars(Term,Attvars), Attvars\==[],!, + term_variables(Term,Vars), + include(not_in(Attvars),Vars,PlainVars), + copy_term((Attvars+PlainVars+Term),(AttvarsC+PlainVarsC+TermC),Goals), + numbervars(PlainVarsC,10,Ten1,[singletons(true),attvar(skip)]), + numbervars(AttvarsC+Goals,Ten1,_Ten,[attvar(bind),singletons(false)]). + +maybe_replace_vars([],SGoals,TermC,SGoals,TermC):-!. +maybe_replace_vars([V|VarsC],SGoals,TermC,RSGoals,RTermC):- + my_partition(sub_var(V),SGoals,Withvar,WithoutVar), + Withvar=[OneGoal], + freeze(OneGoal,(OneGoal\==null,OneGoal \== @(null))), + findall(_,sub_var(V,TermC),LL),LL=[_],!, + subst([WithoutVar,TermC],V,{OneGoal},[SGoalsM,TermCM]), + maybe_replace_vars(VarsC,SGoalsM,TermCM,RSGoals,RTermC). +maybe_replace_vars([_|VarsC],SGoals,TermC,RSGoals,RTermC):- + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC). + + +src_sameish(Orig,Find):- copy_term(Orig,COrig),Find=Orig,Orig=@=COrig. + +number_vars_calc_goals(Term,SSRTermC,[1|SRSGoals]):- + term_singletons(Term,Singles), + term_attvars(Term,Vars), + copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), + notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]),_,fail)), + sort_goals(Goals,VarsC,SGoals), + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), + include(not_sub_var(RSGoals),SinglesC,KSingles), + length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), + subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), + subst_1L_p2(src_sameish,[ + {dif('$VAR'('__'),RED)}=dif(RED), + {cbg('$VAR'('__'))}=cbg], + SRTermC,SSRTermC),!. + +number_vars_calc_goals(Term,SRTermC,[2|RSGoals]):- + term_attvars(Term,AVars), + copy_term(Term+AVars,TermC+VarsC,GoalsI), + term_attvars(GoalsI,GAttvars), copy_term(GoalsI+GAttvars,_+GAttvarsC,GoalsGoals), + append(GoalsI,GoalsGoals,Goals), + append([VarsC,GAttvarsC,AVars,GAttvars],SortVars), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), + sort_goals(Goals,SortVars,SGoals), + maybe_replace_vars(SortVars,SGoals,TermC,RSGoals,RTermC), + subst_1L_p2(src_sameish,[ + {dif('$VAR'('___'),RED)}=dif(RED), + {cbg('$VAR'('___'))}=cbg], + RTermC,SRTermC),!. + +number_vars_calc_goals(Term,SSRTermC,[3|SRSGoals]):- + term_singletons(Term,Singles), + term_attvars(Term,Vars), + copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), + sort_goals(Goals,VarsC,SGoals), + maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), + include(not_sub_var(RSGoals),SinglesC,KSingles), + length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), + subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), + subst(SRTermC,{cbg('_')},cbg,SSRTermC),!. + +number_vars_calc_goals(Term,TermC,[4|SGoals]):- + term_variables(Term,Vars), + term_attvars(Term,Attvars), + copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), + notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(true)]),_,fail)), + append([AttvarsC,VarsC,AttvarsC,Vars],Sorted), + sort_goals(Goals,Sorted,SGoals),!. + +number_vars_calc_goals(Term,TermC,[5|SGoals]):- + term_variables(Term,Vars), + term_attvars(Term,Attvars), + copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), + numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]), + append([AttvarsC,VarsC,Attvars,Vars],Sorted), + sort_goals(Goals,Sorted,SGoals),!. + + + +writeg(Term):- ignore( \+ notrace(catch(once(writeg0(Term);ppa(Term)),E,(pp(E),ppa(Term))))),!. + +writeg0(Term):- term_attvars(Term,Attvars),Attvars\==[],!, + must_det_ll(((number_vars_calc_goals(Term,TermC,Goals), + writeg5(TermC)),!, + if_t(Goals\==[],(nl_if_needed, + write(' goals='), call_w_pad_prev(3,az_ansi(print_tree_no_nl(Goals))))))),!. + +writeg0(Term):- \+ ground(Term), + \+ \+ must_det_ll(( + numbervars(Term,0,_Ten1,[singletons(true),attvar(skip)]), writeg5(Term))). +writeg0(Term):- writeg5(Term),!. + +writeg5(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X),write_nbsp. +writeg5(N=V):- is_simple_2x2(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). +writeg5(N=V):- is_gridoid(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). +writeg5(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad_prev(2,writeg5(V)). +writeg5(_):- write_nbsp, fail. +writeg5(V):- writeg9(V). + +writeg8(X):- is_ftVar(X),!,print(X). +writeg8(X):- var(X),!,print(X). +writeg8(X):- writeq(X). + +writeg9(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). +writeg9(V):- is_list(V),nl_if_needed,write('['),!,my_maplist(writeg5,V),write(']'). +writeg9(_):- write_nbsp,write(' \t '),fail. +writeg9(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X). +writeg9(V):- pp_no_nl(V). + + +/* +writeg5(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). +writeg5(V):- is_gridoid(V),!,call_w_pad_prev(2,writeg9(V)). +writeg5(V):- is_list(V),nl_if_needed,write('['),my_maplist(writeg5,V),write(']'). +*/ +arg1_near(Vars,Goal,Nth):- tc_arg(1,Goal,PreSort),nth1(Nth,Vars,E),E==PreSort,!. +arg1_near(_VarsC,Goal,PreSort):- tc_arg(1,Goal,PreSort),!. +arg1_near(_VarsC,Goal,Goal). + +sort_goals(Goals,VarsC,SGoals):- predsort(sort_on(arg1_near(VarsC)),Goals,SGoals). + +/* + +writeg0(Obj):- is_object(Obj),pp(Obj),!. +writeg0(O):- writeg00(O). + +writeg00(Term):- + maybe_term_goals(Term,TermC,Goals), + writeg00(TermC), call_w_pad(2,writeg00(Goals)),!. +writeg00(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad(2,writeg00(V)). +writeg00(O):- compound(O),compound_name_arguments(O,F,[A]),!,call_w_pad(2,((writeq(F),write('('),writeg3(A),write(')')))). +writeg00(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). +writeg00([H|T]):- compound(H),H=(_=_), my_maplist(writeg0,[H|T]). +writeg00([H|T]):- is_list(T),call_w_pad(2,((nl,write('['),writeg2(H),my_maplist(writeg0,T),write(']'),nl))). +%writeg0(Term):- \+ ground(Term),!, \+ \+ (numbervars(Term,99799,_,[singletons(true)]), +% subst(Term,'$VAR'('_'),'$VAR'('_____'),TermO), writeg0(TermO)). +%writeg0(V):- \+ is_list(V),!,writeq(V),nl_now. +writeg00(V):- \+ is_list(V),!,pp(V). +writeg00(X):- call_w_pad(2,pp(X)). + +writeg1(N=V):- is_gridoid(V),!,print_grid(N,V),call_w_pad(2,(my_maplist(writeg1,V))). +writeg1(X):- nl_if_needed,writeg2(X),!,write_nbsp,!. +writeg2(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). +writeg2(X):- is_ftVar(X),!,print(X). +writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(true)]),!. +%writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(false)]),!. +%writeg1(X):- nl_if_needed,writeg(X). +writeg2(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +writeg2(X):- writeq(X),!. +writeg3(X):- is_list(X),X\==[],X=[_,_|_],!,writeg(X). +writeg3(X):- writeg2(X). +*/ + +% Nov 9th, 1989 +/* +pp_hook_g1(T):- + nb_current('$portraying',Was) + -> ((member(E,Was), T==E) -> ptv2(T) ; locally(b_setval('$portraying',[T|Was]),ptv0(T))) + ; locally(b_setval('$portraying',[T]),ptv0(T)). +*/ + +%pp_hook_g(G):- compound(G),ppt(G),!. +%pp_hook_g(G):- ppt(G),!. + + +strip_vspace(S,Stripped):- string_concat(' ',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,' ',S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat('\n',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,'\n',S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat('\t',SS,S),!,strip_vspace(SS,Stripped). +strip_vspace(S,Stripped):- string_concat(SS,'\t',S),!,strip_vspace(SS,Stripped). + +strip_vspace(S,Stripped):- replace_in_string([" \n"="\n","( "="( ","(\n"="( "],S,S2),S2\==S,!,strip_vspace(S2,Stripped). +%strip_vspace(S,Stripped):- split_string(S, "", "\t\r\n", [Stripped]). +strip_vspace(S,S). + + +print_nl(P):- nl_if_needed, wots_hs(SS,pp_no_nl(P)), maybe_color(SS,P),nl_if_needed. + +color_write(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +color_write(P):- wots_hs(SS,write(P)), maybe_color(SS,P). + +write_keeping_ansi_mb(P):- is_maybe_bold(P,write_keeping_ansi(P)). + +is_maybe_bold(P):- sformat(S,'~w',[P]),atom_contains(S,'stOF'). + +is_maybe_bold(P,G):- is_maybe_bold(P),!, underline_print(bold_print(G)). +is_maybe_bold(_P,G):- call(G). + +pp_msg_color(P,C):- compound(P),pc_msg_color(P,C),!. +pp_msg_color(P,C):- must_det_ll(mesg_color(P,C)). +pc_msg_color(iz(P),C):- pp_msg_color(P,C). +pc_msg_color(link(P,_,_),C):- pp_msg_color(P,C). +pc_msg_color(link(P,_),C):- pp_msg_color(P,C). +pc_msg_color((_->P),C):- pp_msg_color(P,C). +pc_msg_color([P|_],C):- pp_msg_color(P,C). +pc_msg_color(diff(P),C):- pp_msg_color(P,C). + +%:- meta_predicate(wots_hs(0)). +%wots_hs(G):- wots_hs(S,G),write(S). + +:- meta_predicate(wots_ansi(-,0)). +wots_ansi(S,Goal):- wots(S,woto_ansi(Goal)). +:- meta_predicate(wots_ansi(-,0)). +wots_html(S,Goal):- wots(S,woto_html(Goal)). + +:- meta_predicate(woto_ansi(0)). +woto_ansi(Goal):- with_toplevel_pp(ansi,Goal). +:- meta_predicate(woto_html(0)). +woto_html(Goal):- with_toplevel_pp(http,Goal). + +:- meta_predicate(wots_hs(-,0)). +%wots_hs(S,G):- \+ wants_html,!,wots(S,G). +%wots_hs(S,G):- wots(S,G),!. +wots_hs(S,G):- wots(SS,G),notrace(remove_huge_spaces(SS,S)). +:- meta_predicate(wots_vs(-,0)). +wots_vs(OOO,G):- wots(S,G),notrace(fix_vspace(S,OOO)). + +fix_vspace(S,OOO):- + strip_vspace(S,SS), (atom_contains(SS,'\n') -> + wots_hs(SSS,(nl_now,write(' '),write(SS),nl_now));SSS=SS), + remove_huge_spaces(SSS,OOO). + + +write_tall(L):- is_list(L),!,my_maplist(write_tall,L). +write_tall(E):- wots_vs(S,wqs_c(E)),writeln(S). +write_wide(L):- is_list(L),!,my_maplist(write_wide,L). +write_wide(E):- wots_vs(S,wqs_c(E)),write(S),write_nbsp. + +p_to_br(S,SS):- fix_br_nls(S,S0), + cr_to_br(S0,SSS), + replace_in_string(['

    '='
    ','
    '='
    ','

    '=' ','

    '='
    ','

    '='
    '],SSS,SSSS), + cr_to_br(SSSS,SS). + +cr_to_br(S,SSS):- wants_html,!,cr_to_br_html(S,SSS). +cr_to_br(S,SSS):- cr_to_br_ansi(S,SSS). + +cr_to_br_html(S,SSS):- replace_in_string(['\r\n'='
    ','\r'='
    ','\n'='
    '],S,SSS). +cr_to_br_ansi(S,SSS):- replace_in_string(['
    '='\n',' '=' '],S,SSS). + +fix_br_nls(S,O):- replace_in_string( + ['
    \n'='
    ','
    \n'='
    ','

    \n'='

    ','

    \n'='

    ','

    \n'='

    ', + '\n
    '='
    ','\n
    '='
    ','\n

    '='

    ','\n

    '='

    ','\n

    '='

    '],S,O). + +remove_huge_spaces(S,O):- notrace((fix_br_nls(S,SS),!,p_to_br(SS,O))),!. +/* +remove_huge_spaces(S,O):- fix_br_nls(S,S0), + replace_in_string([' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + ' '=' ', + '\t'=' ', + ' '=' '],S0,SS),p_to_br(SS,O). +*/ + + +wqs_l(H):- \+ is_list(H),!, wqs(H). +wqs_l(H):- wqs(H). + +wqs(P):- wots_hs(SS,wqs0(P)), maybe_color(SS,P). +wqs(C,P):- ansicall(C,wqs0(P)),!. + +wqs0(X):- plain_var(X), wqs(plain_var(X)),!. +wqs0(X):- plain_var(X), !, wqs(plain_var(X)), ibreak. +wqs0(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). +wqs0(C):- is_colorish(C),color_print(C,C),!. +wqs0(G):- is_vm_map(G), !, write_map(G,'wqs'). +wqs0(X):- var(X), !, get_attrs(X,AVs),!,writeq(X),write('/*{'),print(AVs),write('}*/'). +wqs0(X):- attvar(X), !, wqs(attvar(X)). +wqs0(nl_now):- !, nl_now. wqs0(X):- X=='', !. wqs0(X):- X==[], !. +wqs0(X):- is_grid(X), !, print_grid(X). +wqs0(G):- compound(G), G = call(C),callable(C),!,call(C). +wqs0([T]):- !, wqs(T). +wqs0([H|T]):- string(H), !, write(H), write_nbsp, wqs(T). +wqs0([H|T]):- compound(H),skip(_)=H, !,wqs(T). +wqs0([H|T]):- wqs(H), need_nl(H,T), wqs(T), !. +wqs0(X):- is_object(X), tersify1(X,Q), X\==Q,!, wqs(Q). +wqs0(X):- is_object(X), show_shape(X),!. +wqs0(X):- string(X), atom_contains(X,'~'), catch((sformat(S,X,[]),color_write(S)),_,fail),!. +wqs0(X):- string(X), !, color_write(X). +%wqs([H1,H2|T]):- string(H1),string(H2),!, write(H1),write_nbsp, wqs([H2|T]). +%wqs([H1|T]):- string(H1),!, write(H1), wqs(T). +%wqs([H|T]):- compound(H),!, writeq(H), wqs(T). + +wqs0(call(C)):- !, call(C). +wqs0(X):- \+ compound(X),!, write_nbsp, write(X). +wqs0(C):- compound(C),wqs1(C),!. +wqs0(C):- wqs2(C). +%wqs(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). + +wqs2(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). +%wqs2(P):- wants_html,!,pp(P). + +:- thread_local(t_l:wqs_fb/1). +wqs2(X):- t_l:wqs_fb(P1),call(P1,X),!. +%wqs2(X):- with_wqs_fb(writeq,X). +wqs2(X):- with_wqs_fb(writeq,print(X)),!. +%wqs2(X):- with_wqs_fb(writeq,((write_nbsp,write_term(X,[quoted(true)])))). + +with_wqs_fb(FB,Goal):- + locally(t_l:wqs_fb(FB),Goal). + + +as_arg_str(C,S):- wots_vs(S,print(C)). + +arg_string(S):- string(S),!. +arg_string(S):- term_contains_ansi(S),!. + +wqs1(C):- \+ compound(C),!,wqs0(C). +wqs1(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). + +wqs1(format(C,N)):- catch((sformat(S,C,N),color_write(S)),_,fail),!. +wqs1(writef(C,N)):- !, writef(C,N). +wqs1(q(C)):- \+ arg_string(C),wots_hs(S,writeq(C)),color_write(S),!. +wqs1(g(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs1(C))),print(g(S)),!. +wqs1(print_ss(C)):- \+ arg_string(C), wots_vs(S,print_ss(C)),wqs1(print_ss(S)),!. +wqs1(b(C)):- \+ arg_string(C), wots_vs(S,bold_print(wqs1(C))),color_write(S). +wqs1(T):- \+ is_list(T), term_contains_ansi(T),!,write_keeping_ansi_mb(T). +wqs1(norm(C)):- writeq(norm(C)),!. +wqs1(grid_rep(norm,C)):- writeq(grid_rep(norm,C)),!. +wqs1(grid(C)):- writeq(grid(C)),!. +wqs1(rhs(RHS)):- nl_now,wqnl(rhs(RHS)),nl_now. +%wqs1(grid_ops(norm,C)):- writeq(norm(C)),!. +%norm_grid + +wqs1(pp(P)):- wots_vs(S,pp_no_nl(P)),write((S)). +wqs1(ppt(P)):- wots_vs(S,ppt_no_nl(P)),write((S)). +wqs1(wqs(P)):- wots_vs(S,wqs(P)),write((S)). +wqs1(wqs(C,P)):- wots_vs(S,wqs(P)),color_print(C,S). + +wqs1(vals(C)):- writeq(vals(C)),!. +%wqs1(colors_cc(C)):- \+ arg_string(C), as_arg_str(C,S),wqs(colorsz(S)). +wqs1(io(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs(C))),write(io(S)). + +wqs1(uc(C,W)):- !, write_nbsp, color_print(C,call(underline_print(format("\t~@",[wqs(W)])))). +wqs1(cc(C,N)):- is_color(C),!,color_print(C,call(writeq(cc(C,N)))). +wqs1(write_nav_cmd(C,N)):- !, write_nav_cmd(C,N). + +wqs1(-(C,N)):- is_color(C),!,color_print(C,call(writeq(C))), write('-'), wqs(N). +wqs1(cc(C,N)):- N\==0,attvar(C), get_attrs(C,PC), !, wqs(ccc(PC,N)). +wqs1(cc(C,N)):- N\==0,var(C), sformat(PC,"~p",[C]), !, wqs(ccc(PC,N)). +wqs1(cc(C,N)):- \+ arg_string(C), wots_hs(S,color_print(C,C)), wqs(cc(S,N)). +wqs1(color_print(C,X)):- is_color(C), !, write_nbsp, color_print(C,X). +wqs1(color_print(C,X)):- \+ plain_var(C), !, write_nbsp, color_print(C,X). +wqs1(X):- into_f_arg1(X,_,Arg),is_gridoid(Arg),area_or_len(Arg,Area),Area<5,writeq(X),!. +% wqs1(C):- callable(C), is_wqs(C),wots_vs(S,catch(C,_,fail)),write((S)). +wqs1(X):- is_gridoid_arg1(X), print_gridoid_arg1(X). + +into_f_arg1(X,F,Arg):- compound(X), compound_name_arguments(X,F,[Arg]), compound(Arg). + +is_gridoid_arg1(X):- into_f_arg1(X,_F,Arg),is_gridoid(Arg). +print_gridoid_arg1(X):- into_f_arg1(X,F,Arg),print_gridoid_arg1(F,Arg). + +print_gridoid_arg1(F,Arg):- \+ wants_html,!, wots_vs(VS,wqs(Arg)), writeq(F),write('(`'),!, print_with_pad(write(VS)),write('`)'). +print_gridoid_arg1(F,Arg):- wots_vs(VS,wqs(Arg)), + with_tag_style(span,"display: inline; white-space: nowrap",(writeq(F),write('({'),!,write(VS),write('})'))). + + +nl_needed(N):- line_position(current_output,L1),L1>=N. + +nl_now :- wants_html,!,nl_if_needed_ansi. +nl_now :- nl. + +ansi_in_pre:- current_predicate(in_pre/0),in_pre. +nl_if_needed :- ansi_main,!, format('~N'). +nl_if_needed :- ansi_in_pre,ignore((nl_needed(11),write('
    '))),!. +nl_if_needed :- wants_html,!,ignore((nl_needed(11),write('
    \n'))). +nl_if_needed :- format('~N'). +nl_if_needed_ansi :- \+ ansi_main, wants_html,!. +nl_if_needed_ansi :- nl_if_needed. + +write_nbsp:- ansi_main,!,write(' '). +write_nbsp:- wants_html,!,write(' '). +write_nbsp:- write(' '). + +is_breaker(P):- compound(P),functor(P,_,A), A>=3. + +last_f(H,F):- \+ compound(H),data_type(H,F). +last_f(H,F/A):- compound(H),!,functor(H,F,A). + +need_nl(_,_):- line_position(current_output,L1),L1<40,!. +need_nl(_,_):- line_position(current_output,L1),L1>160,!,nl_if_needed. +need_nl(H0,[H1,H2|_]):- H1\=cc(_,_), last_f(H0,F0),last_f(H1,F1),last_f(H2,F2), F0\==F1, F1==F2,!,format('~N '). +%need_nl(H0,[H1|_]):- last_f(H0,F0),last_f(H1,F1), F0==F1, !, write_nbsp. +need_nl(_,_). +/* +need_nl(_Last,[H|_]):- last_f(H,F), + once(nb_current(last_h,cc(LF,C));(LF=F,C=0)), + (LF==F-> (write_nbsp, plus(C,1,CC), nb_setval(last_h,cc(F,CC))) ; ((C>2 -> nl_now ; write_nbsp), nb_setval(last_h,cc(F,0)))). + +need_nl(_,_):- wants_html,!,write_nbsp. +%need_nl(_,_):- !,write_nbsp. +need_nl(H,[P|_]):- \+ is_breaker(H),is_breaker(P),line_position(user_output,L1),L1>80,nl_now,bformatc1('\t\t'). +need_nl(_,_):- line_position(user_output,L1),L1>160,nl_now,bformatc1('\t\t'). +need_nl(_,_). +*/ + +dash_chars:- wants_html,!,section_break. +dash_chars:- dash_chars(40),!. + +dash_chars(_):- wants_html,!,section_break. +dash_chars(H):- integer(H), dash_border(H). +dash_chars(S):- nl_if_needed,dash_chars(60,S),nl_if_needed_ansi. +dash_chars(_,_):- wants_html,!,section_break. +dash_chars(H,_):- H < 1,!. +dash_chars(H,C):- forall(between(0,H,_),bformatc1(C)). + +%section_break:- wants_html,!,write('

    '). +section_break. +%dash_uborder_no_nl_1:- line_position(current_output,0),!, bformatc1('\u00AF\u00AF\u00AF '). +%dash_uborder_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('\u00AF\u00AF\u00AF '). +dash_uborder_no_nl_1:- bformatc1('\u00AF\u00AF\u00AF '). +dash_uborder_no_nl_1:- uborder(Short,Long),!, bformatc1(Short),bformatc1(Long),write_nbsp. +dash_uborder_no_nl(1):- !, dash_uborder_no_nl_1. +dash_uborder_no_nl(Width):- WidthM1 is Width-1, uborder(Short,Long),write_nbsp, write(Short),dash_chars(WidthM1,Long),!. +dash_uborder_no_nl(Width):- WidthM1 is Width-1, write_nbsp, bformat('\u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'),!. +dash_uborder_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' \u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'). + +dash_uborder(Width):- nl_if_needed,dash_uborder_no_nl(Width),nl_now. + +uborder('-','--'):- stream_property(current_output,encoding(utf8)),!. +uborder('\u00AF','\u00AF\u00AF'):- !. %stream_property(current_output,encoding(text)). +%uborder('-','--'). + +dash_border_no_nl_1:- line_position(current_output,0),!, bformatc1(' ___ '). +dash_border_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('___ '). +dash_border_no_nl_1:- bformatc1(' ___ '). + +%dash_border_no_nl(Width):- write(''),dash_chars(Width,'_'),write_nbsp,!. + +dash_border_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' _'),dash_chars(WidthM1,'__'). + +dash_border(Width):- !, dash_border_no_nl(Width),nl_now,!. + +functor_test_color(pass,green). +functor_test_color(fail,red). +functor_test_color(warn,yellow). + +arcdbg(G):- is_vm_map(G), !, write_map(G,'arcdbg'). +arcdbg(G):- compound(G), compound_name_arity(G,F,_),functor_test_color(F,C), + wots_hs(S,print(G)),color_print(C,S),!,nl_if_needed_ansi. +arcdbg(G):- u_dmsg(G). + + +%user:portray(Grid):- ((\+ tracing, is_group(Grid),print_grid(Grid))). +%user:portray(Grid):- quietlyd((is_object(Grid),print_grid(Grid))). +n_times(N,Goal):- forall(between(1,N,_),ignore(Goal)). +banner_lines(Color):- banner_lines(Color,1). +banner_lines(Color,N):- wants_html,!,format('\n
    \n',[N,Color]),!. +banner_lines(Color,N):- + must_det_ll((nl_if_needed, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, + n_times(N,color_print(Color,'=================================================')),nl_now, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, + n_times(N,color_print(Color,'=================================================')),nl_now, + n_times(N,color_print(Color,'-------------------------------------------------')),nl_now)),!. + +print_sso(A):- ( \+ compound(A) ; \+ (sub_term(E,A), is_gridoid(E))),!, u_dmsg(print_sso(A)),!. +print_sso(A):- grid_footer(A,G,W),writeln(print_sso(W)), print_grid(W,G),!. +print_sso(A):- must_det_ll(( nl_if_needed, into_ss_string(A,SS),!, + SS = ss(L,Lst), + writeln(print_sso(l(L))), + forall(member(S,Lst),writeln(S)),nl_if_needed)),!. + +var_or_number(V):- var(V),!. +var_or_number(V):- integer(V),!. + + +find_longest_len(SL,L):- find_longest_len(SL,10,L),!. +find_longest_len([],L,L). +find_longest_len([S|SS],N,L):- print_length(S,N2),max_min(N,N2,NM,_), + find_longest_len(SS,NM,L). + +:- meta_predicate( print_with_pad(0)). +:- export( print_with_pad/1). +/*print_with_pad(Goal):- + + (line_position(current_output,O);O=0),!, + O1 is O+1, + call_w_pad(O1,Goal). +*/ +print_with_pad(Goal):-(line_position(current_output,O);O=0),!, O1 is O+1,wots(S,Goal),print_w_pad(O1,S). + + +into_s(Text,S):- notrace(catch(text_to_string(Text,S),_,fail)),!. +into_s(Obj,S):- wots_hs(S,pp(Obj)),!. + +print_w_pad(Pad,Text):- into_s(Text,S), atomics_to_string(L,'\n',S)-> my_maplist(print_w_pad0(Pad),L). +print_w_pad0(Pad,S):- nl_if_needed,dash_chars(Pad,' '), write(S). + + +:- meta_predicate(call_w_pad_prev(+,0)). +call_w_pad_prev(Pad,Goal):- wots_hs(S,Goal), print_w_pad(Pad,S). + +%call_w_pad(N,Goal):- wants_html,!,format('',[N]),call_cleanup(call(Goal),write('')). +:- meta_predicate(call_w_pad(+,0)). +call_w_pad(_N,Goal):- wants_html,!,format('',[]),call_cleanup(call(Goal),write('')). +call_w_pad(N,Goal):- nl_if_needed,wots_hs(S,dash_chars(N,' ')),!,pre_pend_each_line(S,Goal). +maybe_print_pre_pended(Out,Pre,S):- atomics_to_string(L,'\n',S), maybe_print_pre_pended_L(Out,Pre,L). +maybe_print_pre_pended_L(Out,_,[L]):- write(Out,L),!,flush_output(Out). +maybe_print_pre_pended_L(Out,Pre,[H|L]):- write(Out,H),nl(Out),!,write(Out,Pre),maybe_print_pre_pended_L(Out,Pre,L). + +%pre_pend_each_line(_,Goal):- !,ignore(Goal). +:- meta_predicate(pre_pend_each_line(+,0)). +pre_pend_each_line(Pre,Goal):- write(Pre),pre_pend_each_line0(Pre,Goal). +pre_pend_each_line0(Pre,Goal):- + current_output(Out), + current_predicate(predicate_streams:new_predicate_output_stream/2),!, + call(call,predicate_streams:new_predicate_output_stream([Data]>>maybe_print_pre_pended(Out,Pre,Data),Stream)), + arc_set_stream(Stream,tty(true)), + %arc_set_stream(Stream,buffer(false)), + %undo(ignore(catch(close(Stream),_,true))),!, + setup_call_cleanup(true, + (with_output_to_each(Stream,once(Goal)),flush_output(Stream)), + ignore(catch(close(Stream),_,true))),!. +pre_pend_each_line0(Pre,Goal):- + with_output_to_each(string(Str),Goal)*->once((maybe_print_pre_pended(current_output,Pre,Str),nl_if_needed)). + + + +end_of_file. + + + +run_source_code(ShareVars, SourceCode, Vs, QQ):- + QQ = source_buffer(SourceCode,Vs),!, + %print(term=Sourcecode -> vs=Vs), + maplist(share_vars(Vs),ShareVars), + (\+ is_list(SourceCode) + -> mort(SourceCode) + ; maplist(mort,SourceCode)). + +run_source_code(ShareVars, Vs, QQ):- + QQ = source_buffer(SourceCode,Vs),!, + %print(term=Sourcecode -> vs=Vs), + maplist(share_vars(Vs),ShareVars), + (\+ is_list(SourceCode) + -> mort(SourceCode) + ; maplist(mort,SourceCode)). + + +%vars_to_dictation([_=Value|Gotten],TIn,TOut):- is_vm_map(Value),!, vars_to_dictation(Gotten,TIn,TOut). + +vars_to_dictation([Name=Value|Gotten],TIn,TOut):- !, + my_assertion(atom(Name)), + vars_to_dictation(Gotten,TIn,TMid), + to_prop_name(Name,UName), + tio_tersify(Value,ValueT),!, + put_dict(UName,TMid,ValueT,TOut). + +vars_to_dictation([NameValue|Gotten],TIn,TOut):- !, + vars_to_dictation(Gotten,TIn,TMid), + to_prop_name(NameValue,UName), + tio_tersify(NameValue,ValueT),!, + put_dict(UName,TMid,ValueT,TOut). + +vars_to_dictation([NameValue|Gotten],TIn,TOut):- compound(NameValue),compound_name_arguments(NameValue,Name,Value),!, + vars_to_dictation([Name=Value|Gotten],TIn,TOut). + +vars_to_dictation([],T,T). + +tio_tersify(Value,ValueT):- is_grid(Value),!,ValueT=_. +tio_tersify(Value,Value). +:- export(copy_qq_//1). + +copy_qq_([]) --> []. +copy_qq_([C|Cs]) --> [C], copy_qq_(Cs). + +:- export(copy_qq//1). +muarc:copy_qq(A) --> copy_qq_(Cs), {atom_codes(A, Cs)}. + +to_prop_name(Name=_,UName):- nonvar(Name),!,to_prop_name(Name,UName). +to_prop_name(Name,UName):- compound(Name),compound_name_arity(Name,F,_),!,to_prop_name(F,UName). +to_prop_name(Name,UName):- to_case_breaks(Name,Breaks),xtis_to_atomic(Breaks,UName). + +xtis_to_atomic([xti(Str,upper),xti(StrL,lower)|Breaks],StrO):- string_upper(Str,Str), + atom_chars(Str,CharsList),append(Left,[U],CharsList), + name(S1,Left),atomic_list_concat([S1,'_',U,StrL],'',StrUL),!, + xtis_to_atomic([xti(StrUL,lower)|Breaks],StrO). +xtis_to_atomic([],''). +xtis_to_atomic([xti(Str,_)],Lower):- downcase_atom(Str,Lower). +xtis_to_atomic([XTI|Breaks],Atomic):- + xtis_to_atomic([XTI],S1),xtis_to_atomic(Breaks,S2),!,atomic_list_concat([S1,S2],'_',Atomic). + +share_vars(Vs,Name=Value):- member(VName=VValue,Vs),VName==Name,!,(Value=VValue->true;trace_or_throw(cant(share_vars(Vs,Name=Value)))). +share_vars(_,Name=_):- string_concat('_',_,Name),!. % Hide some vars +share_vars(V,Name=Value):- fbug(missing(share_vars(V,Name=Value))),!. + + + +parse_expansions(_,Vs,Vs,Src,Src):- \+ compound(Src),!. +parse_expansions(_,Vs0,Vs,dont_include(Var),nop(dont_include(Var))):- + dont_include_var(Vs0,Vs,Var),!. +parse_expansions(F, Vs0,Vs,[Src0|Sourcecode0],[Src|Sourcecode]):- !, + parse_expansions(F, Vs0, Vs1, Src0, Src), + parse_expansions(F, Vs1, Vs, Sourcecode0, Sourcecode). +parse_expansions(FF, Vs0, Vs, Cmpd0, Cmpd):- + compound_name_arguments(Cmpd0,F,Args0), + parse_expansions([F|FF], Vs0, Vs, Args0,Args), + compound_name_arguments(Cmpd,F,Args). + +dont_include_var(Vs0,Vs,Var):- select(_=VV,Vs0,Vs),VV==Var,!. +dont_include_var(Vs,Vs,_). + +append_sets(Sets,Set):- append(Sets,List),list_to_set(List,Set). +append_sets(Set1,Set2,Set):- append(Set1,Set2,List),list_to_set(List,Set). +flatten_sets(Sets,Set):- flatten(Sets,List),list_to_set(List,Set). + +print_prop_val(N=V):- to_prop_name(N,P),format('~N\t\t'),print(P=V),nl. + + +ignore_numvars(Name='$VAR'(Name)). + + diff --git a/metta_vspace/pyswip-want/swi_flybase.pl b/metta_vspace/pyswip-want/swi_flybase.pl new file mode 100644 index 00000000..12a4e619 --- /dev/null +++ b/metta_vspace/pyswip-want/swi_flybase.pl @@ -0,0 +1,2 @@ + +:- ensure_loaded(flybase_main). \ No newline at end of file diff --git a/metta_vspace/pyswip-want/swi_support.pl b/metta_vspace/pyswip-want/swi_support.pl new file mode 100755 index 00000000..1854606e --- /dev/null +++ b/metta_vspace/pyswip-want/swi_support.pl @@ -0,0 +1,155 @@ + +:- set_prolog_flag(verbose_autoload, false). +:- set_prolog_flag(verbose, silent). +:- set_prolog_flag(verbose_load, silent). +:- assert((user:'$exported_op'(_,_,_):- fail)). +:- abolish((system:'$exported_op'/3)). +:- assert((system:'$exported_op'(_,_,_):- fail)). + +fbug(P) :- format("~N"), current_predicate(write_src/1),with_output_to(user_error,in_cmt(pp_fb(P))),!. +fbug(N=V) :- nonvar(N), !, fbdebug1(N:-V). +fbug(V) :- compound(V),functor(V,F,_A),!,fbdebug1(F:-V). +fbug(V) :- fbdebug1(debug:-V). +fbdebug1(Message) :- + % ISO Standard: flush_output/1 + flush_output(user_output), + flush_output(user_error), + catch(portray_clause(user_error,Message,[]),_,catch_ignore(format(user_error, "~n/* ~q. */~n", [Message]))), + %format(user_error, "~n/* ~p. */~n", [Message]), + flush_output(user_error). + + +swi_only(_):- is_scryer,!,fail. +swi_only(G):- call(G). +is_scryer:- \+ current_prolog_flag(libswipl,_). + + +:- create_prolog_flag(max_per_file,inf,[keep(true),access(read_write),type(term)]). +:- create_prolog_flag(max_disk_cache,inf,[keep(true),access(read_write),type(term)]). +:- create_prolog_flag(samples_per_million,inf,[keep(true),access(read_write),type(term)]). + +with_cwd(Dir,Goal):- Dir == '.',!,setup_call_cleanup(working_directory(X, X), Goal, working_directory(_,X)). +with_cwd(Dir,Goal):- setup_call_cleanup(working_directory(X, Dir), Goal, working_directory(_,X)). + +with_option([],G):-!,call(G). +with_option([H|T],G):- !, with_option(H,with_option(T,G)). +with_option(N=V,G):-!, with_option(N,V,G). +with_option(NV,G):- compound(NV), NV =..[N,V],!,with_option(N,V,G). +with_option(N,G):- with_option(N,true,G). + +with_option(N,V,G):- option_value(N,W), + setup_call_cleanup(set_option_value(N,V),G, set_option_value(N,W)). + + +was_option_value(N,V):- nb_current(N,VV), !,V=VV. +was_option_value(N,V):- current_prolog_flag(N,VV),!,V=VV. +was_option_value(N,V):- prolog_load_context(N,VV),!,V=VV. + +option_else(N,V,Else):- notrace(option_else0(N,V,Else)). +option_else0( N,V,_Else):- was_option_value(N,VV),!,VV=V. +option_else0(_N,V, Else):- !,V=Else. + +option_value(N,V):- notrace(option_value0(N,V)). +option_value0( N,V):- nonvar(V), option_value0( N,VV), !, p2m(VV,V1),p2m(V,V2),!,V1=V2.%equal_enough(V1,V2). +option_value0( N,V):- option_else0( N,V ,[]). + +p2mE(NA,NA):- \+ atom(NA),!. +p2mE(false,'False'). +p2mE(true,'True'). +p2mE(E,E). +set_option_value(N,V):- + set_option_value0(N,V). +set_option_value0(N,V):- + p2mE(V,VV),!, + catch(nb_setval(N,VV),E,fbug(E)), + catch(create_prolog_flag(N,V,[keep(false),access(read_write), type(term)]),E,fbug(E)), + catch(set_prolog_flag(N,V),E,fbug(E)),!. + +kaggle_arc:- \+ exists_directory('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/'), !. +%kaggle_arc:- !. +kaggle_arc:- + with_option(argv,['--libonly'], + with_cwd('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/', + ensure_loaded(kaggle_arc))). + +%:- ensure_loaded((read_obo2)). + +%:- kaggle_arc. + +symbol(X):- atom(X). +symbolic(X):- atomic(X). +symbol_number(S,N):- atom_number(S,N). +symbol_string(S,N):- atom_string(S,N). +symbol_chars(S,N):- atom_chars(S,N). +symbol_length(S,N):- atom_length(S,N). +symbol_concat(A,B,C):- atom_concat(A,B,C). +symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). +symbol_contains(T,TT):- atom_contains(T,TT). + +:- prolog_load_context(file, File), + absolute_file_name('../../data/ftp.flybase.org/releases/current/',Dir,[relative_to(File),file_type(directory)]), + asserta(ftp_data(Dir)). + +:- prolog_load_context(file, File), + absolute_file_name('./',Dir,[relative_to(File),file_type(directory)]), + asserta(pyswip_dir(Dir)). + + +:- prolog_load_context(directory, Dir), + asserta(user:library_directory(Dir)), + asserta(pyswip_metta_dir(Dir)). + +metta_python:- ensure_loaded(library(metta_python)). +:- if( (fail, \+ current_predicate(must_det_ll/1))). +% Calls the given Goal and throws an exception if Goal fails. +% Usage: must_det_ll(+Goal). +must_det_ll(M:Goal) :- !, must_det_ll(M,Goal). +must_det_ll(Goal) :- must_det_ll(user,Goal). + +must_det_ll(_M,Goal) :- var(Goal),!,throw(var_must_det_ll(Goal)),!. +must_det_ll(M,Goal) :- var(M),!,strip_module(Goal,M,NewGoal),!,must_det_ll(M,NewGoal). +must_det_ll(M,(GoalA,GoalB)) :- !, must_det_ll(M,GoalA), must_det_ll(M,GoalB). +must_det_ll(M,(GoalA->GoalB;GoalC)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). +must_det_ll(M,(GoalA*->GoalB;GoalC)) :- !, (call_ll(M,GoalA)*-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). +must_det_ll(M,(GoalA->GoalB)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB)). +must_det_ll(_,M:Goal) :- !, must_det_ll(M,Goal). +must_det_ll(M,Goal) :- + % Call Goal, succeed with true if Goal succeeds. + M:call(Goal) -> true ; % If Goal fails, throw an exception indicating that Goal failed. + throw(failed(Goal)). + +call_ll(_M,Goal):- var(Goal),!,throw(var_call_ll(Goal)),!. +call_ll(M,Goal):- var(M),!,strip_module(Goal,M,NewGoal),!,call_ll(M,NewGoal). +call_ll(M,Goal):- M:call(Goal). + +:- endif. + + +:- if( \+ current_predicate(if_t/2)). +if_t(If,Then):- call(If)->call(Then);true. +:-endif. + +:- if( \+ current_predicate(atom_contains/2)). +atom_contains(Atom1, SubAtom) :- sub_atom(Atom1, _Before, _, _After, SubAtom). +:- endif. + +:- if( \+ current_predicate(nop/1)). +nop(_). +:- endif. + +:- if( \+ current_predicate(catch_ignore/1)). +catch_ignore(G):- ignore(catch(G,E,catch_i((nl,writeq(causes(G,E)),nl)))). +:- endif. + +:- if( \+ current_predicate(catch_i/1)). +catch_i(G):- ignore(catch(G,_,true)). +:- endif. + +:- if( \+ current_predicate(add_history1/1)). +add_history1(_). +:- endif. + +:- if( \+ current_predicate(add_history/1)). +add_history(_). +:- endif. + diff --git a/metta_vspace/pyswip/metta_data.pl b/metta_vspace/pyswip/metta_data.pl index 48a9c382..93eff6b2 100755 --- a/metta_vspace/pyswip/metta_data.pl +++ b/metta_vspace/pyswip/metta_data.pl @@ -1,26 +1,11 @@ - typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). - is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. -is_syspred0(H,Len,Pred):- atom_concat(Mid,'-p',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. -is_syspred0(H,Len,Pred):- atom_concat(Mid,'-fn',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. %is_function(F):- atom(F). -is_metta_data_functor(Eq,F):- !, fail, - current_self(Self),is_metta_data_functor(Eq,Self,F). - -is_metta_data_functor(_Othr,H):- clause(is_data_functor(H),_). -is_metta_data_functor(Other,H):- H\=='Right', H\=='Something', - % metta_type(Other,H,_), % fail, - \+ metta_atom(Other,[H|_]), - \+ metta_defn(Other,[H|_],_), - \+ is_metta_builtin(H), - \+ is_comp_op(H,_), - \+ is_math_op(H,_,_). is_metta_data_functor(_Eq,_Othr,H):- clause(is_data_functor(H),_). is_metta_data_functor(Eq,Other,H):- H\=='Right', H\=='Something', % metta_type(Other,H,_), % fail, @@ -36,7 +21,7 @@ :- endif. -is_decl_type(ST):- dif(Arrow,'->'),Type=[Arrow|_],metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). +is_decl_type(ST):- metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). is_decl_type(ST):- \+ atom(ST),!,fail. is_decl_type('%Undefined%'). is_decl_type('Number'). @@ -64,8 +49,8 @@ args_violation(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !, fail. args_violation(Depth,Self,[A|Args],[L|List]):- once(arg_violation(Depth,Self,A,L) ; args_violation(Depth,Self,Args,List)). -arg_violation(Depth,Self,A,L):- \+ (get_type0(false,Depth,Self,A,T), \+ type_violation(T,L)). -%arg_violation(Depth,Self,A,_):- get_type(false,Depth,Self,A,_),!. +arg_violation(Depth,Self,A,L):- \+ (get_type0(Depth,Self,A,T), \+ type_violation(T,L)). +%arg_violation(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. type_violation(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!,fail. type_violation(T,L):- T\=L. @@ -75,13 +60,12 @@ \+ arg_violation(Depth,Self,Arg,Type), arg_conform(Depth,Self,Arg,Type). -args_conform(_,_,I,O):- I==[],!,O=I. -args_conform(_Dpth,_Slf,Args,ParamTypes):- ( \+ iz_conz(Args); \+ iz_conz(ParamTypes)), !. -args_conform(Depth,Self,[A|Args],[TypeSought|ParamTypes]):- arg_conform(Depth,Self,A,TypeSought) , args_conform(Depth,Self,Args,ParamTypes). -arg_conform(Depth,Self,Var,TypeSought):- var(Var),!,set_type(Depth,Self,Var,TypeSought),!. -arg_conform(Depth,Self,A,TypeSought):- get_type(false,Depth,Self,A,ArgType), type_conform(ArgType,TypeSought),!. -%arg_conform(_Dpth,_Slf,_,_). -%arg_conform(Depth,Self,A,_):- get_type(false,Depth,Self,A,_),!. + +args_conform(_Dpth,_Slf,Args,List):- ( \+ iz_conz(Args); \+ iz_conz(List)), !. +args_conform(Depth,Self,[A|Args],[L|List]):- arg_conform(Depth,Self,A,L) , args_conform(Depth,Self,Args,List). +arg_conform(Depth,Self,A,L):- get_type(Depth,Self,A,T), type_conform(T,L),!. +arg_conform(_Dpth,_Slf,_,_). +%arg_conform(Depth,Self,A,_):- get_type(Depth,Self,A,_),!. type_conform(T,L):- T=L,!. type_conform(T,L):- \+ \+ (is_nonspecific_type(T);is_nonspecific_type(L)),!. @@ -92,24 +76,20 @@ is_nonspecific_type('Atom'). is_nonspecific_type('Any'). -%get_type(false,Depth,Self,Val,Type):- get_type01(false,Depth,Self,Val,Type). -get_type(IsMT,Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(IsMT,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. -get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(false,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. -get_metatype(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(true,Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. - - +%get_type(Depth,Self,Val,Type):- get_type01(Depth,Self,Val,Type). +get_type(Depth,Self,Val,TypeO):- no_repeats(TypeT,(get_type9(Depth,Self,Val,Type),TypeT=Type)),Type=TypeO. -get_type9(false,_Dpth,_Slf, Val,Type):- var(Val),get_attr(Val,metta_vtype,Args),!,arg(3,Args,Type). -get_type9(IsMT,Depth,Self,Val,Type):- get_type0(IsMT,Depth,Self,Val,Type). -get_type9(IsMT,Depth,Self,Val,Type):- get_type1(IsMT,Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. -get_type9(IsMT,Depth,Self,Val,Type):- get_type2(IsMT,Depth,Self,Val,Type), ( is_list(Type)->! ; true). -get_type9(false,_Dpth,_Slf,_Vl,[]). +get_type9(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type9(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type9(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type), ground(Type),Type\==[], Type\==Val,!. +get_type9(Depth,Self,Val,Type):- get_type2(Depth,Self,Val,Type), ( is_list(Type)->! ; true). +get_type9(_Dpth,_Slf,_Vl,[]). -get_type2(false,Depth,_Slf,Type,Type):- Depth<1,!. -%get_type(false,Depth,Self,Val,Type):- is_debugging(eval), !, -% ftrace(get_type0(false,Depth,Self,Val,Type)). -get_type2(IsMT,Depth,Self,Val,Type):- get_type0(IsMT,Depth,Self,Val,Type). -get_type2(IsMT,Depth,Self,Val,Type):- get_type1(IsMT,Depth,Self,Val,Type). +get_type2(Depth,_Slf,Type,Type):- Depth<1,!. +%get_type(Depth,Self,Val,Type):- is_debugging(eval), !, +% ftrace(get_type0(Depth,Self,Val,Type)). +get_type2(Depth,Self,Val,Type):- get_type0(Depth,Self,Val,Type). +get_type2(Depth,Self,Val,Type):- get_type1(Depth,Self,Val,Type). is_space_type(Space,is_asserted_space):- was_asserted_space(Space),!. @@ -123,128 +103,122 @@ is_dynaspace(S):- py_named_space(S). is_dynaspace(S):- typed_list(S,'hyperon::space::DynSpace',_). % notrace( is_space_type(Expr,_)),!. - -get_type0(_,_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. -get_type0(IsMT,Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, - ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(IsMT,Depth2,Self,Val,Type))). -get_type0(IsMT,Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(IsMT,Depth,Self,Val,Type),!. -get_type0(IsMT,Depth,Self,Val,Type):- get_type03(IsMT,Depth,Self,Val,Type),!. - -get_type01(false,_Dpth,_Slf,Var,_):- var(Var),!. -get_type01(true,_Dpth,_Slf, [],'Expression'):- !. -get_type01(false,_Dpth,_Slf, [],'%Undefined%'):- !. - -get_type01(false,_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). - -get_type01(false,_Dpth,_Slf,Val,'Number'):- number(Val). -get_type01(false,_Dpth,_Slf,Val,'Integer'):- integer(Val). -get_type01(false,_Dpth,_Slf,Val,'Decimal'):- float(Val). -get_type01(false,_Dpth,_Slf,Val,'Rational'):- rational(Val). - -get_type01(_,_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. -get_type01(false,_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). -get_type01(false,_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. - -get_type01(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). -get_type01(false,_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). -get_type01(false,_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). -get_type01(IsMT,Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(IsMT,Depth2,Self,Val,Type). -%get_type01(false,_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). -get_type01(true,_Dpth,_Slf,_Val,'String'). -get_type01(true,_Dpth,_Slf,_Val,'Symbol'). - - - -get_type02(false,_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. -get_type02(false,_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. -get_type02(IsMT,Depth,Self,[Op|Expr],Type):- maplist(get_type(IsMT,Depth,Self),Expr,Types), +get_type0(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- is_dynaspace(Expr),!. +get_type0(Depth,Self,Expr,['StateMonad',Type]):- notrace( is_valid_nb_state(Expr)),!, 'get-state'(Expr,Val),!, + ((state_decltype(Expr,Type),nonvar(Type)); (Depth2 is Depth-1, get_type(Depth2,Self,Val,Type))). +get_type0(Depth,Self,Val,Type):- \+ compound(Val),!,get_type01(Depth,Self,Val,Type),!. +get_type0(Depth,Self,Val,Type):- get_type03(Depth,Self,Val,Type),!. + +get_type01(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type01(_Dpth,_Slf, [],'%Undefined%'):- !. +get_type01(_Dpth,_Slf,Val,'Number'):- number(Val). +get_type01(_Dpth,_Slf,Val,'Integer'):- integer(Val). +get_type01(_Dpth,_Slf,Val,'Decimal'):- float(Val). +get_type01(_Dpth,_Slf,Val,'Rational'):- rational(Val). +get_type01(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type01(_Dpth,_Slf,Val,Type):- string(Val),!,(Type='String';Type='Symbol'). +get_type01(_Dpth,_Slf,Expr,_):- \+ atom(Expr),!,fail. +get_type01(_Dpth,Self,Op,Type):- metta_type(Self,Op,Type). +get_type01(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],'@',Val). +get_type01(_Dpth,_Slf,Val,Type):- atomic_list_concat([Type,_|_],':',Val). +get_type01(Depth,Self,Op,Type):- Depth2 is Depth-1, eval_args(Depth2,Self,Op,Val),Op\=@=Val,!, get_type(Depth2,Self,Val,Type). +%get_type01(_Dpth,_Slf,Expr,'hyperon::space::DynSpace'):- \+ is_list(Expr), callable(Expr), is_space_type(Expr,_). +get_type01(_Dpth,_Slf,_Val,'String'). +get_type01(_Dpth,_Slf,_Val,'Symbol'). + + + +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr == Expr. +get_type02(_Dpth,Self,Expr,Type):- metta_type(Self,TExpr,Type), TExpr =@= Expr. +get_type02(Depth,Self,[Op|Expr],Type):- maplist(get_type(Depth,Self),Expr,Types), metta_type(Self,[Op|Types],Type). -get_type03(IsMT,Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), - get_type03(IsMT,Depth,Self,[Op|Args],Type1), - get_type(IsMT,Depth,Self,Arg,ArgType), +get_type03(Depth,Self,[[Op|Args]|Arg],Type):- symbol(Op), + get_type03(Depth,Self,[Op|Args],Type1), + get_type(Depth,Self,Arg,ArgType), ignore(sub_var(ArgType,Type1)->true;(sub_term(ST,Type1),var(ST),ST=ArgType)), last(Type1,Type). -get_type03(false,_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). -get_type03(false,Depth,Self,[Op|Args],Type):- symbol(Op), - get_operator_typedef(Self,Op,ParamTypes,RetType), +get_type03(_Dpth,_Slf,Cmpd,Type):-typed_list(Cmpd,Type,_List). +get_type03(Depth,Self,[Op|Args],Type):- symbol(Op), + get_operator_typedef(Self,Op,Params,RetType), % Fills in type variables when possible - ignore(args_conform(Depth,Self,Args,ParamTypes)), + ignore(args_conform(Depth,Self,Args,Params)), % unitests: arg violations should return () - (\+ args_violation(Depth,Self,Args,ParamTypes) -> Type=RetType ; (Type=[],!)). + (\+ args_violation(Depth,Self,Args,Params) -> Type=RetType ; (Type=[],!)). -get_type03(IsMT,Depth,Self,Expr,Type):- get_type02(IsMT,Depth,Self,Expr,Type). +get_type03(Depth,Self,Expr,Type):- get_type02(Depth,Self,Expr,Type). -get_type03(IsMT,Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, +get_type03(Depth,Self,EvalMe,Type):- needs_eval(EvalMe),Depth2 is Depth-1, eval_args(Depth2,Self,EvalMe,Val), \+ needs_eval(Val),!, - get_type(IsMT,Depth2,Self,Val,Type). + get_type(Depth2,Self,Val,Type). -get_type03(IsMT,Depth,Self,Expr,Type):- Depth2 is Depth-1, +get_type03(Depth,Self,Expr,Type):- Depth2 is Depth-1, eval_args(Depth2, Self,Expr,Val), Expr\=@=Val,!, - get_type(IsMT,Depth2,Self,Val,Type). + get_type(Depth2,Self,Val,Type). -get_type03(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). +get_type03(_Dpth,_Slf,Val,Type):- is_decl_type(Val),(Type=Val;Type='Type'). -get_type03(false,_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. +get_type03(_Dpth,_Slf,Expr,'Expression'):- is_list(Expr),!. -get_type03(IsMT,Depth,Self,List,Types):- List\==[], is_list(List), - Depth2 is Depth-1,maplist(get_type(IsMT,Depth2,Self),List,Types). +get_type03(Depth,Self,List,Types):- List\==[], is_list(List), + Depth2 is Depth-1,maplist(get_type(Depth2,Self),List,Types). -get_type03(false,_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. +get_type03(_Dpth,_Slf,Cmpd,Type):- compound(Cmpd),!, \+ ground(Cmpd),!,Type=[]. -%get_type0(false,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). -%get_type(false,Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(false,Depth2,Self,Type2,Type). -%get_type(false,Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). -%get_type(false,Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(false,Depth2,Self,T,Type),!, -% forall((member(Ele,List),nonvar(Ele)),get_type(false,Depth2,Self,Ele,Type)),!. -%get_type(false,Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. -%get_type0(false,_Dpth,_Slf,_,'%Undefined%'):- fail. +%get_type0(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +%get_type(Depth,Self,Op,Type):- nonvar(Op),metta_type(Self,Op,Type2),Depth2 is Depth-1,get_type(Depth2,Self,Type2,Type). +%get_type(Depth,Self,Op,Type):- Depth>0,nonvar(Op),metta_type(Self,Type,Op),!. %,!,last_element(List,Type). +%get_type(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type(Depth2,Self,Ele,Type)),!. +%get_type(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +%get_type0(_Dpth,_Slf,_,'%Undefined%'):- fail. state_decltype(Expr,Type):- functor(Expr,_,A),arg(A,Expr,Type),once(var(Type);is_decl_type(Type)). -get_type1(false,_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. -get_type1(false,_Dpth,_Slf,Val,'Number'):- number(Val),!. -get_type1(IsMT,Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, - get_type1(IsMT,Depth,Self,Val,Type). +get_type1(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. +get_type1(_Dpth,_Slf,Val,'Number'):- number(Val),!. +get_type1(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, + get_type1(Depth,Self,Val,Type). -get_type1(IsMT,Depth,Self,EvalMe,Type):- needs_eval(EvalMe), +get_type1(Depth,Self,EvalMe,Type):- needs_eval(EvalMe), eval_args(Depth,Self,EvalMe,Val), \+ needs_eval(Val),!, - get_type1(IsMT,Depth,Self,Val,Type). + get_type1(Depth,Self,Val,Type). -get_type1(false,_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), +get_type1(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), is_type(Type). -get_type1(false,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), is_type(Type). -get_type1(false,Depth,_Slf,Type,Type):- Depth<1,!. -get_type1(_True,_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). -get_type1(IsMT,Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(IsMT,Depth2,Self),List,Types). -get_type1(false,_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. -%get_type1(false,Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(false,Depth2,Self,Type2,Type). -%get_type1(false,Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). +get_type1(Depth,_Slf,Type,Type):- Depth<1,!. +get_type1(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). +get_type1(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type1(Depth2,Self),List,Types). +get_type1(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. +%get_type1(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type1(Depth2,Self,Type2,Type). +%get_type1(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). -get_type1(IsMT,Depth,Self,Expr,Type):-Depth2 is Depth-1, +get_type1(Depth,Self,Expr,Type):-Depth2 is Depth-1, eval_args(Depth2,Self,Expr,Val), - Expr\=@=Val,get_type1(IsMT,Depth2,Self,Val,Type). + Expr\=@=Val,get_type1(Depth2,Self,Val,Type). -get_type1(false,_Dpth,_Slf,Val,'String'):- string(Val),!. -get_type1(false,_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. -get_type1(false,_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. -%get_type1(false,_Dpth,_Slf,Val,'Symbol'):- symbol(Val). -%get_type1(false,Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(false,Depth2,Self,T,Type),!, -% forall((member(Ele,List),nonvar(Ele)),get_type1(false,Depth2,Self,Ele,Type)),!. -%get_type1(false,Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. -get_type1(false,_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. -get_type1(false,_Dpth,_Slf,_,'%Undefined%'). -%get_type1(false,Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(false,Depth2,Self,Val,Type). +get_type1(_Dpth,_Slf,Val,'String'):- string(Val),!. +get_type1(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. +get_type1(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. +get_type1(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). +%get_type1(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type1(Depth2,Self,T,Type),!, +% forall((member(Ele,List),nonvar(Ele)),get_type1(Depth2,Self,Ele,Type)),!. +%get_type1(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. +get_type1(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. +get_type1(_Dpth,_Slf,_,'%Undefined%'):- fail. +%get_type1(Depth,Self,Val,Type):- Depth2 is Depth-1, get_type0(Depth2,Self,Val,Type). @@ -253,68 +227,58 @@ as_prolog(Depth,Self,[H|T],[HH|TT]):- as_prolog(Depth,Self,H,HH),as_prolog(Depth,Self,T,TT). -as_prolog_e(_Dpth,_Slf,I,O):- \+ iz_conz(I),!,I=O. -as_prolog_e(Depth,Self,[H|T],O):- H=='::',!,as_prolog(Depth,Self,T,O). -as_prolog_e(Depth,Self,[H|T],[HH|TT]):- eval(Depth,Self,H,HH),as_prolog_e(Depth,Self,T,TT). - - -try_adjust_arg_types(_Eq,_RetType,Depth,Self,ParamTypes,X,Y):- - args_conform(Depth,Self,X,ParamTypes),!, - %set_type(Depth,Self,Y,RetType), - into_typed_args(Depth,Self,ParamTypes,X,Y). +try_adjust_arg_types(_Eq,RetType,Depth,Self,Params,X,Y):- + as_prolog(Depth,Self,X,M), + args_conform(Depth,Self,M,Params),!, + set_type(Depth,Self,Y,RetType), + into_typed_args(Depth,Self,Params,M,Y). %adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(eval_args(Depth,Self),X,Y). %adjust_args(Eq,RetType,Depth,Self,_,X,Y):- is_list(X), !, maplist(as_prolog(Depth,Self),X,Y),!. -:- nodebug(casting). - -adjust_args(_Eq,_RetType,Res,Res,_Depth,_Self,_Op,X,Y):- X==[],!,Y=[]. -adjust_args(Eq,RetType,Res,NewRes,Depth,Self,Op,X,Y):- - get_operator_typedef(Self,Op,ParamTypes,RetType),!, - show_failure(casting,try_adjust_arg_types(Eq,RetType,Depth,Self,[RetType|ParamTypes],[Res|X],[NewRes|Y])). -adjust_args(_Eq,_RetType,Res,Res,_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. -adjust_args(Eq,_RetType,Res,NewRes,Depth,Self,_,X,Y):- maplist(eval_99(Eq,_,Depth,Self),[Res|X],[NewRes|Y]),!. +adjust_args(_Eq,_RetType,_Depth,_Self,_Op,X,Y):- X==[],!,Y=[]. +adjust_args(_Eq,_RetType,_Dpth,Self,F,X,X):- (is_special_op(Self,F); \+ iz_conz(X)),!. +adjust_args(Eq,RetType,Depth,Self,Op,X,Y):- + %trace, + get_operator_typedef(Self,Op,Params,RetType), + try_adjust_arg_types(Eq,RetType,Depth,Self,Params,X,Y). +adjust_args(_Eq,_RetType,Depth,Self,_,X,Y):- as_prolog(Depth,Self,X,Y). -into_typed_args(_Dpth,_Slf,Sought,Before,Y):- (\+ iz_conz(Sought); \+ iz_conz(Before)),!, Before=Y. -into_typed_args(Depth,Self,[Sought|SoughtSought],[Before|BeforeBefore],[Y|YY]):- - into_typed_arg(Depth,Self,Sought,Before,Y), - into_typed_args(Depth,Self,SoughtSought,BeforeBefore,YY). +into_typed_args(_Dpth,_Slf,T,M,Y):- (\+ iz_conz(T); \+ iz_conz(M)),!, M=Y. +into_typed_args(Depth,Self,[T|TT],[M|MM],[Y|YY]):- + into_typed_arg(Depth,Self,T,M,Y), + into_typed_args(Depth,Self,TT,MM,YY). -into_typed_arg(Depth,Self,Sought,Before,Y):- into_typed_arg0(Depth,Self,Sought,Before,Y)*->true;Before=Y. +into_typed_arg(_Dpth,Self,T,M,Y):- var(M),!,put_attr(M,metta_type,Self=T),put_attr(Y,metta_type,Self=T),Y=M. +into_typed_arg(Depth,Self,T,M,Y):- into_typed_arg0(Depth,Self,T,M,Y)*->true;M=Y. -into_typed_arg0(Depth,Self,T,M,Y):- var(M),!,Y=M,put_attr(M,metta_vtype,typed_arg(Depth,Self,T)). -%into_typed_arg0(_Dpth,Self,Sought,Before,Y):- var(Before),!,put_attr(Before,metta_type,Self=Sought),put_attr(Y,metta_type,Self=Sought),Y=Before. -into_typed_arg0(Depth,Self,Sought,Before,Y):- var(Sought), !, get_type(false,Depth,Self,Before,Sought), - (wants_eval_kind(Sought)->eval_args(Depth,Self,Before,Y);Y=Before). +into_typed_arg0(Depth,Self,T,M,Y):- var(T), !, get_type(Depth,Self,M,T), + (wants_eval_kind(T)->eval_args(Depth,Self,M,Y);Y=M). -into_typed_arg0(Depth,Self,Sought,Before,Y):- is_pro_eval_kind(Sought),!,eval_args(Depth,Self,Before,Y). -into_typed_arg0(Depth,Self,Sought,Before,Y):- ground(Before),!, \+ arg_violation(Depth,Self,Before,Sought),Y=Before. -into_typed_arg0(_Dpth,_Slf,Sought,Before,Y):- is_non_eval_kind(Sought),!,Before=Y. -into_typed_arg0(Depth,Self,_,Before,Y):- eval_args(Depth,Self,Before,Y). +into_typed_arg0(Depth,Self,T,M,Y):- is_pro_eval_kind(T),!,eval_args(Depth,Self,M,Y). +into_typed_arg0(Depth,Self,T,M,Y):- ground(M),!, \+ arg_violation(Depth,Self,M,T),Y=M. +into_typed_arg0(_Dpth,_Slf,T,M,Y):- is_non_eval_kind(T),!,M=Y. +into_typed_arg0(Depth,Self,_,M,Y):- eval_args(Depth,Self,M,Y). set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) *->Was=Type - ; if_t(var(Var),put_attr(Var,metta_vtype,typed_arg(Depth,Self,Type))). + ; if_t(var(Var),put_attr(Var,metta_type,Self=Type)). -metta_vtype:attr_unify_hook(typed_arg(Depth,Self,Type),NewValue):- - get_type(Depth,Self,NewValue,Was), +metta_type:attr_unify_hook(Self=Type,NewValue):- + get_type(20,Self,NewValue,Was), can_assign(Was,Type). can_assign(Was,Type):- Was=Type,!. can_assign(Was,Type):- (is_nonspecific_type(Was);is_nonspecific_type(Type)),!. -can_assign(_Ws,_Typ):- fail. +can_assign(_Ws,_Typ). is_non_eval_kind(Type):- is_nonspecific_type(Type),!. -is_non_eval_kind('Type'). -is_non_eval_kind('Expression'). is_non_eval_kind('Atom'). is_pro_eval_kind('Number'). -%is_pro_eval_kind('Nat'). is_pro_eval_kind('Symbol'). is_pro_eval_kind('Bool'). -is_pro_eval_kind(Type):- \+ is_non_eval_kind(Type). is_feo_f('Cons'). @@ -330,6 +294,7 @@ %is_user_defined_goal(Self,[H|_]):- is_user_defined_head(Eq,Self,H). +is_user_defined_head(Other,H):- is_user_defined_head(=,Other,H). is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). @@ -345,38 +310,28 @@ is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). %is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). -is_user_defined_head(Other,H):- mnotrace(is_user_defined_head0(Other,H)). -is_user_defined_head0(Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Other,H). -is_user_defined_head0(Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Other,F). -is_user_defined_head0(Other,H):- is_user_defined_head_f(Other,H). - -is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,H). -is_user_defined_head_f(Other,H):- is_user_defined_head_f1(Other,[H|_]). - -%is_user_defined_head_f1(Other,H):- metta_type(Other,H,_). -%s_user_defined_head_f1(Other,H):- metta_atom(Other,[H|_]). -is_user_defined_head_f1(Other,H):- metta_defn(Other,[H|_],_). -%is_user_defined_head_f(_,H):- is_metta_builtin(H). - is_special_op(Op):- current_self(Self),is_special_op(Self,Op). is_special_op(_Slf,F):- \+ atom(F), \+ var(F), !, fail. -is_special_op(Self,Op):- get_operator_typedef(Self,Op,ParamTypes,_RetType), - maplist(is_non_eval_kind,ParamTypes). +is_special_op(Self,Op):- get_operator_typedef(Self,Op,Params,_RetType), + maplist(is_non_eval_kind,Params). is_special_op(_Slf,Op):- is_special_builtin(Op). -get_operator_typedef(Self,Op,ParamTypes,RetType):- - get_operator_typedef1(Self,Op,ParamTypes,RetType)*->true; - get_operator_typedef2(Self,Op,ParamTypes,RetType). -get_operator_typedef1(Self,Op,ParamTypes,RetType):- +get_operator_typedef(Self,Op,Params,RetType):- + get_operator_typedef1(Self,Op,Params,RetType)*->true; + get_operator_typedef2(Self,Op,Params,RetType). +get_operator_typedef1(Self,Op,Params,RetType):- metta_type(Self,Op,['->'|List]), - append(ParamTypes,[RetType],List). -get_operator_typedef2(Self,Op,ParamTypes,RetType):- - nop(fbug(missing(get_operator_typedef2(Self,Op,ParamTypes,RetType)))),!,fail. + append(Params,[RetType],List). +get_operator_typedef2(Self,Op,Params,RetType):- + nop(wdmsg(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. + +is_metta_data_functor(Eq,F):- + current_self(Self),is_metta_data_functor(Eq,Self,F). is_special_builtin('case'). diff --git a/metta_vspace/pyswip/metta_eval.pl b/metta_vspace/pyswip/metta_eval.pl index bcd8b5eb..a4657e79 100755 --- a/metta_vspace/pyswip/metta_eval.pl +++ b/metta_vspace/pyswip/metta_eval.pl @@ -1,6 +1,6 @@ % % post match modew -:- style_check(-singleton). +%:- style_check(-singleton). self_eval0(X):- \+ callable(X),!. self_eval0(X):- is_valid_nb_state(X),!. @@ -8,7 +8,7 @@ %self_eval0(X):- number(X),!. %self_eval0([]). self_eval0(X):- is_metta_declaration(X),!. -self_eval0([F|X]):- is_list(X),length(X,Len),!,nonvar(F), is_self_eval_l_fa(F,Len),!. +self_eval0(X):- is_list(X),!,fail. self_eval0(X):- typed_list(X,_,_),!. %self_eval0(X):- compound(X),!. %self_eval0(X):- is_ref(X),!,fail. @@ -16,8 +16,6 @@ self_eval0('Empty'). self_eval0(X):- atom(X),!, \+ nb_current(X,_),!. -is_self_eval_l_fa('S',1). - self_eval(X):- notrace(self_eval0(X)). :- set_prolog_flag(access_level,system). @@ -50,7 +48,7 @@ evals_to(XX,Y):- Y=@=XX,!. evals_to(XX,Y):- Y=='True',!, is_True(XX),!. -current_space(Space):- current_self(Space). +%current_self(Space):- nb_current(self_space,Space). do_expander('=',_,X,X):-!. do_expander(':',_,X,Y):- !, get_type(X,Y)*->X=Y. @@ -60,30 +58,26 @@ -eval_args(X,Y):- current_self(Self), eval_args(100,Self,X,Y). -eval_args(Depth,Self,X,Y):- eval_args('=',_,Depth,Self,X,Y). -eval_args(Eq,RetType,Depth,Self,X,Y):- eval(Eq,RetType,Depth,Self,X,Y). -/* +eval_args(X,Y):- current_self(Space), + rtrace_on_existence_error(eval(100,Space,X,Y)). +eval_args(Depth,Self,X,Y):- locally(set_prolog_flag(gc,false),rtrace_on_existence_error(eval(Depth,Self,X,Y))). eval_args(Eq,RetType,Depth,Self,X,Y):- locally(set_prolog_flag(gc,true), rtrace_on_existence_error( eval(Eq,RetType,Depth,Self,X,Y))). -*/ - %eval(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(eval(Eq,RetType,X)),fail. eval(Depth,Self,X,Y):- eval('=',_RetType,Depth,Self,X,Y). %eval(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. -eval(_Eq,_RetType,_Dpth,_Slf,X,Y):- notrace(var(X)),!,Y=X. - -eval(Eq,RetType,Depth,Self,X,Y):- notrace(nonvar(Y)),!, +eval(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!, get_type(Depth,Self,Y,RetType), !, eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). +eval(_Expander,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. -eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- notrace((T==[], number(X))),!, do_expander(Eq,RetType,X,YY),Y=[YY]. +eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], number(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. /* eval(Eq,RetType,Depth,Self,[F|X],Y):- @@ -99,7 +93,6 @@ %notrace(allow_repeats_eval_(X)), !, eval_11(Eq,RetType,Depth,Self,X,Y). -/* eval(Eq,RetType,Depth,Self,X,Y):- nop(notrace((no_repeats_var(YY)), D1 is Depth-1)),!, @@ -112,7 +105,7 @@ allow_repeats_eval_([F|_]):- atom(F),allow_repeats_eval_f(F). allow_repeats_eval_f('superpose'). allow_repeats_eval_f('collapse'). -*/ + debugging_metta(G):- notrace((is_debugging((eval))->ignore(G);true)). @@ -138,7 +131,7 @@ format('~` t~d~5|:', [EX]), format('~` t~d~8|', [DR]), forall(between(1,DR,_),write(' |')),write('-'),write(AR),with_indents(false,write_src(Term)), - format('~N')))))). + format('~N')))))). with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). @@ -150,13 +143,13 @@ flag_to_var(Flag,Var):- Flag=Var. set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). -set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,rtrace). -set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). -if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,fbug(E-->if_trace((Flag;true),Goal))))). -if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,fbug(E-->if_trace(Flag,Goal))))). +set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). +set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). -%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,fbug(SS=G)) ; fail. +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. maybe_efbug(_,G):- call(G). %efbug(P1,G):- call(P1,G). efbug(_,G):- call(G). @@ -172,74 +165,94 @@ is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. is_debugging(Flag):- debugging(Flag,TF),!,TF==true. is_debugging(Flag):- flag_to_var(Flag,Var), - (option_value(Var,rtrace)->true;(Flag\==Var -> is_debugging(Var))). + (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). :- nodebug(metta(overflow)). eval_99(Eq,RetType,Depth,Self,X,Y):- - eval(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Eq,RetVal,Depth,Self,X,Y). + eval_20(Eq,RetType,Depth,Self,X,Y)*->true;eval_failed(Depth,Self,X,Y). -eval_00(_Eq,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0), - debug(metta(eval))). -eval_00(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(_Expander,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +eval_00(_Expander,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. eval_00(Eq,RetType,Depth,Self,X,YO):- Depth2 is Depth-1, - Nth = nth(0), - copy_term(X, XX),!, - call_nth(eval_20(Eq,RetType,Depth2,Self,X,M),RNum), - (((RNum>1 , XX=@=M))-> (!,fail) ; true), - eval_01(Eq,RetType,Depth2,Self,XX,M,Y), - - notrace(eval_03(Eq,RetType,Depth2,Self,_XX,Y,YO)), - nop((arg(1,Nth,Was), Was1 is Was+1, nb_setarg(1,Nth,Was1))). - -eval_01(Eq,RetType,Depth,Self,XX,M,YO):- notrace(((M\=@=XX, \+ self_eval(M)))),!,eval_02(Eq,RetType,Depth,Self,XX,M,YO). -eval_01(_Eq,_RetType,_Depth,_Self,_,M,M). - - -eval_02(Eq,RetType,Depth,Self,_XX,M,YO):- eval_00(Eq,RetType,Depth,Self,M,Y)*-> Y=YO; YO=M. - - -eval_03(Eq,RetType,Depth2,Self,_XX,Y,YO):- - (if_or_else((fail,subst_args(Eq,RetType,Depth2,Self,Y,YO)), - if_or_else((fail,finish_eval(Eq,RetType,Depth2,Self,Y,YO)), + copy_term(X, XX), + eval_20(Eq,RetType,Depth,Self,X,M), + ((M\=@=XX, \+ self_eval(M))-> + eval_00(Eq,RetType,Depth2,Self,M,Y);Y=M), + once(if_or_else(subst_args(Eq,RetType,Depth2,Self,Y,YO), + if_or_else(finish_eval(Depth2,Self,Y,YO), Y=YO))). eval_11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. -%eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, D1 is Depth-1, eval_00(Eq,RetType,D1,Self,X,Y). +eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, + D1 is Depth-1, + eval_00(Eq,RetType,D1,Self,X,Y). eval_11(Eq,RetType,Depth,Self,X,Y):- - (( + notrace(( - notrace((flag(eval_num,EX,EX+1), + flag(eval_num,EX,EX+1), D1 is Depth-1, DR is 99-D1, - PrintRet = _)), + PrintRet = _, option_else('trace-length',Max,100), - notrace((if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), - nop(format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1])))))), + if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), nop(notrace(no_repeats_var(YY))), - if_t(DR<20,if_trace((eval),(PrintRet=1, indentq(DR,EX, '-->',eval(X))))), + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,eval(Self,X,'$VAR'('RET')),depth(DR)))))), Ret=retval(fail))), call_cleanup(( - (eval_00(Eq,RetType,D1,Self,X,Y)), + call(eval_00(Eq,RetType,D1,Self,X,Y)), notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), - (PrintRet==1 -> indentq(DR,EX,'<--',Ret) ; + (PrintRet==1 -> indentq(Depth,'<--'(EX,Ret)) ; notrace(ignore(((Y\=@=X, - if_t(DR<20,if_trace((eval),indentq(DR,EX,'<--',Ret))))))))), + if_t(DR<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret)))))))))), (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). + +eval_15(Eq,RetType,Depth,Self,X,Y):- !, + eval_20(Eq,RetType,Depth,Self,X,Y). + +eval_15(Eq,RetType,Depth,Self,X,Y):- + ((eval_20(Eq,RetType,Depth,Self,X,Y), + if_t(var(Y),dmsg((eval_20(Eq,RetType,Depth,Self,X,Y),var(Y)))), + nonvar(Y))*->true;(eval_failed(Depth,Self,X,Y),fail)). + + + + + + + + + + + + + :- discontiguous eval_20/6. :- discontiguous eval_40/6. +%:- discontiguous eval_30fz/5. +%:- discontiguous eval_31/5. +%:- discontiguous eval_60/5. + +eval_20(Eq,RetType,_Dpth,_Slf,Name,Y):- + atom(Name), !, + (nb_current(Name,X)->do_expander(Eq,RetType,X,Y); + Y = Name). + + +eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,do_expander(Eq,RetType,X,Y). % ================================================================= % ================================================================= @@ -249,14 +262,6 @@ % ================================================================= % ================================================================= -eval_20(Eq,RetType,Depth,Self,X,Y):- maybe_redirect(Eq,RetType,Depth,Self,X,Y), - fail, - eval_50(Eq,RetType,Depth,Self,X,Y). - -maybe_redirect(_Eq,_RetType,_Dpth,_Slf,X,_Y):- \+ is_list(X). -maybe_redirect(_Eq,_RetType,_Dpth,_Slf,[X|_],_Y):- \+ atom(X). -maybe_redirect(_Eq,_RetType,_Dpth,_Slf,X,_Y):- self_eval(X). - eval_20(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. %eval_20(Eq,RetType,_Dpth,Self,[X|T],Y):- T==[], atom(X), % \+ is_user_defined_head_f(Self,X), @@ -275,8 +280,6 @@ eval_20(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). -eval_20(_Eq,_RetType,_Depth,_Self,[ConceptNode,X],X):-notrace(( atom(ConceptNode),atom_concat(_Concept,'Node',ConceptNode))),!. - % ================================================================= % ================================================================= @@ -293,20 +296,29 @@ eval_20(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time_eval(eval(Cond),eval(Eq,RetType,Depth,Self,Cond,Res)). eval_20(Eq,RetType,Depth,Self,['print',Cond],Res):- !, eval(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). % !(println! $1) -eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, - maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), +eval_20(Eq,RetType,Depth,Self,['println!'|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),Cond,[Res|Out]), format('~N'),maplist(write_src,[Res|Out]),format('~N'). +eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), + last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). +%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),wdmsg(['trace!',A,B]=C),format('~N'). +%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),wdmsg(A),format('~N'). -eval_20(_Eq,_RetType,_Depth,_Self,['println'|Cond],'Empty'):- !, format('~N'),maplist(write_src_nl,Cond),format('~N'). +eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H), !,Y=List,do_expander(Eq,RetType,Y,YY). -eval_20(Eq,RetType,Depth,Self,['trace!',A|Cond],Res):- !, maplist(eval(Eq,RetType,Depth,Self),[A|Cond],[AA|Result]), - last(Result,Res), format('~N'),maplist(write_src,[AA]),format('~N'). +eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, + eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB), + append(AA,BB,OO). +eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), + ((eval(Eq,RetType,Depth,Self,A,AA), + eval(Eq,RetType,Depth,Self,B,BB))), + ((AA+BB)\=@=(A+B)), + eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. -%eval_20(Eq,RetType,Depth,Self,['trace!',A,B],C):- !,eval(Eq,RetType,Depth,Self,B,C),format('~N'),fbug(['trace!',A,B]=C),format('~N'). -%eval_20(Eq,RetType,_Dpth,_Slf,['trace!',A],A):- !, format('~N'),fbug(A),format('~N'). -eval_20(Eq,RetType,_Dpth,_Slf,List,YY):- notrace((is_list(List),maplist(self_eval,List),List=[H|_], \+ atom(H))), !,Y=List,do_expander(Eq,RetType,Y,YY). +%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + @@ -327,21 +339,21 @@ ['assertEqual',X,Y], (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), equal_enough_for_test(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected,YY]]). + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected(_)],YY]). eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, loonit_assert_source_tf( ['assertEqual',X,Y], (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), \+ equal_enough(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected,YY]]). + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). eval_20(Eq,RetType,Depth,Self,['assertEqualToResult',X,Y],RetVal):- !, loonit_assert_source_tf( ['assertEqualToResult',X,Y], (bagof_eval(Eq,RetType,Depth,Self,X,XX), sort(Y,YY)), equal_enough_for_test(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected,YY]]). + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). loonit_assert_source_tf(Src,Goal,Check,TF):- @@ -359,6 +371,10 @@ sort_result(Res,Res). unify_enough(L,L). +%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). +%unify_enough(C,L):- \+ compound(C),!,L=C. +%unify_enough(L,C):- \+ compound(C),!,L=C. unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). %unify_lists(C,L):- \+ compound(C),!,L=C. @@ -411,9 +427,14 @@ % ================================================================= % ================================================================= % ================================================================= - -eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). - +% do_metta(_Who,What,Where,PredDecl,_TF):- do_metta(Where,What, PredDecl). +/* +eval_20(Eq,RetType,_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). +eval_20(Eq,RetType,_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L1),length(L1,C1),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C1+C2. +eval_20(Eq,RetType,_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), + as_tf((metta_atom_iter_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). +*/ eval_20(Eq,RetType,Depth,Self,[Op,Space|Args],Res):- is_space_op(Op),!, eval_space_start(Eq,RetType,Depth,Self,[Op,Space|Args],Res). @@ -444,55 +465,100 @@ eval_space(Eq,RetType,_Dpth,_Slf,['get-atoms',Space],Atom):- !, ignore(RetType='Atom'), get_metta_atom_from(Space, Atom), check_returnval(Eq,RetType,Atom). +/* +get_atoms(_Dpth,_Slf,Other,Atom):- Other=='&self',!,get_metta_atom_from(Other, Atom). +% get_atoms_fail(Depth,Self,Other,Atom):- fail, is_asserted_space(Other),!, get_metta_atom(Eq,Other,Atom). +get_atoms(Depth,Self,Other,AtomO):- + into_space(Depth,Self,Other,Space), + once((space_to_Space(Depth,Self,Space,SpaceC), + into_listoid(SpaceC,AtomsL))), + %no_repeat_var(NRAtom), + call((member(Atom,AtomsL), + %Atom = NRAtom, + AtomO=Atom)). + +space_to_Space(_Dpth,_Slf,Space,SpaceC):- compound(Space),functor(Space,_,1),arg(1,Space,L),is_list(L),!,SpaceC=Space. +space_to_Space(_Dpth,_Slf,Space,SpaceC):- findall(Atom, get_metta_atom_from(Space, Atom),Atoms), + SpaceC = 'hyperon::space::DynSpace'(Atoms). +*/ + +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter(Eq,Depth,Space,Goal). +%eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- into_space(Self,Other,Space),!, (metta_atom_iter(Eq,Depth,Space,Goal)*->true;Else=Template). + % Match-ELSE eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template,Else],Template):- !, ((eval_space(Eq,RetType,Depth,Self,['match',Other,Goal,Template],Template), \+ return_empty([],Template))*->true;Template=Else). % Match-TEMPLATE + eval_space(Eq,_RetType,Depth,Self,['match',Other,Goal,Template],Res):- !, metta_atom_iter(Eq,Depth,Self,Other,Goal), Template=Res. - -metta_atom_iter(Eq,Depth,Self,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, - metta_defn(Eq,Other,[F|H],B). - + %finish_eval(Eq,RetType,Depth,Self,Template,Res). /* -metta_atom_iter(Eq,Depth,Self,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, - metta_defn(Eq,Other,[F|H],BB), - eval_sometimes(Eq,_RetType,Depth,Self,B,BB). + call(( % copy_term(Goal+Template,CGoal+CTemplate), + catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal),E, + ((wdmsg(catch_err(try_match(Eq,RetType,Depth,Self,Other,Goal))=E)), + rtrace(try_match(Eq,RetType,Depth,Self,Other,Goal)))))), + %print(Template), + finish_eval(Eq,RetType,Depth,Self,Template,Res). + +try_match(Eq,RetType,Depth,Self,Space,Goal):- !, + % into_space(Depth,Self,Other,Space), + metta_atom_iter(Eq,Depth,Self,Space,Goal). + +%try_match(Depth,Self,Other,Goal,_Template):- get_atoms(Depth,Self,Other,Goal). % Template=Res. +metta_atom_iter(Eq,Depth,Other,Goal):- + current_self(Self), + metta_atom_iter(Eq,Depth,Self,Other,Goal). + +metta_atom_iter_fail(Depth,_Slf,Other,[Equal,[F|H],B]):- fail, '=' == Equal,!, % trace, + call(metta_defn(Eq,Other,[F|HH],BB)), + once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)), + once(eval_until_unify(Eq,RetType,Depth,Other,B,BB)). */ -metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. -metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, - (Y==[] -> true ; - ( D2 is Depth -1, Y = [H|T], - metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). +metta_atom_iter(Eq,_Depth,_Slf,Other,[Equal,[F|H],B]):- Eq == Equal,!, % trace, + (metta_defn(Eq,Other,[F|H],B)). % once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). -%metta_atom_iter(Eq,Depth,_Slf,Other,X):- dcall0000000000(eval_args_true(Eq,_RetType,Depth,Other,X)). -metta_atom_iter(Eq,Depth,_Slf,Other,X):- - %copy_term(X,XX), - dcall0000000000(eval_args_true(Eq,_RetType,Depth,Other,XX)), X=XX. +%metta_atom_iter(Eq,Depth,_Slf,Other,[Equal,[F|H],B]):- '=' == Equal,!, % trace, + % call(metta_defn(Eq,Other,[F|HH],B)), once(eval_until_unify(Eq,RetType,Depth,Other,H,HH)). +metta_atom_iter(_Eq,Depth,_,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,Depth,Self,Other,[And|Y]):- atom(And), is_and(And),!, + (Y==[] -> true ; ( D2 is Depth -1, Y = [H|T], metta_atom_iter(Eq,D2,Self,Other,H),metta_atom_iter(Eq,D2,Self,Other,[And|T]))). +metta_atom_iter(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). -eval_args_true_r(Eq,RetType,Depth,Self,X,TF1):- - ((eval_ne(Eq,RetType,Depth,Self,X,TF1), \+ is_False(TF1)); - ( \+ is_False(TF1),metta_atom_true(Eq,Depth,Self,Self,X))). +% is this OK? +metta_atom_iter(Eq,Depth,Self,Other,H):- metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_iter(Eq,D2,Self,Other,B). +%metta_atom_iter_l2(Depth,Self,Other,H):- metta_atom_iter(Eq,Depth,Self,Other,H). +%$metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. -eval_args_true(Eq,RetType,Depth,Self,X):- - metta_atom_true(Eq,Depth,Self,Self,X); (nonvar(X),eval_ne(Eq,RetType,Depth,Self,X,TF1), TF1\=@=X, \+ is_False(TF1)). +eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). -% is this OK? -metta_atom_true(Eq,Depth,Self,Other,H):- nonvar(H), metta_defn(Eq,Other,H,B), D2 is Depth -1, metta_atom_true(Eq,D2,Self,Other,B). -metta_atom_true(Eq,_Dpth,_Slf,Other,H):- get_metta_atom(Eq,Other,H). +/* +metta_atom_iter(Eq,_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, + (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B='True')). +metta_atom_iter(Eq,Depth,_,_):- Depth<3,!,fail. +metta_atom_iter(Eq,_Dpth,_Slf,[]):-!. +metta_atom_iter(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). +metta_atom_iter(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter(Eq,D2,Other,B). +metta_atom_iter(Eq,_Dpth,_Slf,[And]):- is_and(And),!. +metta_atom_iter(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(Eq,D2,Self,X),metta_atom_iter(Eq,D2,Self,[And|Y]). +*/ +/* +metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). +metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). +metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. +metta_atom_iter2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. +*/ +%metta_atom_iter_ref(Other,[Eq,H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). metta_atom_iter_ref(Other,H,Ref):-clause(asserted_metta_atom(Other,H),true,Ref). -eval_sometimes(Eq,RetType,Depth,Self,B,BB):- eval_20(Eq,RetType,Depth,Self,B,BB)*->true;(trace,B=BB). -%eval_sometimes(_Eq,_RetType,_Depth,_Self,B,B) - % ================================================================= % ================================================================= % ================================================================= @@ -509,13 +575,13 @@ eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. % if there is nothing for case just treat like a collapse -eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- !, +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), once(eval(Eq,_RetType2,Depth,Self,A,_)), return_empty([],Empty). % Macro: case -eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- !, +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- must_det_ll(T==[]), into_case_list(CL,CASES), findall(Key-Value, @@ -543,6 +609,7 @@ ((member(Match-Value,Cases),AA=@=Match)->true; (member(Match-Value,Cases),AA = Match))). + %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. into_case_list(CASES,CASES):- is_list(CASES),!. is_case(AA,[AA,Value],Value):-!. is_case(AA,[AA|Value],Value). @@ -569,9 +636,26 @@ eval_20(Eq,RetType,Depth,Self,['collapse',List],Res):-!, bagof_eval(Eq,RetType,Depth,Self,List,Res). +eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call_ndet(Body,DET), + nb_setarg(1,Do_more_defs,false), + (DET==true -> ! ; true). + +eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +/* +eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. +eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, + bagof_eval(Eq,RetType,Depth,Self,List,Res), + length(Res,Len). +*/ %[superpose,[1,2,3]] eval_20(Eq,RetType,Depth,Self,['superpose',List],Res):- !, @@ -590,6 +674,13 @@ get_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_sa_p2(P3,E,Cmpd,SA). get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). +eval20_failed(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, + %max_counting(F,20), + member(Var,List), + eval(Eq,RetType,Depth,Self, Term, Res). sub_sterm(Sub,Sub). @@ -598,6 +689,11 @@ sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). sub_sterm1(_ ,[_|_]):-!,fail. sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). +eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- + notrace(( get_sa_p1(setarg,ST,Term,P1), + compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), + call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), + eval(Eq,RetType,Depth,Self, Term, Res). % ================================================================= @@ -607,8 +703,8 @@ % ================================================================= % ================================================================= % ================================================================ -eval_20(_Eq,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. -eval_20(_Eq,_RetType1,Depth,Self,['nop',Expr], Empty):- !, +eval_20(_Expander,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Expander,_RetType1,Depth,Self,['nop',Expr], Empty):- !, ignore(eval('=',_RetType2,Depth,Self,Expr,_)), return_empty([], Empty). @@ -617,6 +713,7 @@ %eval_ne(Eq,_RetType2,Depth,Self,Expr,_),!, return_empty([],Empty). +eval_20(_Expander,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). % ================================================================= @@ -665,7 +762,7 @@ -eval_until_unify(_Eq,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(_Expander,_RetType,_Dpth,_Slf,X,X):- !. eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). @@ -674,7 +771,7 @@ eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). -eval_until_eq(_Eq,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(_Expander,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), @@ -690,7 +787,7 @@ eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. -eval_in_steps_some_change(_Eq,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(_Expander,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, @@ -738,9 +835,15 @@ into_listoid(AtomC,Atom):- is_list(AtomC),!,Atom=AtomC. into_listoid(AtomC,Atom):- typed_list(AtomC,_,Atom),!. +:- if( \+ current_predicate( typed_list / 3 )). +typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). +:- endif. + %eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + %eval_20(Eq,RetType,Depth,Self,['flatten'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). + eval_20(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR_Y):- !, Atom=[CAR|_],!,do_expander(Eq,RetType,CAR,CAR_Y). eval_20(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR_Y):- !, Atom=[_|CDR],!,do_expander(Eq,RetType,CDR,CDR_Y). @@ -760,15 +863,14 @@ % ================================================================= % ================================================================= -eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, - call_in_shared_space(((eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), - eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret)))). +eval_20(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). eval_20(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, - call_in_shared_space(((eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad)))). + eval(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). eval_20(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, - call_in_shared_space((eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value))). + eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). + -call_in_shared_space(G):- call_in_thread(main,G). % eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). @@ -785,6 +887,18 @@ is_nb_state(G):- is_valid_nb_state(G) -> true ; is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). +/* +:- multifile(space_type_method/3). +:- dynamic(space_type_method/3). +space_type_method(is_nb_space,new_space,init_space). +space_type_method(is_nb_space,clear_space,clear_nb_atoms). +space_type_method(is_nb_space,add_atom,add_nb_atom). +space_type_method(is_nb_space,remove_atom,'change-space!'). +space_type_method(is_nb_space,replace_atom,replace_nb_atom). +space_type_method(is_nb_space,atom_count,atom_nb_count). +space_type_method(is_nb_space,get_atoms,'get-space'). +space_type_method(is_nb_space,atom_iter,atom_nb_iter). +*/ :- multifile(state_type_method/3). :- dynamic(state_type_method/3). @@ -811,13 +925,13 @@ % Find the original name of a given state state_original_name(State, Name) :- is_registered_state(Name), - call_in_shared_space(nb_current(Name, State)). + nb_current(Name, State). % Register and initialize a new state init_state(Name) :- State = 'State'(_,_), asserta(is_registered_state(Name)), - call_in_shared_space(nb_setval(Name, State)). + nb_setval(Name, State). % Change a value in a state 'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- @@ -863,10 +977,10 @@ eval_20(Eq,RetType,Depth,Self,['get-type',Val],TypeO):- !, get_type(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, do_expander(Eq,RetType,Type,TypeO). -eval_20(Eq,RetType,Depth,Self,['get-metatype',Val],TypeO):- !, get_metatype(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!, - do_expander(Eq,RetType,Type,TypeO). +eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). +eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). @@ -881,22 +995,21 @@ % ================================================================= % ================================================================= nb_bind(Name,Value):- nb_current(Name,Was),same_term(Value,Was),!. -nb_bind(Name,Value):- call_in_shared_space(nb_setval(Name,Value)),!. -eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- !, - (( into_space(Depth,Self,Other,Space), include_metta(Space,File),!,return_empty(Space,RetVal))), +nb_bind(Name,Value):- nb_setval(Name,Value),!. +eval_20(Eq,RetType,Depth,Self,['import!',Other,File],RetVal):- + (( into_space(Depth,Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal))), check_returnval(Eq,RetType,RetVal). %RetVal=[]. eval_20(Eq,RetType,_Depth,_Slf,['bind!',Other,['new-space']],RetVal):- atom(Other),!,assert(was_asserted_space(Other)), return_empty([],RetVal), check_returnval(Eq,RetType,RetVal). -eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- !, +eval_20(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- must_det_ll((into_name(Self,Other,Name),!,eval(Eq,RetType,Depth,Self,Expr,Value), nb_bind(Name,Value), return_empty(Value,RetVal))), check_returnval(Eq,RetType,RetVal). -eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- !, - must_det_ll((into_name(Self,Other,Name),nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), +eval_20(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- + must_det_ll((into_name(Self,Other,Name),!,nd_ignore((eval(Eq,RetType,Depth,Self,Expr,Value), set_option_value(Name,Value))), return_empty(Value,RetVal), check_returnval(Eq,RetType,RetVal))). -eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), - return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). +eval_20(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, must_det_ll((include_metta(Self,File), return_empty(Self,RetVal),check_returnval(Eq,RetType,RetVal))). nd_ignore(Goal):- call(Goal)*->true;true. @@ -918,7 +1031,6 @@ % ================================================================= is_True(T):- T\=='False',T\==[]. -%is_False(T):- once(T=='False';T==[]). is_and(S):- \+ atom(S),!,fail. is_and(','). @@ -927,33 +1039,20 @@ is_and(S,_):- \+ atom(S),!,fail. is_and('and','True'). is_and('and2','True'). -is_and('#COMMA','True'). -is_and(',' , 'EmptyType'). % is_and('And'). +is_and('#COMMA','True'). is_and(',','True'). % is_and('And'). -%eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, - %as_tf((eval_args(Eq,RetType,Depth,Self,X,True), - % eval_args(Eq,RetType,Depth,Self,Y,True)),TF). - -%eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, eval_args(Eq,RetType,Depth,Self,X,True). - -eval_20(Eq,RetType,_Dpth,_Slf,[And],TF):- is_and(And,_), !, \+ is_False(TF), check_returnval(Eq,RetType,TF), ignore(TF='True'). +eval_20(Eq,RetType,_Dpth,_Slf,[And],True):- is_and(And,True),!,check_returnval(Eq,RetType,True). +eval_20(Eq,RetType,Depth,Self,[And,X,Y],TF):- is_and(And,True),!, as_tf(( + eval_args(Eq,RetType,Depth,Self,X,True),eval_args(Eq,RetType,Depth,Self,Y,True)),TF). +eval_20(Eq,RetType,Depth,Self,[And,X],True):- is_and(And,True),!, + eval_args(Eq,RetType,Depth,Self,X,True). eval_20(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And,_True),!, - eval_args_true_r(Eq,RetType,Depth,Self,X,TF), - eval_args(Eq,RetType,Depth,Self,[And|Y],_TF). + eval_args(Eq,RetType,Depth,Self,X,TF1), \+ \+ is_True(TF1), + eval_args(Eq,RetType,Depth,Self,[And|Y],TF). eval_20(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, - as_tf((eval_args_true(Eq,RetType,Depth,Self,X);eval_args_true(Eq,RetType,Depth,Self,Y)),TF). - -eval_20(Eq,RetType,Depth,Self,['not',X],TF):- !, - as_tf(( \+ eval_args_true(Eq,RetType,Depth,Self,X)), TF). - -eval_20(Eq,RetType,Depth,Self,['number-of',X],N):- !, - bagof_eval(Eq,RetType,Depth,Self,X,ResL), - length(ResL,N), ignore(RetType='Number'). + as_tf((eval_args(Eq,RetType,Depth,Self,X,'True');eval_args(Eq,RetType,Depth,Self,Y,'True')),TF). -eval_20(Eq,RetType,Depth,Self,['number-of',X,N],TF):- !, - bagof_eval(Eq,RetType,Depth,Self,X,ResL), - length(ResL,N), true_type(Eq,RetType,TF). % ================================================================= @@ -966,70 +1065,72 @@ eval20_failked(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(V),is_list(VI),!, maplist(eval(Eq,RetType,Depth,Self),VI,VO). -eval20_failed(Eq,RetType,Depth,Self, Term, Res):- - notrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, - compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), - call(P1,Var))), !, - %max_counting(F,20), - member(Var,List), - eval(Eq,RetType,Depth,Self, Term, Res). -eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- - notrace(( get_sa_p1(setarg,ST,Term,P1), - compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), - call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), - eval(Eq,RetType,Depth,Self, Term, Res). % ================================================================= % ================================================================= % ================================================================= -% MeTTaLog Extras +% EVAL FAILED % ================================================================= % ================================================================= % ================================================================= +eval_20(Eq,RetType,Depth,Self,X,Y):- + (eval_40(Eq,RetType,Depth,Self,X,M)*-> + M=Y ; + % finish_eval(Depth,Self,M,Y); + (eval_failed(Depth,Self,X,Y)*->true;X=Y)). -eval_20(_Eq,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). -eval_20(Eq,RetType,Depth,Self,['eval',S], Res):- !, eval(Eq,RetType,Depth,Self,S, Res). -eval_20(Eq,RetType,Depth,Self,['limit!',NE,S], Res):- !, - eval_20(Eq,RetType,Depth,Self,NE, N),!, - limit(N,eval_ne(Eq,RetType,Depth,Self,S, Res)). +eval_failed(Depth,Self,T,TT):- + finish_eval(Depth,Self,T,TT). -eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- - Do_more_defs = do_more_defs(true), - clause(eval_21(Eq,RetType,Depth,Self,PredDecl,Res),Body), - Do_more_defs == do_more_defs(true), - call_ndet(Body,DET), - nb_setarg(1,Do_more_defs,false), - (DET==true -> ! ; true). +finish_eval(_Dpth,_Slf,T,TT):- var(T),!,TT=T. +finish_eval(_Dpth,_Slf,[],[]):-!. +%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),notrace([F|LESS]\==Res),!. +%finish_eval(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. +finish_eval(Depth,Self,[H|T],[HH|TT]):- !, + eval(Depth,Self,H,HH), + finish_eval(Depth,Self,T,TT). +finish_eval(Depth,Self,T,TT):- eval(Depth,Self,T,TT). + %eval(Eq,RetType,Depth,Self,X,Y):- eval_20(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. -eval_21(Eq,RetType,Depth,Self,['CollapseCardinality',List],Len):-!, - bagof_eval(Eq,RetType,Depth,Self,List,Res), - length(Res,Len). -/* -eval_21(_Eq,_RetType,_Depth,_Self,['TupleCount', [N]],N):- number(N),!. +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +%eval_20(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). +%eval_20(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +% Kills zero arity functions eval_20(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval(Eq,RetType,Depth,Self,X,Y). -eval_21(Eq,RetType,Depth,Self,['TupleCount',List],Len):-!, - bagof_eval(Eq,RetType,Depth,Self,List,Res), - length(Res,Len). -*/ +/* +into_values(List,Many):- List==[],!,Many=[]. +into_values([X|List],Many):- List==[],is_list(X),!,Many=X. +into_values(Many,Many). +eval_40(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. +*/ +% Macro Functions +%eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. +eval_40(_Expander,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, + Depth>1, + notrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + eval(Eq,RetType,Depth,Self,SSub,Repl), + notrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + eval(Eq,RetType,Depth,Self,[F|Temp],Res). -eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). -eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). - -eval_20(Eq,_ListOfRetType,Depth,Self,['TupleConcat',A,B],OO):- fail, !, - eval(Eq,RetType,Depth,Self,A,AA), - eval(Eq,RetType,Depth,Self,B,BB), - append(AA,BB,OO). -eval_20(Eq,OuterRetType,Depth,Self,['range',A,B],OO):- (is_list(A);is_list(B)), - ((eval(Eq,RetType,Depth,Self,A,AA), - eval(Eq,RetType,Depth,Self,B,BB))), - ((AA+BB)\=@=(A+B)), - eval_20(Eq,OuterRetType,Depth,Self,['range',AA,BB],OO),!. -%eval_20(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(eval(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). +% ================================================================= +% ================================================================= +% ================================================================= +% PLUS/MINUS +% ================================================================= +% ================================================================= +% ================================================================= +eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). +eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, + eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). % ================================================================= % ================================================================= @@ -1039,133 +1140,38 @@ % ================================================================= % ================================================================= -eval_20(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), +eval_40(Eq,RetType,Depth,Self,['length',L],Res):- !, eval(Depth,Self,L,LL), (is_list(LL)->length(LL,Res);Res=1), check_returnval(Eq,RetType,Res). -eval_20(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). -eval_20(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). -eval_20(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). - - - - -eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1],ResL):- !, - maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ResL). -eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1,ArgL2],ResL):- !, - maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ResL). -eval_20(Eq,RetType,Depth,Self,['maplist!',Pred,ArgL1,ArgL2,ArgL3],ResL):- !, - maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ArgL3,ResL). - - eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Res):- - eval(Eq,RetType,Depth,Self,[Pred,Arg1],Res). - eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Arg2,Res):- - eval(Eq,RetType,Depth,Self,[Pred,Arg1,Arg2],Res). - eval_pred(Eq,RetType,Depth,Self,Pred,Arg1,Arg2,Arg3,Res):- - eval(Eq,RetType,Depth,Self,[Pred,Arg1,Arg2,Arg3],Res). - -eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1],ResL):- !, - concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ResL). -eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1,ArgL2],ResL):- !, - concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ResL). -eval_20(Eq,RetType,Depth,Self,['concurrent-maplist!',Pred,ArgL1,ArgL2,ArgL3],ResL):- !, - concurrent_maplist(eval_pred(Eq,RetType,Depth,Self,Pred),ArgL1,ArgL2,ArgL3,ResL). -eval_20(Eq,RetType,Depth,Self,['concurrent-forall!',Gen,Test|Options],Empty):- !, - maplist(s2p,Options,POptions), - call(thread:concurrent_forall( - user:eval_ne(Eq,RetType,Depth,Self,Gen,_), - user:forall(eval(Eq,RetType,Depth,Self,Test,_),true), - POptions)), - return_empty([],Empty). -eval_20(Eq,RetType,Depth,Self,['hyperpose',ArgL1],ResL):- !, concurrent_maplist(eval(Eq,RetType,Depth,Self),ArgL1,ResL). +eval_40(Eq,RetType,_Dpth,_Slf,['arity',F,A],TF):- !,as_tf(current_predicate(F/A),TF),check_returnval(Eq,RetType,TF). +eval_40(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, eval(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1),check_returnval(Eq,RetType,Res). +eval_40(Eq,RetType,_Dpth,_Slf,['make_list',List],MettaList):- !, into_metta_cons(List,MettaList),check_returnval(Eq,RetType,MettaList). +% user defined function +eval_40(Eq,RetType,Depth,Self,[H|PredDecl],Res):- + notrace(is_user_defined_head(Self,H)),!, + eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). -eval_20(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, +eval_40(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, suggest_type(RetType,'Bool'), eq_unify(Eq,_SharedType, X, Y, Res). -eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. -eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). suggest_type(_RetType,_Bool). +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- is_special_op(AE),!, + eval_70(Eq,RetType,Depth,Self,[AE|More],Res), + check_returnval(Eq,RetType,Res). -true_type(_,_,_). - -eval_20(Eq,RetType,Depth,Self,PredDecl,Res):- - if_or_else(eval_30(Eq,RetType,Depth,Self,PredDecl,Res), - if_or_else(eval_40(Eq,RetType,Depth,Self,PredDecl,Res), - if_or_else(eval_60(Eq,RetType,Depth,Self,PredDecl,Res), - (Nth==nth(0),fail,eval_failed(Eq,RetType,Depth,Self,PredDecl,Res))))). - -eval_30(Eq,RetType,Depth,Self,PredDecl,Res):- - Do_more_defs = do_more_defs(true), - clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), - (arg(1,Do_more_defs,true)-> true ; (!,fail)), - call_ndet(show_ndet(Body),DET), - (DET==true -> ! ; true), - nb_setarg(1,Do_more_defs,false). - - %trace, - -%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- fail. -eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_math(Eq,RetType,Depth,Self,PredDecl,Res). -eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_sys_predicate(Eq,RetType,Depth,Self,PredDecl,Res). -eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_sys_function(Eq,RetType,Depth,Self,PredDecl,Res). -%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- fail. - -% ================================================================= -% ================================================================= -% ================================================================= -% EVAL FAILED -% ================================================================= -% ================================================================= -% ================================================================= - - -eval_failed(Eq,RetVal,Depth,Self,T,TT):- - finish_eval(Eq,RetVal,Depth,Self,T,TT),!. - -finish_eval(_Eq,_RetVal,_Dpth,_Slf,T,TT):- \+ compound(T),!,TT=T. -%finish_eval(Eq,RetVal,_Dpth,_Slf,[],[]):-!. -%finish_eval(Eq,RetVal,_Dpth,_Slf,[F|LESS],Res):- once(Eq,RetVal,eval_selfless(Eq,RetVal,[F|LESS],Res)),notrace(Eq,RetVal,[F|LESS]\==Res),!. -%finish_eval(Eq,RetVal,Depth,Self,[V|Nil],[O]):- Nil==[], once(Eq,RetVal,eval(Eq,RetVal,Eq,RetType,Depth,Self,V,O)),V\=@=O,!. -finish_eval(Eq,RetVal,Depth,Self,[H|T],[HH|TT]):- !, - eval(Eq,RetVal,Depth,Self,H,HH), - finish_eval(Eq,RetVal,Depth,Self,T,TT). -finish_eval(Eq,RetVal,Depth,Self,T,TT):- eval(Eq,RetVal,Depth,Self,T,TT). - - - :- discontiguous eval_40/6. - -% Macro Functions -%eval_40(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. -eval_40_fail(_Eq,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). -eval_40_fail(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, - Depth>1, - notrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), - eval(Eq,RetType,Depth,Self,SSub,Repl), - notrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), - eval(Eq,RetType,Depth,Self,[F|Temp],Res). -% ================================================================= -% ================================================================= -% ================================================================= -% PLUS/MINUS -% ================================================================= -% ================================================================= -% ================================================================= -eval_40(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, - eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). -eval_40(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, - eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). -eval_40(Eq,RetType,Depth,Self,['*',N1,N2],N):- number(N1),!, - eval(Eq,RetType,Depth,Self,N2,N2Res), notrace(catch_err(N is N1*N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail))). - -eval_40_fail_50(Eq,RetType,Depth,Self,X,Y):- - fail, - eval_50(Eq,RetType,Depth,Self,X,Y). +eval_40(Eq,RetType,Depth,Self,[AE|More],Res):- + maplist(must_eval_args(Eq,_,Depth,Self),More,Adjusted), + eval_70(Eq,RetType,Depth,Self,[AE|Adjusted],Res), + check_returnval(Eq,RetType,Res). must_eval_args(Eq,RetType,Depth,Self,More,Adjusted):- (eval_args(Eq,RetType,Depth,Self,More,Adjusted)*->true; @@ -1176,30 +1182,14 @@ (trace, throw(must_eval_args(Eq,RetType,Depth,Self,More,Adjusted))))))). -% user defined function -eval_40_fail_to_60(Eq,RetType,Depth,Self,[H|PredDecl],Res):- fail, - %notrace(is_user_defined_head(Self,H)),!, - eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). - - -eval_50(Eq,RetType,_Dpth,_Slf,Name,Y):- atom(Name), !, - (nb_current(Name,X)-> do_expander(Eq,RetType,X,Y); Y = Name). - -eval_50(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. - -eval_50(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( (Eq \== ('='), Eq \== ('match'))) ,!, - if_or_else(call(Eq,'=',RetType,Depth,Self,X,Y),eval_51(Eq,RetType,Depth,Self,X,Y)). -eval_50(Eq,RetType,Depth,Self,X,Y):- eval_51(Eq,RetType,Depth,Self,X,Y). -eval_51(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, - eval(Eq,RetType,Depth,Self,VI,VM), - ( VM\==VI -> eval(Eq,RetType,Depth,Self,[V|VM],VVO) ; - (eval(Eq,RetType,Depth,Self,V,VV), (V\==VV -> eval(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). - -eval_51(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,do_expander(Eq,RetType,X,Y). +eval_70(Eq,RetType,Depth,Self,PredDecl,Res):- + Do_more_defs = do_more_defs(true), + clause(eval_80(Eq,RetType,Depth,Self,PredDecl,Res),Body), + Do_more_defs == do_more_defs(true), + call(Body),nb_setarg(1,Do_more_defs,false). -eval_51(Eq,_RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(eval(Eq,_ArgRetType,Depth,Self),VI,VO). % ================================================================= % ================================================================= @@ -1210,29 +1200,24 @@ % ================================================================= is_system_pred(S):- atom(S),atom_concat(_,'!',S). -eval_math(_Eq,_RetType,_Dpth,_Slf,LESS,Res):- + + +eval_80(_Expander,_RetType,_Dpth,_Slf,LESS,Res):- notrace((ground(LESS),once((eval_selfless(LESS,Res),notrace(LESS\==Res))))),!. % predicate inherited by system -eval_sys_predicate(Eq,RetType,_Depth,Self,[AE|More],TF):- - once((is_system_pred(AE), +eval_80(Eq,RetType,_Depth,_Self,[AE|More],TF):- + is_system_pred(AE), length(More,Len), - is_syspred(AE,Len,Pred))), - \+ (atom(AE), atom_concat(_,'-fn',AE)), - current_predicate(Pred/Len), - %trace, ls,length(More,Len), - notrace( \+ is_user_defined_goal(Self,[AE|More]) ),!, - %show_ndet(adjust_args_mp(Eq,RetType,Depth,Self,Pred,Len,AE,More,Adjusted)), - % + is_syspred(AE,Len,Pred), + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %adjust_args(Depth,Self,AE,More,Adjusted), More = Adjusted, - show_ndet(efbug(show_call,eval_call(catch_warn(apply(Pred,Adjusted)),TF))), - show_ndet(check_returnval(Eq,RetType,TF)). - -show_ndet(G):- call(G). -%show_ndet(G):- call_ndet(G,DET),(DET==true -> ! ; dmsg(show_ndet(G))). + catch_warn(efbug(show_call,eval_call(apply(Pred,Adjusted),TF))), + check_returnval(Eq,RetType,TF). -:- if( \+ current_predicate( is_user_defined_goal / 2 )). +:- if( \+ current_predicate( adjust_args / 2 )). :- discontiguous eval_80/6. @@ -1241,40 +1226,18 @@ :- endif. -adjust_args_mp(_Eq,_RetType,Res,Res,_Depth,_Self,_Pred,_Len,_AE,Args,Adjusted):- Args==[],!,Adjusted=Args. -adjust_args_mp(Eq,RetType,Res,NewRes,Depth,Self,Pred,Len,AE,Args,Adjusted):- - functor(P,Pred,Len), predicate_property(P,meta_predicate(Needs)), - account_needs(1,Needs,Args,More),!, - adjust_args(Eq,RetType,Res,NewRes,Depth,Self,AE,More,Adjusted). -adjust_args_mp(Eq,RetType,Res,NewRes,Depth,Self,_Pred,_Len,AE,Args,Adjusted):- - adjust_args(Eq,RetType,Res,NewRes,Depth,Self,AE,Args,Adjusted). - -acct(0,A,call(eval(A,_))). -acct(':',A,call(eval(A,_))). -acct(_,A,A). -account_needs(_,_,[],[]). -account_needs(N,Needs,[A|Args],[M|More]):- arg(N,Needs,What),!, - acct(What,A,M),plus(1,N,NP1), - account_needs(NP1,Needs,Args,More). - -:- nodebug(metta(call)). - eval_call(S,TF):- s2p(S,P), !, - %if_trace(call,dmsg(eval_call_S(S,'$VAR'('TF')))),!, - if_trace(call,dmsg(eval_call_P(P,'$VAR'('TF')))),!, - as_tf(P,TF). + dmsg(eval_call(P,'$VAR'('TF'))),as_tf(P,TF). -eval_sys_function(Eq,RetType,_Depth,Self,[AE|More],Res):- +eval_80(Eq,RetType,_Depth,_Self,[AE|More],Res):- is_system_pred(AE), length([AE|More],Len), is_syspred(AE,Len,Pred), - \+ (atom(AE), atom_concat(_,'-p',AE)), - notrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, %adjust_args(Depth,Self,AE,More,Adjusted),!, - %adjust_args_mp(Eq,RetType,Depth,Self,Pred,Len,AE,More,Adjusted), More = Adjusted, - append(Adjusted,[Res],Args), + append(Adjusted,[Res],Args),!, efbug(show_call,catch_warn(apply(Pred,Args))), check_returnval(Eq,RetType,Res). @@ -1282,8 +1245,12 @@ check_returnval(_,_RetType,_TF). :- endif. +:- if( \+ current_predicate( adjust_args / 5 )). +adjust_args(_Depth,_Self,_V,VI,VI). +:- endif. -%eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- eval_67(Eq,RetType,Depth,Self,PredDecl,Res). +eval_80(Eq,RetType,Depth,Self,PredDecl,Res):- + eval_67(Eq,RetType,Depth,Self,PredDecl,Res). @@ -1294,8 +1261,8 @@ -catch_warn(G):- quietly(catch(G,E,(fbug(catch_warn(G)-->E),fail))). -catch_nowarn(G):- quietly(catch(G,error(_,_),fail)). +catch_warn(G):- quietly(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). +catch_nowarn(G):- quietly(catch_err(G,error(_,_),fail)). as_tf(G,TF):- G\=[_|_], catch_nowarn((call(G)*->TF='True';TF='False')). @@ -1322,21 +1289,8 @@ % ================================================================= % ================================================================= -call_ndet(Goal,DET):- call(Goal),deterministic(DET),(DET==true->!;true). +call_ndet(Goal,DET):- call(Goal),deterministic(DET). -/* -eval_60(Eq,_RetT,Depth,Self,[H|Args0],B):- - \+ get_operator_typedef1(Self,H,_ParamTypes,_RType),!, - maplist(eval_99(Eq,_,Depth,Self),Args0,Args), - eval_65(Eq,RetType,Depth,Self,[H|Args],B),!. -*/ -/* -eval_60(Eq,_RetT,Depth,Self,[H|Args0],B):- symbol(H), - \+ notrace((is_user_defined_head_f(Self,H))), - \+ get_operator_typedef1(Self,H,_ParamTypes,_RType),!, - maplist(eval_99(Eq,_,Depth,Self),Args0,Args), - eval_65(Eq,RetType,Depth,Self,[H|Args],B),!. -*/ eval_60(Eq,RetType,Depth,Self,H,B):- (eval_64(Eq,RetType,Depth,Self,H,B)*->true; (fail,eval_67(Eq,RetType,Depth,Self,H,B))). @@ -1344,7 +1298,7 @@ %eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Eq,Self,H,B). eval_64(Eq,_RetType,_Dpth,Self,H,B):- - Eq=='match',!,call(metta_atom(Self,H)),B=H. + Eq='match', call(metta_atom(Self,H)),B=H. eval_64(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- @@ -1353,20 +1307,18 @@ [Left|T1] \=@= [[H|Start]|T1], eval(Eq,RetType,Depth,Self,[Left|T1],Y). -eval_64(Eq,RetType,Depth,Self,[H|Args0],B):- % no weird template matchers +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- % no weird template matchers % forall(metta_defn(Eq,Self,[H|Template],_), % maplist(not_template_arg,Template)), - Eq==('='), - adjust_args(Eq,RetType,_,_,Depth,Self,H,Args0,Args), - (metta_defn(Eq,Self,[H|Args],B0)*->true;([H|Args]=B0)), + Eq='=', + (metta_defn(Eq,Self,[H|Args],B0)*->true;(fail,[H|Args]=B0)), light_eval(Depth,Self,B0,B). - %(eval(Eq,RetType,Depth,Self,B,Y);eval_match(Eq,RetType,Depth,Self,Y)). - + %(eval(Eq,RetType,Depth,Self,B,Y);metta_atom_iter(Depth,Self,Y)). % Use the first template match -eval_65(Eq,_RetType,Depth,Self,[H|Args],B):- fail, +eval_64(Eq,_RetType,Depth,Self,[H|Args],B):- fail, Eq='=', (metta_defn(Eq,Self,[H|Template],B0),Args=Template), - light_eval(Depth,Self,B0,B). + light_eval(Depth,Self,B0,B). light_eval(_Depth,_Self,B,B). @@ -1413,7 +1365,7 @@ %bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. -bagof_eval(_Eq,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(_Expander,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. bagof_eval(Eq,RetType,Depth,Self,X,L):- findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). @@ -1422,8 +1374,9 @@ sort(L,S). -eval_ne(Eq,RetType,Depth,Self,X,O):- - eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E), O=E. +eval_ne(Eq,RetType,Depth,Self,X,E):- + eval(Eq,RetType,Depth,Self,X,E), \+ var(E), \+ is_empty(E). + :- ensure_loaded(metta_subst). diff --git a/metta_vspace/pyswip/metta_interp.pl b/metta_vspace/pyswip/metta_interp.pl index 30ff310c..f59efaf7 100755 --- a/metta_vspace/pyswip/metta_interp.pl +++ b/metta_vspace/pyswip/metta_interp.pl @@ -422,41 +422,20 @@ must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). load_metta_file_stream(Filename,Self,In):- - once((is_file_stream_and_size(In, Size) , Size>102400) -> P2 = read_sform2 ; P2 = read_metta2), with_option(loading_file,Filename, %current_exec_file(Filename), ((must_det_ll(( set_exec_num(Filename,1), load_answer_file(Filename), set_exec_num(Filename,0))), - load_metta_file_stream_fast(Size,P2,Filename,Self,In)))). - - - -accept_line(_Self,end_of_file):-!. -accept_line(Self,I):- normalize_space(string(Str),I),!,accept_line2(Self,Str),!. - -accept_line2(_Self,S):- string_concat(";",_,S),!,writeln(S). -accept_line2(Self,S):- string_concat('(',RS,S),string_concat(M,')',RS),!, - atomic_list_concat([F|LL],' ',M),PL =..[F,Self|LL],assert(PL),!,flag(next_assert,X,X+1), - if_t((0 is X mod 10_000_000),(writeln(X=PL),statistics)). -accept_line2(Self,S):- fbug(accept_line2(Self,S)),!. - -load_metta_file_stream_fast(_Size,_P2,Filename,Self,S):- atomic_list_concat([_,_,_|_],'.',Filename), - \+ option_value(html,true), - atomic(S),is_stream(S),stream_property(S,input),!, - repeat, - read_line_to_string(S,I), - accept_line(Self,I), - I==end_of_file,!. - -load_metta_file_stream_fast(_Size,P2,Filename,Self,In):- - repeat, + once((repeat, (( current_read_mode(Mode), - call(P2, In,Expr), %write_src(read_metta=Expr),nl, - once((((do_metta(file(Filename),Mode,Self,Expr,_O)))->true; pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), - flush_output, - at_end_of_stream(In),!. + once(read_metta(In,Expr)), %write_src(read_metta=Expr),nl, + must_det_ll((((do_metta(file(Filename),Mode,Self,Expr,_O)))->true; + pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), + flush_output)), + at_end_of_stream(In)))))),!. + clear_spaces:- clear_space(_). clear_space(S):- @@ -464,7 +443,6 @@ nop(retractall(metta_type(S,_,_))), retractall(asserted_metta_atom(S,_)). -dcall(G):- call(G). lsm:- lsm(_). lsm(S):- @@ -488,8 +466,8 @@ -debug_only(G):- notrace(ignore(catch_warn(G))). -debug_only(_What,G):- ignore((fail,notrace(catch_warn(G)))). +debug_only(G):- mnotrace(ignore(catch_warn(G))). +debug_only(_What,G):- ignore((fail,mnotrace(catch_warn(G)))). 'True':- true. @@ -517,7 +495,7 @@ ). /* -is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). +is_syspred(H,Len,Pred):- mnotrace(is_syspred0(H,Len,Pred)). is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. @@ -581,7 +559,6 @@ (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. -%repl_read(Str, Expr):- ((clause(t_l:s_reader_info(Expr),_,Ref),erase(Ref))). repl_read("!", '!'):-!. repl_read("+", '+'):-!. repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. @@ -608,53 +585,42 @@ repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). repl_read(Expr) :- repeat, remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), - repl_read(Str, Expr), - % once(((atom(Expr1),atom_concat('@',_,Expr1), \+ atom_contains(Expr1,"="), repl_read(Expr2)) -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), + repl_read(Str, Expr1), + once(((atom(Expr1),atom_concat('@',_,Expr1), + \+ atom_contains(Expr1,"="), + repl_read(Expr2)) + -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), % this cutrs the repeat/0 ((peek_pending_codes(_,Peek),Peek==[])->!;true). -add_history_string(Str):- notrace(ignore(add_history01(Str))),!. +add_history_string(Str):- mnotrace(ignore(add_history01(Str))),!. -add_history_src(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). +add_history_src(Exec):- mnotrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). add_history_pl(Exec):- var(Exec), !. add_history_pl(eval(_,catch_red(PL),_)):- !,add_history_pl(PL). add_history_pl(show_failure(PL)):-!,add_history_pl(PL). add_history_pl(as_tf(PL,_OUT)):-!,add_history_pl(PL). -add_history_pl(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). - - -%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). -read_metta(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). -read_metta(I,O):- string(I),normalize_space(string(M),I),!,parse_sexpr_metta1(M,O),!. -read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). -read_metta(In,Expr):- read_metta1(In,Expr). +add_history_pl(Exec):- mnotrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). -read_metta1(In,Expr):- is_file_stream_and_size(In, Size) , Size>10240,!,read_sform1([],In,Expr). -read_metta1(In,Expr):- read_metta2(In,Expr). +read_metta1(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta1(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta1(In,Expr):- string(In),!,parse_sexpr_metta(In,Expr),!. -read_metta2(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). -read_metta2(In,Expr):- peek_char(In,Char), read_metta2(In,Char,Expr). -read_metta2(In,Char,Expr):- char_type(Char,space),get_char(In,Char),put(Char),!,read_metta2(In,Expr). -read_metta2(In,'!',Expr):- get_char(In,_), !, read_metta2(In,Read1),!,Expr=exec(Read1). -read_metta2(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),Expr='$COMMENT'(Str,0,0))). -% write_comment(Str),!,read_metta2(In,Expr))),!. -% read_metta2(In,_,Expr):- maybe_read_pl(In,Expr),!. -read_metta2(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). +read_metta1(In,Expr):- !, get_char(In,Char), !, must_det_ll((read_sform3(s,[],Char,In,Expr))). +read_metta1(In,Expr):- peek_char(In,Char), read_metta1(In,Char,Expr). -% Predicate to check if a stream is a file stream and get its size. -is_file_stream_and_size(Stream, Size) :- - % Check if the stream is associated with a file. - stream_property(Stream, file_name(FileName)), - % Check if the file is accessible and get its size. - exists_file(FileName), - size_file(FileName, Size). +read_metta1(In,Char,Expr):- char_type(Char,space),get_char(In,Char),put(Char),!,read_metta1(In,Expr). +read_metta1(In,'!',Expr):- get_char(In,_), !, read_metta(In,Read1),!,Expr=exec(Read1). +read_metta1(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),write_comment(Str),!,read_metta(In,Expr))),!. +read_metta1(In,_,Expr):- maybe_read_pl(In,Expr),!. +read_metta1(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). maybe_read_pl(In,Expr):- peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), - notrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, + mnotrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, read_term(In, Term, [])))). peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. @@ -669,11 +635,6 @@ ( F1\=='!' -> F=F1 ; (read_sform1([],S,F2), F = exec(F2))). - -read_sform2(S,F1):- !, read_metta2(S,F1). -read_sform2(S,F1):- read_sform1([],S,F1). - -read_sform1(_,_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). read_sform1( AltEnd,Str,F):- string(Str),open_string(Str,S),!,read_sform1( AltEnd,S,F). read_sform1(_AltEnd,S,F):- at_end_of_stream(S),!,F=end_of_file. read_sform1( AltEnd,S,M):- get_char(S,C),read_sform3(s, AltEnd,C,S,F), untyped_to_metta(F,M). @@ -730,7 +691,14 @@ in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. - +%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). +read_metta(_,O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). +read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). +read_metta(In,Expr):- + read_metta1(In,Read1), + (Read1=='!' + -> (read_metta1(In,Read2), Expr=exec(Read2), nop(add_history_src(Expr))) + ; Expr = Read1),!. parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). @@ -896,22 +864,17 @@ assert_preds(Self,Load,Preds). */ -use_metta_compiler:- notrace(option_value('compile','full')), !. +use_metta_compiler:- mnotrace(option_value('compile','full')), !. preview_compiler:- \+ option_value('compile',false), !. %preview_compiler:- use_metta_compiler,!. -op_decl('pragma!', [ 'Atom', 'Atom'], 'EmptyType'). -op_decl('match', [ 'Space', 'Atom', 'Atom'], '%Undefined%'). +op_decl(match, [ 'Space', 'Atom', 'Atom'], '%Undefined%'). op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). op_decl('get-atoms', [ 'Space' ], 'Atom'). -op_decl('get-state', [[ 'MonadicState', Type]],Type). -op_decl('change-state!', [[ 'MonadicState',Type],Type],'EmptyType'). -op_decl('new-state', [Type], ['MonadicState',Type ]). - op_decl('car-atom', [ 'Expression' ], 'Atom'). op_decl('cdr-atom', [ 'Expression' ], 'Expression'). @@ -940,11 +903,11 @@ op_decl(decons, [ 'Atom' ], 'Atom'). op_decl(empty, [], '%Undefined%'). op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). +op_decl(eval, [ 'Atom' ], 'Atom'). op_decl(function, [ 'Atom' ], 'Atom'). op_decl(id, [ 'Atom' ], 'Atom'). op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). */ -op_decl(eval, [ 'Atom' ], 'Atom'). op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). op_decl('%', [ 'Number', 'Number' ], 'Number'). @@ -973,7 +936,6 @@ :- dynamic(get_metta_atom/2). :- dynamic(asserted_metta_atom/2). -metta_atom_stdlib(_):-!,fail. metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). @@ -982,7 +944,7 @@ get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). -get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred_nr(F, Len),current_predicate(F/Len), length([A|List],Len),apply(F,[A|List]). +get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred(F, Len), length([A|List],Len),apply(F,[A|List]). get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). @@ -992,8 +954,6 @@ %asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) %metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. -metta_atom(KB,Atom):- get_metta_atom_from(KB,Atom). -metta_defn(KB,Head,Body):- metta_defn(_Eq,KB,Head,Body). metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). %typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). @@ -1049,9 +1009,7 @@ % check_silent_loading:- silent_loading,!,trace,break. check_silent_loading. silent_loading:- is_converting,!. -silent_loading:- option_value('html','True'), !,fail. -silent_loading:- option_value('trace-on-load','False'), !. - +silent_loading:- \+ option_value('trace-on-load',true), !. @@ -1061,14 +1019,68 @@ uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). +:- dynamic(all_data_to/1). +all_data_once:- all_data_to(_),!. +all_data_once:- open('whole_flybase.pl',write,Out,[alias(all_data),encoding(utf8),lock(write)]), + assert(all_data_to(Out)), + writeln(Out,':- encoding(utf8).'), + writeln(Out,':- style_check(-discontiguous).'), + flush_output(Out), + all_data_preds. +all_data_preds:- + all_data_to(Out), + with_output_to(Out, +((listing_c(table_n_type/3), + listing_c(load_state/2), + listing_c(is_loaded_from_file_count/2), + listing_c(fb_pred/2), + listing_c(fb_arg_type/1), + listing_c(fb_arg_table_n/3), + listing_c(fb_arg/1), + listing_c(done_reading/1)))),!. +all_data_done:- + all_data_preds, + ignore(retract(all_data_to(Out))), + close(Out). + +listing_c(F/A):- + format('~N~q.~n',[:-multifile(F/A)]), + format('~q.~n',[:-dynamic(F/A)]), + functor(P,F,A), + catch(forall(P,format('~q.~n',[P])),E, fbug(caused(F/A,E))). + + +:- dynamic(all_metta_to/1). +all_metta_once:- all_metta_to(_),!. +all_metta_once:- open('whole_flybase.metta',write,Out,[alias(all_metta),encoding(utf8),lock(write)]), + assert(all_metta_to(Out)), + all_metta_preds. +all_metta_preds:-!. +all_metta_done:- + all_metta_preds, + retract(all_metta_to(Out)), + close(Out). + +real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert(OBO):- + ignore(real_assert1(OBO)), + real_assert2(OBO). + +%real_assert(OBO):- is_converting,!,print_src(OBO). +real_assert1(OBO):- all_metta_to(Out),!,with_output_to(Out,print_src(OBO)). +real_assert2(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). +real_assert2(OBO):- call(OBO),!. +real_assert2(OBO):- assert(OBO). + +print_src(OBO):- format('~N'), uncompound(OBO,Src),!, with_indents(false,write_src(Src)). + assert_to_metta(_):- reached_file_max,!. assert_to_metta(OBO):- - must_det_ll((OBO=..[Fn|DataLL], - maplist(better_arg,DataLL,DataL), + OBO=..[Fn|DataL], into_datum(Fn, DataL, Data), functor(Data,Fn,A),decl_fb_pred(Fn,A), real_assert(Data),!, - incr_file_count(_))). + incr_file_count(_). assert_to_metta(OBO):- ignore(( A>=2,A<700, @@ -1126,12 +1138,12 @@ (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. -write_exec(Exec):- notrace(write_exec0(Exec)). +write_exec(Exec):- mnotrace(write_exec0(Exec)). %write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). write_exec0(Exec):- wots(S,write_src(exec(Exec))), nb_setval(exec_src,Exec), - ignore((notrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). + ignore((mnotrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). @@ -1241,10 +1253,10 @@ convert_tax(How,_Self,Tax,Expr,How):- %parse_sexpr_metta(Tax,Expr). normalize_space(string(NewTax),Tax), - parse_sexpr_metta1(NewTax,Expr). + read_metta(NewTax,Expr). -:- if( \+ current_predicate(notrace/1) ). - notrace(G):- once(G). +:- if( \+ current_predicate(mnotrace/1) ). + mnotrace(G):- once(G). :- endif. metta_interp_mode('+',load). @@ -1289,7 +1301,7 @@ do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). do_metta(file(Filename),exec,Self,TermV,Out):- - notrace(( + mnotrace(( inc_exec_num(Filename), must_det_ll(( get_exec_num(Filename,Nth), @@ -1307,7 +1319,7 @@ do_metta_exec(From,Self,TermV,FOut):- Output = X, - notrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)),!, + mnotrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)),!, user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). @@ -1328,7 +1340,7 @@ subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), copy_term(NamedVarsList,Was), term_variables(Term,Vars), - notrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), + mnotrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), %nl,writeq(Term),nl, ((\+ \+ ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), @@ -1343,7 +1355,7 @@ into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, option_else('stack-max',StackMax,100), CALL = eval_H(StackMax,Self,Term,X), - notrace(( must_det_ll(( + mnotrace(( must_det_ll(( if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), subst_vars(TermV,Term,NamedVarsList), copy_term(NamedVarsList,Was) @@ -1356,7 +1368,7 @@ )))),!. eval_H(StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). -eval_H(Term,X):- eval_args(Term,X). + /* eval_H(StackMax,Self,Term,X). @@ -1396,7 +1408,7 @@ catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). -catch_err(G,E,C):- catch(G,E,(notrace(if_t(atom(E),throw(E))),C)). +catch_err(G,E,C):- catch(G,E,(mnotrace(if_t(atom(E),throw(E))),C)). %repl:- option_value('repl',prolog),!,prolog. %:- ensure_loaded(metta_toplevel). @@ -1412,7 +1424,7 @@ with_option('doing_repl',true, with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). repl2:- - %notrace((current_input(In),nop(catch(load_history,_,true)))), + %mnotrace((current_input(In),nop(catch(load_history,_,true)))), % ignore(install_readline(In)), repeat, set_prolog_flag(gc,false), @@ -1420,35 +1432,33 @@ ignore(catch(once(repl3),restart_reading,true)), set_prolog_flag(gc,true),fail. repl3:- - notrace(( flag(eval_num,_,0), + mnotrace(( flag(eval_num,_,0), current_self(Self), current_read_mode(Mode), %ignore(shell('stty sane ; stty echo')), %current_input(In), format(atom(P),'metta ~w ~w> ',[Self, Mode]))), setup_call_cleanup( - notrace(prompt(Was,P)), - notrace((ttyflush,repl_read(Expr),ttyflush)), - notrace(prompt(_,Was))), - if_trace(repl,fbug(repl_read(Expr))), - %fbug(repl_read(Expr)), - notrace(if_t(Expr==end_of_file,throw(end_of_input))), + mnotrace(prompt(Was,P)), + mnotrace((ttyflush,repl_read(Expr),ttyflush)), + mnotrace(prompt(_,Was))), + fbug(repl_read(Expr)), + mnotrace(if_t(Expr==end_of_file,throw(end_of_input))), %ignore(shell('stty sane ; stty echo')), - notrace(ignore(check_has_directive(Expr))), + mnotrace(ignore(check_has_directive(Expr))), once(do_metta(repl_true,Mode,Self,Expr,_)). check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). -check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,notrace(throw(restart_reading)). +check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,mnotrace(throw(restart_reading)). check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(read_mode,ModeChar). -check_has_directive('@'):- show_options_values,nl,!,notrace(throw(restart_reading)). -check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),option_value(NEV,Foo),print(NEV=Foo),nl,!,notrace(throw(restart_reading)). +check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),check_has_directive(NEV,true). check_has_directive(_). set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). set_directive(N,V):- N==mode,!,set_directive(read_mode,V). -set_directive(N,V):- show_call(set_option_value(N,V)),!,notrace(throw(restart_reading)). +set_directive(N,V):- show_call(set_option_value(N,V)),!,mnotrace(throw(restart_reading)). read_pending_white_codes(In):- read_pending_codes(In,[10],[]),!. @@ -1514,7 +1524,7 @@ -is_interactive(From):- notrace(is_interactive0(From)). +is_interactive(From):- mnotrace(is_interactive0(From)). is_interactive0(From):- From==false,!,fail. is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). is_interactive0(From):- From = repl_true,!. @@ -1559,15 +1569,13 @@ do_metta(prolog,exec,Self,Form,Out). name_vars(X='$VAR'(X)). -interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- - catch(interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut),'$aborted',fbug(aborted(From,TermV))). -interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- - notrace(( +interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- + mnotrace(( Result = res(FOut), inside_assert(Term,BaseEval), option_else(answer,Leap,each), - Control = contrl(inf,Leap), + Control = contrl(Leap), Skipping = _, % Initialize Control as a compound term with 'each' as its argument. %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), @@ -1606,38 +1614,33 @@ true))))), (forall_interactive( - From, WasInteractive,Complete, %may_rtrace - (timed_call(GG,Seconds)), + From, WasInteractive,Complete,may_rtrace(timed_call(GG,Seconds)), ((Complete==true->!;true), %repeat, set_option_value(interactive,WasInteractive), - Control = contrl(Max,DoLeap), nb_setarg(1,Result,Output), read_pending_codes(user_input,_,[]), flag(result_num,R,R+1), flag(result_num,ResNum,ResNum), - if_t(ResNum=(format('~NDeterministic: ', []), !); %or Nondet + (((ResNum==1,Complete==true)->(format('~NDeterministic: ', []), !); %or Nondet ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); format('~NNDet Result(~w): ',[ResNum])))), color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), - give_time('Execution',Seconds), color_g_mesg(green, - ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))))), - ( - (Complete\==true, WasInteractive, DoLeap\==leap, ResNum + ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))), + ( give_time('Execution',Seconds), + (Complete\==true, WasInteractive, Control \== contrl(leap))-> (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, (C=='b' -> (once(repl),fail) ; (C=='m' -> make ; (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; (C=='T' -> (set_debug(eval,true)); (C==';' -> true ; - (C==esc('[A',[27,91,65]) -> nb_setarg(2, Control, leap) ; - (C=='L' -> nb_setarg(1, Control, ResNum) ; - (C=='l' -> nb_setarg(2, Control, leap) ; + (C==esc('[A',[27,91,65]) -> nb_setarg(1, Control, leap) ; + (C=='l' -> nb_setarg(1, Control, leap) ; (((C=='\n');(C=='\r')) -> (!,fail); - (!,fail)))))))))))); - (Complete\==true, \+ WasInteractive, Control = contrl(Max,leap)) -> true ; + (!,fail))))))))))); + (Complete\==true, \+ WasInteractive, Control == contrl(leap)) -> true ; (((Complete==true ->! ; true))))) *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,true);true))), @@ -1665,7 +1668,6 @@ Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). print_var(Name=Var) :- print_var(Name,Var). -print_var(Name,_Var) :- atom_concat('Num',Rest,Name),atom_number(Rest,_),!. print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. % Entry point for the user to call with tracing enabled @@ -1731,7 +1733,7 @@ % Command implementations handle_command(make, Variables, Goal, Tracing) :- writeln('Recompiling...'), - % Insert the logic to recompile the code. + % Insert the logic to re4 the code. % This might involve calling `make/0` or similar. make, % This is assuming your Prolog environment has a `make` predicate. fail. % interact(Variables, Goal, Tracing). @@ -1739,9 +1741,9 @@ handle_command(compile, Variables, Goal, Tracing) :- writeln('Compiling new executable...'), % Insert the logic to compile a new executable. - % This will depend on how you compile Prolog programs in your environment. + % This will depend on how you 4 Prolog programs in your environment. % For example, you might use `qsave_program/2` to create an executable. - % Pseudocode: compile_executable(ExecutableName) + % Pseudocode: 4_executable(ExecutableName) fail. % interact(Variables, Goal, Tracing). handle_command(alternatives, Variables, Goal, Tracing) :- writeln('Showing alternatives...'), @@ -1830,7 +1832,6 @@ rtrace_on_existence_error(G):- !, catch_err(G,E, (fbug(E=G), \+ tracing, trace, rtrace(G))). %rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). -prolog_only(Goal):- !,Goal. prolog_only(Goal):- if_trace(prolog,Goal). write_compiled_exec(Exec,Goal):- @@ -2075,8 +2076,9 @@ gensym(Stem,Name), \+ exists_file(Name), Name\==E,!. -next_save_name(SavMeTTaLog):- option_value(exeout,SavMeTTaLog),atomic(SavMeTTaLog),atom_length(SavMeTTaLog,Len),Len>1,!. -next_save_name('Sav.MeTTaLog'). +next_save_name(SavMeTTaLog):- option_value(exeout,SavMeTTaLog), + atomic(SavMeTTaLog),atom_length(SavMeTTaLog,Len),Len>1,!. +next_save_name('Sav.godlike.MeTTaLog'). qcompile_mettalog:- ensure_mettalog_system, option_value(exeout,Named), diff --git a/metta_vspace/pyswip/metta_python.pl b/metta_vspace/pyswip/metta_python.pl index 402ba431..65a830f1 100755 --- a/metta_vspace/pyswip/metta_python.pl +++ b/metta_vspace/pyswip/metta_python.pl @@ -117,7 +117,7 @@ py_to_pl(VL,I,O):- ignore(VL=[vars]), py_to_pl(VL,[],[],_,I,O),!. is_var_or_nil(I):- var(I),!. is_var_or_nil([]). -%py_to_pl(VL,Par,_Cir,_,L,_):- fbug(py_to_pl(VL,Par,L)),fail. +%py_to_pl(VL,Par,_Cir,_,L,_):- wdmsg(py_to_pl(VL,Par,L)),fail. py_to_pl(_VL,_Par,Cir,Cir,L,E):- var(L),!,E=L. py_to_pl(_VL,_Par,Cir,Cir,L,E):- L ==[],!,E=L. py_to_pl(_VL,_Par,Cir,Cir,L,E):- member(N-NE,Cir), N==L, !, (E=L;NE=E), !. @@ -162,9 +162,9 @@ pyo_to_pl(VL,_Par,Cir,Cir,Cl,O,E):- Cl=='VariableAtom', !, py_call(O:get_name(),R), real_VL_var(R,VL,E),!. pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl1(Par,Cl,M),py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). -pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl(Par,Cl,M), % fbug(class_to_pl(Par,Cl,M)), +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl(Par,Cl,M), % wdmsg(class_to_pl(Par,Cl,M)), py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). -pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- catch(py_obj_dir(O,L),_,fail),fbug(py_obj_dir(O,L)),py_decomp(M),meets_dir(L,M),fbug(py_decomp(M)), +pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- catch(py_obj_dir(O,L),_,fail),wdmsg(py_obj_dir(O,L)),py_decomp(M),meets_dir(L,M),wdmsg(py_decomp(M)), py_member_values(O,M,R), member(N-_,Cir), R\==N, !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E),!. pl_to_py(Var,Py):- pl_to_py(_VL,Var,Py). @@ -258,15 +258,15 @@ with_safe_argv(( %listing(ensure_rust_metta/1), ensure_metta_learner, - fbug('extend-py!'(Module)), + wdmsg('extend-py!'(Module)), ensure_rust_metta(MeTTa), replace_in_string(["/"="."],Module,ToPython), py_call(MeTTa:load_py_module(ToPython),Result), - fbug(result(MeTTa->Result)))),!. + wdmsg(result(MeTTa->Result)))),!. ensure_metta_learner:- with_safe_argv(ensure_metta_learner(Learner)), - fbug(ensure_metta_learner(Learner)). + wdmsg(ensure_metta_learner(Learner)). % Example usage example_usage :- diff --git a/metta_vspace/pyswip/metta_reader.pl b/metta_vspace/pyswip/metta_reader.pl index 58c76bdd..f3d0d14b 100755 --- a/metta_vspace/pyswip/metta_reader.pl +++ b/metta_vspace/pyswip/metta_reader.pl @@ -80,7 +80,7 @@ def_compile_all(I,O):- current_predicate(compile_all/2),!,call(call,compile_all,I,O). -def_compile_all(I,O):- fbug(undefined_compile_all(I)),I=O. +def_compile_all(I,O):- wdmsg(undefined_compile_all(I)),I=O. zalwayzz(G):- call(G)*->true;throw(fail_zalwayzz(G)). @@ -480,7 +480,7 @@ %sexpr(L) --> sblank,!,sexpr(L),!. %sexpr(_) --> `)`,!,{trace,break,throw_reader_error(": an object cannot start with #\\)")}. -sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(fbug(sexpr(X))))),!. +sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(wdmsg(sexpr(X))))),!. %sexpr(X,H,T):- zalwayzz(sexpr0(X,H,T)),!,swhite. is_common_lisp:- fail. @@ -561,7 +561,6 @@ % c:/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/guile/module/ice-9/and-let-star.scm priority_symbol((`|-`)). -/* priority_symbol((`#=`)). priority_symbol((`#+`)). priority_symbol((`#-`)). @@ -579,18 +578,19 @@ priority_symbol((`-1-`)). priority_symbol((`1+`)). priority_symbol((`1-`)). -*/ sym_or_num('$COMPLEX'(L)) --> `#C(`,!, swhite, sexpr_list(L), swhite. %sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. %sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. -%sym_or_num((E)) --> lnumber(E),swhite,!. +sym_or_num((E)) --> lnumber(E),swhite,!. sym_or_num(E) --> rsymbol_maybe(``,E),!. %sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. -%sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. + + +sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. % sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. @@ -900,8 +900,8 @@ char_code_int(Char,Code):- notrace_catch_fail(char_code(Char,Code)),!. char_code_int(Char,Code):- notrace_catch_fail(atom_codes(Char,[Code])),!. char_code_int(Char,Code):- atom(Char),name_to_charcode(Char,Code),!. -char_code_int(Char,Code):- var(Char),!,fbug(char_code_int(Char,Code)), only_debug(break). -char_code_int(Char,Code):- fbug(char_code_int(Char,Code)),only_debug(break). +char_code_int(Char,Code):- var(Char),!,wdmsg(char_code_int(Char,Code)), only_debug(break). +char_code_int(Char,Code):- wdmsg(char_code_int(Char,Code)),only_debug(break). char_code_to_char(N,S):- atom(N),atom_codes(N,[_]),!,S=N. char_code_to_char(N,S):- atom(N),!,S=N. diff --git a/metta_vspace/pyswip/metta_server.pl b/metta_vspace/pyswip/metta_server.pl new file mode 100755 index 00000000..94bee387 --- /dev/null +++ b/metta_vspace/pyswip/metta_server.pl @@ -0,0 +1,95 @@ + +:- use_module(library(socket)). +:- use_module(library(thread)). + +call_wdet(Goal,WasDet):- call(Goal),deterministic(WasDet). +% Helper to parse Server and Port +parse_server_port(ServerPort,DefaultPort, Server, Port) :- + ( ServerPort = Server:Port -> true + ; integer(ServerPort) -> Server = localhost, Port = ServerPort + ; Server = ServerPort, Port = DefaultPort % Default port if none specified + ). + +start_vspace_server(Port) :- + thread_create(run_vspace_server(Port),_,[detached(true),alias(vspace_server)]). + +run_vspace_server(Port) :- + tcp_socket(Socket), tcp_bind(Socket, Port), tcp_listen(Socket, 5), tcp_open_socket(Socket, ListenFd), + fbug(run_vspace_server(Port)), + accept_vspace_connections(ListenFd). + +accept_vspace_connections(ListenFd) :- + tcp_accept(ListenFd, ClientFd, ClientAddr), + format(atom(ThreadAlias), 'client_~w', [ClientAddr]), + thread_create(setup_call_cleanup( + tcp_open_socket(ClientFd, Stream), + ignore(handle_vspace_client(Stream)), + catch(close(Stream),_,true)), _, [detached(true), alias(ThreadAlias)] ), + accept_vspace_connections(ListenFd). + +handle_vspace_client(Stream) :- + read_term(Stream, Goal,[]), + ( Goal \= end_of_file + -> ( catch(call_wdet(Goal,WasDet), Error, true) + *-> ( var(Error) -> send_term(Stream, success(Goal,WasDet)) ; send_term(Stream,error(Error))) + ;send_term(Stream, 'failed'))), + handle_vspace_client(Stream). + +% Start the server automatically on a default port or a specified port +:- dynamic vspace_port/1. +start_vspace_server:- ( vspace_port(Port) -> start_vspace_server(Port); start_vspace_server(3023) ). + +:- initialization(start_vspace_server). + +% Connects to the server and sends the goal +remote_call(ServerPort, Goal) :- + setup_call_cleanup( + (connect_to_server(ServerPort, Stream),send_term(Stream, Goal)), + read_response(Stream,Goal), + close(Stream)). + +% Helper to establish connection +connect_to_server(HostPort, Stream) :- + parse_server_port(HostPort, 3023, Host, Port), + tcp_socket(Socket), + tcp_connect(Socket, Host:Port), + tcp_open_socket(Socket, Stream). + +% Helper to send goal and receive response +send_term(Stream, Goal) :- write_canonical(Stream, Goal),writeln(Stream, '.'), flush_output(Stream). + + +% Read and process the server's response +read_response(Stream,Goal) :- + flush_output(Stream), + repeat, read_term(Stream,Response,[]), + (Response == failed -> (!,fail) ; + (Response = error(Throw) -> throw(Throw) ; + ((Response = success(Goal,WasDet)), + (WasDet==true-> (!, true) ; true)))). + +% Example usage +% ?- remote_call('localhost', member(X, [1,2,3])). + +:- dynamic predicate_server/2. % Maps predicate to server + +% Registers a predicate to a server +register_predicate_server(Predicate, Server) :- assertz(predicate_server(Predicate, Server)). + +% Meta-interpreter with cut handling +execute_goal(Goal, IsCut) :- + predicate_server(Goal, Server), !, + remote_call(Server, Goal), % If the goal is registered for a server, call remotely + IsCut = _. +execute_goal(!, IsCut) :- !, IsCut = cut. % Handle cuts +execute_goal(Goal, IsCut) :- predicate_property(Goal,numberr_of_clauses(_)),!, + clause(Goal, Body), % Retrieve the clause body for the goal + execute_goal(Body, IsCut), + (nonvar(IsCut)->!;true). +execute_goal((SubGoal1, SubGoal2), IsCut) :- !, execute_goal(SubGoal1, IsCut), execute_goal(SubGoal2, IsCut). +execute_goal((SubGoal1; SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut); execute_goal(SubGoal2, IsCut)). +execute_goal((SubGoal1 -> SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut) -> execute_goal(SubGoal2, IsCut)). +execute_goal(findall(X, Y, Z), _) :- !, findall(X, execute_goal(Y, _), Z). +execute_goal(forall(X, Y), _) :- !, forall(execute_goal(X, _), execute_goal(Y, _)). +execute_goal(SubGoal, _IsCut) :- call_wdet(SubGoal, _WasDet). + diff --git a/metta_vspace/pyswip/metta_space.pl b/metta_vspace/pyswip/metta_space.pl index 954c28dc..c63a1c27 100755 --- a/metta_vspace/pyswip/metta_space.pl +++ b/metta_vspace/pyswip/metta_space.pl @@ -136,8 +136,7 @@ space_query_vars(SpaceNameOrInstance, Query, Vars) :- is_as_nb_space(SpaceNameOrInstance),!, fetch_or_create_space(SpaceNameOrInstance, Space), call_metta(Space,Query,Vars). -*/ -:- dynamic(was_asserted_space/1). +*/ :- dynamic(was_asserted_space/1). was_asserted_space('&flybase'). was_asserted_space('&self'). @@ -307,26 +306,26 @@ %:- dynamic(for_metta/2). %for_metta(_,T):- fb_pred(F,A),functor(T,F,A),call(T). -metta_assertdb_ls(KB):-listing(asserted_metta_atom(KB,_)). +metta_assertdb_ls(KB):-listing(metta_atom(KB,_)). metta_assertdb_add(KB,Atom):- subst_vars(Atom,New), - decl_m_fb_pred(user,asserted_metta_atom,2), - MP = asserted_metta_atom(KB,New), + decl_m_fb_pred(user,get_metta_atom,2), + MP = metta_atom(KB,New), assert_new(MP). metta_assertdb_rem(KB,Old):- metta_assertdb_del(KB,Old). -metta_assertdb_del(KB,Atom):- subst_vars(Atom,Old), decl_m_fb_pred(user,asserted_metta_atom,2), MP = asserted_metta_atom(KB,Old), +metta_assertdb_del(KB,Atom):- subst_vars(Atom,Old), decl_m_fb_pred(user,get_metta_atom,2), MP = metta_atom(KB,Old), copy_term(MP,Copy), clause(MP,true,Ref), MP=@= Copy, !, erase(Ref). % ,metta_assertdb('DEL',Old). metta_assertdb_replace(KB,Old,New):- metta_assertdb_del(KB,Old), metta_assertdb_add(KB,New). metta_assertdb_count(KB,Count):- must_det_ll(( - decl_m_fb_pred(user,asserted_metta_atom,2), full_atom_count(SL1), - MP = asserted_metta_atom(KB,_), + decl_m_fb_pred(user,get_metta_atom,2), full_symbol_count(SL1), + MP = metta_atom(KB,_), predicate_property(MP,number_of_clauses(SL2)), predicate_property(MP,number_of_rules(SL3)), %metta_assertdb_ls(KB), Count is SL1 + SL2 - SL3)),!. metta_assertdb_count(_KB,0):-!. %metta_assertdb_count(KB,Count):- writeln(metta_assertdb_count_in(KB,Count)), findall(Atom,for_metta(KB,Atom),AtomsL),length(AtomsL,Count),writeln(metta_assertdb_count_out(KB,Count)). -metta_assertdb_iter(KB,Atoms):- decl_m_fb_pred(user,asserted_metta_atom,2), asserted_metta_atom(KB,Atoms). +metta_assertdb_iter(KB,Atoms):- decl_m_fb_pred(user,get_metta_atom,2), metta_atom(KB,Atoms). @@ -344,19 +343,19 @@ % Query from hyperon.base.GroundingSpace space_query_vars(KB,Query,Vars):- is_asserted_space(KB),!, - decl_m_fb_pred(user,asserted_metta_atom,2), + decl_m_fb_pred(user,get_metta_atom,2), call_metta(KB,Query,Vars), debug_metta('RES',space_query_vars(KB,Query,Vars)). -metta_assertdb_get_atoms(KB,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Atom,asserted_metta_atom(KB,Atom),AtomsL). +metta_assertdb_get_atoms(KB,AtomsL):- decl_m_fb_pred(user,get_metta_atom,2), findall(Atom,metta_atom(KB,Atom),AtomsL). /* -%metta_assertdb_iter_bind(KB,Query,Template,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Template,asserted_metta_atom(KB,Query),AtomsL). +%metta_assertdb_iter_bind(KB,Query,Template,AtomsL):- decl_m_fb_pred(user,get_metta_atom,2), findall(Template,metta_atom(KB,Query),AtomsL). metta_assertdb_iter_bind(KB,Query,Vars):- ignore(term_variables(Query,Vars)), print(metta_assertdb(['match',KB,Query,Vars])),nl, - decl_m_fb_pred(user,asserted_metta_atom,2), (asserted_metta_atom(KB,Query)*->true;call_metta_assertdb(KB,Query,Vars)), + decl_m_fb_pred(user,get_metta_atom,2), (metta_atom(KB,Query)*->true;call_metta_assertdb(KB,Query,Vars)), metta_assertdb('RES',metta_assertdb_iter_bind(KB,Query,Vars)). %metta_assertdb_iter_bind(KB,Atom,Template):- metta_assertdb_stats, findall(Template,metta_assertdb_iter(KB,Atom),VarList). @@ -405,8 +404,8 @@ 'get-metta-src'(Pred,[Len|SrcL]):- findall(Src,'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). 'get-metta-src1'(Pred,Src):- current_self(Space), - metta_atom(Space,[F,A|List]), - once((sub_var(Pred,A)->Src = [F,A|List];sub_var(Pred,F)->Src = [F,A|List])). + metta_atom(Space,F,A,List), + once((sub_var(Pred,A)->Src = [F,A,List];sub_var(Pred,F)->Src = [F,A|List])). % is a quine 'AtomDef'(X,['AtomDef',X]). @@ -470,9 +469,7 @@ pp_sex(V) :- w_proper_indent(2,w_in_p(pp_sexi(V))). -:- nb_setval(src_indents,'True'). -no_src_indents:- nb_setval(src_indents,'False'). - %option_else(src_indents,TF,true),!,TF=='False'. +no_src_indents:- option_else(src_indents,TF,true),!,TF=='False'. pp_sexi_l([H,S]):-H=='[...]', write('['),print_items_list(S),write(' ]'). pp_sexi_l([H,S]):-H=='{...}', write('{'),print_items_list(S),write(' }'). @@ -513,7 +510,7 @@ always_dash_functor(A,A). dash_functor(A,C):- \+ symbol(A),!,C=A. -dash_functor(A,C):- fail, p2m(A,B),A\==B,!,always_dash_functor(B,C). +dash_functor(A,C):- p2m(A,B),A\==B,!,always_dash_functor(B,C). dash_functor(Functor,DFunctor):- symbol(Functor), atomic_list_concat(L,'-',Functor), L\=[_],maplist(always_dash_functor,L,LL), atomic_list_concat(LL,'-',DFunctor). @@ -565,10 +562,8 @@ :- dynamic(fb_pred/2). -%full_atom_count(SL):- flag(total_loaded_atoms,SL,SL),SL>1,!. -full_atom_count(SL):- findall(NC,(fb_pred_nr(F,A),metta_stats(F,A,NC)),Each), sumlist(Each,SL). - -fb_pred_nr(F,A):- dcall0000000000(no_repeats((F=A), fb_pred(F,A))). +full_symbol_count(SL):- flag(total_loaded_atoms,SL,SL),SL>1,!. +full_symbol_count(SL):- findall(NC,(fb_pred(F,A),metta_stats(F,A,NC)),Each), sumlist(Each,SL). heartbeat :- % Get the current time and the last printed time @@ -595,7 +590,7 @@ metta_stats:- gc_now, writeln('\n\n\n\n\n\n;~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), writeln(';~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), - full_atom_count(SL), + full_symbol_count(SL), format("~N~n; Total\t\tAtoms (Atomspace size): ~`.t ~D~108|~n",[SL]), get_time(CurrentTime), nb_setval(last_printed_time, CurrentTime), post_statistic(memory,Mem), @@ -623,11 +618,9 @@ pl_stats('Total Memory Used',PM), pl_stats('Runtime (days:hh:mm:ss)',Formatted), nl,nl,!. - -metta_stats(F):- for_all(fb_pred_nr(F,A),metta_stats(F,A)). - -metta_stats(F,A):- forall(metta_stats(F,A,NC), pl_stats(F/A,NC)). -metta_stats(F,A,NC):- functor(P,F,A),(predicate_property(P,number_of_clauses(NC))->true;NC=0). +metta_stats(F):- for_all(fb_pred(F,A),metta_stats(F,A)). +metta_stats(F,A):- metta_stats(F,A,NC), pl_stats(F/A,NC). +metta_stats(F,A,NC):- functor(P,F,A),predicate_property(P,number_of_clauses(NC)). pl_stats(Stat):- statistics(Stat,Value),pl_stats(Stat,Value). pl_stats(Stat,[Value|_]):- nonvar(Value),!, pl_stats(Stat,Value). pl_stats(Stat,Value):- format("~N;\t\t~@: ~`.t ~@~100|",[format_value(Stat),format_value(Value)]),!. diff --git a/metta_vspace/pyswip/metta_subst.pl b/metta_vspace/pyswip/metta_subst.pl index 23d76490..0cb31401 100755 --- a/metta_vspace/pyswip/metta_subst.pl +++ b/metta_vspace/pyswip/metta_subst.pl @@ -11,22 +11,25 @@ self_subst(X):- atom(X),!, \+ nb_current(X,_),!. self_subst('True'). self_subst('False'). self_subst('F'). -:- style_check(-singleton). :- nb_setval(self_space, '&self'). substs_to(XX,Y):- Y==XX,!. substs_to(XX,Y):- Y=='True',!, is_True(XX),!. %current_self(Space):- nb_current(self_space,Space). +/* subst_args(Eq,RetType,A,AA):- current_self(Space), subst_args(Eq,RetType,11,Space,A,AA). %subst_args(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(subst_args(Eq,RetType,X)),fail. +*/ subst_args(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, call(Eq,'=',RetType,Depth,Self,X,Y). + :- style_check(-singleton). + %subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. @@ -37,14 +40,14 @@ subst_args(Eq,RetType,Depth,Self,[F|X],Y):- % (F=='superpose' ; ( option_value(no_repeats,false))), mnotrace((D1 is Depth-1)),!, - subst_args0(D1,Self,[F|X],Y). + subst_args0(Eq,RetType,D1,Self,[F|X],Y). -subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args0(Depth,Self,X,Y). +subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args0(Eq,RetType,Depth,Self,X,Y). /* subst_args(Eq,RetType,Depth,Self,X,Y):- mnotrace((no_repeats_var(YY), D1 is Depth-1)), - subst_args0(D1,Self,X,Y), + subst_args0(Eq,RetType,D1,Self,X,Y), mnotrace(( \+ (Y\=YY))). */ @@ -58,7 +61,7 @@ \+ \+ mnotrace(ignore((( format('~N'), setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). -indentq(Depth,Term):- +indentq(DR,EX,Term):- \+ \+ mnotrace(ignore((( format('~N'), setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), @@ -76,11 +79,11 @@ set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). -if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,fbug(E-->if_trace((Flag;true),Goal))))). -if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,fbug(E-->if_trace(Flag,Goal))))). +if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,wdmsg(E-->if_trace((Flag;true),Goal))))). +if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,wdmsg(E-->if_trace(Flag,Goal))))). -%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,fbug(SS=G)) ; fail. +%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,wdmsg(SS=G)) ; fail. maybe_efbug(_,G):- call(G). %efbug(P1,G):- call(P1,G). efbug(_,G):- call(G). @@ -102,18 +105,49 @@ */ -subst_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). -subst_args0(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. -subst_args0(Depth,Self,X,Y):- +subst_args0(Eq,RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +subst_args0(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args0(Eq,RetType,Depth,Self,X,Y):- Depth2 is Depth-1, - subst_args11(Depth,Self,X,M), - (M\=@=X ->subst_args0(Depth2,Self,M,Y);Y=X). + subst_args11(Eq,RetType,Depth,Self,X,M), + (M\=@=X ->subst_args0(Eq,RetType,Depth2,Self,M,Y);Y=X). + + + +subst_args11(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((subst_args)),!, + D1 is Depth-1, + subst_args1(Eq,RetType,D1,Self,X,Y). +subst_args11(Eq,RetType,Eq,RetType,Depth,Self,X,Y):- + notrace(( + + flag(subst_args_num,EX,EX+1), + D1 is Depth-1, + DR is 99-D1, + PrintRet = _, + option_else('trace-length',Max,100), + if_t((EX>Max), (set_debug(subst_args,false),MaxP1 is Max+1, set_debug(overflow,false), + format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), + nop(notrace(no_repeats_var(YY))), + if_t(DR<10,if_trace((subst_args),(PrintRet=1, indentq(DR,EX, '-->',subst(X))))), + Ret=retval(fail))), + + call_cleanup(( + (subst_args1(Eq,RetType,D1,Self,X,Y)), + notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), + (PrintRet==1 -> indentq(DR,EX,'<--',Ret) ; + mnotrace(ignore(((Y\=@=X, + if_t(DR<10,if_trace((subst_args),indentq(DR,EX,'<--',s(Ret)))))))))), -subst_args11(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. -subst_args11(Depth,Self,X,Y):- \+ debugging(metta(eval)),!, subst_args1(Eq,RetType,Depth,Self,X,Y). -subst_args11(Depth,Self,X,Y):- + (Ret\=@=retval(fail)->true;(rtrace(subst_args_00(Eq,RetType,D1,Self,X,Y)),fail)). + +/* + +subst_args11(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. +subst_args11(Eq,RetType,Depth,Self,X,Y):- \+ debugging(metta(eval)),!, subst_args1(Eq,RetType,Depth,Self,X,Y). +subst_args11(Eq,RetType,Depth,Self,X,Y):- notrace(( @@ -126,15 +160,15 @@ format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), nop(notrace(no_repeats_var(YY))), - if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,subst_args(Self,X,'$VAR'('RET')),depth(DR)))))), + if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(DR,EX,'-->'(subst_args(Self,X,'$VAR'('RET'))))))), Ret=retval(fail))), call_cleanup(( subst_args1(Eq,RetType,D1,Self,X,Y), mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), - mnotrace(ignore(((Y\=@=X,if_trace(metta(eval),indentq(Depth,'<--'(EX,Ret)))))))), - (Ret\=@=retval(fail)->true;(rtrace(subst_args0(D1,Self,X,Y)),fail)). - + mnotrace(ignore(((Y\=@=X,if_trace(metta(eval),indentq(DR,EX,'<--'(Ret)))))))), + (Ret\=@=retval(fail)->true;(rtrace(subst_args0(Eq,RetType,D1,Self,X,Y)),fail)). +*/ :- discontiguous subst_args1/6. :- discontiguous subst_args2/6. @@ -280,7 +314,7 @@ is_space_op('atom-count'). is_space_op('atom-replace'). -subst_args_as(Depth, Self, [OP|ARGS], Template):- !, eval('=',_,Depth, Self, [OP|ARGS], Template). +subst_args_as(Depth, Self, [OP|ARGS], Template):- !, eval_20('=',_,Depth, Self, [OP|ARGS], Template). subst_args_as(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Eq,Depth,Space,Goal). subst_args_as(Depth,Self,['match',Other,Goal,Template,Else],Template):- @@ -293,7 +327,7 @@ as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). subst_args1(Eq,RetType,Depth,Self,X,Res):- - X= [CaseSym|_],CaseSym == 'case', !, eval('=',_,Depth, Self, X,Res). + X= [CaseSym|_],CaseSym == 'case', !, eval_20('=',_,Depth, Self, X,Res). % Macro: case subst_args1_hide(Depth,Self,X,Res):- @@ -738,7 +772,7 @@ -%catch_warn(G):- notrace(catch_err(G,E,(fbug(catch_warn(G)-->E),fail))). +%catch_warn(G):- notrace(catch_err(G,E,(wdmsg(catch_warn(G)-->E),fail))). %catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). %as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). @@ -922,9 +956,9 @@ subst_args40(Eq,Depth,Self,FX,FY):- subst_args5(Depth,Self,FX,FY). subst_args5(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. -subst_args5(Depth,Self,[AE|More],TF):- fail, is_system_pred(AE), length(More,Len), +subst_args5(Depth,Self,[AE|More],TF):- is_system_pred(AE), length(More,Len), (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;subst_args6(Depth,Self,[AE|More],TF). -subst_args6(_Dpth,_Slf,[AE|More],TF):- fail, is_system_pred(AE),length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). +subst_args6(_Dpth,_Slf,[AE|More],TF):- is_system_pred(AE),length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). %subst_args40(Eq,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,subst_args(Eq,RetType,Depth,Self,[F2|X2],Y2),subst_args(Eq,RetType,Depth,Self,X1,Y1). diff --git a/metta_vspace/pyswip/metta_test_nars_1.pl b/metta_vspace/pyswip/metta_test_nars_1.pl index e80375a7..4a2f432f 100755 --- a/metta_vspace/pyswip/metta_test_nars_1.pl +++ b/metta_vspace/pyswip/metta_test_nars_1.pl @@ -370,8 +370,8 @@ metta_defn_ES(['|-',[[['$OBJ'(claz_bracket_vector,['$S'])],-->,A],B]] , [[['$OBJ'(claz_bracket_vector,['$S'])],<->,A],['Truth_StructuralIntersection',B]]). metta_defn_ES(['|-',[[['{',A,'}'],-->,B],C],[[D,<->,A],E]] , [[['{',D,'}'],-->,B],['Truth_Analogy',C,E]]). metta_defn_ES(['|-',[[A,-->,['$OBJ'(claz_bracket_vector,['$M'])]],B],[[_,<->,_],C]] , [[A,-->,['$OBJ'(claz_bracket_vector,['$S'])]],['Truth_Analogy',B,C]]). -metta_defn_ES([=,['|-',[[['{',A,'}'],<->,['{',B,'}']]],[A,<->,B],['Truth_StructuralIntersection',_]]]). -metta_defn_ES([=,['|-',[[['$OBJ'(claz_bracket_vector,[A])],<->,['$OBJ'(claz_bracket_vector,[B])]]],[_,<->,_],['Truth_StructuralIntersection',_]]]). +get_metta_atom(Eq,'&self',[=,['|-',[[['{',A,'}'],<->,['{',B,'}']]],[A,<->,B],['Truth_StructuralIntersection',_]]]). +get_metta_atom(Eq,'&self',[=,['|-',[[['$OBJ'(claz_bracket_vector,[A])],<->,['$OBJ'(claz_bracket_vector,[B])]]],[_,<->,_],['Truth_StructuralIntersection',_]]]). % ;;NAL-3 % ;;!Set decomposition: metta_defn_ES(['|-',[[['{',A,_,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). diff --git a/metta_vspace/pyswip/metta_testing.pl b/metta_vspace/pyswip/metta_testing.pl index fcc96473..ef36d30c 100755 --- a/metta_vspace/pyswip/metta_testing.pl +++ b/metta_vspace/pyswip/metta_testing.pl @@ -108,7 +108,7 @@ (%atom_concat(TEE_FILE,'.UNITS',UNITS), UNITS = '/tmp/SHARED.UNITS', open(UNITS, append, Stream,[encoding(utf8)]), - format(Stream,'| ~w | [~w](https://htmlpreview.github.io/?https://raw.githubusercontent.com/logicmoo/vspace-metta/main/reports/~w.metta.html#~w) | ~@ | ~@ | ~@ |~n', + format(Stream,'| ~w | [~w](https://htmlpreview.github.io/?https://raw.githubusercontent.com/logicmoo/vspace-metta/main/reports/cuRRent/~w.metta.html#~w) | ~@ | ~@ | ~@ |~n', [PASS_FAIL,TestName,Base,TestName,trim_gstring(with_indents(false,write_src([P,C])),200), trim_gstring(with_indents(false,write_src(G1)),100),with_indents(false,write_src(G2))]),!, close(Stream))). diff --git a/metta_vspace/pyswip/metta_types.pl b/metta_vspace/pyswip/metta_types.pl index f40155de..cc99d99a 100755 --- a/metta_vspace/pyswip/metta_types.pl +++ b/metta_vspace/pyswip/metta_types.pl @@ -1,9 +1,7 @@ -:- throw(metta_types). - -mnotrace(G):- notrace(G). +mnotrace(G):- once(G). is_decl_type(ST):- metta_type(_,_,Type),sub_sterm(T,Type),T=@=ST, \+ nontype(ST). is_decl_type([ST|_]):- !, atom(ST),is_decl_type_l(ST). @@ -239,7 +237,7 @@ into_typed_arg(Depth,Self,T,M,Y), into_typed_args(Depth,Self,TT,MM,YY). -into_typed_arg(Depth,Self,T,M,Y):- var(M),!,Y=M,put_attr(M,metta_vtype,typed_arg(Depth,Self,T)). +into_typed_arg(_Dpth,Self,T,M,Y):- var(M),!,put_attr(M,metta_type,Self=T),put_attr(Y,metta_type,Self=T),Y=M. into_typed_arg(Depth,Self,T,M,Y):- into_typed_arg0(Depth,Self,T,M,Y)*->true;M=Y. into_typed_arg0(Depth,Self,T,M,Y):- var(T), !, get_type(Depth,Self,M,T), @@ -253,10 +251,10 @@ set_type(Depth,Self,Var,Type):- nop(set_type(Depth,Self,Var,Type)),!. set_type(Depth,Self,Var,Type):- get_type(Depth,Self,Var,Was) *->Was=Type - ; if_t(var(Var),put_attr(Var,metta_vtype,typed_arg(Depth,Self,Type)). + ; if_t(var(Var),put_attr(Var,metta_type,Self=Type)). -metta_vtype:attr_unify_hook(typed_arg(Depth,Self,Type),NewValue):- - get_type(Depth,Self,NewValue,Was), +metta_type:attr_unify_hook(Self=Type,NewValue):- + get_type(20,Self,NewValue,Was), can_assign(Was,Type). can_assign(Was,Type):- Was=Type,!. @@ -311,8 +309,6 @@ is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. -is_syspred0(H,Len,Pred):- atom_concat(Mid,'-fn',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. -is_syspred0(H,Len,Pred):- atom_concat(Mid,'-p',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. %is_function(F):- atom(F). is_metta_data_functor(Eq,_Othr,H):- clause(is_data_functor(H),_). @@ -332,7 +328,7 @@ metta_type(Self,Op,['->'|List]), append(Params,[RetType],List). get_operator_typedef2(Self,Op,Params,RetType):- - nop(fbug(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. + nop(wdmsg(missing(get_operator_typedef2(Self,Op,Params,RetType)))),!,fail. is_metta_data_functor(Eq,F):- current_self(Self),is_metta_data_functor(Eq,Self,F). diff --git a/metta_vspace/pyswip/metta_utils.pl b/metta_vspace/pyswip/metta_utils.pl index e96034a0..fae8da81 100755 --- a/metta_vspace/pyswip/metta_utils.pl +++ b/metta_vspace/pyswip/metta_utils.pl @@ -24,13 +24,13 @@ get_user_error(UE):- stream_property(UE,file_no(2)),!. get_user_error(UE):- stream_property(UE,alias(user_error)),!. -ufmt(G):- notrace((fbug(G)->true;ufmt0(G))). +ufmt(G):- fbug(G)->true;ufmt0(G). ufmt0(G):- fmt(G)->true;writeln(G). u_dmsg(G):- is_list(G),!,my_maplist(u_dmsg,G). u_dmsg(M):- get_user_error(UE), \+ current_predicate(with_toplevel_pp/2),!, with_output_to(UE,ufmt(M)). u_dmsg(M):- get_user_error(UE),!, with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))). u_dmsg(M):- get_user_error(UE), stream_property(UO,file_no(1)), current_output(CO),!, - (UO==CO -> fbug(M) ; + (UO==CO -> dmsg(M) ; (with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))), with_output_to(CO,pp(M)))). u_dmsg(G):-ufmt(G),!. @@ -131,8 +131,8 @@ -:- if(\+ current_predicate(fbug/1)). -%fbug(P):- format(user_error,'~N~p~n',[P]). +:- if(\+ current_predicate(wdmsg/1)). +%wdmsg(P):- format(user_error,'~N~p~n',[P]). :- endif. @@ -153,8 +153,8 @@ ncatch(G,E,F):- catch(G,E,F). mcatch(G,E,F):- catch(G,E,F). -%mcatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),ignore(call(F)),throw(E))). -%ncatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),call(G))). +%mcatch(G,E,F):- catch(G,E,(wdmsg(G=E),catch(bt,_,fail),wdmsg(G=E),ignore(call(F)),throw(E))). +%ncatch(G,E,F):- catch(G,E,(wdmsg(G=E),catch(bt,_,fail),wdmsg(G=E),call(G))). %ncatch(G,E,(F)). @@ -201,7 +201,7 @@ %tc_arg(N,C,E):- compound(C),!,arg(N,C,E). tc_arg(N,C,E):- catch(arg(N,C,E),Err, - /*unrepress_output*/((bt,fbug(tc_arg(N,C,E)=Err),((tracing->true;trace),break,arg(N,C,E))))). + /*unrepress_output*/((bt,wdmsg(tc_arg(N,C,E)=Err),((tracing->true;trace),break,arg(N,C,E))))). @@ -214,8 +214,8 @@ :- multifile(user:message_hook/3). :- dynamic(user:message_hook/3). -%user:message_hook(Term, Kind, Lines):- error==Kind, itrace,fbug(user:message_hook(Term, Kind, Lines)),trace,fail. -user:message_hook(Term, Kind, Lines):- error==Kind, fbug(user:message_hook(Term, Kind, Lines)),fail. +%user:message_hook(Term, Kind, Lines):- error==Kind, itrace,wdmsg(user:message_hook(Term, Kind, Lines)),trace,fail. +user:message_hook(Term, Kind, Lines):- error==Kind, wdmsg(user:message_hook(Term, Kind, Lines)),fail. :- meta_predicate(must_det_ll(0)). :- meta_predicate(must_det_ll1(1,0)). @@ -288,8 +288,8 @@ strip_module(X,M,P),functor(P,F,A),setup_call_cleanup(nop(trace(M:F/A,+fail)),(must_not_error(call(P1,X))*->true;md_failed(P1,X)), nop(trace(M:F/A,-fail))),!. -ugtrace(_):- option_value(testing,true),!, give_up(5). -ugtrace(G):- notrace,trace,rtrace(G). +ugtrace(_):- option_value(testing,true),!, halt(5). +ugtrace(G):- rtrace(G). %ugtrace(G):- ggtrace(G). %must_not_error(G):- must(once(G)). @@ -298,7 +298,7 @@ must_not_error(G):- notrace(is_cgi),!, ncatch((G),E,((u_dmsg(E=G)))). %must_not_error(X):- is_guitracer,!, call(X). %must_not_error(G):- !, call(G). -must_not_error(X):- !,ncatch(X,E,(fbug(E=X),ugtrace(X))). +must_not_error(X):- !,ncatch(X,E,(wdmsg(E=X),ugtrace(X))). must_not_error(X):- ncatch(X,E,(rethrow_abort(E);(/*arcST,*/writeq(E=X),pp(etrace=X), trace, rrtrace(visible_rtrace([-all,+exception]),X)))). @@ -322,20 +322,18 @@ can_rrtrace:- nb_setval(cant_rrtrace,f). %md_failed(P1,X):- predicate_property(X,number_of_clauses(1)),clause(X,(A,B,C,Body)), (B\==!),!,must_det_ll(A),must_det_ll((B,C,Body)). md_failed(P1,G):- never_rrtrace,!,notrace,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). -md_failed(_P1,_G):- option_value(testing,true),!,give_up(6). +md_failed(_P1,_G):- option_value(testing,true),!,halt(6). md_failed(_,_):- never_rrtrace,!,fail. md_failed(P1,G):- tracing,/*notrace*/(u_dmsg(md_failed(P1,G))),!,fail. md_failed(P1,G):- main_debug,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). md_failed(P1,G):- is_cgi,!, u_dmsg(arc_html(md_failed(P1,G))). md_failed(P1,X):- notrace,is_guitracer,u_dmsg(failed(X))/*,arcST*/,nortrace,atrace, call(P1,X). -md_failed(P1,X):- - u_dmsg(failed(P1,X))/*,arcST*/,nortrace,atrace, +md_failed(P1,X):- u_dmsg(failed(P1,X))/*,arcST*/,nortrace,atrace, trace,visible_rtrace([-all,+fail,+call,+exception],X). % must_det_ll(X):- must_det_ll(X),!. :- meta_predicate(rrtrace(0)). rrtrace(X):- rrtrace(etrace,X). -give_up(_):- throw('$aborted'). is_guitracer:- getenv('DISPLAY',_), current_prolog_flag(gui_tracer,true). :- meta_predicate(rrtrace(1,0)). @@ -668,11 +666,11 @@ plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). my_assertion(G):- call(G),!. -my_assertion(G):- fbug(my_assertion(G)),writeq(goal(G)),nl,!,break. +my_assertion(G):- wdmsg(my_assertion(G)),writeq(goal(G)),nl,!,break. must_be_free(AllNew):- plain_var(AllNew),!. -must_be_free(AllNew):- arcST,fbug(must_be_free(AllNew)),break,fail. +must_be_free(AllNew):- arcST,wdmsg(must_be_free(AllNew)),break,fail. must_be_nonvar(AllNew):- nonvar_or_ci(AllNew),!. -must_be_nonvar(AllNew):- arcST,fbug(must_be_nonvar(AllNew)),break,fail. +must_be_nonvar(AllNew):- arcST,wdmsg(must_be_nonvar(AllNew)),break,fail. my_len(X,Y):- var(X),!,length(X,Y). my_len(X,Y):- is_list(X),!,length(X,Y). @@ -2483,7 +2481,7 @@ share_vars(Vs,Name=Value):- member(VName=VValue,Vs),VName==Name,!,(Value=VValue->true;trace_or_throw(cant(share_vars(Vs,Name=Value)))). share_vars(_,Name=_):- string_concat('_',_,Name),!. % Hide some vars -share_vars(V,Name=Value):- fbug(missing(share_vars(V,Name=Value))),!. +share_vars(V,Name=Value):- dmsg(missing(share_vars(V,Name=Value))),!. diff --git a/metta_vspace/pyswip/swi_flybase.pl b/metta_vspace/pyswip/swi_flybase.pl old mode 100644 new mode 100755 diff --git a/metta_vspace/pyswip_lng/chars.data b/metta_vspace/pyswip_lng/chars.data deleted file mode 100755 index 91070ff5..00000000 --- a/metta_vspace/pyswip_lng/chars.data +++ /dev/null @@ -1,38781 +0,0 @@ -:-module(lisp_code_names,[lisp_code_name/2]). -:- set_module(class(library)). -:- set_prolog_flag(double_quotes,chars). - -lisp_code_name(0,"Nul"). -lisp_code_name(1,"Soh"). -lisp_code_name(2,"Stx"). -lisp_code_name(3,"Etx"). -lisp_code_name(4,"Eot"). -lisp_code_name(5,"Enq"). -lisp_code_name(6,"Ack"). -lisp_code_name(7,"Bel"). -lisp_code_name(8,"Backspace"). -lisp_code_name(9,"Tab"). -lisp_code_name(10,"Newline"). -lisp_code_name(11,"Vt"). -lisp_code_name(12,"Page"). -lisp_code_name(13,"Return"). -lisp_code_name(14,"So"). -lisp_code_name(15,"Si"). -lisp_code_name(16,"Dle"). -lisp_code_name(17,"Dc1"). -lisp_code_name(18,"Dc2"). -lisp_code_name(19,"Dc3"). -lisp_code_name(20,"Dc4"). -lisp_code_name(21,"Nak"). -lisp_code_name(22,"Syn"). -lisp_code_name(23,"Etb"). -lisp_code_name(24,"Can"). -lisp_code_name(25,"Em"). -lisp_code_name(26,"Sub"). -lisp_code_name(27,"Esc"). -lisp_code_name(28,"Fs"). -lisp_code_name(29,"Gs"). -lisp_code_name(30,"Rs"). -lisp_code_name(31,"Us"). -lisp_code_name(32,"Space"). -lisp_code_name(33,"EXCLAMATION_MARK"). -lisp_code_name(34,"QUOTATION_MARK"). -lisp_code_name(35,"NUMBER_SIGN"). -lisp_code_name(36,"DOLLAR_SIGN"). -lisp_code_name(37,"PERCENT_SIGN"). -lisp_code_name(38,"AMPERSAND"). -lisp_code_name(39,"APOSTROPHE"). -lisp_code_name(40,"LEFT_PARENTHESIS"). 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-lisp_code_name(194996,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B4"). -lisp_code_name(194997,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B5"). -lisp_code_name(194998,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B6"). -lisp_code_name(194999,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B7"). -lisp_code_name(195000,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B8"). -lisp_code_name(195001,"CJK_COMPATIBILITY_IDEOGRAPH-2F9B9"). -lisp_code_name(195002,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BA"). -lisp_code_name(195003,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BB"). -lisp_code_name(195004,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BC"). -lisp_code_name(195005,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BD"). -lisp_code_name(195006,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BE"). -lisp_code_name(195007,"CJK_COMPATIBILITY_IDEOGRAPH-2F9BF"). -lisp_code_name(195008,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C0"). -lisp_code_name(195009,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C1"). -lisp_code_name(195010,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C2"). -lisp_code_name(195011,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C3"). -lisp_code_name(195012,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C4"). -lisp_code_name(195013,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C5"). -lisp_code_name(195014,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C6"). -lisp_code_name(195015,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C7"). -lisp_code_name(195016,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C8"). -lisp_code_name(195017,"CJK_COMPATIBILITY_IDEOGRAPH-2F9C9"). -lisp_code_name(195018,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CA"). -lisp_code_name(195019,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CB"). -lisp_code_name(195020,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CC"). -lisp_code_name(195021,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CD"). -lisp_code_name(195022,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CE"). -lisp_code_name(195023,"CJK_COMPATIBILITY_IDEOGRAPH-2F9CF"). -lisp_code_name(195024,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D0"). -lisp_code_name(195025,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D1"). -lisp_code_name(195026,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D2"). -lisp_code_name(195027,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D3"). -lisp_code_name(195028,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D4"). -lisp_code_name(195029,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D5"). -lisp_code_name(195030,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D6"). -lisp_code_name(195031,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D7"). -lisp_code_name(195032,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D8"). -lisp_code_name(195033,"CJK_COMPATIBILITY_IDEOGRAPH-2F9D9"). -lisp_code_name(195034,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DA"). -lisp_code_name(195035,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DB"). -lisp_code_name(195036,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DC"). -lisp_code_name(195037,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DD"). -lisp_code_name(195038,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DE"). -lisp_code_name(195039,"CJK_COMPATIBILITY_IDEOGRAPH-2F9DF"). -lisp_code_name(195040,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E0"). -lisp_code_name(195041,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E1"). -lisp_code_name(195042,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E2"). -lisp_code_name(195043,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E3"). -lisp_code_name(195044,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E4"). -lisp_code_name(195045,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E5"). -lisp_code_name(195046,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E6"). -lisp_code_name(195047,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E7"). -lisp_code_name(195048,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E8"). -lisp_code_name(195049,"CJK_COMPATIBILITY_IDEOGRAPH-2F9E9"). -lisp_code_name(195050,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EA"). -lisp_code_name(195051,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EB"). -lisp_code_name(195052,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EC"). -lisp_code_name(195053,"CJK_COMPATIBILITY_IDEOGRAPH-2F9ED"). -lisp_code_name(195054,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EE"). -lisp_code_name(195055,"CJK_COMPATIBILITY_IDEOGRAPH-2F9EF"). -lisp_code_name(195056,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F0"). -lisp_code_name(195057,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F1"). -lisp_code_name(195058,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F2"). -lisp_code_name(195059,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F3"). -lisp_code_name(195060,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F4"). -lisp_code_name(195061,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F5"). -lisp_code_name(195062,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F6"). -lisp_code_name(195063,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F7"). -lisp_code_name(195064,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F8"). -lisp_code_name(195065,"CJK_COMPATIBILITY_IDEOGRAPH-2F9F9"). -lisp_code_name(195066,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FA"). -lisp_code_name(195067,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FB"). -lisp_code_name(195068,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FC"). -lisp_code_name(195069,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FD"). -lisp_code_name(195070,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FE"). -lisp_code_name(195071,"CJK_COMPATIBILITY_IDEOGRAPH-2F9FF"). -lisp_code_name(195072,"CJK_COMPATIBILITY_IDEOGRAPH-2FA00"). -lisp_code_name(195073,"CJK_COMPATIBILITY_IDEOGRAPH-2FA01"). -lisp_code_name(195074,"CJK_COMPATIBILITY_IDEOGRAPH-2FA02"). -lisp_code_name(195075,"CJK_COMPATIBILITY_IDEOGRAPH-2FA03"). -lisp_code_name(195076,"CJK_COMPATIBILITY_IDEOGRAPH-2FA04"). -lisp_code_name(195077,"CJK_COMPATIBILITY_IDEOGRAPH-2FA05"). -lisp_code_name(195078,"CJK_COMPATIBILITY_IDEOGRAPH-2FA06"). -lisp_code_name(195079,"CJK_COMPATIBILITY_IDEOGRAPH-2FA07"). -lisp_code_name(195080,"CJK_COMPATIBILITY_IDEOGRAPH-2FA08"). -lisp_code_name(195081,"CJK_COMPATIBILITY_IDEOGRAPH-2FA09"). -lisp_code_name(195082,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0A"). -lisp_code_name(195083,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0B"). -lisp_code_name(195084,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0C"). -lisp_code_name(195085,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0D"). -lisp_code_name(195086,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0E"). -lisp_code_name(195087,"CJK_COMPATIBILITY_IDEOGRAPH-2FA0F"). -lisp_code_name(195088,"CJK_COMPATIBILITY_IDEOGRAPH-2FA10"). -lisp_code_name(195089,"CJK_COMPATIBILITY_IDEOGRAPH-2FA11"). -lisp_code_name(195090,"CJK_COMPATIBILITY_IDEOGRAPH-2FA12"). -lisp_code_name(195091,"CJK_COMPATIBILITY_IDEOGRAPH-2FA13"). -lisp_code_name(195092,"CJK_COMPATIBILITY_IDEOGRAPH-2FA14"). -lisp_code_name(195093,"CJK_COMPATIBILITY_IDEOGRAPH-2FA15"). -lisp_code_name(195094,"CJK_COMPATIBILITY_IDEOGRAPH-2FA16"). -lisp_code_name(195095,"CJK_COMPATIBILITY_IDEOGRAPH-2FA17"). -lisp_code_name(195096,"CJK_COMPATIBILITY_IDEOGRAPH-2FA18"). -lisp_code_name(195097,"CJK_COMPATIBILITY_IDEOGRAPH-2FA19"). -lisp_code_name(195098,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1A"). -lisp_code_name(195099,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1B"). -lisp_code_name(195100,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1C"). -lisp_code_name(195101,"CJK_COMPATIBILITY_IDEOGRAPH-2FA1D"). - -:- endif. - diff --git a/metta_vspace/pyswip_lng/chars.data b/metta_vspace/pyswip_lng/chars.data new file mode 120000 index 00000000..f777267c --- /dev/null +++ b/metta_vspace/pyswip_lng/chars.data @@ -0,0 +1 @@ +../pyswip/chars.data \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_convert.pl b/metta_vspace/pyswip_lng/flybase_convert.pl deleted file mode 100755 index 4ce70154..00000000 --- a/metta_vspace/pyswip_lng/flybase_convert.pl +++ /dev/null @@ -1,10 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). - -:- ensure_loaded(flybase_main). -:- ensure_loaded(flybase_json). -:- ensure_loaded(flybase_obo). -%:- ensure_loaded(swi_support). - - diff --git a/metta_vspace/pyswip_lng/flybase_convert.pl b/metta_vspace/pyswip_lng/flybase_convert.pl new file mode 120000 index 00000000..c05a81ff --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_convert.pl @@ -0,0 +1 @@ +../pyswip/flybase_convert.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_induced_types.pl b/metta_vspace/pyswip_lng/flybase_induced_types.pl deleted file mode 100755 index 09a771ee..00000000 --- a/metta_vspace/pyswip_lng/flybase_induced_types.pl +++ /dev/null @@ -1,1647 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -/* -Finding Publications That Link Multiple Mutations -SQL Version: - -SELECT P1.title AS Publication1, M1.name AS Mutation1, P2.title AS Publication2, M2.name AS Mutation2 -FROM Mutation AS M1 -INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id -INNER JOIN Publication AS P1 ON MP1.publication_id = P1.id -INNER JOIN MutationPublication AS MP2 ON M1.id != MP2.mutation_id -INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id -INNER JOIN Publication AS P2 ON MP2.publication_id = P2.id AND P1.id = P2.id -WHERE M1.name != M2.name -*/ - - - -linked_mutations(Publication1, Mutation1, Publication2, Mutation2) :- - mutation(M1_id, Mutation1), - mutation_publication(M1_id, MP1_id), - publication(MP1_id, Publication1), - mutation_publication(M2_id, MP2_id), - mutation(M2_id, Mutation2), - publication(MP2_id, Publication2), - M1_id \= M2_id, - Mutation1 \= Mutation2, - MP1_id = MP2_id. - -/* - Publications Discussing Mutations in Related Genes -SQL Version: - -SELECT G1.name AS Gene1, M1.name AS Mutation1, G2.name AS Gene2, M2.name AS Mutation2, P.title -FROM Gene AS G1 -INNER JOIN Mutation AS M1 ON G1.id = M1.gene_id -INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id -INNER JOIN Publication AS P ON MP1.publication_id = P.id -INNER JOIN Mutation AS M2 ON P.id IN (SELECT publication_id FROM MutationPublication WHERE mutation_id = M2.id) -INNER JOIN Gene AS G2 ON M2.gene_id = G2.id AND G1.id != G2.id -WHERE G1.function = G2.function OR G1.pathway = G2.pathway -*/ - - - -related_genes_publication(Gene1, Mutation1, Gene2, Mutation2, Title) :- - gene(G1_id, Gene1, Function1, Pathway1), - mutation(M1_id, Mutation1), - mutation_gene(M1_id, G1_id), - mutation_publication(M1_id, MP1_id), - publication(MP1_id, Title), - gene(G2_id, Gene2, Function2, Pathway2), - mutation(M2_id, Mutation2), - mutation_gene(M2_id, G2_id), - mutation_publication(M2_id, MP2_id), - publication(MP2_id, Title), - G1_id \= G2_id, - (Function1 = Function2; Pathway1 = Pathway2). - -/* - - Publications Linking Phenotypic Effects of Different Mutations -SQL Version: - -SELECT M1.name AS Mutation1, P1.description AS Phenotype1, M2.name AS Mutation2, P2.description AS Phenotype2, Pub.title -FROM Mutation AS M1 -INNER JOIN Phenotype AS P1 ON M1.phenotype_id = P1.id -INNER JOIN MutationPublication AS MP1 ON M1.id = MP1.mutation_id -INNER JOIN Publication AS Pub ON MP1.publication_id = Pub.id -INNER JOIN MutationPublication AS MP2 ON Pub.id = MP2.publication_id AND MP1.mutation_id != MP2.mutation_id -INNER JOIN Mutation AS M2 ON MP2.mutation_id = M2.id -INNER JOIN Phenotype AS P2 ON M2.phenotype_id = P2.id -*/ - - - -linked_phenotypes(Publication, Mutation1, Phenotype1, Mutation2, Phenotype2) :- - mutation(M1_id, Mutation1), - mutation_phenotype(M1_id, P1_id), - phenotype(P1_id, Phenotype1), - mutation_publication(M1_id, MP1_id), - publication(MP1_id, Publication), - mutation_publication(M2_id, MP2_id), - mutation(M2_id, Mutation2), - mutation_phenotype(M2_id, P2_id), - phenotype(P2_id, Phenotype2), - publication(MP2_id, Publication), - M1_id \= M2_id. - - - - -/* - - Gene Expression and Phenotypes -SQL Version: - - -SELECT Gene.name, Expression.tissue, Phenotype.description -FROM Gene -INNER JOIN Expression ON Gene.id = Expression.gene_id -INNER JOIN Phenotype ON Gene.id = Phenotype.gene_id -WHERE Expression.tissue = 'wing disc' AND Phenotype.description LIKE '%wing defects%' -*/ - - - -gene_expression_phenotype(GeneName, Tissue, PhenotypeDescription) :- - gene(GeneId, GeneName), - expression(GeneId, Tissue), - Tissue = 'wing disc', - phenotype(GeneId, PhenotypeDescription), - sub_string(PhenotypeDescription, _, _, _, 'wing defects'). - -/* - Protein-Protein Interactions -SQL Version: - -SELECT Protein1.name, Protein2.name -FROM Protein AS Protein1 -INNER JOIN Interaction ON Protein1.id = Interaction.protein1_id -INNER JOIN Protein AS Protein2 ON Interaction.protein2_id = Protein2.id -WHERE Protein1.name = 'protein_of_interest' -*/ - - - -protein_interaction(ProteinName1, ProteinName2) :- - protein(Protein1Id, ProteinName1), - ProteinName1 = 'protein_of_interest', - interaction(Protein1Id, Protein2Id), - protein(Protein2Id, ProteinName2). - -/* - Genetic Modifiers of a Mutation -SQL Version: - -SELECT ModifierGene.name, Mutation.name, ModifiedPhenotype.description -FROM Gene AS ModifierGene -INNER JOIN GeneticInteraction ON ModifierGene.id = GeneticInteraction.modifier_gene_id -INNER JOIN Mutation ON GeneticInteraction.mutation_id = Mutation.id -INNER JOIN Phenotype AS ModifiedPhenotype ON Mutation.phenotype_id = ModifiedPhenotype.id -WHERE Mutation.name = 'specific_mutation' -*/ - - - -genetic_modifier(ModifierGeneName, MutationName, PhenotypeDescription) :- - gene(ModifierGeneId, ModifierGeneName), - genetic_interaction(ModifierGeneId, MutationId), - mutation(MutationId, MutationName), - MutationName = 'specific_mutation', - phenotype(MutationId, PhenotypeDescription). - -/* -4. Gene Ontology (GO) Annotations -SQL Version: - -SELECT Gene.name, GOAnnotation.GO_term, GOAnnotation.description -FROM Gene -INNER JOIN GOAnnotation ON Gene.id = GOAnnotation.gene_id -WHERE Gene.name IN ('gene1', 'gene2', 'gene3') -*/ - - - -gene_go_annotation(GeneName, GOTerm, GODescription) :- - gene(GeneId, GeneName), - fb-member(GeneName, ['gene1', 'gene2', 'gene3']), - go_annotation(GeneId, GOTerm, GODescription). - - -/* - -SELECT Strain.name, StockCenter.name, StockCenter.location -FROM Strain -INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id -WHERE Strain.name LIKE '%desired_trait%' -ChatGPT -Translating these SQL queries to Prolog predicates involves creating a set of Prolog facts and rules that mimic the structure and logic of the SQL database and queries. Here's how each of these queries can be represented in Prolog: - - Gene Alleles and Associated Diseases - -SELECT Gene.name, Allele.name, Disease.human_disease -FROM Gene -INNER JOIN Allele ON Gene.id = Allele.gene_id -LEFT JOIN Disease ON Allele.disease_id = Disease.id -WHERE Gene.name = 'target_gene_name' -*/ - - - -gene_allele_disease(GeneName, AlleleName, HumanDisease) :- - gene(GeneId, GeneName), - GeneName = 'target_gene_name', - allele(GeneId, AlleleId, AlleleName), - ( disease(AlleleId, HumanDisease) - ; HumanDisease = 'No associated disease'). - -/* - - Transcription Factors Regulating a Gene -SQL Version: -SELECT TranscriptionFactor.name, TargetGene.name, Regulation.type -FROM Gene AS TranscriptionFactor -INNER JOIN GeneRegulation AS Regulation ON TranscriptionFactor.id = Regulation.transcription_factor_id -INNER JOIN Gene AS TargetGene ON Regulation.target_gene_id = TargetGene.id -WHERE TargetGene.name = 'specific_target_gene' -*/ - - - -transcription_factor_regulation(TranscriptionFactorName, TargetGeneName, RegulationType) :- - gene(TranscriptionFactorId, TranscriptionFactorName), - gene_regulation(TranscriptionFactorId, TargetGeneId, RegulationType), - gene(TargetGeneId, TargetGeneName), - TargetGeneName = 'specific_target_gene'. - -/* - - Publications Related to a Gene Mutation -SQL Version: - -SELECT Mutation.name, Publication.title, Publication.authors -FROM Mutation -INNER JOIN MutationPublication ON Mutation.id = MutationPublication.mutation_id -INNER JOIN Publication ON MutationPublication.publication_id = Publication.id -WHERE Mutation.name = 'specific_mutation_name' -*/ - - - -mutation_publication_info(MutationName, Title, Authors) :- - mutation(MutationId, MutationName), - MutationName = 'specific_mutation_name', - mutation_publication(MutationId, PublicationId), - publication(PublicationId, Title, Authors). - -/* - -4. RNAi Knockdown Effects on Phenotype -SQL Version: - -SELECT Gene.name, RNAiExperiment.description, Phenotype.description -FROM Gene -INNER JOIN RNAiExperiment ON Gene.id = RNAiExperiment.gene_id -INNER JOIN Phenotype ON RNAiExperiment.phenotype_id = Phenotype.id -WHERE Gene.name = 'gene_of_interest' -*/ - - - -rnai_knockdown_phenotype(GeneName, RNAiDescription, PhenotypeDescription) :- - gene(GeneId, GeneName), - GeneName = 'gene_of_interest', - rnai_experiment(GeneId, RNAiId, RNAiDescription), - phenotype(RNAiId, PhenotypeDescription). - - - -/* -5. Stock Center Information for Specific Strains - -SELECT Strain.name, StockCenter.name, StockCenter.location -FROM Strain -INNER JOIN StockCenter ON Strain.stock_center_id = StockCenter.id -WHERE Strain.name LIKE '%desired_trait%' -*/ -stock_center_info(StrainName, StockCenterName, Location) :- - strain(StrainId, StrainName), - sub_string(StrainName, _, _, _, 'desired_trait'), - stock_center(StrainId, StockCenterId, StockCenterName, Location). - - - - - - - -flybase_tables([ -analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, -cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, -cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, -loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, -expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, -feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, -feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, -feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, -feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, -featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, -genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, -grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, -grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, -humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, -humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, -humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, -interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, -interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, -library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, -library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, - libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, - organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, - phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, - sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, - stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, - strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, -strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). - -/* -table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). -table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). -table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). -table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). -table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). -table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). -table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). -*//* -table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). -table_n_type(fbgn_uniprot, 2, gene_symbol, _). -table_n_type(fbgn_uniprot, 3, 'CG', _). -table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). -table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). -table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). -table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -*/ - - -ncRNA_genes_fb_scheme( -' -{ - "$schema": "http://json-schema.org/draft-04/schema#", - "title": "RNAcentral ncRNA object", - "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", - "id": "ncrna.json#", - "type": "object", - "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], - "additionalProperties": false, - "properties": { - "primaryId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." - }, - "taxonId": { - "$ref" : "global-id.json#/properties/globalId", - "description" : "The NCBI taxonId for the species of the gene entity." - }, - "soTermId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." - }, - "ecoTermId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The ECO Term that represents the evidence for this sequence having the given SO term." - }, - "sequence": { - "$ref": "sequence.json#properties/sequence", - "description": "The DNA sequence of this entry." - }, - "name": { - "type": "string", - "description": "The name of this sequence." - }, - "description": { - "type": "string", - "description": "An informative human readable description. If not provided then it will be generated using the name and species information." - }, - "symbol": { - "type": "string", - "description": "The symbol for this ncRNA" - }, - "symbolSynonyms": { - "type": "array", - "items": { - "type": "string" - }, - "uniqueItems": true, - "description": "A list of other symbols for the ncRNA" - }, - "version": { - "description": "The version of this sequence, if any" - }, - "gene": { - "$ref": "gene.json#" - }, - "crossReferenceIds": { - "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", - "type": "array", - "items": { - "$ref" : "global-id.json#/properties/globalId" - }, - "uniqueItems": true - }, - "genomeLocations": { - "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", - "type": "array", - "items": { - "$ref" : "location.json#" - }, - "uniqueItems": true - }, - "url": { - "type": "string", - "format": "uri", - "description": "URL to the page for this entry in the database" - }, - "externalUrl": { - "type": "string", - "format": "uri", - "description": "URL to a synopsis outside the database, like wikipedia." - }, - "secondaryStructure": { - "description": "The secondary structure in dot-bracket notation for this sequence", - "$ref": "secondary-structure.json#/properties/dot_bracket" - }, - "publications": { - "description": "List of references to associate with this sequence.", - "type": "array", - "items": { - "anyOf": [ - { "$ref": "publications.json#/properties/pubMedId" }, - { "$ref": "publications.json#/properties/doi" } - ] - }, - "uniqueItems": true - }, - "localization": { - "description": "Name of the organelle or plasmid this sequence is found in", - "enum": [ - "mitochondria", - "plastid", - "chloroplast", - "plasmid" - ] - }, - "sequenceFeatures": { - "anticodon": { - "description": "Information about the anticodon", - "$ref": "anticodon.json#" - }, - "modifications": { - "description": "List of the modifications in this sequence", - "type": "array", - "items": { - "$ref": "modification.json#" - }, - "uniqueItems": true - } - }, - "sourceModel": { - "description": "Information about the model used to find this sequence", - "$ref" : "global-id.json#/properties/globalId" - }, - "product": { - "description": "The name of the product, this should be more specific than the name of the SO term that was provided", - "type": "string" - }, - "additionalAnnotations": { - "isoType": { - "description": "The isoType of this tRNA", - "enum": [ - "Ala", - "Cys", - "Asp", - "Glu", - "Phe", - "Gly", - "His", - "Ile", - "Lys", - "Leu", - "iMet", - "Met", - "Asn", - "Pro", - "Gln", - "Arg", - "Ser", - "Thr", - "Val", - "Trp", - "Tyr" - ] - } - }, - "relatedSequences": { - "description": "Information about related sequences, like precursors or targets", - "type": "array", - "items": { - "$ref": "related-sequence.json#" - }, - "uniqueItems": true - }, - "inferredPhylogeny": { - "description": "A phylogeny that has been inferred for this sequence", - "$ref": "inferred-phylogeny.json#" - } - } -}'). - -% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference -:- dynamic maybe_corisponds/2. -:- dynamic numeric_value_p_n/3. -:- module_transparent maybe_corisponds/2. -:- module_transparent numeric_value_p_n/3. -column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). -column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). -column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). -column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). -column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). -column_names(automated_gene_summaries, [primary_FBgn, summary_text]). -column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). -column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). -column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). -column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). -column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). -column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). -column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). -column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). -column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). -column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). -column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). -column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). -column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). -column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). -column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). -column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). -column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). -column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). -column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). -column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). -column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). -column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). -column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). -column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). -column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). -column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). -column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). -column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). -column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). -column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). -column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). -column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). -column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). -column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). -column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). -column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). -column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). -column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). -column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). -guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred_nr(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). -maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 3, synonym/6)). -maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(description, 6, stocks/7)). -maybe_corisponds('ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12), 'ConceptMapFn'(uniquename, 5, stocks/7)). -maybe_corisponds('ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4), 'ConceptMapFn'('Allele_used_in_model_(symbol)', 8, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('Based_on_orthology_with_(symbol)', 10, disease_model_annotations/12), 'ConceptMapFn'('Human_gene_symbol', 5, dmel_human_orthologs_disease/8)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4)). -maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_group/7), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_name', 3, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FB_group_name', 3, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_name, 2, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_group/7), 'ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4)). -maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('FB_group_symbol', 2, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FB_group_symbol', 2, gene_groups_HGNC/4), 'ConceptMapFn'('Parent_FB_group_symbol', 5, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBal', 1, fbal_to_fbgn/4), 'ConceptMapFn'('FBal', 7, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBal', 7, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, synonym/6)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_group/7), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 1, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'('FBgg', 4, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgg', 1, gene_groups_HGNC/4), 'ConceptMapFn'(gene_group_id, 1, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, automated_gene_summaries/2), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, best_gene_summary/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, disease_model_annotations/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 1, gene_snapshots/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_functional_complementation/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 2, gene_rpkm_report/12), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 3, gene_map_table/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, dmel_paralogs/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, gene_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('FBgn', 6, pathway_group/7), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('FBpp', 3, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBpp', 10, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). -maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBrf', 3, entity_publication/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBrf', 5, gene_functional_complementation/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('FBtr', 2, fbgn_fbtr_fbpp/3), 'ConceptMapFn'('FBtr', 8, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('GeneName', 3, gene_snapshots/5), 'ConceptMapFn'(species, 2, organism_list/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4), 'ConceptMapFn'(ortholog_gene_symbol, 3, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'('Genetic_map_position', 2, 'cyto-genetic-seq'/4), 'ConceptMapFn'(recombination_loc, 4, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('HGNC', 3, dmel_human_orthologs_disease/8), 'ConceptMapFn'('HGNC', 9, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'('Summary', 4, best_gene_summary/4), 'ConceptMapFn'(gene_snapshot_text, 5, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('GeneSymbol', 3, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 1, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, gene_group/7)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 6, pathway_group/7)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9)). -maybe_corisponds('ConceptMapFn'(_, 1, fbgn_uniprot/4), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'('AlleleSymbol', 2, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'(_, 1, genotype_phenotype/7), 'ConceptMapFn'(allele_symbol, 1, allele_genetic_interactions/4)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 1, fbrf_pmid_pmcid_doi/7)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 1, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 7, genotype_phenotype/7)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 1, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Dmel_gene_symbol', 2, dmel_human_orthologs_disease/8)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_Symbol', 2, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Gene_symbol', 2, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 2, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('GeneSymbol', 4, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, gene_group/7)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Interacting_gene_symbol', 3, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Paralog_GeneSymbol', 7, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'('Starting_gene_symbol', 1, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(_, 1, fbgn_NAseq_Uniprot/9)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 2, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 1, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'(_, 2, genotype_phenotype/7), 'ConceptMapFn'('FBal', 2, allele_genetic_interactions/4)). -maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PMID', 2, fbrf_pmid_pmcid_doi/7)). -maybe_corisponds('ConceptMapFn'(_, 2, pmid_fbgn_uniprot/5), 'ConceptMapFn'('PubMed', 4, entity_publication/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('Dmel_gene', 1, dmel_human_orthologs_disease/8)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, best_gene_summary/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 1, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 2, gene_rpkm_report/12)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbal_to_fbgn/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 4, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 6, dmel_paralogs/11)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FB_gene_symbol', 2, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('FBan', 5, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'('Group_member_FB_gene_symbol', 7, pathway_group/7)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 3, fbgn_uniprot/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'('GeneName', 3, gene_snapshots/5)). -maybe_corisponds('ConceptMapFn'(_, 3, genotype_phenotype/7), 'ConceptMapFn'(current_fullname, 4, synonym/6)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy1_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_exons2affy2_overlaps/2)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 1, fbgn_fbtr_fbpp/3)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 2, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 3, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'('FBgn', 7, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 1, fbgn_uniprot/4)). -maybe_corisponds('ConceptMapFn'(_, 3, pmid_fbgn_uniprot/5), 'ConceptMapFn'(gene_primary_id, 1, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'('EST_accession', 6, cDNA_clone/6)). -maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(accession, 4, genomic_clone/4)). -maybe_corisponds('ConceptMapFn'(_, 4, fbgn_NAseq_Uniprot/9), 'ConceptMapFn'(clone_name, 3, cDNA_clone/6)). -maybe_corisponds('ConceptMapFn'(_, 4, fbgn_uniprot/4), 'ConceptMapFn'(_, 6, fbgn_NAseq_Uniprot/9)). -maybe_corisponds('ConceptMapFn'(_, 5, pmid_fbgn_uniprot/5), 'ConceptMapFn'(_, 4, fbgn_uniprot/4)). -maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 12, disease_model_annotations/12)). -maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 3, entity_publication/4)). -maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 4, allele_genetic_interactions/4)). -maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 5, gene_functional_complementation/5)). -maybe_corisponds('ConceptMapFn'(_, 7, genotype_phenotype/7), 'ConceptMapFn'('FBrf', 6, gene_genetic_interactions/6)). -maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(current_symbol, 2, gene_map_table/6)). -maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(annotation_ID, 6, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6)). -maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(current_symbol, 2, gene_map_table/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(description, 6, stocks/7)). -maybe_corisponds('ConceptMapFn'(current_symbol, 3, synonym/6), 'ConceptMapFn'(uniquename, 5, stocks/7)). -maybe_corisponds('ConceptMapFn'(cytogenetic_loc, 5, gene_map_table/6), 'ConceptMapFn'(estimated_cytogenetic_location, 6, insertion_mapping/7)). -maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(gene_fullname, 3, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_fullname, 5, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_name, 9, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 1, fbgn_annotation_ID/6), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 2, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 2, gene_rpkm_matrix/170), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_symbol, 4, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_symbol, 8, 'Dmel_enzyme'/11)). -maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170)). -maybe_corisponds('ConceptMapFn'(gene_type, 2, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4)). -maybe_corisponds('ConceptMapFn'(gene_type, 4, gene_rpkm_matrix/170), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(identical_protein, 4, dmel_unique_protein_isoforms/4), 'ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11)). -maybe_corisponds('ConceptMapFn'(polypeptide_symbol, 11, fbgn_fbtr_fbpp_expanded/11), 'ConceptMapFn'(representative_protein, 3, dmel_unique_protein_isoforms/4)). -maybe_corisponds('ConceptMapFn'(so_term_name, 3, dmel_gene_sequence_ontology_annotations/4), 'ConceptMapFn'(transcript_type, 7, fbgn_fbtr_fbpp_expanded/11)). -numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). -numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). -numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). -numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). -numeric_value_p_n(dmel_paralogs, 5, 'Strand'). -numeric_value_p_n(entity_publication, 4, 'PubMed'). -numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). -numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). -numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). -numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). -numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). -numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). -numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). -numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). -numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). -numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). -numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). -numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). -numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). -numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). -numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). -numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). -numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). -numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). -numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). -numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). -numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). -numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). -numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). -numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). -numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). -numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). -numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). -numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). -numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). -numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). -numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). -numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). -numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). -numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). -numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). -numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). -numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). -numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). -numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). -numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). -numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). -numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). -numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). -numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). -numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). -numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). -numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). -numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). -numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). -numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). -numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). -numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). -numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). -numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). -numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). -numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). -numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). -numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). -numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). -numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). -numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). -numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). -numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). -numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). -numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). -numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). -numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). -numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). -numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). -numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). -numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). -numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). -numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). -numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). -numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). -numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). -numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). -numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). -numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). -numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). -numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). -numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). -numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). -numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). -numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). -numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). -numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). -numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). -numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). -numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). -numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). -numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). -numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). -numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). -numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). -numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). -numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). -numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). -numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). -numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). -numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). -numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). -numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). -numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). -numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). -numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). -numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). -numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). -numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). -numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). -numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). -numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). -numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). -numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). -numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). -numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). -numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). -numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). -numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). -numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). -numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). -numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). -numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). -numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). -numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). -numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). -numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). -numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). -numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). -numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). -numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). -numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). -numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). -numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). -numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). -numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). -numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). -numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). -numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). -numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). -numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). -numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). -numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). -numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). -numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). -numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). -numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). -numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). -numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). -numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). -numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). -numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). -numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). -numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). -numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). -numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). -numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). -numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). -numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). -numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). -numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). -numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). -numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). -numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). -numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). -numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). -numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). -numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). -numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). -numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). -numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). -numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). -numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). -numeric_value_p_n(gene_snapshots, 4, datestamp). -numeric_value_p_n(insertion_mapping, 5, orientation). -numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). -numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). -table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). -table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). -table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). -table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). -table_n_type('Dmel_enzyme', 1, gene_group_id, _). -table_n_type('Dmel_enzyme', 10, gene_EC_number, _). -table_n_type('Dmel_enzyme', 11, gene_EC_name, _). -table_n_type('Dmel_enzyme', 2, gene_group_name, _). -table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). -table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). -table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). -table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). -table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). -table_n_type('Dmel_enzyme', 8, gene_symbol, _). -table_n_type('Dmel_enzyme', 9, gene_name, _). -table_n_type(allele_genetic_interactions, 1, allele_symbol, _). -table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). -table_n_type(allele_genetic_interactions, 3, interaction, _). -table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). -table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). -table_n_type(automated_gene_summaries, 2, summary_text, _). -table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). -table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). -table_n_type(best_gene_summary, 3, 'Summary_Source', _). -table_n_type(best_gene_summary, 4, 'Summary', _). -table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). -table_n_type(cDNA_clone, 2, organism_abbreviation, _). -table_n_type(cDNA_clone, 3, clone_name, _). -table_n_type(cDNA_clone, 4, dataset_metadata_name, _). -table_n_type(cDNA_clone, 5, cDNA_accession, _). -table_n_type(cDNA_clone, 6, 'EST_accession', _). -table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). -table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). -table_n_type(dataset_metadata, 3, 'Item_ID', _). -table_n_type(dataset_metadata, 4, 'Item_Name', _). -table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). -table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). -table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). -table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). -table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). -table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). -table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). -table_n_type(disease_model_annotations, 5, 'DO', _). -table_n_type(disease_model_annotations, 6, 'DO_term', _). -table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). -table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). -table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). -table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). -table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). -table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). -table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). -table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). -table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). -table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). -table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). -table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). -table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). -table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). -table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). -table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). -table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). -table_n_type(dmel_paralogs, 4, 'Location', _). -table_n_type(dmel_paralogs, 5, 'Strand', _). -table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). -table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). -table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). -table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). -table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). -table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). -table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). -table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). -table_n_type(entity_publication, 1, entity_id, _). -table_n_type(entity_publication, 2, entity_name, _). -table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). -table_n_type(entity_publication, 4, 'PubMed', _). -table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). -table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). -table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). -table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). -table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). -table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). -table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). -table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). -table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). -table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). -table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). -table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). -table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). -table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). -table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). -table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). -table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). -table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). -table_n_type(fbgn_gleanr, 2, gene_symbol, _). -table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_gleanr, 4, 'GLEANR', _). -table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). -table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). -table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). -table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). -table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). -table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). -table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). -table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). -table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). -table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). -table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). -table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). -table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). -table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). -table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). -table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). -table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). -table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). -table_n_type(gene_group, 1, 'FB_group', 'FBgg'). -table_n_type(gene_group, 2, 'FB_group_symbol', _). -table_n_type(gene_group, 3, 'FB_group_name', _). -table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). -table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). -table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). -table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). -table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). -table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(gene_map_table, 1, organism_abbreviation, _). -table_n_type(gene_map_table, 2, current_symbol, _). -table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). -table_n_type(gene_map_table, 4, recombination_loc, _). -table_n_type(gene_map_table, 5, cytogenetic_loc, _). -table_n_type(gene_map_table, 6, sequence_loc, _). -table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). -table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). -table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). -table_n_type(gene_rpkm_matrix, 4, gene_type, _). -table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). -table_n_type(gene_rpkm_report, 1, 'Release_ID', _). -table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). -table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). -table_n_type(gene_rpkm_report, 12, 'Count_used', _). -table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). -table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). -table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). -table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). -table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). -table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). -table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). -table_n_type(gene_rpkm_report, 9, 'Bin_value', _). -table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). -table_n_type(gene_snapshots, 2, 'GeneSymbol', _). -table_n_type(gene_snapshots, 3, 'GeneName', _). -table_n_type(gene_snapshots, 4, datestamp, _). -table_n_type(gene_snapshots, 5, gene_snapshot_text, _). -table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). -table_n_type(genomic_clone, 2, organism_abbreviation, _). -table_n_type(genomic_clone, 3, clone_name, _). -table_n_type(genomic_clone, 4, accession, _). -table_n_type(insertion_mapping, 1, insertion_symbol, _). -table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). -table_n_type(insertion_mapping, 3, genomic_location, _). -table_n_type(insertion_mapping, 4, range, _). -table_n_type(insertion_mapping, 5, orientation, _). -table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). -table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). -table_n_type(organism_list, 1, genus, _). -table_n_type(organism_list, 2, species, _). -table_n_type(organism_list, 3, abbreviation, _). -table_n_type(organism_list, 4, common_name, _). -table_n_type(organism_list, 5, 'NCBI_taxon', _). -table_n_type(organism_list, 6, 'drosophilid?', _). -table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). -table_n_type(pathway_group, 2, 'FB_group_symbol', _). -table_n_type(pathway_group, 3, 'FB_group_name', _). -table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). -table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). -table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). -table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). -table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). -table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). -table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). -table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). -table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). -table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). -table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). -table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). -table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). -table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). -table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). -table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). -table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). -table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). -table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). -table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). -table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). -table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). -table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). -table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). -table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). -table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). -table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). -table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). -table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). -table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). -table_n_type(physical_interactions_mitab, 36, 'Negative', _). -table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). -table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). -table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). -table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). -table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). -table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). -table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). -table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). -table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). -table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). -table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). -table_n_type(physical_interactions_mitab, 9, 'Publication', _). -table_n_type(stocks, 1, stock_id, 'FBst'). -table_n_type(stocks, 2, dbxref_id, _). -table_n_type(stocks, 3, organism_id, _). -table_n_type(stocks, 4, name, _). -table_n_type(stocks, 5, uniquename, _). -table_n_type(stocks, 6, description, _). -table_n_type(stocks, 7, type_id, _). -table_n_type(stocks, 8, is_obsolete, _). -table_n_type(synonym, 1, primary_FBid, 'FBgn'). -table_n_type(synonym, 2, organism_abbreviation, _). -table_n_type(synonym, 3, current_symbol, _). -table_n_type(synonym, 4, current_fullname, _). -table_n_type(synonym, 5, fullname_synonym, _). -table_n_type(synonym, 6, symbol_synonym, _). diff --git a/metta_vspace/pyswip_lng/flybase_induced_types.pl b/metta_vspace/pyswip_lng/flybase_induced_types.pl new file mode 120000 index 00000000..0ac8e89f --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_induced_types.pl @@ -0,0 +1 @@ +../pyswip/flybase_induced_types.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_json.pl b/metta_vspace/pyswip_lng/flybase_json.pl deleted file mode 100755 index efb27c25..00000000 --- a/metta_vspace/pyswip_lng/flybase_json.pl +++ /dev/null @@ -1,640 +0,0 @@ - -% ```prolog - -:- use_module(library(logicmoo_utils)). - - -% facts for creating predcatres -extracted_predicate(transposon, [primaryId, symbol, sequence, url, taxonId, soTermId]). -extracted_predicate(transposon_publications, [primaryId, publications]). -extracted_predicate(transposon_synonyms, [primaryId, symbolSynonyms]). -extracted_predicate(transposon_cross_references, [primaryId, crossReferenceIds]). - -extracted_predicate(gene, [primaryId, - gene_geneId, gene_symbol, gene_url, gene_locusTag, gene_name]). - - -extracted_predicate(N,[gene_geneId,N]):- - member(M,[symbol, url, locusTag, name, synonyms]), atom_concat('gene_',M,N). - - -extracted_predicate(exon_locations, - [primaryId, - genomeLocations_assembly, - genomeLocations_gca_accession, - exons_INSDC_accession, exons_chromosome, exons_strand, - exons_startPosition, - exons_endPosition]). - -extracted_predicate(relatedSequences,[primaryId,relatedSequences_sequenceId, - relatedSequences_relationship]). - -extracted_predicate(gene_synonyms, [gene_geneId, gene_synonyms]). -%extracted_predicate(exon, [primaryId, geneId, 'INSDC_accession', chromosome, strand, startPosition, endPosition]). -extracted_predicate(metadata, [dataProvider, schemaVersion, release, genomicCoordinateSystem, dateProduced]). -%extracted_predicate(exon_locations, [ assembly, chromosome, strand, startPosition, endPosition]). - -extracted_predicate(N,[fbid,M]):- - member(M,[transposons, common_terms, major_stages, major_tissues, name, - pubs, rex_gene, stocks, expression_desc_text, images]), atom_concat('allele_',M,N). -extracted_predicate(allele_image,[fbid,images,images_imageDescription, - images_publicationId, images_pubFigure, images_permission]). -extracted_predicate(allele_image2, - [fbid,images, - imageDescription, publicationId, - pubFigure, permission]). -extracted_predicate(allele_image3, - [fbid, images_imageDescription, - images_publicationId, - images_pubFigure, images_permission]). - -wdmsg_json(G):- nop(fbug(G)). -note_doing(P):- wdmsg_json(P),!,call(user:P). -assert_JSON(P):- note_doing(assert_OBO(P)). - -:- ensure_loaded(flybase_main). -:- ensure_loaded(flybase_obo). - -%:- listing(assert_OBO/1). - -:- dynamic json_kv/2. - -% Base case: an empty curly structure. -mapcurly_or_list(_, {}):-!. -mapcurly_or_list(_, []):-!. -mapcurly_or_list(Pred, [H|T]) :- !, call(Pred, H), mapcurly_or_list(Pred, T). -mapcurly_or_list(Pred, {H,T}):- !, call(Pred, H), mapcurly_or_list(Pred, T). -mapcurly_or_list(Pred, {H}) :- !, call(Pred, H). - - -simple_first(R,_=AA,_=BB):-!, simple_first(R,AA,BB). -simple_first('<',AA,BB):- BB=json(_),AA\=json(_),!. -simple_first('>',AA,BB):- AA=json(_),BB\=json(_),!. -simple_first(R,AA,BB):-!, compare(R,AA,BB). - -prefix_key([O|_],Kee,Key):- atom(O), !, - prefix_key(O,Kee,Key). -prefix_key(O,Kee,Key) :- atom(O), - O\==Kee, O\==data,atomic_list_concat([O,'_',Kee],Key),!. -prefix_key(_,Key,Key). - - - -:- use_module(library(http/json)). - -load_flybase_json(_Fn,File):- - process_json_file(File). - -process_json_file(File):- atom_concat(File,'.metta_x',MXFile),process_json_file(File,MXFile). -process_json_file(_File,MXFile):- fail, exists_file(MXFile),!,process_metta_x_file(MXFile). -process_json_file(File, MXFile):- fail, exists_file(File),!, - setup_call_cleanup( - open(MXFile,write,Strm,[]), - setup_call_cleanup( - set_stream(Strm,alias(metta_x_output)), - with_option(make_metta_x,'True',process_json_file_direct(File)), - set_stream(current_output,alias(metta_x_output))), - close(Strm)), - remove_duplicates(MXFile), - process_metta_x_file(MXFile). -process_json_file(File, _):- process_json_file_direct(File),!. -process_json_file(File, MXFile):- - throw(process_json_file(File, MXFile)). - - -process_json_file_direct(File):- - setup_call_cleanup( - open(File, read, Stream,[encoding(utf8)]), - json_read(Stream, JSONDict), - close(Stream)), - process_json([],JSONDict). - -process_json(JsonString):- process_json([],JsonString),!. - - - - -process_json(O,JsonString) :- atomic(JsonString), !, - atom_json_term(JsonString, Json, []), process_json(O,Json). -process_json(O,json(Values)) :- !, process_json(O,Values). -process_json(O,K=json(Values)) :- !, process_json([K|O],Values). -process_json(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). -process_json(O,Values) :- with_json1(O,Values),!. - -with_json1(O,K=Values) :- K==driver,!, with_json1(O,Values). -with_json1(O,K=Values) :-!, with_json1([K|O],Values). -with_json1(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values). - -with_json1(O,json([driver=json(Values0)])) :- !,with_json2(O,Values0),!. -with_json1(O,json(Values0)) :- is_list(Values0),!,with_json2(O,Values0),!. -with_json1(O,Val):- fbug(error(O=Val)),!. - -with_json2([metaData],_Values0):-!. -with_json2(O,Values):- - retractall(seen_arg(_,_)), - with_json3(O,Values), - ignore((seen_arg(_,_), - fbug(Values), - listing(seen_arg/2))). - -with_json3(O,Values0):- - retractall(json_kv(_,_)), - with_json4(O,Values0), - retractall(json_kv(_,_)),!. - -with_json4(O,[json(Values)]):- !, with_json4(O,Values). -with_json4(O,json(Values)):- !, with_json4(O,Values). -with_json4(O,Values0):- - predsort(simple_first,Values0,Values), - wdmsg_json(O==Values), - ignore(maplist(with_entry(O,assert),Values)). - - -with_entry(O,AR, Key=Value):-!, with_kv([Key|O],AR,Key,Value). -%with_entry(O,assert,JSON) :- !, process_json(O,JSON). -with_entry(O,AR,JSON):- fbug(error_with_entry(O,AR,JSON)). - -uses_id_subprops(images). -key_can_nv(M):- -member(M,[major_stages, major_tissues, name, rex_gene, insertions,transposons, - %expression_desc_text, images, - pubs, stocks]). - -is_field(Field):- extracted_predicate(_,List), \+ \+ member(Field,List),!. - -with_kv_maybe_more(_O,_AR,_Key,json([])):-!. -with_kv_maybe_more(O,AR,Key,Do):- with_kv(O,AR,Key,Do),!. - - -assert_id_about(O,Key,ID,NVAboutID):- - with_json4([Key|O],[Key=ID|NVAboutID]). - - %images= json( [ 'FBal0040476_1.jpg'= json( [ imageDescription='GAL4[Bx-MS1096].jpg', - -with_kv(O,AR,Key,json([ID=json(NVAboutID)|More])):- uses_id_subprops(Key), - %wdmsg_json(cr1(Key)=ID), - atom(ID),!, - decl_type(ID,Key), - with_kv(O,AR,Key,ID), - assert_id_about(O,Key,ID,NVAboutID), - with_kv_maybe_more(O,AR,Key,json(More)). - -with_kv(O,AR,Key,json([ID=Value|More])):- key_can_nv(Key), - atom(Value), - % prefix_key(O,ID,Field), \+ is_field(Field),!, - %prefix_key(O,Value,VField), \+ is_field(VField),!, - decl_type(ID,Key), - with_kv(O,AR,Key,ID), - %atom_concat(Key,'_name',Pred), - %Pred = object_name, - assert_JSON([name,ID,Value]), - with_kv_maybe_more(O,AR,Key,json(More)). - -with_kv(O,AR,OK,Key=Values):- !, with_kv([OK|O],AR,Key,Values). -with_kv(O,AR,Key,json(Values)):- !, with_kv(O,AR,Key,Values). -with_kv(O,AR,Key,Value):- is_list(Value),Value\==[],!, - maplist(with_kv(O,AR,Key),Value). -with_kv(O,AR,Kee,Value):- - prefix_key(O,Kee,Key), - retractall(json_kv(Key,_)), - KV = json_kv(Key,Value), - decl_seen(Value,Key), - Do =.. [AR,KV], - call(Do), - ignore((AR==assert, - %wdmsg_json(cr(Key)=Value), - check_ready(Key))). - -check_ready(Key):- - forall((extracted_predicate(P,List),memberchk(Key,List)), - (length(List,Len), - ignore((findall(Arg,(member(K,List),json_kv(K,Arg)),ArgList), - length(ArgList,Len), - Fact = [P|ArgList], - assert_JSON(Fact), - maplist(decl_type,ArgList,List))))). -% Rows 937,381,148 -:- dynamic(arg_typed/2). -:- dynamic(seen_arg/2). - -decl_type(Arg,Type):- retractall(seen_arg(Arg,_)),arg_typed(Arg,Type),wdmsg_json(arg_typed(Arg,Type)),!. -decl_type(Arg,Type):- assert(arg_typed(Arg,Type)),!,assert_JSON([Type,Arg]). -decl_seen(Arg,_):- seen_arg(Arg,_),!. -decl_seen(Arg,_):- arg_typed(Arg,_),!. -decl_seen(Arg,Type):- assert(seen_arg(Arg,Type)),!. - - - - -err -:- process_json(json([metaData= json( [ dataProvider='FlyBase', - publications=['PMID:35266522'], schemaVersion='0.4.0',release=fb_2023_04, - genomicCoordinateSystem='1-start, fully-closed', - dateProduced='2023-07-25T03:20:14+00:00']), - data= [ json( [ primaryId='FBtr0070001', - symbol='tRNA:Pro-CGG-1-1-RA', - sequence='GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC', - url='http://flybase.org/reports/FBtr0070001.html', - symbolSynonyms=['CR32826-RA','tRNA:CR32826-RA'], taxonId='NCBITaxon:7227',soTermId='SO:0000253', - genomeLocations= [ json( [ assembly='R6', - gca_accession='GCA_000001215.4', - exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), - startPosition=20025099,endPosition=20025170])]])], - gene= json( [ geneId='FBgn0052826', - symbol='tRNA:Pro-CGG-1-1', - url='http://flybase.org/reports/FBgn0052826.html', - locusTag='Dmel_CR32826', - synonyms=['tRNA:P:CGG:AE002611'], - name='transfer RNA:Proline-CGG 1-1']), - publications=['PMID:26673694']]), - json( [ primaryId='FBtr0070292', - symbol='snoRNA:M-RA', - sequence='AATTCAATGATTTCAACTTATTCTAATACACAC', - url='http://flybase.org/reports/FBtr0070292.html', taxonId='NCBITaxon:7227',soTermId='SO:0000275', - crossReferenceIds=['REFSEQ:NR_002093.1'], - genomeLocations= [ json( [ assembly='R6', - gca_accession='GCA_000001215.4', - exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), - startPosition=1482492,endPosition=1482590])]])], - gene= json( [ geneId='FBgn0044508', - symbol='snoRNA:M', - url='http://flybase.org/reports/FBgn0044508.html', - locusTag='Dmel_CR32807', synonyms=['CR32807'],name='snoRNA:M'])]), - json( [ primaryId='FBtr0308931', - symbol='lncRNA:CR33218-RC', - sequence='ACGAAATCAATAAACATTTGTACCTTT', - url='http://flybase.org/reports/FBtr0308931.html', - symbolSynonyms=['CR33218-RC'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', - crossReferenceIds=['REFSEQ:NR_047742.1'], - genomeLocations= [ json( [ assembly='R6', - gca_accession='GCA_000001215.4', - exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), - startPosition=2330159,endPosition=2330355]), - json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+), - startPosition=2330413,endPosition=2330826])]])], - gene= json( [ geneId='FBgn0053218', - symbol='lncRNA:CR33218', - url='http://flybase.org/reports/FBgn0053218.html', - locusTag='Dmel_CR33218', - synonyms=['CG2854','CG33218','CR33218','CT9762'], - name='long non-coding RNA:CR33218'])]), - json( [ primaryId='FBtr0070634', symbol='lncRNA:roX1-RA',sequence='TTGTAGAACAATTACTATA', - url='http://flybase.org/reports/FBtr0070634.html', - symbolSynonyms=['roX1-RA','roX1-RA....'], taxonId='NCBITaxon:7227',soTermId='SO:0001877', - crossReferenceIds=['REFSEQ:NR_002098.2'], - genomeLocations= [ json( [ assembly='R6', - gca_accession='GCA_000001215.4', - exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-), - startPosition=3858940,endPosition=3862697])]])], - gene= json( [ geneId='FBgn0019661', - symbol='lncRNA:roX1', - url='http://flybase.org/reports/FBgn0019661.html', - locusTag='Dmel_CR32777', - synonyms= [ 'BcDNA:GH10432', 'CR32777','EG:EG0002.2','RoX1', - 'chrX:3706836..3706970',rox1], - name='long non-coding RNA on the X 1']), - publications=['PMID:10445033','PMID:12446910','PMID:9038336','PMID:9038337']])] ])). - - - - -err -:- process_json([],' -{ - "metaData": { - "dataProvider": "FlyBase", - "publications": [ - "PMID:35266522" - ], - "schemaVersion": "0.4.0", - "release": "fb_2023_04", - "genomicCoordinateSystem": "1-start, fully-closed", - "dateProduced": "2023-07-25T03:20:14+00:00" - }, - "data": [ - { - "primaryId": "FBtr0070001", - "symbol": "tRNA:Pro-CGG-1-1-RA", - "sequence": "GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC", - "url": "http://flybase.org/reports/FBtr0070001.html", - "symbolSynonyms": [ - "CR32826-RA", - "tRNA:CR32826-RA" - ], - "taxonId": "NCBITaxon:7227", - "soTermId": "SO:0000253", - "genomeLocations": [ - { - "assembly": "R6", - "gca_accession": "GCA_000001215.4", - "exons": [ - { - "INSDC_accession": "AE014298.5", - "chromosome": "X", - "strand": "+", - "startPosition": 20025099, - "endPosition": 20025170 - } - ] - } - ], - "gene": { - "geneId": "FBgn0052826", - "symbol": "tRNA:Pro-CGG-1-1", - "url": "http://flybase.org/reports/FBgn0052826.html", - "locusTag": "Dmel_CR32826", - "synonyms": [ - - "tRNA:P:CGG:AE002611" - ], - "name": "transfer RNA:Proline-CGG 1-1" - }, - "publications": [ - "PMID:26673694" - ] - }, - { - "primaryId": "FBtr0070292", - "symbol": "snoRNA:M-RA", - "sequence": "AATTCAATGATTTCAACTTATTCTAATACACAC", - "url": "http://flybase.org/reports/FBtr0070292.html", - "taxonId": "NCBITaxon:7227", - "soTermId": "SO:0000275", - "crossReferenceIds": [ - "REFSEQ:NR_002093.1" - ], - "genomeLocations": [ - { - "assembly": "R6", - "gca_accession": "GCA_000001215.4", - "exons": [ - { - "INSDC_accession": "AE014298.5", - "chromosome": "X", - "strand": "-", - "startPosition": 1482492, - "endPosition": 1482590 - } - ] - } - ], - "gene": { - "geneId": "FBgn0044508", - "symbol": "snoRNA:M", - "url": "http://flybase.org/reports/FBgn0044508.html", - "locusTag": "Dmel_CR32807", - "synonyms": [ - "CR32807" - ], - "name": "snoRNA:M" - } - }, - { - "primaryId": "FBtr0308931", - "symbol": "lncRNA:CR33218-RC", - "sequence": "ACGAAATCAATAAACATTTGTACCTTT", - "url": "http://flybase.org/reports/FBtr0308931.html", - "symbolSynonyms": [ - "CR33218-RC" - ], - "taxonId": "NCBITaxon:7227", - "soTermId": "SO:0001877", - "crossReferenceIds": [ - "REFSEQ:NR_047742.1" - ], - "genomeLocations": [ - { - "assembly": "R6", - "gca_accession": "GCA_000001215.4", - "exons": [ - { - "INSDC_accession": "AE014298.5", - "chromosome": "X", - "strand": "+", - "startPosition": 2330159, - "endPosition": 2330355 - }, - { - "INSDC_accession": "AE014298.5", - "chromosome": "X", - "strand": "+", - "startPosition": 2330413, - "endPosition": 2330826 - } - ] - } - ], - "gene": { - "geneId": "FBgn0053218", - "symbol": "lncRNA:CR33218", - "url": "http://flybase.org/reports/FBgn0053218.html", - "locusTag": "Dmel_CR33218", - "synonyms": [ - "CG2854", - "CG33218", - "CR33218", - "CT9762" - ], - "name": "long non-coding RNA:CR33218" - } - }, - { - "primaryId": "FBtr0070634", - "symbol": "lncRNA:roX1-RA", - "sequence": "TTGTAGAACAATTACTATA", - "url": "http://flybase.org/reports/FBtr0070634.html", - "symbolSynonyms": [ - "roX1-RA" - ], - "taxonId": "NCBITaxon:7227", - "soTermId": "SO:0001877", - "crossReferenceIds": [ - "REFSEQ:NR_002098.2" - ], - "genomeLocations": [ - { - "assembly": "R6", - "gca_accession": "GCA_000001215.4", - "exons": [ - { - "INSDC_accession": "AE014298.5", - "chromosome": "X", - "strand": "-", - "startPosition": 3858940, - "endPosition": 3862697 - } - ] - } - ], - "gene": { - "geneId": "FBgn0019661", - "symbol": "lncRNA:roX1", - "url": "http://flybase.org/reports/FBgn0019661.html", - "locusTag": "Dmel_CR32777", - "synonyms": [ - "BcDNA:GH10432", - "CR32777", - "EG:EG0002.2", - "RoX1", - "chrX:3706836..3706970", - "rox1" - ], - "name": "long non-coding RNA on the X 1" - }, - "publications": [ - "PMID:10445033", - "PMID:12446910", - "PMID:9038336", - "PMID:9038337" - ] - } - ] - } -}'). - -err -:- process_json([],' -{ - "metaData": { - "dataProvider": "FlyBase", - "title": "Frequently Used GAL4 Table", - "dateProduced": "2023-07-24T23:20:12-04:00", - "databaseRelease": "2023_04", - "annotationRelease": "R6.53" - }, - "data": [ - - {"driver": { - "name": "Scer\\GAL4dpp.blk1", - "fbid": "FBal0040480", - "images": { - "FBal0040480_1.png": { - "imageDescription": "GAL4[dpp.blk1].png", - "publicationId": "FBrf0218242", - "pubFigure": "Figure 5A", - "permission": "" - } - }, - "pubs": { - "FBrf0074522": "Staehling-Hampton et al., 1994, Cell Growth Diffn 5(6): 585--593", - "FBrf0076140": "Wilder and Perrimon, 1995, Development 121(2): 477--488", - "FBrf0084454": "Treisman and Rubin, 1995, Development 121(11): 3519--3527", - "FBrf0086426": "Grimm and Pflugfelder, 1996, Science 271(5255): 1601--1604", - "FBrf0087557": "Lecuit et al., 1996, Nature 381(6581): 387--393", - "FBrf0087626": "Nellen et al., 1996, Cell 85(3): 357--368", - "FBrf0087630": "Ng et al., 1996, Nature 381(6580): 316--318", - "FBrf0088035": "Burke and Basler, 1996, Development 122(7): 2261--2269", - "FBrf0088295": "Kim et al., 1996, Nature 382(6587): 133--138", - "FBrf0089604": "Brook and Cohen, 1996, Science 273(5280): 1373--1377", - "FBrf0089753": "Morimura et al., 1996, Dev. Biol. 177(1): 136--151", - "FBrf0091093": "Johnston and Schubiger, 1996, Development 122(11): 3519--3529", - "FBrf0091111": "Leevers et al., 1996, EMBO J. 15(23): 6584--6594", - "FBrf0091167": "Shen and Mardon, 1997, Development 124(1): 45--52", - "FBrf0091298": "Gonzalez-Crespo and Morata, 1996, Development 122(12): 3921--3928", - "FBrf0091412": "Theisen et al., 1996, Development 122(12): 3939--3948", - "FBrf0092493": "Chanut and Heberlein, 1997, Development 124(2): 559--567", - "FBrf0092641": "Neumann and Cohen, 1997, Development 124(4): 871--880", - "FBrf0093060": "Aplin and Kaufman, 1997, Mech. Dev. 62(1): 51--60", - "FBrf0251844": "Matsuda et al., 2021, Nat. Commun. 12(1): 6435", - "FBrf0252066": "Kinsey et al., 2021, G3 (Bethesda) 11(12): jkab350", - "FBrf0253453": "Lu et al., 2022, Int. J. Mol. Sci. 23(9): 4543", - "FBrf0253792": "Akiyama et al., 2022, Dev. Biol. 488: 91--103", - "FBrf0255082": "Inoshita et al., 2022, iScience 25(12): 105476", - "FBrf0255366": "Bharti et al., 2023, Proc. Natl. Acad. Sci. U.S.A. 120(2): e2211189119", - "FBrf0256654": "He et al., 2023, Development 150(11): dev201297" - }, - "rex_gene": { - "FBgn0000490": "dpp" - }, - "common_terms": "A/P boundary", - "major_stages": { - "FBdv00005336": "larval stage" - }, - "major_tissues": { - "FBbt00111520": "anterior-posterior compartment boundary of imaginal disc", - "FBbt00001769": "eye disc morphogenetic furrow" - }, - "transposons": { - "FBtp0000365": "P{GAL4-dpp.blk1}" - }, - "expression_desc_text": "Drives expression at the anterior/posterior compartment boundary of imaginal discs, and at the morphogenetic furrow of the eye disc.", - "stocks": { - "FBst0305049": "106380", - "FBst0001553": "1553", - "FBst0067066": "67066", - "FBst0084296": "84296", - "FBst0084316": "84316", - "FBst0084337": "84337", - "FBst0093385": "93385" - } - } - }, - { - "driver": { - "name": "Scer\\GAL4Ir25a.PA", - "fbid": "FBal0249373", - "images": null, - "pubs": { - "FBrf0212725": "Abuin et al., 2011, Neuron 69(1): 44--60", - "FBrf0215822": "Silbering et al., 2011, J. Neurosci. 31(38): 13357--13375", - "FBrf0221182": "Min et al., 2013, Proc. Natl. Acad. Sci. U.S.A. 110(14): E1321--E1329", - "FBrf0230271": "Chen et al., 2015, Nature 527(7579): 516--520", - "FBrf0232388": "Enjin et al., 2016, Curr. Biol. 26(10): 1352--1358", - "FBrf0236232": "Frank et al., 2017, Curr. Biol. 27(15): 2381--2388.e4", - "FBrf0236716": "Chen and Amrein, 2017, Curr. Biol. 27(18): 2741--2750.e4", - "FBrf0236934": "Rist and Thum, 2017, J. Comp. Neurol. 525(18): 3865--3889", - "FBrf0237619": "Lee et al., 2018, Neuron 97(1): 67--74.e4", - "FBrf0237676": "Ahn et al., 2017, eLife 6: e30115", - "FBrf0238151": "Steck et al., 2018, eLife 7: e31625", - "FBrf0240321": "SƔnchez-AlcaƱiz et al., 2018, Nat. Commun. 9(1): 4252", - "FBrf0240352": "Sun et al., 2018, eLife 7: e39249", - "FBrf0241429": "Chai et al., 2019, Nat. Commun. 10(1): 643", - "FBrf0242503": "Lei et al., 2019, Front. Physiol. 10: 556", - "FBrf0246007": "Alpert et al., 2020, Curr. Biol. 30(12): 2275--2288.e5", - "FBrf0247159": "Weaver et al., 2020, G3 (Bethesda) 10(11): 4147--4158", - "FBrf0251811": "Dhakal et al., 2021, Commun. Biol. 4(1): 1281", - "FBrf0253093": "Trisal et al., 2022, J. Neurosci. 42(14): 2930--2941", - "FBrf0253272": "Task et al., 2022, eLife 11: e72599", - "FBrf0255204": "Omelchenko et al., 2022, Front. Mol. Neurosci. 15: 1023492", - "FBrf0256676": "Shrestha et al., 2023, EMBO Rep. 24(6): e56319", - "unattributed": null - }, - "rex_gene": { - "FBgn0031634": "Ir25a" - }, - "common_terms": "anterior cold cell, ACc, bitter sensing GRN,", - "major_stages": { - "FBdv00005336": "larval stage", - "FBdv00005369": "adult stage" - }, - "major_tissues": { - "FBbt00049613": "bitter-sensing neuron", - "FBbt00005923": "hygrosensory neuron", - "FBbt00047485": "calcium-sensing neuron of labellar S-type taste bristle", - "FBbt00048209": "bitter-sensing neuron of the leg", - "FBbt00049720": "non-aristal sensory neuron VP3", - "FBbt00051293": "adult thermosensory neuron", - "FBbt00110990": "adult hygrosensory neuron Ir40a" - }, - "transposons": { - "FBtp0057158": "P{Ir25a-GAL4.A}" - }, - "expression_desc_text": "Drives expression in a subset of bitter-sensing, hygrosensory, and cold-sensing thermosensory neurons in the labellum, legs, arista, sacculus, antenna, labrum, and larval head sensory organs", - "stocks": { - "FBst0041728": "41728" - } - } - } - ] -}'). - - -json1:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/genes/ncRNA_genes_fb_2023_04.json'). -% 51,290,751 inferences, 8.285 CPU in 8.289 seconds (100% CPU, 6190948 Lips) - -json2:- process_json('/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/insertions/fu_gal4_table_fb_2023_04.json'). -% 27,108,104 inferences, 4.454 CPU in 4.456 seconds (100% CPU, 6085908 Lips) - - - - diff --git a/metta_vspace/pyswip_lng/flybase_json.pl b/metta_vspace/pyswip_lng/flybase_json.pl new file mode 120000 index 00000000..6a098608 --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_json.pl @@ -0,0 +1 @@ +../pyswip/flybase_json.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_learn.pl b/metta_vspace/pyswip_lng/flybase_learn.pl deleted file mode 100755 index 8427c681..00000000 --- a/metta_vspace/pyswip_lng/flybase_learn.pl +++ /dev/null @@ -1,2282 +0,0 @@ - -:- - multifile(table_n_type/3), - multifile(load_state/2), - multifile(is_loaded_from_file_count/2), - multifile(fb_pred_nr/2), - multifile(fb_arg_type/1), - multifile(fb_arg_table_n/3), - multifile(fb_arg/1), - multifile(done_reading/1). - - :- discontiguous fb_metta_query/1. - - - - - - - - - -%./KBs/SUMO-OBO/gene-merged-SUMO.kif -% -%FBbt_00051628 - -concept_type(Arg,Type):- - fb_arg(Arg), - fb_arg_table_n(Arg,Fn,N), - table_n_type(Fn,N,Type). - -good_concept(E1):- var(E1),!,table_columns(F1,P1),nth1(N1,P1,E2),(E1=E2;E1=nth(N1,F1)). -good_concept(E1):- symbol(E1),!, is_good_symbol_name(E1). -good_concept(E1):- number(E1),!, E1>300. -good_concept(listOf(E1,_)):- good_concept(E1),symbol(E1). -good_concept(listOf(E1)):- good_concept(E1),symbol(E1). - -%:- abolish(maybe_corisponds/2). -:- dynamic(maybe_corisponds/2). - -is_good_symbol_name(E1):- symbol(E1), symbol_length(E1,L),L>=2, \+ symbol_number(E1,_). - -fb_pred_g(F,A):-fb_pred_nr(F,A), \+ skipped_anotations(F), A>0, A<20. - -mine_corisponds(Concept1,Corispondance):- - fb_arg_table_n(Concept1,Fn1,Nth1),is_good_symbol_name(Concept1), - fb_arg_table_n(Concept1,Fn2,Nth2), - (Fn1+Nth1)@>(Fn2+Nth2), - tables_can_join(Fn1,Fn2), - once((table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), - table_colnum_type(Fn2,Nth2,Type2),nonvar(Type2))), - (maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)) - = Corispondance). - -mine_overlaps:- - retractall(maybe_corisponds(_,_)), - time(once(mine_overlaps1)), - skip(mine_overlaps2). - -fbel:- ensure_loaded('flybase.metta.qlf'). -mine_overlaps1:- - for_all(mine_corisponds(Concept1,How), assert_progress(mine_overlaps1(Concept1),How)). - -mine_overlaps2_slow:- - % for_all(mine_typelevel_overlaps,true), - for_all(mine_symbolspace_overlaps,true). - - - - -mine_typelevel_overlaps:- - for_all(mine_typelevel_overlaps(Concept1,SC1,SC2), - assert_progress(mine_typelevel_overlaps(Concept1),maybe_corisponds(SC1,SC2))). - -tables_can_join(Fn1,Fn2):- Fn1@>Fn2, can_join_using(Fn1),can_join_using(Fn2). - -can_join_using(V):- var(V),!. -can_join_using(fbgn_exons2affy1_overlaps):- !, fail. -can_join_using(fbgn_exons2affy2_overlaps):- !, fail. -can_join_using(_). - -fb_data_template(T1,Data):- - fb_pred_g(T1,Arity), Arity>1,Arity<20,functor(Data,T1,Arity), - current_predicate(T1/Arity). -fb_data(T1,Data):- fb_data_template(T1,Data),call(Data). - -:- multifile(fb_arg_table_n/3). -fb_arg_table_n(Arg,Fn,N):- fb_data(Fn,Data),arg(N,Data,Arg). - -querymaker2(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- - xref_class(CrossType), - table_colnum_type(T1,CN1,CrossType), - table_colnum_type(T2,CN2,CrossType), - T1\==T2, - fb_data_template(T1,Data1), - fb_data_template(T2,Data2), - arg(CN1,Data1,Inst),arg(CN2,Data2,Inst), - once((Data1,Data2,is_good_symbol_name(Inst), - - table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, - table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, - arg(Nth1,Data1,V1), - arg(Nth2,Data2,V2), CN1\==Nth1,CN2\==Nth2)), - sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), - reverse(Sorted,SortedR), - maplist(arg(1),SortedR,Sorted1), - maplist(arg(2),SortedR,Sorted2), - - atomic_list_concat(Sorted1,'-',QPD), - into_hyphens(QPD,QP), - - Self = '&self', - Query = - [match,Self, - [(','), Data1,Data2], - [QP| Sorted2]], - CQuery = - [match,Self, - [(','), _CData1,_CData2], - [QP,CInst, CV1, CV2 ]], - copy_term(Query,CQuery), - atom_concat(Type2,'_2',Type22), - CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), - numbervars(CQuery,0,_,[]), - nl, - format('~n~n;;; ~w~n~n',[QP]), - write_exec(CQuery),nl,nl, - \+ \+ ((once((Data1,Data2)),write_src(Data1), - if_t((Data1\==Data2),(nl, write_src(Data2))))), - nl,nl. - - -querymaker:- - forall(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query), - write_src(querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query))). -querymaker(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- - xref_class(CrossType), - fb_data_template(T1,Data1), - fb_data_template(T2,Data2), - T1\==T2, - table_colnum_type(T1,CN1,CrossType), - table_colnum_type(T2,CN2,CrossType), - table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, - table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, - arg(Nth1,Data1,V1),arg(CN1,Data1,Inst), - arg(Nth2,Data2,V2),arg(CN2,Data2,Inst), - sort([Type1-V1,CrossType-Inst,Type2-V2],Sorted), - reverse(Sorted,SortedR), - maplist(arg(1),SortedR,Sorted1), - maplist(arg(2),SortedR,Sorted2), - atomic_list_concat(Sorted1,'-',QPD), - into_hyphens(QPD,QP), - - Self = '&self', - Query = - [match,Self, - [(','), Data1,Data2], - [QP|Sorted2]], - CQuery = - [match,Self, - [(','), _CData1,_CData2], - [QP,CInst, CV1, CV2 ]], - copy_term(Query,CQuery), - atom_concat(Type2,'_2',Type22), - CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), - numbervars(CQuery,0,_,[]), - nl, - format('~n~n;;; ~w~n~n',[QP]), - write_exec(CQuery),nl,nl, - \+ \+ ((once((Data1,Data2, Inst\=="")),write_src(Data1), - if_t((Data1\==Data2),(nl, write_src(Data2))))), - nl,nl. - -querymaker3(CrossType,Inst,[Type1,V1],[Type2,V2],Query):- - - - call_nth(fb_data(T1,Data1),3), arg(CN1,Data1,Inst), is_good_symbol_name(Inst), - fb_data_template(T2,Data2),T1\==T2, - arg(CN2,Data2,Inst), - once(Data2), - arg(Nth1,Data1,V1), Nth1\==CN1, - arg(Nth2,Data2,V2), Nth2\==CN2, - table_colnum_type(T1,CN1,CrossType), - table_colnum_type(T1,Nth1,Type1),Type1\==CrossType, - table_colnum_type(T2,Nth2,Type2),Type2\==CrossType,Type1\==Type2, - sort([Type1,CrossType,Type2],Sorted), - reverse(Sorted,SortedR), - atomic_list_concat(SortedR,'-',QPD), - into_hyphens(QPD,QP), - - Self = '&self', - Query = - [match,Self, - [(','), Data1,Data2], - [QP,Inst, V1, V2 ]], - - \+ \+ - ((user:once((Data1,Data2)), - - CQuery = - [match,Self, - [(','), _CData1,_CData2], - [QP,CInst, CV1, CV2 ]], - copy_term(Query,CQuery), - atom_concat(Type2,'_2',Type22), - CV1 = '$VAR'(Type1), CV2 = '$VAR'(Type22), CInst = '$VAR'(CrossType), - numbervars(CQuery,0,_,[]), - nl, - format('~n~n;;; ~w~n~n',[QP]), - write_exec(CQuery),nl,nl, - ((write_src(Data1), - if_t((Data1\==Data2),(nl, write_src(Data2))))), - nl,nl)). - -interesting_inst(II):- \+ var(II), \+ number(II), II\=='',II\=="". - -same_values(Inst,T1,K1,CN1,T2,K2,CN2):- - fb_pred_g(T1,Arity1),Arity1>1,Arity1<10, - fb_pred_g(T2,Arity2),Arity2>1,Arity2<10, - functor(Data1,T1,Arity1), - functor(Data2,T2,Arity2), - arg(CN1,Data1,Inst), - arg(CN2,Data2,Inst), - ((T1,CN1)\==(T2,CN2)), - call_nth((Data1,Data2),Nth), - (Nth=2->!;true), - ignore(table_colnum_type(T1,CN1,K1)), - ignore(table_colnum_type(T2,CN2,K2)). - -xref_class(CrossType):- no_repeats(CrossType,rep_xref_class(CrossType)). -fb_class(T):- no_repeats(T,table_colnum_type(_,_,T)). - -fb_inst_class(I,IT):- no_repeats(IIT,(fb_data(T,Data),arg(Nth,Data,I),table_colnum_type(T,Nth,IT),(IIT=I+IT))). -rep_xref_class(CrossType):- table_colnum_type(T1,_,CrossType), table_colnum_type(T2,_,CrossType),T1\==T2. - -mine_typelevel_overlaps(Concept1,'ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/)):- - - %fail, % Skip over simple type named things - - Type1=Concept1,Type2=Concept1, - table_columns(Fn1,Atom1), table_columns(Fn2,Atom2), - fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), - Fn1@>Fn2, nth1(Nth1,Atom1,Concept1), - good_concept(Concept1), - once((nth1(Nth2,Atom2,Concept1),length(Atom1,Arity1),length(Atom2,Arity2))). - -mine_symbolspace_overlaps:- - fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), - once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), - tables_can_join(Fn1,Fn2), - call(Atom1), arg(Nth1,Atom1,Concept1),good_concept(Concept1), arg(Nth2,Atom2,Concept1),call(Atom2))), - once(( - table_colnum_type(Fn1,Nth1,Type1),nonvar(Type1), - table_colnum_type(Fn2,Nth2,Type2),nonvar(Type1))), - assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Type2,Nth2,Fn2/*Arity2*/))). - -mine_unif_overlap:- - forall((fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2), - once((functor(Atom1,Fn1,Arity1),functor(Atom2,Fn2,Arity2), - arg(Nth1,Atom1,Concept1), arg(Nth2,Atom2,Concept1), - call(Atom1),call(Atom2), - interesting_to_unify(Concept1)))), - - assert_progress(Concept1,maybe_corisponds('ConceptMapFn'(Nth1,Fn1/*Arity1*/),'ConceptMapFn'(Nth2,Fn2/*Arity2*/)))). - -interesting_to_unify(Concept1):- string(Concept1),!,symbol_length(Concept1,L),L>3. -interesting_to_unify(Concept1):- good_concept(Concept1). -interesting_to_unify(Number):- number(Number),Number>1000. - - -fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- !, - fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2), - tables_can_join(Fn1,Fn2), - between(1,Arity1,Nth1),Nth1<20,between(1,Arity2,Nth2),Nth2<20, - (Fn1==Fn2-> (Nth1>Nth2); true). - -fb_two_preds(Fn1,Nth1,Arity1,Fn2,Nth2,Arity2):- - fb_pred_g(Fn1,Arity1), fb_pred_g(Fn2,Arity2),Fn1@>Fn2, - mine_typelevel_overlaps(_,'ConceptMapFn'(_Type1,Nth1,Fn1/*Arity1*/),'ConceptMapFn'(_Type2,Nth2,Fn2/*Arity2*/)). - -table_colnum_type(Fn,Nth,Type):- table_n_type(Fn,Nth,TypeC,TypeB),(nonvar(TypeB)->Type=TypeB;Type=TypeC). - -synth_conj(QV,(Atom1),(Atom2)):- - maybe_corisponds('ConceptMapFn'(Type1,Nth1,Fn1),'ConceptMapFn'(Type2,Nth2,Fn2)), - make_symbol(Fn1,Nth1,Atom1,Arg1), - make_symbol(Fn2,Nth2,Atom2,Arg2), - Fn1\=@=Fn2, - skip(Type1),skip(Type2), - Arg1=Arg2,QV=Arg1. - -synth_query(Len,Query):- synth_query(_,Len,Query). - -synth_query(_,1,[Atom]):- !, make_symbol(Atom). -synth_query(QV,N,[Q1,Q2|Query]):- - M is N -1, - synth_conj(QV,Q1,Q2), - (M>1 -> dif(QV,QV2) ; true), - synth_query(QV2,M,[Q2|Query]), - all_dif_functors([Q1,Q2|Query]). - -all_dif_functors(List):- \+ (select(Q1,List,Rest),member(Q2,Rest),functor(Q1,F1,_),functor(Q2,F2,_), F1==F2, \+ (ok_if_dupped(F1))). - -make_symbol(Atom):- fb_pred_g(F,A),functor(Atom,F,A). -make_symbol(Fn,Nth,Atom,Arg):- fb_pred_g(Fn,Arity),functor(Atom,Fn,Arity),arg(Nth,Atom,Arg). - -ok_if_dupped(best_gene_summary). - -try_overlaps:- try_overlaps(5). - -try_overlaps(N):- - synth_query(N,Query), - \+ \+ (call_match(Query), - pp_fb(grounded=Query), - ignore(maybe_english(Query))),nl,nl, - AQ = [','|Query], - pp_fb('!'(match('&flybase',AQ,AQ))),nl,nl,nl. - -no_english(fbrf_pmid_pmcid_doi,_). -no_english(physical_interactions_mitab,8). - -maybe_english(Query):- - extract_concepts(Query,Concepts),!, - ignore((maybe_english(Query,Concepts))),!. - -maybe_english(_Query,Concepts):- select(C,Concepts,Rest),is_englishy(C),member(C2,Rest),is_englishy(C2),!, pp_fb(english=[C,C2]). -maybe_english(_Query,Concepts):- pp_fb(concepts=Concepts), maplist(some_english,Concepts). - -is_englishy(C):- \+ symbol(C), \+ string(C), !, fail. -is_englishy(C):- split_string(C, ". ", " ", [_,_,_|_]). -is_englishy(C):- symbol_contains(C,". "). - -some_english(Term):- - ignore((fb_arg_table_n(C,Fn1,Nth1), \+ no_english(Fn1,Nth1),is_englishy(C), - make_symbol(Fn1,Nth1,Atom,English), - arg(Nth2,Atom,Term),Nth2\==Nth1, - call(Atom),English\=='',!, - pp_fb(Term=English))). - -extract_concepts(Query,Concepts):- - findall(C,(sub_term(C,Query),symbolic(C),good_concept(C)),L), - predsort(longest_first,L,Concepts). - -longest_first(R,A,B):- into_len(A,L1),into_len(B,L2),compare(R,L2,L1). -into_len(A,0):- var(A),!. -into_len(A,L):- \+ string(A), !, sformat(S,"~w",[A]),into_len(S,L). -into_len(A,0+A):- symbol_contains(A," "). -into_len(A,L+A):- symbol_length(A,L1), (L1 == 11 -> L = 0 ; L is - L1). - -assert_progress(Concept,Atom):- Atom=..[OP,A1,A2], A1@>A2,!,AtomSwp=..[OP,A2,A1],!,assert_progress(Concept,AtomSwp). -assert_progress(Concept,Atom):- call(Atom),!,pp_fb(already(Concept)=Atom). -assert_progress(Concept,Atom):- pp_fb(assert_progress(Concept)=Atom),assert(Atom). - - - -pfb:- - setenv('DISPLAY','10.0.0.122:0.0'), - profile(load_flybase_tiny). - -pfb1:- - setenv('DISPLAY','10.0.0.122:0.0'), - profile(load_flybase(100_000)). - -pfb2:- - setenv('DISPLAY','10.0.0.122:0.0'), - profile(load_flybase(1_000_000)). - -pfb3:- - setenv('DISPLAY','10.0.0.122:0.0'), - profile(load_flybase_full). - - -% Convert a function and its arguments into a compound term -into_datum(Fn, [D|DataL], Data):- - (nb_current(pred_va, 'True') -> Data =.. [Fn,D,DataL]; Data =.. [Fn,D|DataL]). - -% Create a new assertion from old data -make_assertion4(Fn, Cols, NewData, OldData):- fail, - OldData=Cols, - NewData =..[Fn|Cols],!. -make_assertion4(Fn, Cols, NewData, OldData):- - into_datum(Fn, Cols, OldData), - OldData =.. [Fn|Args], - % skip(if_t(var(ArgTypes), must_det_ll_r((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), - maybe_fix_args(Fn, Args, NewArgs), - maybe_sample(Fn, NewArgs), - NewData =.. [Fn|NewArgs], !. - -maybe_fix_args( Fn,Args,NewArgs):- do_fix_fast_args( Fn,1,Args,NewArgs),!. -maybe_fix_args( Fn,Args,NewArgs):- should_fix_args, - nb_current(fb_argtypes,ArgTypes), fix_list_args(Fn,ArgTypes,Args,NewArgs),!. -maybe_fix_args(_Fn,Args,Args). - -do_fix_fast_args( Fn,Nth,[A|Args],[New|NewArgs]):- maybe_fix_columns_nth(Fn,Nth,A,New), - Nth2 is Nth+1, !, do_fix_fast_args( Fn,Nth2,Args,NewArgs). -do_fix_fast_args(_,_,A,A). - -maybe_fix_columns_nth(Fn,Nth,A,New):- fix_columns_nth(Fn,Nth), fix_concept(A,New),!. -maybe_fix_columns_nth(_,_,A,A). - - -cleanup_arities:- for_all((fb_pred_nr(F,2),fb_pred_nr(F,N),N>2),retract(fb_pred(F,2))). - - - - -:- discontiguous column_names_ext/2. -:- discontiguous primary_column/2. - -must_det_ll_r((G1,G2)):- !, once(G1),must_det_ll_r(G2). -must_det_ll_r(G):- call(G). - -% Safely executes the given Goal and prints any exception raised. -% Usage: safe(+Goal, +Info). -safe(Goal, Info) :- - % Try to call Goal. If an exception is raised, unify Exception with the exception. - catch(Goal, Exception, - % If an exception is raised, portray the clause (Info :- Goal) - % along with the exception, then rethrow the exception. - (catch_ignore(portray_clause(exception:Exception:(Info:- Goal))), throw(Exception)) - ). -% Safely executes the given Goal and prints any exception raised. -% Usage: safe(+Goal). -safe(Goal) :- safe(Goal,safe/1). - - -skipped_anotations(fbgn_exons2affy1_overlaps). -skipped_anotations(fbgn_exons2affy2_overlaps). -skipped_anotations(gene_rpkm_matrix). -skipped_anotations(dmel_gene_sequence_ontology_annotations). -%kipped_anotations(fbgn_annotation_ID). -skipped_anotations(transposon_sequence_set). - -gc_now:- set_option_value(gc,true), garbage_collect,garbage_collect_atoms,garbage_collect_clauses. - -extreme_debug(_). - -numbervars_w_singles(P):- term_singletons(P, Vars), - numbervars(Vars,260,_,[attvar(bind),singletons(false)]), - numbervars(P,14,_,[attvar(bind),singletons(true)]). - - - -pp_fb(P):- format("~N "), \+ \+ (numbervars_w_singles(P), pp_fb1(P)),flush_output. -pp_fb1(P):- write_src(P),!,nl. -:- if(current_predicate(pp_ilp/1)). -pp_fb1(P):- pp_as(P),!,format("~N"),pp_ilp(P),!. -:- endif. -pp_fb1(P):- pp_as(P),!. -pp_fb1(P):- print(P),!,nl. -pp_fb1(P):- fbdebug1(P),!,nl. - - -fbgn_exons2affy1_overlaps_each(Gene,At):- - fb_pred_nr(fbgn_exons2affy1_overlaps, Arity), - functor(Pred,fbgn_exons2affy1_overlaps, Arity), - arg(1,Pred,Gene), - call(Pred), - arg(N,Pred,At),N>1. - -fbgn_exons2affy1_overlaps_start_end(Gene,Start,End):- - fbgn_exons2affy1_overlaps_each(Gene,At),into_start_end(At,Start,End). - - -into_start_end(s_e(S,E),S,E):- nonvar(S),!. -into_start_end('..'(S,E),S,E):- nonvar(S),!. -into_start_end(at(S,E),S,E):- nonvar(S),!. -into_start_end(At,S,E):- atomic_list_concat([SS,EE],'..',At), - into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). -into_start_end(At,S,E):- atomic_list_concat([SS,EE],'_at_',At), - into_number_or_symbol(SS,S), into_number_or_symbol(EE,E). - - -%into_fb_term(Atom,Term):- compound(Atom),!,Term=Atom. -into_fb_term(Atom,Term):- \+ atom(Atom), \+ string(Atom),!,Term=Atom. -into_fb_term(Atom,'..'(S,E)):- into_start_end(Atom,S,E),!. -into_fb_term(Atom,Term):- into_number_or_symbol(Atom,Term),!. - -fb_member(E,L):- as_list([],L,LL),member(E,LL). - -into_number_or_symbol(Atom,Term):- atomic_list_concat(List,'|',Atom),List\=[_],!,maplist(into_fb_term,List,Term). -%into_number_or_symbol(Atom,Term):- atom_number(Atom, Term),!,Term= Term. -into_number_or_symbol(Atom,Term):- catch(atom_to_term(Atom,Term,Vars),_,fail),maplist(a2t_assign_var,Vars). -into_number_or_symbol(Atom,Term):- Term=Atom. - -a2t_assign_var(N=V):- N=V. - -fbgn_exons2affy2_overlaps_each(Gene,At):- - fb_pred_nr(fbgn_exons2affy2_overlaps, Arity), - functor(Pred,fbgn_exons2affy2_overlaps, Arity), - arg(1,Pred,Gene), - call(Pred), - arg(N,Pred,At),N>1. - -fbgn_exons2affy2_overlaps_start_end(Gene,Start,End):- - fbgn_exons2affy2_overlaps_each(Gene,At),into_start_end(At,Start,End). - -some_xref_ids(Id):- member(Id,['FBgn0001301']). - -findall_flat_set(Arg,Goal,FlatSet):- - findall(Arg,Goal,List),flatten(List,Flat),list_to_set(Flat,FlatSet),!. - -expand_xref(Id,N,SetOfArgs):- - expand_xref_excpt([[]],Id,N,SetOfArgs). - -expand_xref_excpt(_Xcept,Id,_N,SetOfArgs):- compound(Id),!,SetOfArgs=[]. -expand_xref_excpt(Except,Id,N,SetOfArgs):- var(N),!,between(0,5,N),expand_xref_excpt(Except,Id,N,SetOfArgs). -expand_xref_excpt(Except,Id,N,SetOfArgs):- N=<1,!, - findall_flat_set(SoFar,expand_xref_once_except(Except,Id,N,SoFar),SetOfArgs). -expand_xref_excpt(Except,Id,N,SetOfArgs):- Nm1 is N -1, - expand_xref_once_except(Except,Id,1,SetOfArgs1), - findall_flat_set(EArgs,(member(E,SetOfArgs1),expand_xref_excpt([Id|Except],E,Nm1,EArgs)),SetOfArgs). - -gather_args(Except,F,Pred,Args):- findall_flat_set(Arg,gather_args(Except,F,Pred,Arg),Args). -gather_each_args(Except,F,Pred,Ele):- arg(N,Pred,Arg), \+ member(Arg,Except), - (number(Arg)-> Ele = is_nthOf(Arg,F,N) ; Ele = Arg). - -% findall_flat_set([Pred|Args], -% (call(Pred), -% (N=0 -> Args = [] ; gather_args([Id|Except],F,Pred,Args))),SetOfArgs). - - -expand_xref_once_except(Except,Id,P1):- nonvar(P1), \+ is_list(P1), - forall(between(1,6,N), - expand_xref_once_except_each(Except,Id,N,P1)). - -expand_xref_once_except(Except,Id,Set):- - ((between(1,6,N),expand_xref_once_except_each(Except,Id,N,nop),fail) - ->true;Set=Except). - -expand_xref_once_except_each(Except,Id,N,P1):- - fb_pred_nr(F, Arity), - xgc, - \+ member(argNOf(N,F/Arity),Except), \+ member(F/Arity,Except), - Arity>=N, - expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1). - - -expand_xref_once_except_each_fa(Except,F,Arity,Id,N,P1):- - functor(Pred,F, Arity), - arg(N,Pred,Id), - call(Pred), - add_to_except(argNOf(N,F/Arity),Except), - % \+ member(Pred,Except), - % add_to_except(Pred,Except), - call(P1,Pred), - xgc. - -xgc:- - garbage_collect, - garbage_collect_atoms, - garbage_collect_clauses, - sleep(0.033). - -add_to_except(Pred,Except):- arg(2,Except,T), nb_setarg(2,Except,[Pred|T]). - -sx1:- xinfo(_Id). - -xinfo(Id):- var(Id),!,some_xref_ids(Id), xinfo(Id). -xinfo(Id):- Id=='',!. -xinfo(Id):- number(Id),!. -xinfo(Id):- expand_xref_once_except([Id],Id,my_write_src_nl). - -my_write_src_nl(X):-!, write_src_nl(X). -my_write_src_nl(X):- - must_det_ll((X=..[F|L], maplist(fast_column,L,LL),!,write_src_nl([F|LL]))). - -/* - -xinfo(Id, N):- var(Id),!,some_xref_ids(Id), xinfo(Id,N). -xinfo(Id,N):- - expand_xref(Id,N,Args), - maplist(write_src_nl,Args). - - -xinfo(Id):- - expand_xref_once_except( - [argNOf(1,entity_publication/4), - 'obo-is-a'/2, - 'obo-synonym'/4, - 'obo-charge'/2, - fbal_to_fbgn/4, - gene_genetic_interactions/6, - fbgn_gleanr/4],Id,Set), - nop(maplist(write_src_nl,Set)),fail. -xinfo(Id):- - N=1, - forall(member(F/A, - [entity_publication/4, - 'obo-is-a'/2, - 'obo-charge'/2, - gene_genetic_interactions/6, - fbgn_gleanr/4]), - expand_xref_once_except_each_fa([[]],F,A,Id,N,_Pred)). -*/ -:- dynamic fb_tsv_pred_stats/3. - -fb_tsv_pred_stats('num-columns', allele_genetic_interactions, [4]). -fb_tsv_pred_stats('duplicated-rows', allele_genetic_interactions, [21]). -fb_tsv_pred_stats('total-rows', allele_genetic_interactions, [363452]). -fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [1, 28688, object]). -fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [2, 28685, object]). -fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [3, 227000, object]). -fb_tsv_pred_stats('unique-values', allele_genetic_interactions, [4, 8034, object]). -fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [2, '', 19]). -fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [2, 19, [#, ''], [#, 19]]). -fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [3, '', 19]). -fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [3, 19, [#, ''], [#, 19]]). -fb_tsv_pred_stats('null-value-count', allele_genetic_interactions, [4, '', 38]). -fb_tsv_pred_stats('missing-values', allele_genetic_interactions, [4, 38, [#, ''], [#, 38]]). -fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [1, [#, [#, 'Scer\\GAL4[hs.2sev]', 1793], [#, 'Scer\\GAL4[elav.PU]', 1893], [#, 'Scer\\GAL4[Bx-MS1096]', 1990], [#, 'Scer\\GAL4[ey.PH]', 2227], [#, 'Scer\\GAL4[elav-C155]', 2526], [#, 'Scer\\GAL4[GMR.PU]', 9205], [#, 'Scer\\GAL4[GMR.PF]', 14267]]]). -fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [1, [#, [#, 'Su(mg)2-1[2-1]', 1], [#, 'dnt[ap.ME4]', 1], [#, 'Fas2[unspecified]', 1], [#, 'dock[R336Q.UAS]', 1], [#, 'dock[W151K.UAS]', 1], [#, 'dock[W225K.UAS]', 1], [#, 'dock[W48K.UAS]', 1]]]). -fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0042580', 1793], [#, 'FBal0241645', 1893], [#, 'FBal0040476', 1990], [#, 'FBal0093300', 2227], [#, 'FBal0047071', 2526], [#, 'FBal0240667', 9205], [#, 'FBal0244011', 14267]]]). -fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [2, [#, [#, 'FBal0083171', 1], [#, 'FBal0094549', 1], [#, 'FBal0104139', 1], [#, 'FBal0089352', 1], [#, 'FBal0089350', 1], [#, 'FBal0089348', 1], [#, 'FBal0089346', 1]]]). -fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [3, [#, [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has wing phenotype', 8], [#, 'Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has lethal phenotype', 8], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has neoplasia phenotype', 9], [#, 'rho[ve-1], vn[1] has wing vein phenotype', 10], [#, 'Dp[GMR.PD], E2f1[GMR.PD] has eye phenotype', 10], [#, 'Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has eye phenotype', 18]]]). -fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [3, [#, [#, '1038[1038] is an enhancer of visible phenotype of vg[83b27]/vg[1]', 1], [#, 'bas[1] is an enhancer of paralytic phenotype of para[bss1]', 1], [#, 'baz[4] has abnormal cell polarity phenotype, enhanceable by Dhc64C[6-6]/Dhc64C[6-8]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has abnormal neuroanatomy phenotype, non-suppressible by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-enhanceable by aPKC[Exc55]', 1], [#, 'baz[4] has bouton phenotype, non-suppressible by aPKC[Exc55]', 1]]]). -fb_tsv_pred_stats('most-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0179402', 1369], [#, 'FBrf0237532', 1506], [#, 'FBrf0147055', 1723], [#, 'FBrf0246190', 1852], [#, 'FBrf0190765', 1868], [#, 'FBrf0199094', 1940], [#, 'FBrf0187664', 2514]]]). -fb_tsv_pred_stats('less-frequent', allele_genetic_interactions, [4, [#, [#, 'FBrf0158937', 1], [#, 'FBrf0159209', 1], [#, 'FBrf0192307', 1], [#, 'FBrf0226217', 1], [#, 'FBrf0160985', 1], [#, 'FBrf0134563', 1], [#, 'FBrf0235180', 1]]]). -fb_tsv_pred_stats('num-columns', fbal_to_fbgn, [4]). -fb_tsv_pred_stats('duplicated-rows', fbal_to_fbgn, [0]). -fb_tsv_pred_stats('total-rows', fbal_to_fbgn, [288468]). -fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [1, 288468, object]). -fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [2, 288454, object]). -fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [3, 33136, object]). -fb_tsv_pred_stats('unique-values', fbal_to_fbgn, [4, 33136, object]). -fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [3, '', 58]). -fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [3, 58, [#, ''], [#, 58]]). -fb_tsv_pred_stats('null-value-count', fbal_to_fbgn, [4, '', 58]). -fb_tsv_pred_stats('missing-values', fbal_to_fbgn, [4, 58, [#, ''], [#, 58]]). -fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [2, [#, [#, 'abd-A[HCJ32', 2], [#, 'Ecol\\lacZ[HCJ32', 2], [#, 'Ecol\\lacZ[Dora-PL29', 2], [#, 'abd-A[HC184B-HCJ32', 2], [#, 'Mhc[', 2], [#, 'y[2', 3], [#, 'y[1', 5]]]). -fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [2, [#, [#, 'Xrp1[142]', 1], [#, 'Apc2[45]', 1], [#, 'Apc2[5-3]', 1], [#, 'Apc2[Delta20rep.Tag:HA]', 1], [#, 'TBC1d7[Apc2-79]', 1], [#, 'mRpS24[Apc2-79]', 1], [#, 'mRpS24[+t3.78]', 1]]]). -fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0004034', 989], [#, 'FBgn0003996', 1474], [#, 'FBgn0015250', 2466], [#, 'FBgn0262639', 3340], [#, 'FBgn0014446', 4731], [#, 'FBgn0014447', 12710], [#, 'FBgn0014445', 30381]]]). -fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [3, [#, [#, 'FBgn0267024', 1], [#, 'FBgn0044109', 1], [#, 'FBgn0018700', 1], [#, 'FBgn0014164', 1], [#, 'FBgn0003537', 1], [#, 'FBgn0002275', 1], [#, 'FBgn0001163', 1]]]). -fb_tsv_pred_stats('most-frequent', fbal_to_fbgn, [4, [#, [#, y, 989], [#, w, 1474], [#, 'Ecol\\lexA', 2466], [#, 'Hsap\\RELA', 3340], [#, 'Avic\\GFP', 4731], [#, 'Ecol\\lacZ', 12710], [#, 'Scer\\GAL4', 30381]]]). -fb_tsv_pred_stats('less-frequent', fbal_to_fbgn, [4, [#, [#, 'asRNA:CR45468', 1], [#, 'E(rst)C383', 1], [#, 'Dpau\\v', 1], [#, fez, 1], [#, 'Stp-1', 1], [#, 'l(3)70Ac', 1], [#, 'GustR', 1]]]). -fb_tsv_pred_stats('num-columns', genotype_phenotype_data, [7]). -fb_tsv_pred_stats('duplicated-rows', genotype_phenotype_data, [1032]). -fb_tsv_pred_stats('total-rows', genotype_phenotype_data, [384206]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [1, 155953, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [2, 155919, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [3, 3603, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [4, 3608, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [5, 1340, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [6, 1348, object]). -fb_tsv_pred_stats('unique-values', genotype_phenotype_data, [7, 19007, object]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [2, '', 321]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [2, 321, [#, ''], [#, 321]]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [3, '', 321]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [3, 321, [#, ''], [#, 321]]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [4, '', 321]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [4, 321, [#, ''], [#, 321]]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [5, '', 242201]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [5, 242201, [#, ''], [#, 242201]]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [6, '', 242201]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [6, 242201, [#, ''], [#, 242201]]). -fb_tsv_pred_stats('null-value-count', genotype_phenotype_data, [7, '', 321]). -fb_tsv_pred_stats('missing-values', genotype_phenotype_data, [7, 321, [#, ''], [#, 321]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [1, [#, [#, 'hid[GMR.PG]', 177], [#, 'numb[1]', 190], [#, 'wg[l-17]', 198], [#, 'N[l1N-ts1]', 238], [#, 'y[1', 242], [#, 'N[55e11]', 261], [#, 'Pink1[B9]', 316]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [1, [#, [#, 'Scer\\GAL4[elav.PLu] y[GD1564] Dcr-2[UAS.cDa]', 1], [#, 'Scer\\GAL4[nub-AC-62] Slu7[HMC04054]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b6[HMS02566]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b5[HMS00097]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3b1[HMS00055]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a2[HMC03799]', 1], [#, 'Scer\\GAL4[nub-AC-62] Sf3a1[HMS00157]', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0265023', 177], [#, 'FBal0013186', 190], [#, 'FBal0018509', 198], [#, 'FBal0012887', 238], [#, 'FBal0012701', 261], [#, 'FBal0193144', 316]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [2, [#, [#, 'FBal0244778', 1], [#, 'FBal0058766 FBal0150204', 1], [#, 'FBal0058766 FBal0150205', 1], [#, 'FBal0147425 FBal0241645 FBal0299692', 1], [#, 'FBal0058766 FBal0215661', 1], [#, 'FBal0147425 FBal0241645 FBal0290792', 1], [#, 'FBal0058766 FBal0277700', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [3, [#, [#, 'lethal - all die during embryonic stage', 5395], [#, eye, 8272], [#, 'abnormal neuroanatomy', 9153], [#, wing, 10701], [#, visible, 24435], [#, lethal, 35360], [#, viable, 47447]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [3, [#, [#, 'rough endoplasmic reticulum membrane', 1], [#, 'muscle cell of basalar muscle 49', 1], [#, 'gonadal sheath', 1], [#, 'visceral muscle cell', 1], [#, 'A1-7 ventral acute muscle cell', 1], [#, 'pupal s-LNv neuron', 1], [#, 'larval s-LNv neuron', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [4, [#, [#, 'FBcv0002033', 5395], [#, 'FBbt00004508', 8272], [#, 'FBcv0000435', 9153], [#, 'FBbt00004729', 10701], [#, 'FBcv0000354', 24435], [#, 'FBcv0000351', 35360], [#, 'FBcv0000349', 47447]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [4, [#, [#, 'FBbt00001314', 1], [#, 'FBbt00110023', 1], [#, 'FBbt00110022', 1], [#, 'FBbt00002511', 1], [#, 'FBbt00067044', 1], [#, 'FBbt00067062', 1], [#, 'FBbt00017021', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [5, [#, [#, 'embryonic stage', 4459], [#, 'somatic clone', 8931], [#, 'larval stage', 9821], [#, 'third instar larval stage', 9888], [#, 'adult stage', 16290], [#, recessive, 40476]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [5, [#, [#, 'germline clone|embryonic stage 13', 1], [#, 'somatic clone - tissue specific|decreased number', 1], [#, 'oogenesis|decreased number|germline clone', 1], [#, 'germline clone|decreased number', 1], [#, 'recessive|first instar larval stage|maternal effect', 1], [#, 'maternal effect|second instar larval stage|recessive', 1], [#, 'larval stage|somatic clone|cell autonomous|decreased number', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [6, [#, [#, 'FBdv00005289', 4459], [#, 'FBcv0000336', 8931], [#, 'FBdv00005336', 9821], [#, 'FBdv00005339', 9888], [#, 'FBdv00005369', 16290], [#, 'FBcv0000298', 40476]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [6, [#, [#, 'FBcv0000732', 1], [#, 'FBcv0000333|FBdv00005369|FBcv0000793', 1], [#, 'FBcv0000153|FBcv0000068', 1], [#, 'FBcv0000058|FBcv0000061', 1], [#, 'FBcv0000336|FBdv00005339|FBcv0000061', 1], [#, 'FBcv0007050|FBdv00007001|FBcv0000068', 1], [#, 'FBcv0007048|FBdv00005338', 1]]]). -fb_tsv_pred_stats('most-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0132177', 2452], [#, 'FBrf0179797', 2682], [#, 'FBrf0210524', 7345], [#, 'FBrf0212295', 11407], [#, 'FBrf0210226', 11838], [#, unattributed, 15059], [#, 'FBrf0214518', 19955]]]). -fb_tsv_pred_stats('less-frequent', genotype_phenotype_data, [7, [#, [#, 'FBrf0189827', 1], [#, 'FBrf0179942', 1], [#, 'FBrf0206908', 1], [#, 'FBrf0183397', 1], [#, 'FBrf0023153', 1], [#, 'FBrf0221688', 1], [#, 'FBrf0237982', 1]]]). -fb_tsv_pred_stats('num-columns', cDNA_clone_data, [6]). -fb_tsv_pred_stats('duplicated-rows', cDNA_clone_data, [0]). -fb_tsv_pred_stats('total-rows', cDNA_clone_data, [722570]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [1, 722570, object]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [2, 4, object]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [3, 722570, object]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [4, 50, object]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [5, 22711, object]). -fb_tsv_pred_stats('unique-values', cDNA_clone_data, [6, 696400, object]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [3, unknown, 1]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [3, 1, [#, unknown], [#, 1]]). -fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [4, '', 354]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [4, 354, [#, ''], [#, 354]]). -fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [5, '', 696444]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [5, 696444, [#, ''], [#, 696444]]). -fb_tsv_pred_stats('null-value-count', cDNA_clone_data, [6, '', 26168]). -fb_tsv_pred_stats('missing-values', cDNA_clone_data, [6, 26168, [#, ''], [#, 26168]]). -fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). -fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [2, [#, [#, 'Dsim', 239], [#, 'Dyak', 426], [#, 'Dpse', 13648], [#, 'Dmel', 708257]]]). -fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [4, [#, [#, 'SD_cDNA', 18885], [#, 'GH_cDNA', 20768], [#, 'AT_cDNA', 22564], [#, 'RH_cDNA', 52475], [#, 'RE_cDNA', 58036], [#, 'EK_EP_cDNA', 161904], [#, 'RP_cDNA', 220083]]]). -fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [4, [#, [#, 'TB_cDNA', 3], [#, 'TA_cDNA', 36], [#, 'DE-ORESTES_cDNA', 61], [#, 'CB_cDNA', 61], [#, 'AM_cDNA', 84], [#, 'ST_cDNA', 85], [#, 'RT_pCR8_cDNA', 156]]]). -fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [5, [#, [#, 'AY069671', 2], [#, 'AY051957', 2], [#, 'AY061414', 2], [#, 'AY069707', 2], [#, 'AY051914', 2], [#, 'AY231748', 3]]]). -fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [5, [#, [#, 'BT150453', 1], [#, 'BT050556', 1], [#, 'BT010219', 1], [#, 'BT125004', 1], [#, 'BT006005', 1], [#, 'BT099857', 1], [#, 'BT100119', 1]]]). -fb_tsv_pred_stats('most-frequent', cDNA_clone_data, [6, [#, [#, 'GH897620', 1], [#, 'GH934971', 1], [#, 'CA807794', 1], [#, 'AI256966', 2], [#, 'BI636404', 2], [#, 'BI633401', 2]]]). -fb_tsv_pred_stats('less-frequent', cDNA_clone_data, [6, [#, [#, 'CA807794', 1], [#, 'GH872553', 1], [#, 'GH881842', 1], [#, 'GH911192', 1], [#, 'GH817175', 1], [#, 'GH899993', 1], [#, 'GH918491', 1]]]). -fb_tsv_pred_stats('num-columns', genomic_clone_data, [4]). -fb_tsv_pred_stats('duplicated-rows', genomic_clone_data, [0]). -fb_tsv_pred_stats('total-rows', genomic_clone_data, [50400]). -fb_tsv_pred_stats('unique-values', genomic_clone_data, [1, 50400, object]). -fb_tsv_pred_stats('unique-values', genomic_clone_data, [2, 1, object]). -fb_tsv_pred_stats('unique-values', genomic_clone_data, [3, 50400, object]). -fb_tsv_pred_stats('unique-values', genomic_clone_data, [4, 970, object]). -fb_tsv_pred_stats('missing-values', genomic_clone_data, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', genomic_clone_data, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', genomic_clone_data, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', genomic_clone_data, [4, '', 49428]). -fb_tsv_pred_stats('missing-values', genomic_clone_data, [4, 49428, [#, ''], [#, 49428]]). -fb_tsv_pred_stats('most-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). -fb_tsv_pred_stats('less-frequent', genomic_clone_data, [2, [#, [#, 'Dmel', 50400]]]). -fb_tsv_pred_stats('most-frequent', genomic_clone_data, [4, [#, [#, 'AC104703', 1], [#, 'AC010031', 1], [#, 'AC069405', 1], [#, 'AC011662', 2], [#, 'AC098575', 2], [#, 'AC009888', 2]]]). -fb_tsv_pred_stats('less-frequent', genomic_clone_data, [4, [#, [#, 'AC105774', 1], [#, 'AC091226', 1], [#, 'AC069405', 1], [#, 'AC154046', 1], [#, 'AC010031', 1], [#, 'AC104703', 1], [#, 'AC010573', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_uniprot, [4]). -fb_tsv_pred_stats('duplicated-rows', fbgn_uniprot, [0]). -fb_tsv_pred_stats('total-rows', fbgn_uniprot, [32529]). -fb_tsv_pred_stats('unique-values', fbgn_uniprot, [1, 17130, object]). -fb_tsv_pred_stats('unique-values', fbgn_uniprot, [2, 17130, object]). -fb_tsv_pred_stats('unique-values', fbgn_uniprot, [3, 13964, object]). -fb_tsv_pred_stats('unique-values', fbgn_uniprot, [4, 32341, object]). -fb_tsv_pred_stats('missing-values', fbgn_uniprot, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_uniprot, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_uniprot, [3, '', 4918]). -fb_tsv_pred_stats('missing-values', fbgn_uniprot, [3, 4918, [#, ''], [#, 4918]]). -fb_tsv_pred_stats('missing-values', fbgn_uniprot, [4, 0, [], []]). -fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0265045', 40], [#, 'FBgn0013885', 49], [#, 'FBgn0002022', 50], [#, 'FBgn0285944', 56], [#, 'FBgn0033159', 79], [#, 'FBgn0082496', 101], [#, 'FBgn0003731', 267]]]). -fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0040211', 1], [#, 'FBgn0040235', 1], [#, 'FBgn0040239', 1], [#, 'FBgn0040250', 1], [#, 'FBgn0040251', 1], [#, 'FBgn0040252', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [2, [#, [#, 'Strn-Mlck', 40], [#, 'Dsub\\Acph-1', 49], [#, 'Catsup', 50], [#, para, 56], [#, 'Dscam1', 79], [#, 'Dpmo\\bi', 101], [#, 'Egfr', 267]]]). -fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [2, [#, [#, a, 1], [#, hgo, 1], [#, 'c12.1', 1], [#, bc10, 1], [#, 'Ugt304A1', 1], [#, 'Ugt302K1', 1], [#, 'Ugt303A1', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [3, [#, [#, 'CG33950', 32], [#, 'CG44162', 40], [#, 'CG10449', 50], [#, 'CG9907', 56], [#, 'CG17800', 79], [#, 'CG10079', 267]]]). -fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [3, [#, [#, 'CG6741', 1], [#, 'CG9913', 1], [#, 'CG3172', 1], [#, 'CG14356', 1], [#, 'CG14355', 1], [#, 'CG9722', 1], [#, 'CG9649', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_uniprot, [4, [#, [#, 'Q7KV12', 5], [#, 'Q5F4J7', 6], [#, 'P02255', 18], [#, 'P84051', 18], [#, 'P02299', 24], [#, 'P02283', 24], [#, 'P84040', 24]]]). -fb_tsv_pred_stats('less-frequent', fbgn_uniprot, [4, [#, [#, 'A0A0B4LG21', 1], [#, 'Q9GST6', 1], [#, 'Q9GST1', 1], [#, 'Q9GN59', 1], [#, 'Q9GNH0', 1], [#, 'Q9GPD9', 1], [#, 'Q9GNH4', 1]]]). -fb_tsv_pred_stats('num-columns', gp_informatio, [2]). -fb_tsv_pred_stats('duplicated-rows', gp_informatio, [8413]). -fb_tsv_pred_stats('total-rows', gp_informatio, [11695]). -fb_tsv_pred_stats('unique-values', gp_informatio, [1, 1885, object]). -fb_tsv_pred_stats('unique-values', gp_informatio, [2, 1851, object]). -fb_tsv_pred_stats('missing-values', gp_informatio, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gp_informatio, [2, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gp_informatio, [1, [#, [#, at, 24], [#, kinase, 35], [#, factor, 47], [#, of, 60], [#, 'P450', 82], [#, receptor, 203], [#, protein, 334]]]). -fb_tsv_pred_stats('less-frequent', gp_informatio, [1, [#, [#, '07/24/2023', 1], [#, 'receptor\\CG30106\\protein\\taxon:7227\\\\UniProtKB:A1ZAX0\\', 1], [#, '1b\\CG6446\\protein\\taxon:7227\\\\UniProtKB:O44253|UniProtKB:Q7KK54\\', 1], [#, '55B\\CG5765\\protein\\taxon:7227\\\\UniProtKB:Q8SXS5|UniProtKB:A1ZB24\\', 1], [#, 'K[+]', 1], [#, shock, 1], [#, 'MCU', 1]]]). -fb_tsv_pred_stats('most-frequent', gp_informatio, [2, [#, [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, 'regulator\\CG17680\\protein\\taxon:7227\\\\UniProtKB:Q7JX57\\', 1], [#, 'channel\\CG5076\\protein\\taxon:7227\\\\UniProtKB:Q23974|UniProtKB:A1ZB14|UniProtKB:A0A0B4LGW2\\', 1], [#, _, 1]]]). -fb_tsv_pred_stats('less-frequent', gp_informatio, [2, [#, [#, _, 1], [#, '1\\CG15066\\protein\\taxon:7227\\\\UniProtKB:Q9V8F5\\', 1], [#, '2\\CG15067\\protein\\taxon:7227\\\\UniProtKB:Q8SYA7|UniProtKB:A1ZB61\\', 1], [#, '6\\CG15068\\protein\\taxon:7227\\\\UniProtKB:A1ZB64\\', 1], [#, '1\\CG17725\\protein\\taxon:7227\\\\UniProtKB:P20007\\', 1], [#, '2\\CG10924\\protein\\taxon:7227\\\\UniProtKB:Q7JXB5|UniProtKB:A8DYI3\\', 1], [#, '1\\CG5170\\protein\\taxon:7227\\\\UniProtKB:Q7KN84|UniProtKB:Q95T04|UniProtKB:Q9U982|UniProtKB:Q7KN75\\', 1]]]). -fb_tsv_pred_stats('num-columns', pmid_fbgn_uniprot, [5]). -fb_tsv_pred_stats('duplicated-rows', pmid_fbgn_uniprot, [0]). -fb_tsv_pred_stats('total-rows', pmid_fbgn_uniprot, [2262948]). -fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [1, 57873, object]). -fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [2, 57872, int64]). -fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [3, 146121, object]). -fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [4, 2, object]). -fb_tsv_pred_stats('unique-values', pmid_fbgn_uniprot, [5, 184918, object]). -fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', pmid_fbgn_uniprot, [5, 0, [], []]). -fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0244508', 11253], [#, 'FBrf0229340', 12087], [#, 'FBrf0210524', 14897], [#, 'FBrf0212295', 20997], [#, 'FBrf0210226', 21057], [#, 'FBrf0219727', 27601], [#, 'FBrf0200326', 154679]]]). -fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [1, [#, [#, 'FBrf0207593', 1], [#, 'FBrf0073396', 1], [#, 'FBrf0216372', 1], [#, 'FBrf0050713', 1], [#, 'FBrf0215265', 1], [#, 'FBrf0228014', 1], [#, 'FBrf0084265', 1]]]). -fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [2, [#, [#, 31722958, 11253], [#, 25312911, 12087], [#, 20371351, 14897], [#, 21074052, 20997], [#, 20220848, 21057], [#, 23071443, 27601], [#, 17994087, 154679]]]). -fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [2, [#, [#, 19226322, 1], [#, 21035367, 1], [#, 3938362, 1], [#, 7641726, 1], [#, 31992709, 1], [#, 2504633, 1], [#, 7924995, 1]]]). -fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0003371', 11920], [#, 'FBgn0001624', 12980], [#, 'FBgn0264255', 17080], [#, 'FBgn0004647', 18088], [#, 'FBgn0033159', 22357], [#, 'FBgn0285944', 22904], [#, 'FBgn0003731', 395427]]]). -fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [3, [#, [#, 'FBgn0182483', 1], [#, 'FBgn0152605', 1], [#, 'FBgn0102225', 1], [#, 'FBgn0191710', 1], [#, 'FBgn0186768', 1], [#, 'FBgn0138504', 1], [#, 'FBgn0147962', 1]]]). -fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). -fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [4, [#, [#, 'UniProt/Swiss-Prot', 394838], [#, 'UniProt/TrEMBL', 1868110]]]). -fb_tsv_pred_stats('most-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'Q7YSQ1', 2584], [#, 'Q7Z1J1', 2584], [#, 'Q7YSR5', 2584], [#, 'Q7YSU6', 2584], [#, 'M9NE67', 2584], [#, 'P10090', 3804], [#, 'P09615', 4838]]]). -fb_tsv_pred_stats('less-frequent', pmid_fbgn_uniprot, [5, [#, [#, 'B4QI97', 1], [#, 'B4IFF0', 1], [#, 'B3MJC2', 1], [#, 'B4NVB3', 1], [#, 'A0A0Q9WJA5', 1], [#, 'B4H241', 1], [#, 'B3NEU8', 1]]]). -fb_tsv_pred_stats('num-columns', automated_gene_summaries, [2]). -fb_tsv_pred_stats('duplicated-rows', automated_gene_summaries, [0]). -fb_tsv_pred_stats('total-rows', automated_gene_summaries, [237237]). -fb_tsv_pred_stats('unique-values', automated_gene_summaries, [1, 237237, object]). -fb_tsv_pred_stats('unique-values', automated_gene_summaries, [2, 237237, object]). -fb_tsv_pred_stats('missing-values', automated_gene_summaries, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', automated_gene_summaries, [2, 0, [], []]). -fb_tsv_pred_stats('num-columns', best_gene_summary, [4]). -fb_tsv_pred_stats('duplicated-rows', best_gene_summary, [0]). -fb_tsv_pred_stats('total-rows', best_gene_summary, [32142]). -fb_tsv_pred_stats('unique-values', best_gene_summary, [1, 32142, object]). -fb_tsv_pred_stats('unique-values', best_gene_summary, [2, 32142, object]). -fb_tsv_pred_stats('unique-values', best_gene_summary, [3, 5, object]). -fb_tsv_pred_stats('unique-values', best_gene_summary, [4, 29750, object]). -fb_tsv_pred_stats('missing-values', best_gene_summary, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', best_gene_summary, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', best_gene_summary, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', best_gene_summary, [4, '', 21]). -fb_tsv_pred_stats('missing-values', best_gene_summary, [4, 21, [#, ''], [#, 21]]). -fb_tsv_pred_stats('most-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). -fb_tsv_pred_stats('less-frequent', best_gene_summary, [3, [#, [#, 'Interactive Fly', 64], [#, 'UniProtKB', 1737], [#, 'FlyBase Gene Snapshot', 3655], [#, 'Alliance', 8284], [#, 'FlyBase Auto Summary', 18402]]]). -fb_tsv_pred_stats('most-frequent', best_gene_summary, [4, [#, [#, 'Predicted to enable chitin binding activity. Predicted to be located in extracellular region.', 48], [#, 'Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis.', 56], [#, 'Is expressed in spermatozoon.', 63], [#, 'Predicted to be involved in RNA processing. Predicted to be located in nucleolus.', 72], [#, 'Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome.', 96], [#, 'Is expressed in organism.', 107], [#, 'Is expressed in adult head.', 114]]]). -fb_tsv_pred_stats('less-frequent', best_gene_summary, [4, [#, [#, 'The gene lethal (1) 291-68 is referred to in FlyBase by the symbol Dmel\\l(1)291-68 (FBgn0011177). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: lethal.', 1], [#, 'The gene E(csw)3B is referred to in FlyBase by the symbol Dmel\\E(csw)3B (FBgn0041256). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is described by: . The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene E3 is referred to in FlyBase by the symbol Dmel\\E3 (FBgn0041255). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene H23-14 is referred to in FlyBase by the symbol Dmel\\H23-14 (FBgn0041211). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: auxotroph.', 1], [#, 'The gene Lipocalin is referred to in FlyBase by the symbol Dmel\\Lipocalin (FBgn0041202). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene prolyl-4-hydroxylase-a related protein is referred to in FlyBase by the symbol Dmel\\PH4\\03b1-RP (FBgn0041197). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1], [#, 'The gene SSP6107 is referred to in FlyBase by the symbol Dmel\\SSP6107 (FBgn0041189). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.', 1]]]). -fb_tsv_pred_stats('num-columns', 'Dmel_enzyme_data', [11]). -fb_tsv_pred_stats('duplicated-rows', 'Dmel_enzyme_data', [0]). -fb_tsv_pred_stats('total-rows', 'Dmel_enzyme_data', [3969]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [1, 572, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [2, 572, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [3, 441, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [4, 441, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [5, 281, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [6, 182, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [7, 3736, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [8, 3736, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [9, 2454, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [10, 860, object]). -fb_tsv_pred_stats('unique-values', 'Dmel_enzyme_data', [11, 860, object]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [4, 0, [], []]). -fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [5, '', 1642]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [5, 1642, [#, ''], [#, 1642]]). -fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [6, '', 2724]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [6, 2724, [#, ''], [#, 2724]]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [8, 0, [], []]). -fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [9, '', 1328]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [9, 1328, [#, ''], [#, 1328]]). -fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [10, '', 1609]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [10, 1609, [#, ''], [#, 1609]]). -fb_tsv_pred_stats('null-value-count', 'Dmel_enzyme_data', [11, '', 1609]). -fb_tsv_pred_stats('missing-values', 'Dmel_enzyme_data', [11, 1609, [#, ''], [#, 1609]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001478', 36], [#, 'FBgg0001695', 36], [#, 'FBgg0001207', 45], [#, 'FBgg0001618', 51], [#, 'FBgg0001079', 61], [#, 'FBgg0000128', 98], [#, 'FBgg0001078', 114]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [1, [#, [#, 'FBgg0001510', 1], [#, 'FBgg0001617', 1], [#, 'FBgg0001419', 1], [#, 'FBgg0001420', 1], [#, 'FBgg0001622', 1], [#, 'FBgg0001246', 1], [#, 'FBgg0000869', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'UNCLASSIFIED RNA ENDONUCLEASES', 36], [#, 'CYTOCHROME P450 - CYP3 CLAN', 36], [#, 'UNCLASSIFIED NON-AMINOACYL ACYLTRANSFERASES', 45], [#, 'ECDYSTEROID KINASE-LIKE', 51], [#, 'S1A SERINE PROTEASES - CHYMOTRYPSIN-LIKE', 61], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [2, [#, [#, 'TRANSGLUTAMINASES', 1], [#, 'BETA-ALANYL-DOPAMINE/HISTAMINE HYDROLASES', 1], [#, 'SITE 2 PEPTIDASES', 1], [#, 'M76 METALLOENDOPEPTIDASES', 1], [#, 'EYA FAMILY PROTEIN TYROSINE PHOSPHATASES', 1], [#, 'DEOXYCYTIDYLTRANSFERASES', 1], [#, 'OXO-ACID-LYASES', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0004806', 55], [#, 'GO:0003724', 59], [#, 'GO:0004674', 90], [#, 'GO:0004497', 93], [#, 'GO:0003924', 146], [#, 'GO:0061630', 150], [#, 'GO:0004252', 205]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [3, [#, [#, 'GO:0071566', 1], [#, 'GO:0003810', 1], [#, 'GO:0003923', 1], [#, 'GO:0016642', 1], [#, 'GO:0061863', 1], [#, 'GO:0008970', 1], [#, 'GO:0016872', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'triglyceride lipase activity', 55], [#, 'RNA helicase activity', 59], [#, 'protein serine/threonine kinase activity', 90], [#, 'monooxygenase activity', 93], [#, 'GTPase activity', 146], [#, 'ubiquitin protein ligase activity', 150], [#, 'serine-type endopeptidase activity', 205]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [4, [#, [#, 'UFM1 activating enzyme activity', 1], [#, 'protein-glutamine gamma-glutamyltransferase activity', 1], [#, 'GPI-anchor transamidase activity', 1], [#, 'oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor', 1], [#, 'microtubule plus end polymerase', 1], [#, 'phospholipase A1 activity', 1], [#, 'intramolecular lyase activity', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [5, [#, [#, '3.1.3.16', 47], [#, '3.4.24.-', 47], [#, '3.1.1.3', 55], [#, '3.6.4.13', 59], [#, '2.7.11.1', 90], [#, '3.4.21.-', 209]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [5, [#, [#, '1.16.1.-', 1], [#, '3.4.19.5', 1], [#, '3.2.1.130', 1], [#, '3.5.1.89', 1], [#, '4.3.1.-|4.3.-.-', 1], [#, '7.2.2.9', 1], [#, '4.1.99.22', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ubiquitinyl hydrolase 1', 36], [#, 'glutathione transferase', 38], [#, 'protein-serine/threonine phosphatase', 47], [#, 'triacylglycerol lipase', 55], [#, 'RNA helicase', 59], [#, 'non-specific serine/threonine protein kinase', 90]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [6, [#, [#, 'ribonuclease T2', 1], [#, 'tripeptidyl-peptidase I|tripeptidyl-peptidase II', 1], [#, 'phospholipase A1', 1], [#, 'deoxyribonuclease II', 1], [#, 'N-acetylglucosamine-6-phosphate deacetylase', 1], [#, 'molybdopterin molybdotransferase', 1], [#, 'protoporphyrin ferrochelatase', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0028916', 3], [#, 'FBgn0002905', 3], [#, 'FBgn0030731', 3], [#, 'FBgn0011768', 3], [#, 'FBgn0034246', 3], [#, 'FBgn0263831', 4], [#, 'FBgn0010355', 4]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0043576', 1], [#, 'FBgn0043577', 1], [#, 'FBgn0043578', 1], [#, 'FBgn0029689', 1], [#, 'FBgn0037759', 1], [#, 'FBgn0027538', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'CG33090', 3], [#, 'PolQ', 3], [#, 'Mfe2', 3], [#, 'Fdh', 3], [#, 'Dcr-2', 3], [#, 'Gen', 4], [#, 'Taf1', 4]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [8, [#, [#, 'ari-2', 1], [#, 'PGRP-SC1a', 1], [#, 'PGRP-SB2', 1], [#, 'PGRP-SB1', 1], [#, 'CG6428', 1], [#, 'CG8526', 1], [#, beta4GalNAcTA, 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [9, [#, [#, rudimentary, 3], [#, 'Trehalose-6-phosphate synthase 1', 3], [#, 'peroxisomal Multifunctional enzyme type 2', 3], [#, sepia, 3], [#, 'XPG-like endonuclease', 4], [#, 'TBP-associated factor 1', 4]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [9, [#, [#, 'ariadne 2', 1], [#, 'Cardiolipin synthase', 1], [#, 'Sphingomyelin synthase related', 1], [#, 'Phosphatidylserine synthase', 1], [#, 'Pyruvate kinase', 1], [#, 'easily shocked', 1], [#, fumble, 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [10, [#, [#, '5.2.1.8', 33], [#, '3.4.19.12', 36], [#, '3.1.3.16', 38], [#, '3.1.1.3', 51], [#, '3.6.4.13', 54], [#, '2.7.11.1', 104]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [10, [#, [#, '2.5.1.16', 1], [#, '2.1.1.62', 1], [#, '2.1.1.56', 1], [#, '2.1.1.386', 1], [#, '2.3.3.10', 1], [#, '2.3.3.8', 1], [#, '2.3.1.168', 1]]]). -fb_tsv_pred_stats('most-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'peptidylprolyl isomerase', 33], [#, 'ubiquitinyl hydrolase 1', 36], [#, 'protein-serine/threonine phosphatase', 38], [#, 'triacylglycerol lipase', 51], [#, 'RNA helicase', 54], [#, 'non-specific serine/threonine protein kinase', 104]]]). -fb_tsv_pred_stats('less-frequent', 'Dmel_enzyme_data', [11, [#, [#, 'spermidine synthase', 1], [#, 'mRNA (2\'-O-methyladenosine-N(6)-)-methyltransferase', 1], [#, 'mRNA (guanine-N(7))-methyltransferase', 1], [#, 'small RNA 2\'-O-methyltransferase', 1], [#, 'hydroxymethylglutaryl-CoA synthase', 1], [#, 'ATP citrate synthase', 1], [#, 'dihydrolipoyllysine-residue (2-methylpropanoyl)transferase', 1]]]). -fb_tsv_pred_stats('num-columns', dmel_gene_sequence_ontology_annotations, [4]). -fb_tsv_pred_stats('duplicated-rows', dmel_gene_sequence_ontology_annotations, [0]). -fb_tsv_pred_stats('total-rows', dmel_gene_sequence_ontology_annotations, [38590]). -fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [1, 17902, object]). -fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [2, 17902, object]). -fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [3, 44, object]). -fb_tsv_pred_stats('unique-values', dmel_gene_sequence_ontology_annotations, [4, 44, object]). -fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_gene_sequence_ontology_annotations, [4, 0, [], []]). -fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0263102', 5], [#, 'FBgn0264308', 5], [#, 'FBgn0285944', 5], [#, 'FBgn0000448', 5], [#, 'FBgn0266019', 5], [#, 'FBgn0260866', 5], [#, 'FBgn0283521', 5]]]). -fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [1, [#, [#, 'FBgn0000003', 1], [#, 'FBgn0085282', 1], [#, 'FBgn0085280', 1], [#, 'FBgn0085279', 1], [#, 'FBgn0085277', 1], [#, 'FBgn0085276', 1], [#, 'FBgn0085274', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, psq, 5], [#, hbt, 5], [#, para, 5], [#, 'Hr3', 5], [#, rudhira, 5], [#, dnr1, 5], [#, lola, 5]]]). -fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [2, [#, [#, '7SLRNA:CR32864', 1], [#, 'CG34253', 1], [#, 'CG34251', 1], [#, 'CG34250', 1], [#, 'CG34248', 1], [#, 'CG34247', 1], [#, 'CG34245', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, gene_with_stop_codon_read_through, 402], [#, antisense_lncRNA_gene, 507], [#, gene, 767], [#, gene_with_edited_transcript, 810], [#, lncRNA_gene, 1996], [#, protein_coding_gene, 13986], [#, nuclear_gene, 17707]]]). -fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [3, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, 'RNase_MRP_RNA_gene', 1], [#, 'RNase_P_RNA_gene', 1], [#, mt_SSU_rRNA_gene, 1], [#, mt_LSU_rRNA_gene, 1], [#, gene_with_recoded_mRNA, 2]]]). -fb_tsv_pred_stats('most-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0000697', 402], [#, 'SO:0002182', 507], [#, 'SO:0000704', 767], [#, 'SO:0000548', 810], [#, 'SO:0002127', 1996], [#, 'SO:0001217', 13986], [#, 'SO:0000087', 17707]]]). -fb_tsv_pred_stats('less-frequent', dmel_gene_sequence_ontology_annotations, [4, [#, [#, 'SO:0002353', 1], [#, 'SO:0001269', 1], [#, 'SO:0001640', 1], [#, 'SO:0001639', 1], [#, 'SO:0002365', 1], [#, 'SO:0002364', 1], [#, 'SO:0000693', 2]]]). -fb_tsv_pred_stats('num-columns', dmel_unique_protein_isoforms, [4]). -fb_tsv_pred_stats('duplicated-rows', dmel_unique_protein_isoforms, [0]). -fb_tsv_pred_stats('total-rows', dmel_unique_protein_isoforms, [22452]). -fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [1, 13986, object]). -fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [2, 13986, object]). -fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [3, 22452, object]). -fb_tsv_pred_stats('unique-values', dmel_unique_protein_isoforms, [4, 5633, object]). -fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', dmel_unique_protein_isoforms, [4, '', 16820]). -fb_tsv_pred_stats('missing-values', dmel_unique_protein_isoforms, [4, 16820, [#, ''], [#, 16820]]). -fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0003429', 23], [#, 'FBgn0033504', 25], [#, 'FBgn0266696', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 57], [#, 'FBgn0033159', 75]]]). -fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [1, [#, [#, 'FBgn0000008', 1], [#, 'FBgn0038579', 1], [#, 'FBgn0038581', 1], [#, 'FBgn0038582', 1], [#, 'FBgn0038583', 1], [#, 'FBgn0038584', 1], [#, 'FBgn0038585', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [2, [#, [#, slo, 23], [#, 'CAP', 25], [#, 'Svil', 25], [#, trol, 25], [#, 'mod(mdg4)', 31], [#, para, 57], [#, 'Dscam1', 75]]]). -fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [2, [#, [#, a, 1], [#, 'CG14313', 1], [#, 'CG14314', 1], [#, 'CG7988', 1], [#, 'CG7183', 1], [#, mTerf5, 1], [#, 'Non3', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'Saf-B-PF', 1], [#, 'sosie-PC', 1], [#, 'Nct-PC', 1], [#, 'CG3744-PG', 1], [#, 'CG3744-PF', 1], [#, 'Not11-PC', 1]]]). -fb_tsv_pred_stats('less-frequent', dmel_unique_protein_isoforms, [4, [#, [#, 'MAN1-PB,MAN1-PC', 1], [#, 'Nct-PC', 1], [#, 'sosie-PC', 1], [#, 'Saf-B-PF', 1], [#, 'Ude-PC,Ude-PD', 1], [#, 'CG5805-PB', 1], [#, 'atl-PB,atl-PC', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_annotation_ID, [6]). -fb_tsv_pred_stats('duplicated-rows', fbgn_annotation_ID, [0]). -fb_tsv_pred_stats('total-rows', fbgn_annotation_ID, [17901]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [1, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [2, 1, object]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [3, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [4, 6498, object]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [5, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_annotation_ID, [6, 2214, object]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [4, '', 11059]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [4, 11059, [#, ''], [#, 11059]]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [5, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_annotation_ID, [6, '', 15268]). -fb_tsv_pred_stats('missing-values', fbgn_annotation_ID, [6, 15268, [#, ''], [#, 15268]]). -fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). -fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [2, [#, [#, 'Dmel', 17901]]]). -fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0031342', 4], [#, 'FBgn0034648', 4], [#, 'FBgn0037173', 6], [#, 'FBgn0003932', 6], [#, 'FBgn0052605', 12], [#, 'FBgn0002867', 32]]]). -fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [4, [#, [#, 'FBgn0034701,FBgn0034702', 1], [#, 'FBgn0036269,FBgn0036270', 1], [#, 'FBgn0062499', 1], [#, 'FBgn0045834,FBgn0046807', 1], [#, 'FBgn0060100', 1], [#, 'FBgn0036185,FBgn0040818', 1], [#, 'FBgn0036175', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG14398', 4], [#, 'CG15675', 4], [#, 'CG10450', 4], [#, 'CG14458', 6], [#, 'CG2149', 6], [#, 'CG32605', 12]]]). -fb_tsv_pred_stats('less-frequent', fbgn_annotation_ID, [6, [#, [#, 'CG13505', 1], [#, 'CG15275,CG15276,CG15277,CG33515', 1], [#, 'CG31537,CG2534', 1], [#, 'CG30111,CG5058', 1], [#, 'CG30164,CG30165,CG30166,CG4556', 1], [#, 'CG30179,CG30174,CG33149,CG3220', 1], [#, 'CG14428', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_exons2affy1_overlaps, [30]). -fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy1_overlaps, [0]). -fb_tsv_pred_stats('total-rows', fbgn_exons2affy1_overlaps, [12082]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [1, 12082, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [2, 11598, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [3, 11576, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [4, 11569, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [5, 11538, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [6, 11509, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [7, 11474, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [8, 11449, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [9, 11414, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [10, 11387, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [11, 11345, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [12, 11314, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [13, 11244, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [14, 11171, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [15, 10830, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [16, 1808, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [17, 1555, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [18, 1450, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [19, 1358, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [20, 1308, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [21, 1258, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [22, 1213, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [23, 1183, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [24, 1139, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [25, 1102, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [26, 1058, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [27, 994, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [28, 922, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [29, 743, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy1_overlaps, [30, 34, object]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [3, '', 74]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [3, 74, [#, ''], [#, 74]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [4, '', 105]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [4, 105, [#, ''], [#, 105]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [5, '', 149]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [5, 149, [#, ''], [#, 149]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [6, '', 184]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [6, 184, [#, ''], [#, 184]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [7, '', 232]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [7, 232, [#, ''], [#, 232]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [8, '', 265]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [8, 265, [#, ''], [#, 265]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [9, '', 305]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [9, 305, [#, ''], [#, 305]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [10, '', 341]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [10, 341, [#, ''], [#, 341]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [11, '', 392]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [11, 392, [#, ''], [#, 392]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [12, '', 425]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [12, 425, [#, ''], [#, 425]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [13, '', 506]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [13, 506, [#, ''], [#, 506]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [14, '', 587]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [14, 587, [#, ''], [#, 587]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [15, '', 947]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [15, 947, [#, ''], [#, 947]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [16, '', 10174]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [16, 10174, [#, ''], [#, 10174]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [17, '', 10457]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [17, 10457, [#, ''], [#, 10457]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [18, '', 10572]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [18, 10572, [#, ''], [#, 10572]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [19, '', 10667]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [19, 10667, [#, ''], [#, 10667]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [20, '', 10722]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [20, 10722, [#, ''], [#, 10722]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [21, '', 10774]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [21, 10774, [#, ''], [#, 10774]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [22, '', 10821]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [22, 10821, [#, ''], [#, 10821]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [23, '', 10853]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [23, 10853, [#, ''], [#, 10853]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [24, '', 10897]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [24, 10897, [#, ''], [#, 10897]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [25, '', 10935]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [25, 10935, [#, ''], [#, 10935]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [26, '', 10982]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [26, 10982, [#, ''], [#, 10982]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [27, '', 11048]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [27, 11048, [#, ''], [#, 11048]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [28, '', 11122]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [28, 11122, [#, ''], [#, 11122]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [29, '', 11305]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [29, 11305, [#, ''], [#, 11305]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy1_overlaps, [30, '', 12047]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy1_overlaps, [30, 12047, [#, ''], [#, 12047]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [2, [#, [#, '151241_f_at_37', 4], [#, '152093_at_1981', 4], [#, '150941_f_at_119', 5], [#, '151193_f_at_78', 6], [#, '151224_f_at_40', 6], [#, '150311_at_95', 7], [#, '150941_f_at_115', 13]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [2, [#, [#, '143052_at_1832', 1], [#, '154468_at_260', 1], [#, '152374_at_1177', 1], [#, '151894_at_1465', 1], [#, '154463_at_1950', 1], [#, '154463_at_2378', 1], [#, '154482_at_2296', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [3, [#, [#, '141538_at_2427', 3], [#, '147260_at_95', 3], [#, '155060_at_1425', 3], [#, '152093_at_2013', 4], [#, '151873_at_2152', 4], [#, '150311_at_124', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [3, [#, [#, '143052_at_1816', 1], [#, '149464_at_1100', 1], [#, '142785_at_1174', 1], [#, '142029_at_45', 1], [#, '149466_at_2832', 1], [#, '149467_at_1882', 1], [#, '149468_at_757', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '147260_at_80', 3], [#, '147730_at_550', 3], [#, '155060_at_1472', 3], [#, '151873_at_2043', 4], [#, '152093_at_2053', 4], [#, '150311_at_247', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [4, [#, [#, '143052_at_1742', 1], [#, '152622_at_824', 1], [#, '149458_at_1158', 1], [#, '149459_at_906', 1], [#, '154507_at_1873', 1], [#, '149463_at_2017', 1], [#, '149464_at_1134', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [5, [#, [#, '147260_at_76', 3], [#, '155060_at_1504', 3], [#, '148466_at_864', 3], [#, '151873_at_2023', 4], [#, '152093_at_2081', 4], [#, '150311_at_271', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [5, [#, [#, '143052_at_1727', 1], [#, '154719_at_2453', 1], [#, '141210_at_404', 1], [#, '153896_at_1100', 1], [#, '149435_at_300', 1], [#, '149436_at_386', 1], [#, '149441_at_1003', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [6, [#, [#, '142689_at_2404', 3], [#, '151429_at_230', 3], [#, '147260_at_69', 3], [#, '152093_at_2097', 4], [#, '151873_at_2014', 4], [#, '150311_at_292', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [6, [#, [#, '143052_at_1717', 1], [#, '151951_at_2428', 1], [#, '154803_at_2317', 1], [#, '149420_at_517', 1], [#, '149421_at_366', 1], [#, '154555_at_1035', 1], [#, '154555_at_1375', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [7, [#, [#, '151429_at_248', 3], [#, '141538_at_2265', 3], [#, '155060_at_1543', 3], [#, '151873_at_1834', 4], [#, '152093_at_2142', 4], [#, '150311_at_321', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [7, [#, [#, '143052_at_1703', 1], [#, '154319_at_927', 1], [#, '154993_at_1959', 1], [#, '149402_at_2878', 1], [#, '149403_at_625', 1], [#, '149408_at_1010', 1], [#, '149409_at_619', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '151429_at_270', 3], [#, '155060_at_1574', 3], [#, '142689_at_2342', 3], [#, '151873_at_1804', 4], [#, '152093_at_2177', 4], [#, '150311_at_350', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [8, [#, [#, '150941_f_at_115', 1], [#, '142317_at_420', 1], [#, '141883_at_323', 1], [#, '149397_at_943', 1], [#, '149398_at_568', 1], [#, '152411_at_1798', 1], [#, '149399_at_1928', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '155060_at_1631', 3], [#, '151429_at_293', 3], [#, '147260_at_36', 3], [#, '152093_at_2220', 4], [#, '151873_at_1786', 4], [#, '150311_at_358', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [9, [#, [#, '150941_f_at_113', 1], [#, '149380_at_1052', 1], [#, '149381_at_595', 1], [#, '149382_at_343', 1], [#, '149384_at_626', 1], [#, '149385_at_909', 1], [#, '149386_at_153', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '142689_at_2195', 3], [#, '147260_at_34', 3], [#, '141538_at_2111', 3], [#, '152093_at_2221', 4], [#, '151873_at_1747', 4], [#, '150311_at_405', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [10, [#, [#, '150941_f_at_111', 1], [#, '149364_at_1814', 1], [#, '149365_at_276', 1], [#, '149368_at_173', 1], [#, '149371_at_1969', 1], [#, '149372_at_632', 1], [#, '149374_at_1908', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151429_at_351', 3], [#, '142689_at_2154', 3], [#, '141538_at_2086', 3], [#, '152093_at_2253', 4], [#, '151873_at_1723', 4], [#, '150311_at_406', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [11, [#, [#, '151224_f_at_40', 1], [#, '149352_at_2845', 1], [#, '155039_at_1822', 1], [#, '149354_at_228', 1], [#, '153107_at_1501', 1], [#, '149355_at_446', 1], [#, '152216_at_1907', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '141538_at_2050', 3], [#, '147260_at_29', 3], [#, '151429_at_444', 3], [#, '151873_at_1696', 4], [#, '152093_at_2286', 4], [#, '150311_at_428', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [12, [#, [#, '143052_at_1570', 1], [#, '153297_at_1146', 1], [#, '141292_at_956', 1], [#, '155136_at_3280', 1], [#, '151994_at_924', 1], [#, '154820_at_469', 1], [#, '152906_at_2090', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '155060_at_1834', 3], [#, '147260_at_27', 3], [#, '142689_at_2057', 3], [#, '151873_at_1681', 4], [#, '152093_at_2365', 4], [#, '150311_at_513', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [13, [#, [#, '143052_at_1561', 1], [#, '149339_at_461', 1], [#, '142566_at_6907', 1], [#, '149340_at_389', 1], [#, '149341_at_1305', 1], [#, '149343_at_547', 1], [#, '153316_at_970', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '141538_at_1972', 3], [#, '155060_at_1844', 3], [#, '147260_at_21', 3], [#, '152093_at_2369', 4], [#, '151873_at_1656', 4], [#, '150311_at_569', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [14, [#, [#, '143052_at_1547', 1], [#, '153677_at_593', 1], [#, '142725_at_3484', 1], [#, '154418_at_2357', 1], [#, '149337_at_1771', 1], [#, '149338_at_114', 1], [#, '153664_at_1123', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '155060_at_1866', 3], [#, '147260_at_19', 3], [#, '141538_at_1905', 3], [#, '151873_at_1630', 4], [#, '152093_at_2425', 4], [#, '150311_at_588', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [15, [#, [#, '143052_at_1488', 1], [#, '142725_at_3437', 1], [#, '154418_at_2421', 1], [#, '149337_at_1722', 1], [#, '149338_at_101', 1], [#, '153664_at_1167', 1], [#, '149339_at_383', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '151193_f_at_66', 3], [#, '151241_f_at_31', 5], [#, '151193_f_at_70', 6], [#, '151224_f_at_40', 7], [#, '150941_f_at_119', 7], [#, '150941_f_at_115', 7]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [16, [#, [#, '143052_at_1399', 1], [#, '154464_at_2230', 1], [#, '152047_at_1146', 1], [#, '150835_at_1439', 1], [#, '154168_at_1052', 1], [#, '153210_at_1520', 1], [#, '150817_at_565', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '142169_at_450', 2], [#, '146155_at_129', 2], [#, '152590_at_972', 2], [#, '142115_at_370', 2], [#, '143730_at_1670', 2], [#, '150941_f_at_115', 9]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [17, [#, [#, '143052_at_1395', 1], [#, '151270_r_at_25', 1], [#, '151257_at_31', 1], [#, '151250_at_222', 1], [#, '151229_at_145', 1], [#, '151212_i_at_63', 1], [#, '151207_r_at_79', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '142667_at_1666', 2], [#, '142844_at_1801', 2], [#, '143730_at_1655', 2], [#, '146200_at_740', 2], [#, '145665_at_260', 2], [#, '150941_f_at_113', 3]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [18, [#, [#, '143052_at_1376', 1], [#, '146970_at_795', 1], [#, '142323_at_349', 1], [#, '152548_at_1257', 1], [#, '142085_at_360', 1], [#, '151839_at_572', 1], [#, '147900_at_1316', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '141971_at_425', 2], [#, '152590_at_890', 2], [#, '150643_at_593', 2], [#, '150117_at_272', 2], [#, '146155_at_95', 2], [#, '141331_at_764', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [19, [#, [#, '143052_at_1311', 1], [#, '146844_at_45', 1], [#, '152619_at_980', 1], [#, '147717_at_296', 1], [#, '141654_at_949', 1], [#, '147704_at_309', 1], [#, '151140_at_34', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '152322_at_1081', 2], [#, '150574_at_674', 2], [#, '142012_at_515', 2], [#, '150611_at_681', 2], [#, '146094_at_3507', 2], [#, '143040_at_1502', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [20, [#, [#, '141890_at_423', 1], [#, '146741_at_332', 1], [#, '146978_s_at_613', 1], [#, '142001_r_at_17', 1], [#, '152057_at_746', 1], [#, '153061_at_3626', 1], [#, '147846_at_517', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '143730_at_1571', 2], [#, '143071_at_199', 2], [#, '153690_at_1496', 2], [#, '146572_at_1248', 2], [#, '151196_r_at_69', 2], [#, '142734_at_582', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [21, [#, [#, '154290_at_1576', 1], [#, '150536_at_1846', 1], [#, '142057_at_306', 1], [#, '149536_at_287', 1], [#, '142647_at_483', 1], [#, '152342_at_1443', 1], [#, '150858_at_1203', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [22, [#, [#, '152828_at_1192', 2], [#, '145513_at_1169', 2], [#, '142641_at_1007', 2], [#, '145665_at_185', 2], [#, '145804_at_113', 2], [#, '144663_at_167', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [22, [#, [#, '152590_at_807', 1], [#, '150536_at_1823', 1], [#, '142057_at_329', 1], [#, '149536_at_257', 1], [#, '142647_at_451', 1], [#, '152342_at_1508', 1], [#, '150858_at_1226', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [23, [#, [#, '145121_at_953', 2], [#, '152828_at_1286', 2], [#, '145513_at_1144', 2], [#, '145665_at_164', 2], [#, '145804_at_98', 2], [#, '146744_at_188', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [23, [#, [#, '153298_at_1470', 1], [#, '150321_at_1006', 1], [#, '150383_at_2084', 1], [#, '149454_at_1935', 1], [#, '150142_at_1363', 1], [#, '150536_at_1771', 1], [#, '142057_at_344', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [24, [#, [#, '152828_at_1322', 2], [#, '145513_at_1132', 2], [#, '145665_at_155', 2], [#, '145804_at_94', 2], [#, '146094_at_3402', 2], [#, '151831_at_920', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [24, [#, [#, '152253_at_1253', 1], [#, '151549_i_at_495', 1], [#, '142287_at_5287', 1], [#, '150858_at_1274', 1], [#, '152342_at_1587', 1], [#, '142647_at_365', 1], [#, '149536_at_82', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '145121_at_1044', 2], [#, '152828_at_1374', 2], [#, '145513_at_1115', 2], [#, '145665_at_112', 2], [#, '145804_at_88', 2], [#, '143367_at_1268', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [25, [#, [#, '152253_at_1277', 1], [#, '152342_at_1612', 1], [#, '142647_at_311', 1], [#, '149536_at_79', 1], [#, '142057_at_440', 1], [#, '150536_at_1708', 1], [#, '150142_at_1308', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '142968_at_1016', 2], [#, '147307_at_1054', 2], [#, '152828_at_1410', 2], [#, '145513_at_1081', 2], [#, '145804_at_83', 2], [#, '152030_at_2454', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [26, [#, [#, '151555_at_452', 1], [#, '150321_at_786', 1], [#, '149984_at_574', 1], [#, '150288_at_440', 1], [#, '154729_at_1256', 1], [#, '150235_at_482', 1], [#, '153559_at_1188', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '142051_at_710', 2], [#, '143071_at_395', 2], [#, '153690_at_1701', 2], [#, '152030_at_2472', 2], [#, '148950_at_1101', 2], [#, '146572_at_1489', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [27, [#, [#, '151555_at_477', 1], [#, '143703_at_549', 1], [#, '150198_at_145', 1], [#, '153568_at_2595', 1], [#, '153408_at_895', 1], [#, '154631_at_2296', 1], [#, '149802_at_35', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '151831_at_1098', 2], [#, '143071_at_435', 2], [#, '142051_at_734', 2], [#, '153690_at_1718', 2], [#, '142946_at_186', 2], [#, '148950_at_1027', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [28, [#, [#, '154840_at_235', 1], [#, '149689_at_838', 1], [#, '152285_at_955', 1], [#, '151626_at_139', 1], [#, '151157_at_129', 1], [#, '151986_at_1676', 1], [#, '149373_at_477', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '143040_at_1070', 2], [#, '148950_at_1005', 2], [#, '152322_at_1333', 2], [#, '142209_at_639', 2], [#, '143367_at_1495', 2], [#, '153005_at_1202', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [29, [#, [#, '154840_at_217', 1], [#, '151546_i_at_74', 1], [#, '145929_at_1640', 1], [#, '151417_at_35', 1], [#, '145917_at_142', 1], [#, '154703_at_1319', 1], [#, '145904_at_869', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '151241_f_at_37', 1], [#, '145456_at_322', 1], [#, '142630_at_415', 1], [#, '148015_at_1581', 1], [#, '153230_at_2930', 2], [#, '154681_at_1547', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy1_overlaps, [30, [#, [#, '153483_at_641', 1], [#, '150941_f_at_90', 1], [#, '144004_at_5787', 1], [#, '144775_at_57', 1], [#, '144816_at_1278', 1], [#, '143155_at_2478', 1], [#, '148015_at_1581', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_exons2affy2_overlaps, [14]). -fb_tsv_pred_stats('duplicated-rows', fbgn_exons2affy2_overlaps, [4149]). -fb_tsv_pred_stats('total-rows', fbgn_exons2affy2_overlaps, [12905]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [1, 8719, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [2, 1595, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [3, 1248, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [4, 1045, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [5, 922, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [6, 830, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [7, 752, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [8, 699, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [9, 639, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [10, 573, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [11, 508, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [12, 442, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [13, 358, object]). -fb_tsv_pred_stats('unique-values', fbgn_exons2affy2_overlaps, [14, 207, object]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [1, '', 3969]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [1, 3969, [#, ''], [#, 3969]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [2, '', 11248]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [2, 11248, [#, ''], [#, 11248]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [3, '', 11607]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [3, 11607, [#, ''], [#, 11607]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [4, '', 11816]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [4, 11816, [#, ''], [#, 11816]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [5, '', 11943]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [5, 11943, [#, ''], [#, 11943]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [6, '', 12036]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [6, 12036, [#, ''], [#, 12036]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [7, '', 12116]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [7, 12116, [#, ''], [#, 12116]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [8, '', 12171]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [8, 12171, [#, ''], [#, 12171]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [9, '', 12231]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [9, 12231, [#, ''], [#, 12231]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [10, '', 12300]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [10, 12300, [#, ''], [#, 12300]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [11, '', 12366]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [11, 12366, [#, ''], [#, 12366]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [12, '', 12437]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [12, 12437, [#, ''], [#, 12437]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [13, '', 12525]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [13, 12525, [#, ''], [#, 12525]]). -fb_tsv_pred_stats('null-value-count', fbgn_exons2affy2_overlaps, [14, '', 12686]). -fb_tsv_pred_stats('missing-values', fbgn_exons2affy2_overlaps, [14, 12686, [#, ''], [#, 12686]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1630536_at_1664', 3], [#, '1633941_a_at_2332', 3], [#, '1632394_s_at_2089', 3], [#, '1625692_s_at_1888', 4], [#, '1627164_at_3410', 4], [#, '1625897_s_at_1066', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [1, [#, [#, '1637813_at_4186', 1], [#, '1638283_at_2407', 1], [#, '1639086_s_at_1819', 1], [#, '1631434_at_334', 1], [#, '1634855_s_at_1654', 1], [#, '1636657_at_473', 1], [#, '1641712_at_1957', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1635578_at_1116', 2], [#, '1633941_a_at_2295', 3], [#, '1631833_at_1721', 3], [#, '1625692_s_at_1832', 4], [#, '1635572_at_641', 4], [#, '1625897_s_at_1127', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [2, [#, [#, '1636558_a_at_1881', 1], [#, '1628490_at_857', 1], [#, '1641656_at_713', 1], [#, '1630618_at_2197', 1], [#, '1625101_at_335', 1], [#, '1635901_at_939', 1], [#, '1631798_s_at_1021', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1631351_s_at_1022', 2], [#, '1626491_at_1540', 2], [#, '1635572_at_608', 3], [#, '1633941_a_at_2232', 3], [#, '1631833_at_1705', 3], [#, '1625897_s_at_1142', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [3, [#, [#, '1636558_a_at_1850', 1], [#, '1631522_x_at_66', 1], [#, '1632440_at_286', 1], [#, '1625460_s_at_89', 1], [#, '1625783_at_502', 1], [#, '1626735_at_200', 1], [#, '1628502_at_164', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1632950_at_1094', 2], [#, '1629590_at_807', 2], [#, '1635578_at_1046', 2], [#, '1635572_at_529', 3], [#, '1631833_at_1657', 3], [#, '1625897_s_at_1160', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [4, [#, [#, '1636558_a_at_1823', 1], [#, '1629951_at_775', 1], [#, '1627721_at_1681', 1], [#, '1632946_at_1358', 1], [#, '1630788_at_1473', 1], [#, '1629262_at_502', 1], [#, '1628625_at_1245', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636445_at_196', 2], [#, '1635578_at_1031', 2], [#, '1634667_at_2047', 2], [#, '1631833_at_1617', 3], [#, '1635572_at_481', 3], [#, '1625897_s_at_1229', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [5, [#, [#, '1636558_a_at_1742', 1], [#, '1636314_at_387', 1], [#, '1625214_at_592', 1], [#, '1633462_at_1757', 1], [#, '1638793_at_441', 1], [#, '1630993_at_814', 1], [#, '1637693_at_840', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636445_at_205', 2], [#, '1628766_at_1592', 2], [#, '1627958_at_364', 2], [#, '1631833_at_1553', 3], [#, '1635572_at_448', 3], [#, '1625897_s_at_1282', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [6, [#, [#, '1636558_a_at_1725', 1], [#, '1629127_at_687', 1], [#, '1632948_x_at_741', 1], [#, '1631596_at_2406', 1], [#, '1623590_s_at_2676', 1], [#, '1638445_a_at_4372', 1], [#, '1632739_at_505', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1627427_s_at_1090', 2], [#, '1626491_at_1395', 2], [#, '1634933_s_at_300', 2], [#, '1635572_at_432', 3], [#, '1631833_at_1528', 3], [#, '1625897_s_at_1292', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [7, [#, [#, '1636558_a_at_1709', 1], [#, '1625051_at_611', 1], [#, '1634488_s_at_341', 1], [#, '1630421_at_597', 1], [#, '1628563_at_1739', 1], [#, '1636412_at_2651', 1], [#, '1634418_at_1457', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1627958_at_416', 2], [#, '1626732_at_695', 2], [#, '1626038_at_1253', 2], [#, '1635572_at_393', 3], [#, '1631833_at_1513', 3], [#, '1625897_s_at_1337', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [8, [#, [#, '1636558_a_at_1571', 1], [#, '1632338_a_at_1205', 1], [#, '1641119_at_364', 1], [#, '1627824_at_101', 1], [#, '1632926_at_75', 1], [#, '1631364_at_518', 1], [#, '1639058_at_120', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1630406_at_385', 2], [#, '1631351_s_at_947', 2], [#, '1628766_at_1690', 2], [#, '1631833_at_1487', 3], [#, '1635572_at_378', 3], [#, '1625897_s_at_1362', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [9, [#, [#, '1636558_a_at_1561', 1], [#, '1632926_at_17', 1], [#, '1631364_at_547', 1], [#, '1639058_at_103', 1], [#, '1628447_at_492', 1], [#, '1626455_s_at_399', 1], [#, '1638766_at_109', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1630406_at_337', 2], [#, '1629590_at_1045', 2], [#, '1633270_at_394', 2], [#, '1631833_at_1469', 3], [#, '1635572_at_297', 3], [#, '1625897_s_at_1444', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [10, [#, [#, '1636558_a_at_1482', 1], [#, '1635345_at_50', 1], [#, '1634677_at_643', 1], [#, '1635112_at_279', 1], [#, '1641708_at_3032', 1], [#, '1629586_at_1283', 1], [#, '1640473_at_4678', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1632147_at_448', 2], [#, '1629590_at_1085', 2], [#, '1634176_a_at_438', 2], [#, '1635572_at_234', 3], [#, '1631833_at_1450', 3], [#, '1625897_s_at_1488', 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [11, [#, [#, '1636558_a_at_1425', 1], [#, '1638214_at_467', 1], [#, '1637070_at_754', 1], [#, '1636893_at_55', 1], [#, '1639804_at_1221', 1], [#, '1628992_at_20', 1], [#, '1627697_at_763', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1634933_s_at_139', 2], [#, '1627958_at_512', 2], [#, '1627427_s_at_891', 2], [#, '1627339_at_219', 2], [#, '1631833_at_1435', 3], [#, '1635572_at_209', 3]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [12, [#, [#, '1636558_a_at_1397', 1], [#, '1638214_at_453', 1], [#, '1637070_at_778', 1], [#, '1636893_at_43', 1], [#, '1639804_at_1258', 1], [#, '1628992_at_17', 1], [#, '1627697_at_738', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1634933_s_at_106', 2], [#, '1632147_at_514', 2], [#, '1633837_at_546', 2], [#, '1627339_at_124', 2], [#, '1631833_at_1404', 3], [#, '1635572_at_157', 3]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [13, [#, [#, '1636558_a_at_1379', 1], [#, '1638214_at_432', 1], [#, '1636893_at_32', 1], [#, '1639804_at_1271', 1], [#, '1628992_at_15', 1], [#, '1627697_at_714', 1], [#, '1635345_at_43', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1627339_at_73', 2], [#, '1626491_at_1063', 2], [#, '1634159_s_at_35', 2], [#, '1626732_at_641', 2], [#, '1631833_at_1383', 3], [#, '1635572_at_129', 3]]]). -fb_tsv_pred_stats('less-frequent', fbgn_exons2affy2_overlaps, [14, [#, [#, '1636558_a_at_1365', 1], [#, '1628563_at_1922', 1], [#, '1636412_at_2551', 1], [#, '1634418_at_1571', 1], [#, '1632338_a_at_1456', 1], [#, '1641119_at_581', 1], [#, '1626455_s_at_584', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp_expanded, [11]). -fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp_expanded, [0]). -fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp_expanded, [35732]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [1, 1, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [2, 27, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [3, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [4, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [5, 11358, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [6, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [7, 9, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [8, 35732, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [9, 35732, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [10, 30803, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp_expanded, [11, 30803, object]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [4, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [5, '', 11174]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [5, 11174, [#, ''], [#, 11174]]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [6, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [8, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [9, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [10, '', 4930]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [10, 4930, [#, ''], [#, 4930]]). -fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp_expanded, [11, '', 4930]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp_expanded, [11, 4930, [#, ''], [#, 4930]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [1, [#, [#, 'Dmel', 35732]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, 'C_D_box_snoRNA_gene', 145], [#, tRNA_gene, 312], [#, pseudogene, 365], [#, antisense_lncRNA_gene, 621], [#, miRNA_gene, 747], [#, lncRNA_gene, 2374], [#, protein_coding_gene, 30802]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [2, [#, [#, sbRNA_gene, 1], [#, 'SRP_RNA_gene', 1], [#, mt_LSU_rRNA_gene, 1], [#, mt_SSU_rRNA_gene, 1], [#, 'RNase_MRP_RNA_gene', 1], [#, cytosolic_rRNA_28S_gene, 2], [#, 'RNA_7SK_gene', 2]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [3, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, heph, 25], [#, trol, 25], [#, 'CAP', 28], [#, 'Svil', 31], [#, 'mod(mdg4)', 31], [#, para, 60], [#, 'Dscam1', 75]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [4, [#, [#, 'CG16953', 1], [#, 'Tsen2', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, hephaestus, 25], [#, 'CAP', 28], [#, 'modifier of mdg4', 31], [#, 'Supervillin', 31], [#, paralytic, 60], [#, 'Down syndrome cell adhesion molecule 1', 75]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [5, [#, [#, 'long non-coding RNA:CR46535', 1], [#, 'Gustatory receptor 22e', 1], [#, 'long non-coding RNA:CR45471', 1], [#, 'Gustatory receptor 36a', 1], [#, 'Gustatory receptor 36b', 1], [#, 'Gustatory receptor 36c', 1], [#, 'Gustatory receptor 59a', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG31000', 25], [#, 'CG33950', 25], [#, 'CG18408', 28], [#, 'CG45186', 31], [#, 'CG32491', 31], [#, 'CG9907', 60], [#, 'CG17800', 75]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [6, [#, [#, 'CG16953', 1], [#, 'CG31812', 1], [#, 'CG31815', 1], [#, 'CG31816', 1], [#, 'CR31822', 1], [#, 'CG31823', 1], [#, 'CR31824', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485], [#, ncRNA, 3059], [#, mRNA, 30802]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [7, [#, [#, snRNA, 32], [#, rRNA, 115], [#, pre_miRNA, 262], [#, snoRNA, 300], [#, tRNA, 312], [#, pseudogene, 365], [#, miRNA, 485]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [10, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'p115-PB', 1], [#, 'meso18E-PA', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PC', 1], [#, 'rept-PB', 1], [#, 'a-PA', 1]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp_expanded, [11, [#, [#, 'a-PA', 1], [#, 'meso18E-PC', 1], [#, 'meso18E-PB', 1], [#, 'meso18E-PA', 1], [#, 'p115-PB', 1], [#, 'p115-PA', 1], [#, 'pins-PA', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_fbtr_fbpp, [3]). -fb_tsv_pred_stats('duplicated-rows', fbgn_fbtr_fbpp, [0]). -fb_tsv_pred_stats('total-rows', fbgn_fbtr_fbpp, [35732]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [1, 17901, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [2, 35732, object]). -fb_tsv_pred_stats('unique-values', fbgn_fbtr_fbpp, [3, 30803, object]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_fbtr_fbpp, [3, '', 4930]). -fb_tsv_pred_stats('missing-values', fbgn_fbtr_fbpp, [3, 4930, [#, ''], [#, 4930]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0011224', 25], [#, 'FBgn0284408', 25], [#, 'FBgn0033504', 28], [#, 'FBgn0266696', 31], [#, 'FBgn0002781', 31], [#, 'FBgn0285944', 60], [#, 'FBgn0033159', 75]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [1, [#, [#, 'FBgn0038809', 1], [#, 'FBgn0051812', 1], [#, 'FBgn0051815', 1], [#, 'FBgn0051816', 1], [#, 'FBgn0051822', 1], [#, 'FBgn0051823', 1], [#, 'FBgn0051824', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0309148', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0304236', 1], [#, 'FBpp0071677', 1]]]). -fb_tsv_pred_stats('less-frequent', fbgn_fbtr_fbpp, [3, [#, [#, 'FBpp0071677', 1], [#, 'FBpp0308522', 1], [#, 'FBpp0290917', 1], [#, 'FBpp0074581', 1], [#, 'FBpp0309148', 1], [#, 'FBpp0071045', 1], [#, 'FBpp0084559', 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_gleanr, [4]). -fb_tsv_pred_stats('duplicated-rows', fbgn_gleanr, [535]). -fb_tsv_pred_stats('total-rows', fbgn_gleanr, [174893]). -fb_tsv_pred_stats('unique-values', fbgn_gleanr, [1, 11, object]). -fb_tsv_pred_stats('unique-values', fbgn_gleanr, [2, 174055, object]). -fb_tsv_pred_stats('unique-values', fbgn_gleanr, [3, 174055, object]). -fb_tsv_pred_stats('unique-values', fbgn_gleanr, [4, 174322, object]). -fb_tsv_pred_stats('missing-values', fbgn_gleanr, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_gleanr, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_gleanr, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_gleanr, [4, 0, [], []]). -fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [1, [#, [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038], [#, 'Dpse', 16475], [#, 'Dyak', 16483], [#, 'Dsec', 16945], [#, 'Dper', 17373]]]). -fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [1, [#, [#, 'Dvir', 14755], [#, 'Dmoj', 14922], [#, 'Dgri', 15319], [#, 'Dana', 15329], [#, 'Dere', 15380], [#, 'Dwil', 15874], [#, 'Dsim', 16038]]]). -fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [2, [#, [#, 'Dpse\\GA30155', 4], [#, 'Dpse\\GA30065', 4], [#, 'Dpse\\GA30499', 4], [#, 'Dpse\\GA30462', 4], [#, 'Dpse\\GA30119', 5], [#, 'Dpse\\GA30479', 5], [#, 'Dpse\\GA30442', 11]]]). -fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [2, [#, [#, 'Dper\\GL22947', 1], [#, 'Dwil\\GK16453', 1], [#, 'Dwil\\GK11213', 1], [#, 'Dwil\\GK16551', 1], [#, 'Dwil\\GK11264', 1], [#, 'Dwil\\GK11214', 1], [#, 'Dwil\\GK11265', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0263057', 4], [#, 'FBgn0263238', 4], [#, 'FBgn0265036', 4], [#, 'FBgn0264756', 4], [#, 'FBgn0262499', 5], [#, 'FBgn0264773', 5], [#, 'FBgn0264579', 11]]]). -fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [3, [#, [#, 'FBgn0160537', 1], [#, 'FBgn0218455', 1], [#, 'FBgn0213224', 1], [#, 'FBgn0218553', 1], [#, 'FBgn0213275', 1], [#, 'FBgn0213225', 1], [#, 'FBgn0213276', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_gleanr, [4, [#, [#, dgri_GLEANR_4274, 2], [#, dana_GLEANR_19894, 2], [#, dgri_GLEANR_7321, 2], [#, dgri_GLEANR_14174, 2], [#, dpse_GLEANR_5123, 3], [#, dpse_GLEANR_4701, 4], [#, dpse_GLEANR_8878, 4]]]). -fb_tsv_pred_stats('less-frequent', fbgn_gleanr, [4, [#, [#, dsim_GLEANR_6342, 1], [#, dwil_GLEANR_16628, 1], [#, dwil_GLEANR_11555, 1], [#, dwil_GLEANR_11556, 1], [#, dwil_GLEANR_11460, 1], [#, dwil_GLEANR_11461, 1], [#, dwil_GLEANR_11557, 1]]]). -fb_tsv_pred_stats('num-columns', fbgn_NAseq_Uniprot, [9]). -fb_tsv_pred_stats('duplicated-rows', fbgn_NAseq_Uniprot, [0]). -fb_tsv_pred_stats('total-rows', fbgn_NAseq_Uniprot, [1316132]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [1, 214968, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [2, 557, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [3, 214968, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [4, 762485, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [5, 69341, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [6, 193395, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [7, 208900, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [8, 34349, object]). -fb_tsv_pred_stats('unique-values', fbgn_NAseq_Uniprot, [9, 30241, object]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [4, '', 438122]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [4, 438122, [#, ''], [#, 438122]]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [5, '', 1246520]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [5, 1246520, [#, ''], [#, 1246520]]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [6, '', 1121258]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [6, 1121258, [#, ''], [#, 1121258]]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [7, '', 1107233]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [7, 1107233, [#, ''], [#, 1107233]]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [8, '', 1281783]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [8, 1281783, [#, ''], [#, 1281783]]). -fb_tsv_pred_stats('null-value-count', fbgn_NAseq_Uniprot, [9, '', 1285892]). -fb_tsv_pred_stats('missing-values', fbgn_NAseq_Uniprot, [9, 1285892, [#, ''], [#, 1285892]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, sta, 1332], [#, 'RpL5', 1362], [#, alphaTub84B, 1442], [#, 'Hsc70-4', 1611], [#, ninaE, 1699], [#, eEF2, 2370], [#, eEF1alpha1, 2383]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [1, [#, [#, 'Hsap\\FSBP', 1], [#, 'Dyak\\GE14653', 1], [#, 'Dyak\\GE14652', 1], [#, 'Dere\\GG16178', 1], [#, 'Dyak\\GE14651', 1], [#, 'Dyak\\GE14650', 1], [#, 'Dyak\\GE14649', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Dper', 34397], [#, 'Dmoj', 34929], [#, 'Dvir', 35196], [#, 'Dsim', 37463], [#, 'Dana', 38929], [#, 'Dyak', 39546], [#, 'Dmel', 938032]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [2, [#, [#, 'Cpac', 1], [#, 'Hvul', 1], [#, 'Zghe', 1], [#, 'Dhye', 1], [#, 'Dabu', 1], [#, 'Xlae', 1], [#, 'Cfum', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0003517', 1332], [#, 'FBgn0064225', 1362], [#, 'FBgn0003884', 1442], [#, 'FBgn0266599', 1611], [#, 'FBgn0002940', 1699], [#, 'FBgn0000559', 2370], [#, 'FBgn0284245', 2383]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [3, [#, [#, 'FBgn0289485', 1], [#, 'FBgn0232248', 1], [#, 'FBgn0232247', 1], [#, 'FBgn0108413', 1], [#, 'FBgn0232246', 1], [#, 'FBgn0232245', 1], [#, 'FBgn0232244', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'CH379071', 439], [#, 'AE014298', 5350], [#, 'AE014134', 5651], [#, 'AE014296', 5875], [#, 'AE013599', 6054], [#, 'AE014297', 7206]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [4, [#, [#, 'J01122', 1], [#, 'GH739917', 1], [#, 'GH740238', 1], [#, 'GH740504', 1], [#, 'GH740582', 1], [#, 'GH740722', 1], [#, 'GH741128', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AAA28968', 9], [#, 'CAA38960', 9], [#, 'AAA28969', 9], [#, 'AAA28966', 9], [#, 'AAC47002', 9], [#, 'AAA28425', 10]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [5, [#, [#, 'AFH08132', 1], [#, 'AAG22409', 1], [#, 'AAL28803', 1], [#, 'AAL57756', 1], [#, 'AAF46261', 1], [#, 'AAF46262', 1], [#, 'AAM29624', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'P02283', 24], [#, 'P84052', 31], [#, 'Q76FD7', 40], [#, 'Q76FE2', 47], [#, 'Q76N00', 50], [#, 'Q76FD9', 65]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [6, [#, [#, 'A1ZAK1', 1], [#, 'B4R037', 1], [#, 'B4R038', 1], [#, 'B4R040', 1], [#, 'B4R043', 1], [#, 'B4R044', 1], [#, 'B4R047', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6632090.0, 1], [#, 6627682.0, 1], [#, 6631334.0, 1], [#, 6631316.0, 1], [#, 6634144.0, 1], [#, 6624472.0, 1]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [7, [#, [#, 6611558.0, 1], [#, 6634144.0, 1], [#, 6631316.0, 1], [#, 6631334.0, 1], [#, 6627682.0, 1], [#, 6632090.0, 1], [#, 6632175.0, 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_168111', 1], [#, 'NM_168136', 1], [#, 'NM_168145', 1], [#, 'NM_168144', 1], [#, 'NM_001169879', 1], [#, 'NM_134950', 2]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [8, [#, [#, 'NM_141332', 1], [#, 'NM_001274510', 1], [#, 'NM_001274509', 1], [#, 'NM_001259707', 1], [#, 'NM_001169879', 1], [#, 'NM_168112', 1], [#, 'NM_168113', 1]]]). -fb_tsv_pred_stats('most-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_001137539', 1], [#, 'NP_001287647', 1], [#, 'NP_001287648', 1], [#, 'NP_001104474', 1], [#, 'NP_001188370', 1], [#, 'NP_001287646', 1]]]). -fb_tsv_pred_stats('less-frequent', fbgn_NAseq_Uniprot, [9, [#, [#, 'NP_648102', 1], [#, 'NP_001287648', 1], [#, 'NP_001287647', 1], [#, 'NP_001137539', 1], [#, 'NP_001104473', 1], [#, 'NP_001104472', 1], [#, 'NP_001104471', 1]]]). -fb_tsv_pred_stats('num-columns', gene_functional_complementation, [5]). -fb_tsv_pred_stats('duplicated-rows', gene_functional_complementation, [0]). -fb_tsv_pred_stats('total-rows', gene_functional_complementation, [463]). -fb_tsv_pred_stats('unique-values', gene_functional_complementation, [1, 319, object]). -fb_tsv_pred_stats('unique-values', gene_functional_complementation, [2, 319, object]). -fb_tsv_pred_stats('unique-values', gene_functional_complementation, [3, 376, object]). -fb_tsv_pred_stats('unique-values', gene_functional_complementation, [4, 376, object]). -fb_tsv_pred_stats('unique-values', gene_functional_complementation, [5, 392, object]). -fb_tsv_pred_stats('missing-values', gene_functional_complementation, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_functional_complementation, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_functional_complementation, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_functional_complementation, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_functional_complementation, [5, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [1, [#, [#, 'Lrrk', 5], [#, 'Marf', 5], [#, 'Pink1', 5], [#, oc, 7], [#, 'Nrg', 7], [#, cpx, 8], [#, 'TBPH', 8]]]). -fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [1, [#, [#, 'ATP6AP2', 1], [#, ci, 1], [#, cindr, 1], [#, clu, 1], [#, cn, 1], [#, cpa, 1], [#, csw, 1]]]). -fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0038816', 5], [#, 'FBgn0029870', 5], [#, 'FBgn0029891', 5], [#, 'FBgn0004102', 7], [#, 'FBgn0264975', 7], [#, 'FBgn0041605', 8], [#, 'FBgn0025790', 8]]]). -fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [2, [#, [#, 'FBgn0037671', 1], [#, 'FBgn0004859', 1], [#, 'FBgn0027598', 1], [#, 'FBgn0034087', 1], [#, 'FBgn0000337', 1], [#, 'FBgn0034577', 1], [#, 'FBgn0000382', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\MFN2', 4], [#, 'Hsap\\SOD1', 4], [#, 'Hsap\\L1CAM', 4], [#, 'Hsap\\PARK7', 4], [#, 'Hsap\\PINK1', 5], [#, 'Hsap\\LRRK2', 5], [#, 'Hsap\\TARDBP', 7]]]). -fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [3, [#, [#, 'Hsap\\ATP6AP2', 1], [#, 'Hsap\\EIF4A2', 1], [#, 'Hsap\\DROSHA', 1], [#, 'Hsap\\GRAP', 1], [#, 'Hsap\\SUPT16H', 1], [#, 'Hsap\\SRCAP', 1], [#, 'Hsap\\PIN1', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0265221', 4], [#, 'FBgn0024960', 4], [#, 'FBgn0026071', 4], [#, 'FBgn0086735', 4], [#, 'FBgn0086479', 5], [#, 'FBgn0262113', 5], [#, 'FBgn0261084', 7]]]). -fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [4, [#, [#, 'FBgn0262153', 1], [#, 'FBgn0289163', 1], [#, 'FBgn0289120', 1], [#, 'FBgn0286886', 1], [#, 'FBgn0289345', 1], [#, 'FBgn0283711', 1], [#, 'FBgn0288530', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0216943', 3], [#, 'FBrf0210782', 3], [#, 'FBrf0146918', 3], [#, 'FBrf0242427', 3], [#, 'FBrf0184161', 4], [#, 'FBrf0252066', 4], [#, 'FBrf0212111', 4]]]). -fb_tsv_pred_stats('less-frequent', gene_functional_complementation, [5, [#, [#, 'FBrf0211368', 1], [#, 'FBrf0101988', 1], [#, 'FBrf0193931', 1], [#, 'FBrf0227402', 1], [#, 'FBrf0230449', 1], [#, 'FBrf0188025', 1], [#, 'FBrf0174932', 1]]]). -fb_tsv_pred_stats('num-columns', gene_genetic_interactions, [6]). -fb_tsv_pred_stats('duplicated-rows', gene_genetic_interactions, [0]). -fb_tsv_pred_stats('total-rows', gene_genetic_interactions, [20321]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [1, 2958, object]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [2, 2958, object]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [3, 4615, object]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [4, 4615, object]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [5, 2, object]). -fb_tsv_pred_stats('unique-values', gene_genetic_interactions, [6, 5428, object]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [5, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_genetic_interactions, [6, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [1, [#, [#, 'Egfr', 168], [#, pbl, 173], [#, 'H', 173], [#, pnr, 174], [#, w, 181], [#, 'Ras85D', 365], [#, 'N', 384]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [1, [#, [#, 'Fit1', 1], [#, 'Gtpx', 1], [#, 'kat-60L1', 1], [#, 'Abl|fax', 1], [#, 'rpr|hid', 1], [#, 'Gfrl', 1], [#, 'mod(mdg4)|sc', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0003731', 168], [#, 'FBgn0003041', 173], [#, 'FBgn0001169', 173], [#, 'FBgn0003117', 174], [#, 'FBgn0003996', 181], [#, 'FBgn0003205', 365], [#, 'FBgn0004647', 384]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [2, [#, [#, 'FBgn0035498', 1], [#, 'FBgn0035438', 1], [#, 'FBgn0037375', 1], [#, 'FBgn0000017|FBgn0014163', 1], [#, 'FBgn0011706|FBgn0003997', 1], [#, 'FBgn0262869', 1], [#, 'FBgn0002781|FBgn0004170', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [3, [#, [#, wg, 110], [#, puc, 117], [#, 'Ras85D', 141], [#, 'Egfr', 158], [#, 'Diap1', 163], [#, 'N', 174], [#, bsk, 181]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [3, [#, [#, 'Su(tor)278-22', 1], [#, 'CG32982', 1], [#, 'CG15599', 1], [#, 'Su(E1)-A', 1], [#, 'mir-13b-2', 1], [#, 'EP1095', 1], [#, 'S(Sev-CycE)D28', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0284084', 110], [#, 'FBgn0243512', 117], [#, 'FBgn0003205', 141], [#, 'FBgn0003731', 158], [#, 'FBgn0260635', 163], [#, 'FBgn0004647', 174], [#, 'FBgn0000229', 181]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [4, [#, [#, 'FBgn0026335', 1], [#, 'FBgn0052982', 1], [#, 'FBgn0030667', 1], [#, 'FBgn0262767', 1], [#, 'FBgn0262421', 1], [#, 'FBgn0062701', 1], [#, 'FBgn0041783', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [5, [#, [#, enhanceable, 7874], [#, suppressible, 12447]]]). -fb_tsv_pred_stats('most-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0190765', 83], [#, 'FBrf0188528', 88], [#, 'FBrf0190751', 89], [#, 'FBrf0187664', 105], [#, 'FBrf0147055', 149], [#, 'FBrf0199094', 151], [#, 'FBrf0241270', 160]]]). -fb_tsv_pred_stats('less-frequent', gene_genetic_interactions, [6, [#, [#, 'FBrf0221584', 1], [#, 'FBrf0231072', 1], [#, 'FBrf0102734', 1], [#, 'FBrf0190193', 1], [#, 'FBrf0229219', 1], [#, 'FBrf0226148', 1], [#, 'FBrf0208690', 1]]]). -fb_tsv_pred_stats('num-columns', gene_groups_HGNC, [4]). -fb_tsv_pred_stats('duplicated-rows', gene_groups_HGNC, [0]). -fb_tsv_pred_stats('total-rows', gene_groups_HGNC, [1711]). -fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [1, 1699, object]). -fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [2, 1699, object]). -fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [3, 1699, object]). -fb_tsv_pred_stats('unique-values', gene_groups_HGNC, [4, 506, object]). -fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', gene_groups_HGNC, [4, '', 1192]). -fb_tsv_pred_stats('missing-values', gene_groups_HGNC, [4, 1192, [#, ''], [#, 1192]]). -fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000526', 2], [#, 'FBgg0000112', 2], [#, 'FBgg0000738', 2], [#, 'FBgg0000588', 2], [#, 'FBgg0000792', 2], [#, 'FBgg0000083', 3], [#, 'FBgg0000279', 3]]]). -fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [1, [#, [#, 'FBgg0000451', 1], [#, 'FBgg0000651', 1], [#, 'FBgg0001307', 1], [#, 'FBgg0000697', 1], [#, 'FBgg0000072', 1], [#, 'FBgg0000437', 1], [#, 'FBgg0001352', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [2, [#, [#, 'SM', 2], [#, 'INX', 2], [#, 'PRDTF', 2], [#, 'CAC-U', 2], [#, 'E2FTF', 2], [#, 'SYT', 3], [#, 'RPD3-HDA1', 3]]]). -fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [2, [#, [#, 'TRNA-C-THR-CGT', 1], [#, 'NAT', 1], [#, 'APAS', 1], [#, 'SLC33', 1], [#, 'ADAM', 1], [#, 'TRNA-C-LEU-TAA', 1], [#, 'N-GH', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [3, [#, [#, 'SPLICEOSOMAL SM PROTEINS', 2], [#, 'INNEXINS', 2], [#, 'PAIRED TRANSCRIPTION FACTORS', 2], [#, 'UNCLASSIFIED CALCIUM CHANNEL-FORMING SUBUNITS', 2], [#, 'E2F TRANSCRIPTION FACTORS', 2], [#, 'SYNAPTOTAGMINS & SYNAPTOTAGMIN-LIKE PROTEINS', 3], [#, 'RPD3/HDA1 LYSINE DEACETYLASES', 3]]]). -fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [3, [#, [#, 'CYTOSOLIC THREONINE-CGT TRANSFER RNAS', 1], [#, 'N-TERMINAL ACETYLTRANSFERASE CATALYTIC SUBUNITS', 1], [#, 'ASPARAGINASES', 1], [#, 'SLC33 ACETYL-COA TRANSPORTERS', 1], [#, 'ADAM METALLOPROTEASES', 1], [#, 'CYTOSOLIC LEUCINE-TAA TRANSFER RNAS', 1], [#, 'N-GLYCOSYL HYDROLASES', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_groups_HGNC, [4, [#, [#, 1281.0, 2], [#, 363.0, 2], [#, 434.0, 2], [#, 816.0, 2], [#, 1254.0, 2], [#, 669.0, 2]]]). -fb_tsv_pred_stats('less-frequent', gene_groups_HGNC, [4, [#, [#, 346.0, 1], [#, 1654.0, 1], [#, 1585.0, 1], [#, 1419.0, 1], [#, 2154.0, 1], [#, 262.0, 1], [#, 1027.0, 1]]]). -fb_tsv_pred_stats('num-columns', gene_group_data, [7]). -fb_tsv_pred_stats('duplicated-rows', gene_group_data, [0]). -fb_tsv_pred_stats('total-rows', gene_group_data, [10957]). -fb_tsv_pred_stats('unique-values', gene_group_data, [1, 1629, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [2, 1629, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [3, 1629, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [4, 389, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [5, 389, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [6, 8251, object]). -fb_tsv_pred_stats('unique-values', gene_group_data, [7, 8251, object]). -fb_tsv_pred_stats('missing-values', gene_group_data, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_group_data, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_group_data, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', gene_group_data, [4, '', 1106]). -fb_tsv_pred_stats('missing-values', gene_group_data, [4, 1106, [#, ''], [#, 1106]]). -fb_tsv_pred_stats('null-value-count', gene_group_data, [5, '', 1106]). -fb_tsv_pred_stats('missing-values', gene_group_data, [5, 1106, [#, ''], [#, 1106]]). -fb_tsv_pred_stats('null-value-count', gene_group_data, [6, '', 405]). -fb_tsv_pred_stats('missing-values', gene_group_data, [6, 405, [#, ''], [#, 405]]). -fb_tsv_pred_stats('null-value-count', gene_group_data, [7, '', 405]). -fb_tsv_pred_stats('missing-values', gene_group_data, [7, 405, [#, ''], [#, 405]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [1, [#, [#, 'FBgg0000128', 98], [#, 'FBgg0001176', 105], [#, 'FBgg0001186', 106], [#, 'FBgg0001078', 114], [#, 'FBgg0000097', 120], [#, 'FBgg0001077', 136], [#, 'FBgg0000732', 272]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [1, [#, [#, 'FBgg0001756', 1], [#, 'FBgg0000834', 1], [#, 'FBgg0001677', 1], [#, 'FBgg0000396', 1], [#, 'FBgg0000921', 1], [#, 'FBgg0000512', 1], [#, 'FBgg0000662', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [2, [#, [#, 'E3-RING-U', 98], [#, 'CPR', 105], [#, 'CBD', 106], [#, 'SP-T', 114], [#, 'OR', 120], [#, 'S1A-NPH', 136], [#, 'ZF-C2H2', 272]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [2, [#, [#, 'UFM1', 1], [#, 'GH47', 1], [#, 'GH99', 1], [#, 'TRNA-C-ASP', 1], [#, 'MDH', 1], [#, 'KCN', 1], [#, 'SLC7', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [3, [#, [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 98], [#, 'CPR CUTICLE PROTEIN FAMILY', 105], [#, 'CHITIN BINDING DOMAIN-CONTAINING PROTEINS', 106], [#, 'S1A SERINE PROTEASES - TRYPSIN-LIKE', 114], [#, 'ODORANT RECEPTORS', 120], [#, 'S1A NON-PEPTIDASE HOMOLOGS', 136], [#, 'C2H2 ZINC FINGER TRANSCRIPTION FACTORS', 272]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [3, [#, [#, 'UFM1 PROTEINS', 1], [#, 'CLASS I ALPHA-MANNOSIDASES', 1], [#, 'ENDO-ALPHA MANNOSIDASES', 1], [#, 'CYTOSOLIC ASPARTIC ACID TRANSFER RNAS', 1], [#, 'MALATE DEHYDROGENASES', 1], [#, 'POTASSIUM CHANNEL SUBUNITS', 1], [#, 'SLC7 FAMILY OF AMINO ACID TRANSPORTERS', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [4, [#, [#, 'FBgg0001178', 162], [#, 'FBgg0001841', 178], [#, 'FBgg0001076', 190], [#, 'FBgg0000729', 277], [#, 'FBgg0000537', 318], [#, 'FBgg0000686', 392]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [4, [#, [#, 'FBgg0001357', 1], [#, 'FBgg0000408', 1], [#, 'FBgg0001039', 1], [#, 'FBgg0001844', 2], [#, 'FBgg0001637', 2], [#, 'FBgg0000582', 2], [#, 'FBgg0000130', 2]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [5, [#, [#, 'CP', 162], [#, 'OXPHOS-V', 178], [#, 'S1AP', 190], [#, 'ZN-TF', 277], [#, 'SPL-INT', 318], [#, 'SLC', 392]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [5, [#, [#, 'ETH', 1], [#, 'TRNA-C-SEC', 1], [#, 'OXRPX', 1], [#, 'PSM-G', 2], [#, 'LADAC', 2], [#, 'IC', 2], [#, 'RP', 2]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [6, [#, [#, 'FBgn0261933', 10], [#, 'FBgn0000426', 13], [#, 'FBgn0261790', 13], [#, 'FBgn0261791', 13], [#, 'FBgn0023167', 13], [#, 'FBgn0262601', 13]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [6, [#, [#, 'FBgn0002565', 1], [#, 'FBgn0052671', 1], [#, 'FBgn0262518', 1], [#, 'FBgn0037364', 1], [#, 'FBgn0005586', 1], [#, 'FBgn0015791', 1], [#, 'FBgn0015795', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_group_data, [7, [#, [#, 'SmD1', 10], [#, 'SmF', 13], [#, 'SmE', 13], [#, 'SNRPG', 13], [#, 'SmD3', 13], [#, 'SmB', 13]]]). -fb_tsv_pred_stats('less-frequent', gene_group_data, [7, [#, [#, 'Lsp2', 1], [#, 'Rab9Fa', 1], [#, 'Rab8', 1], [#, 'Rab23', 1], [#, 'Rab3', 1], [#, 'Rab14', 1], [#, 'Rab7', 1]]]). -fb_tsv_pred_stats('num-columns', gene_map_table, [6]). -fb_tsv_pred_stats('duplicated-rows', gene_map_table, [0]). -fb_tsv_pred_stats('total-rows', gene_map_table, [245829]). -fb_tsv_pred_stats('unique-values', gene_map_table, [1, 542, object]). -fb_tsv_pred_stats('unique-values', gene_map_table, [2, 245829, object]). -fb_tsv_pred_stats('unique-values', gene_map_table, [3, 245829, object]). -fb_tsv_pred_stats('unique-values', gene_map_table, [4, 1716, object]). -fb_tsv_pred_stats('unique-values', gene_map_table, [5, 8138, object]). -fb_tsv_pred_stats('unique-values', gene_map_table, [6, 17721, object]). -fb_tsv_pred_stats('missing-values', gene_map_table, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_map_table, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_map_table, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', gene_map_table, [4, '', 208914]). -fb_tsv_pred_stats('missing-values', gene_map_table, [4, 208914, [#, ''], [#, 208914]]). -fb_tsv_pred_stats('null-value-count', gene_map_table, [5, '', 222613]). -fb_tsv_pred_stats('null-value-count', gene_map_table, [5, -, 105]). -fb_tsv_pred_stats('missing-values', gene_map_table, [5, 222718, [#, '', -], [#, 222613, 105]]). -fb_tsv_pred_stats('null-value-count', gene_map_table, [6, '', 227926]). -fb_tsv_pred_stats('missing-values', gene_map_table, [6, 227926, [#, ''], [#, 227926]]). -fb_tsv_pred_stats('most-frequent', gene_map_table, [1, [#, [#, 'Dper', 18137], [#, 'Dana', 18521], [#, 'Dwil', 18542], [#, 'Dyak', 19506], [#, 'Dsim', 20501], [#, 'Dpse', 22460], [#, 'Dmel', 31755]]]). -fb_tsv_pred_stats('less-frequent', gene_map_table, [1, [#, [#, 'Dmos', 1], [#, 'Dsch', 1], [#, 'Dprg', 1], [#, 'Dpme', 1], [#, 'Dmds', 1], [#, 'Dbis', 1], [#, 'Dsut', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_map_table, [4, [#, [#, '1-', 1161], [#, 'XL-', 1883], [#, '4-', 2182], [#, 'XR-', 2261], [#, '3-', 3567], [#, '2-', 4139]]]). -fb_tsv_pred_stats('less-frequent', gene_map_table, [4, [#, [#, '2-[90]', 1], [#, '3-50-62', 1], [#, '1-38.4', 1], [#, '3-[76]', 1], [#, '3-[25]', 1], [#, '1-[61]', 1], [#, '2-[24]', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_map_table, [5, [#, [#, '61-100', 47], [#, '39D5-39D5', 47], [#, '21E2-21E2', 73], [#, '56E2-56E2', 123], [#, '21-60', 132]]]). -fb_tsv_pred_stats('less-frequent', gene_map_table, [5, [#, [#, '92A2-92A3', 1], [#, '18E5-18F1', 1], [#, '78A2-78B1', 1], [#, '95C5-95C8', 1], [#, '18B8-18B8', 1], [#, '61F2-61F3', 1], [#, '53A2-53A3', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_map_table, [6, [#, [#, '2R:10351533..10352161(-1)', 3], [#, '2R:13209809..13212237(-1)', 3], [#, '3R:21365609..21368279(1)', 3], [#, '2R:21667541..21669916(-1)', 4], [#, '3R:13813109..13814648(1)', 4], [#, '3R:21355692..21359768(-1)', 5]]]). -fb_tsv_pred_stats('less-frequent', gene_map_table, [6, [#, [#, '3R:19373757..19374789(-1)', 1], [#, '3L:11574764..11577044(-1)', 1], [#, '3L:11572797..11574663(-1)', 1], [#, 'X:20178755..20179729(-1)', 1], [#, '3L:10692530..10693167(-1)', 1], [#, '3R:25493481..25495161(-1)', 1], [#, 'X:20186630..20187604(-1)', 1]]]). -fb_tsv_pred_stats('num-columns', gene_rpkm_matrix, [170]). -fb_tsv_pred_stats('duplicated-rows', gene_rpkm_matrix, [0]). -fb_tsv_pred_stats('total-rows', gene_rpkm_matrix, [17747]). -fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [1, 17747, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [2, 17747, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_matrix, [3, 11214, object]). -fb_tsv_pred_stats('num-columns', gene_rpkm_report, [12]). -fb_tsv_pred_stats('duplicated-rows', gene_rpkm_report, [0]). -fb_tsv_pred_stats('total-rows', gene_rpkm_report, [2928711]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [1, 1, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [2, 17748, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [3, 17748, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [4, 7, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [5, 7, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [6, 166, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [7, 166, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [8, 5113, int64]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [9, 8, int64]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [10, 6776, object]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [11, 5412, int64]). -fb_tsv_pred_stats('unique-values', gene_rpkm_report, [12, 2, object]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [5, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [6, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [8, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [9, 0, [], []]). -fb_tsv_pred_stats('null-value-count', gene_rpkm_report, [10, '', 60536]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [10, 60536, [#, ''], [#, 60536]]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [11, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_rpkm_report, [12, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [1, [#, [#, 'Dmel_R6.53', 2928711]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0053410', 166], [#, 'FBgn0053411', 166], [#, 'FBgn0053412', 166], [#, 'FBgn0053413', 166], [#, 'FBgn0053414', 166], [#, 'FBgn0053408', 166], [#, 'FBgn0038694', 166]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [2, [#, [#, 'FBgn0267595', 40], [#, 'FBgn0013691', 42], [#, 'FBgn0013673', 42], [#, 'FBgn0013701', 42], [#, 'FBgn0013700', 42], [#, 'FBgn0013674', 42], [#, 'FBgn0013675', 42]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [3, [#, [#, '5SrRNA:CR33410', 166], [#, '5SrRNA:CR33411', 166], [#, '5SrRNA:CR33412', 166], [#, '5SrRNA:CR33413', 166], [#, '5SrRNA:CR33414', 166], [#, '5SrRNA:CR33408', 166], [#, 'CG5217', 166]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [3, [#, [#, 'CR45933', 40], [#, 'mt:tRNA:Asp-GTC', 42], [#, 'mt:ATPase8', 42], [#, 'mt:tRNA:Asn-GTT', 42], [#, 'mt:tRNA:Met-CAT', 42], [#, 'mt:CoI', 42], [#, 'mt:CoII', 42]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [4, [#, [#, 'FBlc0003342', 35368], [#, 'FBlc0000060', 211421], [#, 'FBlc0000260', 424996], [#, 'FBlc0000236', 477917], [#, 'FBlc0000206', 513566], [#, 'FBlc0000085', 528553], [#, 'FBlc0003498', 736890]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [5, [#, [#, 'Knoblich_Neural_Cell_RNA-Seq', 35368], [#, 'BCM_1_RNAseq', 211421], [#, 'modENCODE_mRNA-Seq_cell.B', 424996], [#, 'modENCODE_mRNA-Seq_treatments', 477917], [#, 'modENCODE_mRNA-Seq_tissues', 513566], [#, 'modENCODE_mRNA-Seq_development', 528553], [#, 'FlyAtlas2', 736890]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0000235', 17711], [#, 'FBlc0000234', 17711], [#, 'FBlc0000233', 17711], [#, 'FBlc0000229', 17711], [#, 'FBlc0000217', 17711], [#, 'FBlc0000251', 17711], [#, 'FBlc0000250', 17711]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [6, [#, [#, 'FBlc0003639', 17545], [#, 'FBlc0003637', 17545], [#, 'FBlc0003636', 17545], [#, 'FBlc0003635', 17545], [#, 'FBlc0003634', 17545], [#, 'FBlc0003633', 17545], [#, 'FBlc0003632', 17545]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [7, [#, [#, mE_mRNA_P8_fat, 17711], [#, mE_mRNA_WPP_saliv, 17711], [#, mE_mRNA_WPP_fat, 17711], [#, mE_mRNA_L3_Wand_imag_disc, 17711], [#, mE_mRNA_A_MateM_4d_testis, 17711], [#, mE_mRNA_A_4d_Paraquat_10mM, 17711], [#, mE_mRNA_A_4d_Paraquat_5mM, 17711]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [7, [#, [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum', 17545], [#, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum', 17545]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [8, [#, [#, 6, 67267], [#, 5, 76452], [#, 4, 89006], [#, 3, 106255], [#, 2, 139559], [#, 1, 256023], [#, 0, 1229976]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [8, [#, [#, 4755, 1], [#, 3974, 1], [#, 2566, 1], [#, 3991, 1], [#, 10214, 1], [#, 15694, 1], [#, 3308, 1]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [9, [#, [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837], [#, 0, 1229976]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [9, [#, [#, 7, 12019], [#, 6, 94410], [#, 5, 101416], [#, 4, 187170], [#, 3, 362858], [#, 2, 439025], [#, 1, 501837]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [10, [#, [#, 45.0, 5314], [#, 72, 7512], [#, 44.0, 8878], [#, 72.0, 11038], [#, 73, 11536], [#, 135.0, 17264]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [10, [#, [#, 2235, 15], [#, 939, 42], [#, 667, 42], [#, 155, 42], [#, 1536, 42], [#, 354, 42], [#, 290, 42]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [11, [#, [#, 595, 4980], [#, 74, 5098], [#, 45, 5872], [#, 44, 9390], [#, 135, 17014], [#, 73, 17014], [#, 72, 18668]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [11, [#, [#, 62, 42], [#, 63, 42], [#, 16924, 82], [#, 230, 82], [#, 3528, 82], [#, 193, 82], [#, 16779, 84]]]). -fb_tsv_pred_stats('most-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). -fb_tsv_pred_stats('less-frequent', gene_rpkm_report, [12, [#, [#, 'Total', 73206], [#, 'Unique', 2855505]]]). -fb_tsv_pred_stats('num-columns', gene_snapshots, [5]). -fb_tsv_pred_stats('duplicated-rows', gene_snapshots, [0]). -fb_tsv_pred_stats('total-rows', gene_snapshots, [13985]). -fb_tsv_pred_stats('unique-values', gene_snapshots, [1, 13985, object]). -fb_tsv_pred_stats('unique-values', gene_snapshots, [2, 13985, object]). -fb_tsv_pred_stats('unique-values', gene_snapshots, [3, 7833, object]). -fb_tsv_pred_stats('unique-values', gene_snapshots, [4, 61, object]). -fb_tsv_pred_stats('unique-values', gene_snapshots, [5, 3652, object]). -fb_tsv_pred_stats('missing-values', gene_snapshots, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_snapshots, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', gene_snapshots, [3, -, 6153]). -fb_tsv_pred_stats('missing-values', gene_snapshots, [3, 6153, [#, -], [#, 6153]]). -fb_tsv_pred_stats('null-value-count', gene_snapshots, [4, -, 10334]). -fb_tsv_pred_stats('missing-values', gene_snapshots, [4, 10334, [#, -], [#, 10334]]). -fb_tsv_pred_stats('missing-values', gene_snapshots, [5, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gene_snapshots, [3, [#, [#, 'Carbonic anhydrase 2', 1], [#, 'PRL-1 phosphatase', 1], [#, tricornered, 1], [#, kurz, 1], [#, 'beaten path IV', 1], [#, 'male sterile (2) 35Ci', 1]]]). -fb_tsv_pred_stats('less-frequent', gene_snapshots, [3, [#, [#, 'Receptor expression enhancing protein A', 1], [#, tricornered, 1], [#, 'PRL-1 phosphatase', 1], [#, 'Carbonic anhydrase 2', 1], [#, 'sugar transporter 3', 1], [#, spt4, 1], [#, 'Imitation SWI', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_snapshots, [4, [#, [#, 20190919.0, 144], [#, 20190926.0, 198], [#, 20190912.0, 206], [#, 20190321.0, 222], [#, 20190307.0, 862], [#, 20190314.0, 1067]]]). -fb_tsv_pred_stats('less-frequent', gene_snapshots, [4, [#, [#, 20220901.0, 1], [#, 20200924.0, 1], [#, 20200730.0, 1], [#, 20200709.0, 1], [#, 20190725.0, 1], [#, 20210204.0, 1], [#, 20160630.0, 1]]]). -fb_tsv_pred_stats('most-frequent', gene_snapshots, [5, [#, [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'dachshund (dac) encodes a transcriptional cofactor that physically interacts with several other retinal determination proteins, including those encoded by eya and so, and regulates eye, leg, gonad, and brain development.', 1], [#, 'Contributions welcome.', 10334]]]). -fb_tsv_pred_stats('less-frequent', gene_snapshots, [5, [#, [#, 'Down syndrome cell adhesion molecule 2 (Dscam2) encodes a transmembrane protein. Its alternative splicing produces two biochemically distinct homophilic binding proteins expressed in different cells. It can mediate both repulsion and adhesion between neurons and contributes to boundary formation, neurite targeting and synapse formation in the brain.', 1], [#, 'prenyl protease type I (ste24a) encodes a protein that, along with the products of ste24b and ste24c, are paralogous (tandemly duplicated) type I prenyl proteases.', 1], [#, 'Lsm10 (Lsm10) encodes a core component of the U7 snRNP complex, which functions in 3\' end processing of the non-polyadenylated, replication-dependent histone mRNAs. The product of Lsm10 is part of the heptameric Sm ring complex that binds directly to U7 snRNA. It replaces the protein encoded by SmD1 in the canonical heptameric Sm protein ring that binds spliceosomal snRNAs.', 1], [#, 'Apoptosis inducing factor (AIF) encodes a phylogenetically conserved redox-active flavoprotein that contributes to cell death and oxidative phosphorylation in mitochondria.', 1], [#, 'lectin-24Db (lectin-24Db) encodes a protein that interacts specifically with fucose and mannose.', 1], [#, 'stumps (stumps) encodes a fibroblast growth factor (FGF) scaffolding protein. Upon FGF receptor activation, it mediates the recruitment of the phosphatase encoded by csw, which is essential for the activation of the MAPK pathway.', 1], [#, 'expanded (ex) encodes a FERM-domain containing protein that localizes to apical cell-cell junctions, where it promotes Hippo signaling by physically interacting with multiple Hippo pathway components. Through its regulation of Hippo signaling, the product of ex functions as an inhibitor of growth.', 1]]]). -fb_tsv_pred_stats('num-columns', ncRNA_genes_, [2]). -fb_tsv_pred_stats('duplicated-rows', ncRNA_genes_, [145327]). -fb_tsv_pred_stats('total-rows', ncRNA_genes_, [212303]). -fb_tsv_pred_stats('unique-values', ncRNA_genes_, [1, 66975, object]). -fb_tsv_pred_stats('unique-values', ncRNA_genes_, [2, 3, object]). -fb_tsv_pred_stats('missing-values', ncRNA_genes_, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', ncRNA_genes_, [2, '', 21161]). -fb_tsv_pred_stats('missing-values', ncRNA_genes_, [2, 21161, [#, ''], [#, 21161]]). -fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [1, [#, [#, ' \\gca_accession\\: \\GCA_000001215.4\\, ', 4566], [#, ' \\exons\\: [', 4566], [#, ' ', 4566], [#, ' }', 5311], [#, ' ', 5534], [#, ' ', 6494], [#, ' ], ', 13710]]]). -fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\endPosition\\: 23114377', 1], [#, ' \\startPosition\\: 23113577, ', 1], [#, ' \\endPosition\\: 23114049', 1], [#, ' \\geneId\\: \\FLYBASE:FBgn0266009\\, ', 1], [#, ' \\symbol\\: \\lncRNA:CR44782\\, ', 1], [#, ' \\url\\: \\http://flybase.org/reports/FBgn0266009.html\\, ', 1]]]). -fb_tsv_pred_stats('most-frequent', ncRNA_genes_, [2, [#, [#, '}RR42320\\', 1], [#, '}RR42263\\', 1]]]). -fb_tsv_pred_stats('less-frequent', ncRNA_genes_, [2, [#, [#, '}RR42263\\', 1], [#, '}RR42320\\', 1]]]). -fb_tsv_pred_stats('num-columns', pathway_group_data, [7]). -fb_tsv_pred_stats('duplicated-rows', pathway_group_data, [0]). -fb_tsv_pred_stats('total-rows', pathway_group_data, [992]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [1, 71, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [2, 71, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [3, 71, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [4, 18, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [5, 18, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [6, 658, object]). -fb_tsv_pred_stats('unique-values', pathway_group_data, [7, 658, object]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', pathway_group_data, [4, '', 17]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [4, 17, [#, ''], [#, 17]]). -fb_tsv_pred_stats('null-value-count', pathway_group_data, [5, '', 17]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [5, 17, [#, ''], [#, 17]]). -fb_tsv_pred_stats('null-value-count', pathway_group_data, [6, '', 17]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [6, 17, [#, ''], [#, 17]]). -fb_tsv_pred_stats('null-value-count', pathway_group_data, [7, '', 17]). -fb_tsv_pred_stats('missing-values', pathway_group_data, [7, 17, [#, ''], [#, 17]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [1, [#, [#, 'FBgg0001196', 38], [#, 'FBgg0001069', 42], [#, 'FBgg0000891', 42], [#, 'FBgg0000981', 43], [#, 'FBgg0000916', 44], [#, 'FBgg0000892', 45], [#, 'FBgg0000980', 56]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [1, [#, [#, 'FBgg0000941', 1], [#, 'FBgg0001093', 1], [#, 'FBgg0000917', 1], [#, 'FBgg0000910', 1], [#, 'FBgg0000975', 1], [#, 'FBgg0000958', 1], [#, 'FBgg0000889', 1]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [2, [#, [#, 'IMD-N', 38], [#, 'NTCH-P', 42], [#, 'WNT-TCFN', 42], [#, 'HH-SMOP', 43], [#, 'SWH-N', 44], [#, 'WNT-TCFP', 45], [#, 'HH-SMON', 56]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [2, [#, [#, 'SEVL', 1], [#, 'ACT-SMAD2', 1], [#, 'SWH', 1], [#, 'INS', 1], [#, 'PVR-P', 1], [#, 'EGFR-RTK', 1], [#, 'WNT-TCF', 1]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [3, [#, [#, 'Negative Regulators of Imd Signaling Pathway', 38], [#, 'Positive Regulators of Notch Signaling Pathway', 42], [#, 'Negative Regulators of Wnt-TCF Signaling Pathway', 42], [#, 'Positive Regulators of Hedgehog Signaling Pathway', 43], [#, 'Negative Regulators of Hippo Signaling Pathway', 44], [#, 'Positive Regulators of Wnt-TCF Signaling Pathway', 45], [#, 'Negative Regulators of Hedgehog Signaling Pathway', 56]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [3, [#, [#, 'Sevenless Signaling Pathway', 1], [#, 'Activin Signaling Pathway', 1], [#, 'Hippo Signaling Pathway', 1], [#, 'Insulin-like Receptor Signaling Pathway', 1], [#, 'Positive Regulators of Pvr Signaling Pathway', 1], [#, 'EGFR Signaling Pathway', 1], [#, 'Wnt-TCF Signaling Pathway', 1]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [4, [#, [#, 'FBgg0000910', 77], [#, 'FBgg0001059', 79], [#, 'FBgg0000958', 83], [#, 'FBgg0000917', 87], [#, 'FBgg0001068', 89], [#, 'FBgg0000889', 100], [#, 'FBgg0000978', 108]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [4, [#, [#, 'FBgg0001792', 6], [#, 'FBgg0001093', 14], [#, 'FBgg0001560', 23], [#, 'FBgg0000941', 30], [#, 'FBgg0000934', 31], [#, 'FBgg0000967', 35]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [5, [#, [#, 'INS', 77], [#, 'TL-CAN', 79], [#, 'EGFR-RTK', 83], [#, 'SWH', 87], [#, 'NTCH', 89], [#, 'WNT-TCF', 100], [#, 'HH-SMO', 108]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [5, [#, [#, 'CGAS-STING', 6], [#, 'ACT-SMAD2', 14], [#, 'TNF', 23], [#, 'SEVL', 30], [#, 'TORS', 31], [#, 'FGFR', 35]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [6, [#, [#, 'FBgn0010269', 6], [#, 'FBgn0004177', 6], [#, 'FBgn0262432', 6], [#, 'FBgn0283468', 6], [#, 'FBgn0003256', 6], [#, 'FBgn0004638', 6]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [6, [#, [#, 'FBgn0262408', 1], [#, 'FBgn0027539', 1], [#, 'FBgn0001987', 1], [#, 'FBgn0005632', 1], [#, 'FBgn0043364', 1], [#, 'FBgn0000395', 1], [#, 'FBgn0261952', 1]]]). -fb_tsv_pred_stats('most-frequent', pathway_group_data, [7, [#, [#, 'Dsor1', 6], [#, mts, 6], [#, 'mir-8', 6], [#, slmb, 6], [#, rl, 6], [#, drk, 6]]]). -fb_tsv_pred_stats('less-frequent', pathway_group_data, [7, [#, [#, 'mir-5', 1], [#, lili, 1], [#, 'Gli', 1], [#, faf, 1], [#, cbt, 1], [#, 'cv-2', 1], [#, srw, 1]]]). -fb_tsv_pred_stats('num-columns', physical_interactions_mitab, [42]). -fb_tsv_pred_stats('duplicated-rows', physical_interactions_mitab, [0]). -fb_tsv_pred_stats('total-rows', physical_interactions_mitab, [51247]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [1, 4623, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [2, 5257, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [3, 4611, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [4, 5242, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [5, 4623, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [6, 5257, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [7, 111, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [8, 4823, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [9, 4941, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [10, 5, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [11, 4, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [12, 3, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [13, 1, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [14, 51247, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [15, 1, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [16, 1, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [17, 7, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [18, 8, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [19, 9, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [20, 9, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [21, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [22, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [23, 1, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [24, 1, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [25, 34325, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [26, 1037, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [27, 1040, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [28, 19939, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [29, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [30, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [31, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [32, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [33, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [34, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [35, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [36, 3, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [37, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [38, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [39, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [40, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [41, 2, object]). -fb_tsv_pred_stats('unique-values', physical_interactions_mitab, [42, 2, object]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [3, -, 23]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [3, 23, [#, -], [#, 23]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [4, -, 59]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [4, 59, [#, -], [#, 59]]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [5, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [6, 0, [], []]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [7, -, 231]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [7, 231, [#, -], [#, 231]]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [8, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [9, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [10, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [11, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [12, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [13, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [14, 0, [], []]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [15, -, 51247]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [15, 51247, [#, -], [#, 51247]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [16, -, 51247]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [16, 51247, [#, -], [#, 51247]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [17, -, 50635]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [17, 50635, [#, -], [#, 50635]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [18, -, 50634]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [18, 50634, [#, -], [#, 50634]]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [19, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [20, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [21, 0, [], []]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [22, 0, [], []]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [23, -, 51247]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [23, 51247, [#, -], [#, 51247]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [24, -, 51247]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [24, 51247, [#, -], [#, 51247]]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [25, 0, [], []]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [26, -, 27320]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [26, 27320, [#, -], [#, 27320]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [27, -, 27569]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [27, 27569, [#, -], [#, 27569]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [28, -, 180]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [28, 180, [#, -], [#, 180]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [29, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [29, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [29, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [30, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [30, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [30, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [31, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [31, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [31, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [32, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [32, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [32, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [33, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [33, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [33, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [34, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [34, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [35, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [35, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [36, '', 1]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [36, 1, [#, ''], [#, 1]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [37, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [37, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [38, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [38, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [39, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [39, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [40, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [40, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [41, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [41, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [42, '', 1]). -fb_tsv_pred_stats('null-value-count', physical_interactions_mitab, [42, -, 51246]). -fb_tsv_pred_stats('missing-values', physical_interactions_mitab, [42, 51247, [#, '', -], [#, 1, 51246]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [1, [#, [#, 'FBgn0001199', 188], [#, 'FBgn0000212', 204], [#, 'FBgn0015239', 209], [#, 'FBgn0003944', 220], [#, 'FBgn0000014', 237], [#, 'FBgn0000283', 259], [#, 'FBgn0003607', 275]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [1, [#, [#, 'FBgn0028412', 1], [#, 'FBgn0003312', 1], [#, 'FBgn0015773', 1], [#, 'FBgn0032644', 1], [#, 'FBgn0033685', 1], [#, 'FBgn0028847', 1], [#, 'FBgn0038880', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [2, [#, [#, 'FBgn0264922', 155], [#, 'FBgn0034970', 159], [#, 'FBgn0037555', 168], [#, 'FBgn0263979', 175], [#, 'FBgn0262866', 178], [#, 'FBgn0262739', 185], [#, 'FBgn0266411', 188]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [2, [#, [#, 'FBgn0036437', 1], [#, 'FBgn0066365', 1], [#, 'FBgn0040773', 1], [#, 'FBgn0019929', 1], [#, 'FBgn0033192', 1], [#, 'FBgn0000147', 1], [#, 'FBgn0052450', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [3, [#, [#, 'entrez gene/locuslink:318847', 188], [#, 'CG5942|entrez gene/locuslink:39744', 204], [#, 'CG7199|entrez gene/locuslink:40378', 209], [#, 'CG10388|entrez gene/locuslink:42034', 220], [#, 'CG10325|entrez gene/locuslink:42037', 237], [#, 'CG6384|entrez gene/locuslink:41848', 259], [#, 'CG8409|entrez gene/locuslink:34119', 275]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [3, [#, [#, 'CG6541|entrez gene/locuslink:34578', 1], [#, 'CG8611|entrez gene/locuslink:32725', 1], [#, 'CG11490|entrez gene/locuslink:33184', 1], [#, 'CG42341|entrez gene/locuslink:40305', 1], [#, 'CG32213|entrez gene/locuslink:317918', 1], [#, 'CG1976|entrez gene/locuslink:43758', 1], [#, 'CG2943|entrez gene/locuslink:40933', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [4, [#, [#, 'CG4494|entrez gene/locuslink:33981', 155], [#, 'CG4005|entrez gene/locuslink:37851', 159], [#, 'CG9638|entrez gene/locuslink:40966', 168], [#, 'CG4236|entrez gene/locuslink:41836', 175], [#, 'CG17596|entrez gene/locuslink:33139', 178], [#, 'CG6671|entrez gene/locuslink:36544', 185], [#, 'CG45051|entrez gene/locuslink:43580', 188]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [4, [#, [#, 'CG5048|entrez gene/locuslink:39598', 1], [#, 'CG4705|entrez gene/locuslink:34540', 1], [#, 'CG11659|entrez gene/locuslink:42352', 1], [#, 'CR43012|entrez gene/locuslink:12798490', 1], [#, 'CG44086|entrez gene/locuslink:34032', 1], [#, 'entrez gene/locuslink:3772715', 1], [#, 'CG12090|entrez gene/locuslink:38176', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [5, [#, [#, 'His3(gene name)', 188], [#, 'brm(gene name)', 204], [#, 'Hr78(gene name)', 209], [#, 'Ubx(gene name)', 220], [#, 'abd-A(gene name)', 237], [#, 'Cp190(gene name)', 259], [#, 'flybase:\\Su(var)205\\(gene name)', 275]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [5, [#, [#, 'Mst33A(gene name)', 1], [#, 'sad(gene name)', 1], [#, 'NetA(gene name)', 1], [#, 'CG5131(gene name)', 1], [#, 'OSCP1(gene name)', 1], [#, 'CG9014(gene name)', 1], [#, 'SIFaR(gene name)', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [6, [#, [#, 'Sumo(gene name)', 155], [#, 'yki(gene name)', 159], [#, 'Ada2b(gene name)', 168], [#, 'Caf1-55(gene name)', 175], [#, 'S6kII(gene name)', 178], [#, 'AGO1(gene name)', 185], [#, 'sima(gene name)', 188]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [6, [#, [#, 'Dnaaf6(gene name)', 1], [#, 'dyl(gene name)', 1], [#, 'COX7C(gene name)', 1], [#, 'Ser7(gene name)', 1], [#, 'Corin(gene name)', 1], [#, 'aurA(gene name)', 1], [#, 'CG32450(gene name)', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0397\\(two hybrid array)', 2067], [#, 'psi-mi:\\MI:0027\\(cosedimentation)', 4090], [#, 'psi-mi:\\MI:0096\\(pull down)', 4202], [#, 'psi-mi:\\MI:0006\\(anti bait coimmunoprecipitation)', 5251], [#, 'psi-mi:\\MI:0018\\(two hybrid)', 5958], [#, 'psi-mi:\\MI:0046\\(experimental knowledge based)', 10942], [#, 'psi-mi:\\MI:0007\\(anti tag coimmunoprecipitation)', 12395]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [7, [#, [#, 'psi-mi:\\MI:0042\\(electron paramagnetic resonance)', 1], [#, 'psi-mi:\\MI:0928\\(filter trap assay)', 1], [#, 'psi-mi:\\MI:1183\\(nuclease footprinting)', 1], [#, 'psi-mi:\\MI:1238\\(mass spectrometry studies of subunit exchange)', 1], [#, 'psi-mi:\\MI:0370\\(tox-r dimerization assay)', 1], [#, 'psi-mi:\\MI:0048\\(filamentous phage display)', 1], [#, 'psi-mi:\\MI:0605\\(enzymatic footprinting)', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [8, [#, [#, 'Friedman A.A. (2011)', 400], [#, 'Rhee D.Y. (2014)', 618], [#, 'Vinayagam A. (2016)', 1808], [#, 'Shokri L. (2019)', 2109], [#, 'Hu Y. (2017.6.13)', 3634], [#, 'Anger A.M. (2013)', 3828], [#, 'Guruharsha K.G. (2011)', 10947]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [8, [#, [#, 'Geng J. (2023)', 1], [#, 'Mellone B.G. (2011)', 1], [#, 'Lim Y.M. (2013)', 1], [#, 'Tran T.A. (2013)', 1], [#, 'Ooe N. (2007)', 1], [#, 'Jiang L. (2007)', 1], [#, 'Nagai H. (2021)', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0224702|pubmed:22028469', 386], [#, 'FBrf0227292|pubmed:25242320', 618], [#, 'FBrf0233454|pubmed:27626673', 1808], [#, 'FBrf0241977|pubmed:30995488', 2109], [#, 'FBrf0235788', 3634], [#, 'FBrf0221476|pubmed:23636399', 3828], [#, 'FBrf0218395|pubmed:22036573', 10947]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [9, [#, [#, 'FBrf0057159|pubmed:1372522', 1], [#, 'FBrf0208241|pubmed:19348939', 1], [#, 'FBrf0204148|pubmed:17900877', 1], [#, 'FBrf0192396|pubmed:17224403', 1], [#, 'FBrf0192282|pubmed:17166919', 1], [#, 'FBrf0130030|pubmed:10801879', 1], [#, 'FBrf0134475|pubmed:11267682', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [10, [#, [#, 'taxid:46015(\\Nucleopolyhedrovirus Autographa californica nucleopolyhedrovirus\\)', 1], [#, 'taxid:10116(\\Rattus norvegicus\\)', 1], [#, 'taxid:11676(\\Lentivirus Human immunodeficiency virus type 1\\)', 2], [#, 'taxid:9606(\\Homo sapiens\\)', 27], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51216]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [11, [#, [#, 'taxid:32644(\\unknown unknown\\)', 1], [#, 'taxid:81077(\\artificial artificial\\)', 3], [#, 'taxid:9606(\\Homo sapiens\\)', 23], [#, 'taxid:7227(\\Drosophila melanogaster\\)', 51220]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [12, [#, [#, 'psi-mi:\\MI:1110\\(predicted interaction)', 3], [#, 'psi-mi:\\MI:0403\\(colocalization)', 10], [#, 'psi-mi:\\MI:0915\\(physical association)', 51234]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [13, [#, [#, 'psi-mi:\\MI:0478\\(flybase)', 51247]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [15, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [15, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [16, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [16, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [17, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 2], [#, 'psi-mi:\\MI:0840\\(stimulator)', 3], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 5], [#, 'psi-mi:\\MI:0501\\(enzyme)', 284], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 313]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [18, [#, [#, 'psi-mi:\\MI:0918\\(donor)', 1], [#, 'psi-mi:\\MI:0919\\(acceptor)', 1], [#, 'psi-mi:\\MI:0840\\(stimulator)', 5], [#, 'psi-mi:\\MI:1343\\(enzyme regulator)', 13], [#, 'psi-mi:\\MI:0586\\(inhibitor)', 13], [#, 'psi-mi:\\MI:0502\\(enzyme target)', 230], [#, 'psi-mi:\\MI:0501\\(enzyme)', 350]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291], [#, 'psi-mi:\\MI:0498\\(prey)', 15993], [#, 'psi-mi:\\MI:0496\\(bait)', 16786]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [19, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 11], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 33], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 83], [#, 'psi-mi:\\MI:0503\\(self)', 346], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5702], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12291]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290], [#, 'psi-mi:\\MI:0498\\(prey)', 15747], [#, 'psi-mi:\\MI:0496\\(bait)', 17033]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [20, [#, [#, 'psi-mi:\\MI:0898\\(putative self)', 2], [#, 'psi-mi:\\MI:0684\\(ancillary)', 15], [#, 'psi-mi:\\MI:0584\\(fluorescence acceptor)', 50], [#, 'psi-mi:\\MI:0583\\(fluorescence donor)', 66], [#, 'psi-mi:\\MI:0503\\(self)', 345], [#, 'psi-mi:\\MI:0497\\(neutral component)', 5699], [#, 'psi-mi:\\MI:0499\\(unspecified role)', 12290]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [21, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 1861], [#, 'psi-mi:\\MI:0326\\(protein)', 49386]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [22, [#, [#, 'psi-mi:\\MI:0320\\(ribonucleic acid)', 2024], [#, 'psi-mi:\\MI:0326\\(protein)', 49223]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [23, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [23, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [24, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [24, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000071265', 36], [#, 'FBig0000095560', 38], [#, 'FBig0000097702', 38], [#, 'FBig0000095735', 38], [#, 'FBig0000086228', 40], [#, 'FBig0000067005', 44], [#, 'FBig0000017021', 46]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [25, [#, [#, 'FBig0000000059', 1], [#, 'FBig0000108279', 1], [#, 'FBig0000108278', 1], [#, 'FBig0000108277', 1], [#, 'FBig0000108275', 1], [#, 'FBig0000108274', 1], [#, 'FBig0000108273', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\HA tag\\', 1318], [#, 'comment:\\GFP tag\\', 1380], [#, 'comment:\\GST tag\\', 1618], [#, 'comment:\\FLAG tag\\', 1993], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3270], [#, 'comment:\\fused to GAL4 activation domain\\', 3379]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [26, [#, [#, 'comment:\\45 unique peptides identified\\', 1], [#, 'comment:\\mRFP tag\\', 1], [#, 'comment:\\MBP tag, [3]H label\\', 1], [#, 'comment:\\AU5 tag\\', 1], [#, 'comment:\\fused to biotin\\', 1], [#, 'comment:\\isoform RA/D specific\\|comment:\\biotin label\\', 1], [#, 'comment:\\FLAG\\|comment:\\myc\\', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\TAP tag\\', 1285], [#, 'comment:\\HA tag\\', 1378], [#, 'comment:\\GST tag\\', 1497], [#, 'comment:\\FLAG tag\\', 2115], [#, 'comment:\\fused to GAL4 activation domain\\', 3309], [#, 'comment:\\fused to GAL4 DNA-binding domain\\', 3313]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [27, [#, [#, 'comment:\\XL isoform specific\\', 1], [#, 'comment:\\His,SUMO tag\\', 1], [#, 'comment:\\SAINT score = 0.9673\\', 1], [#, 'comment:\\fused to &bgr;-gal\\', 1], [#, 'comment:\\Myc tag\\|comment:\\RFP tag\\', 1], [#, 'comment:\\38, 33 peptide counts\\', 1], [#, 'comment:\\99 peptide counts\\', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.\\', 984], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.\\', 1083], [#, 'comment:\\Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.\\', 1723], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pooled)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein.(Pairwise.)\\|comment:\\MORATORIUM:This data was made available \\\'pre-publication\\\' and, as such, its use is subject to the specific limitations described in FBrf0235788 for the period of 12 months. Moratorium expires on June 13, 2018.\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 1817], [#, 'comment:\\Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).\\|comment:\\Two-hybrid system: yeast GAL4-BD/GAL4-AD\\', 2713], [#, 'comment:\\Source was embryos of wild-type fly line; proteins produced from endogenous genes.\\|comment:\\The structure of the Drosophila 80S ribosome with accessory proteins solved by cryo-EM. Complex captured as 3828 pairwise interactions which do not necessarily reflect direct contact.\\', 3403]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [28, [#, [#, 'comment:\\HGScore = 131.41663\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey produced as a recombinant fusion protein in bacterial system.\\|comment:\\@BicD@ binds to GTP-bound @Rab6@, not GDP-bound @Rab6@.\\|comment:\\Purified recombinant proteins were tested for interaction.\\|comment:\\There is overlap of @egl@ and @Rab6@ binding sites in @BicD@.\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from S2 cell extract (endogenous gene).\\|comment:\\Constitutively active (GTP-locked) form of Rab was used for pull down. Parallel pull downs performed for several Rabs proteins in this study. Yield was measured using spectral counts. A specificity score (S score) was calculated, where greater weight was given to interactions seen with fewer baits.\\|comment:\\Specificity S-score=11.86.\\', 1], [#, 'comment:\\HGScore = 81.66328\\', 1], [#, 'comment:\\Interaction in vitro; bait produced as a recombinant fusion protein in HEK293F cells; prey produced as a recombinant fusion protein in S2 cells.\\|comment:\\Kd = 4.66uM\\', 1], [#, 'comment:\\Source was intact S2 cells; proteins produced from transfected constructs.\\|comment:\\Unlabeled S2 cells expressing @Nrg@ were mixed with dye labeled S2 cells expressing @ed@, and the formation of cell clusters containing both @Nrg@ and @ed@ expressing cells was assayed by immunofluorescence.\\', 1], [#, 'comment:\\HGScore = 61.53800\\', 1]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [29, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [29, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [30, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [30, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [31, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [31, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [32, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [32, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [33, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [33, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [34, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [34, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [35, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [35, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [36, [#, [#, 'FALSE', 16383], [#, 'False', 34863]]]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [37, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [37, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [38, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [38, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [39, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [39, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [40, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [40, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [41, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [41, []]). -fb_tsv_pred_stats('most-frequent', physical_interactions_mitab, [42, []]). -fb_tsv_pred_stats('less-frequent', physical_interactions_mitab, [42, []]). -fb_tsv_pred_stats('num-columns', 'scRNA-Seq_gene_expression', [15]). -fb_tsv_pred_stats('duplicated-rows', 'scRNA-Seq_gene_expression', [0]). -fb_tsv_pred_stats('total-rows', 'scRNA-Seq_gene_expression', [14319160]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [1, 13, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [2, 13, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [3, 89, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [4, 89, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [5, 4, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [6, 2, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [7, 29, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [8, 1690, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [9, 1690, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [10, 271, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [11, 271, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [12, 14295, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [13, 14295, object]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [14, 8174166, float64]). -fb_tsv_pred_stats('unique-values', 'scRNA-Seq_gene_expression', [15, 370225, float64]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [4, 0, [], []]). -fb_tsv_pred_stats('null-value-count', 'scRNA-Seq_gene_expression', [5, '', 5898802]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [5, 5898802, [#, ''], [#, 5898802]]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [6, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [8, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [9, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [10, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [11, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [12, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [13, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [14, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'scRNA-Seq_gene_expression', [15, 0, [], []]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0244302', 177088], [#, 'FBrf0245499', 181659], [#, 'FBrf0246655', 191489], [#, 'FBrf0247762', 424264], [#, 'FBrf0251482', 602328], [#, 'FBrf0249767', 664303], [#, 'FBrf0252876', 11562417]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [1, [#, [#, 'FBrf0248210', 24480], [#, 'FBrf0245988', 38144], [#, 'FBrf0245616', 100103], [#, 'FBrf0248439', 114659], [#, 'FBrf0247435', 116094], [#, 'FBrf0247148', 122132], [#, 'FBrf0244302', 177088]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088], [#, 'Allen et al., 2020, eLife 9: e54074', 181659], [#, 'Cho et al., 2020, Nat. Commun. 11(1): 4483', 191489], [#, '\\00d6zel et al., 2021, Nature 589(7840): 88--95', 424264], [#, 'Baker et al., 2021, Genome Res. 31(10): 1927--1937', 602328], [#, 'Mokashi et al., 2021, Front. Psychiatry 12: 699033', 664303], [#, 'Li et al., 2022, Science 375(6584): eabk2432', 11562417]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [2, [#, [#, 'Shi et al., 2021, Curr. Biol. 31(4): 840--852.e5', 24480], [#, 'Cattenoz et al., 2020, EMBO J. 39(12): e104486', 38144], [#, 'Jevitt et al., 2020, PLoS Biol. 18(4): e3000538', 100103], [#, 'Tauc et al., 2021, eLife 10: e62250', 114659], [#, 'Zappia et al., 2020, EMBO Rep. 21(10): e49555', 116094], [#, 'Rust et al., 2020, Nat. Commun. 11(1): 5628', 122132], [#, 'Brunet Avalos et al., 2019, eLife 8: e50354', 177088]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0005662', 424264], [#, 'FBlc0004310', 462839], [#, 'FBlc0003849', 485904], [#, 'FBlc0004788', 587089], [#, 'FBlc0004142', 1324076], [#, 'FBlc0004624', 1374828], [#, 'FBlc0005151', 1787268]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [3, [#, [#, 'FBlc0004140', 11271], [#, 'FBlc0004136', 11650], [#, 'FBlc0004622', 12336], [#, 'FBlc0004618', 12504], [#, 'FBlc0005149', 13127], [#, 'FBlc0005145', 13237], [#, 'FBlc0003731', 16857]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2021_Ozel_ADM1_seq_clustering, 424264], [#, scRNAseq_2022_FCA_MALE_HEAD_seq_clustering, 462839], [#, scRNAseq_2022_FCA_FEMALE_HEAD_seq_clustering, 485904], [#, scRNAseq_2022_FCA_MIXED_HEAD_seq_clustering, 587089], [#, scRNAseq_2022_FCA_FEMALE_FULL_seq_clustering, 1324076], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering, 1374828], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering, 1787268]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [4, [#, [#, scRNAseq_2022_FCA_FEMALE_IPC_seq_clustering, 11271], [#, scRNAseq_2022_FCA_FEMALE_CC_seq_clustering, 11650], [#, scRNAseq_2022_FCA_MALE_IPC_seq_clustering, 12336], [#, scRNAseq_2022_FCA_MALE_CC_seq_clustering, 12504], [#, scRNAseq_2022_FCA_MIXED_IPC_seq_clustering, 13127], [#, scRNAseq_2022_FCA_MIXED_CC_seq_clustering, 13237], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering, 16857]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [5, [#, [#, mixed, 445126], [#, female, 3955616], [#, male, 4019616]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [6, [#, [#, 'larval stage', 522815], [#, 'adult stage', 13796345]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, antenna, 537963], [#, ovary, 556379], [#, 'adult brain', 602328], [#, brain, 664303], [#, adult, 1157530], [#, 'adult head', 1535832], [#, mixed, 4486172]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [7, [#, [#, 'adult pars intercerebralis', 36734], [#, 'adult corpus cardiacum', 37391], [#, 'embryonic/larval hemolymph', 101153], [#, 'adult midgut', 114659], [#, 'wing disc', 116094], [#, 'adult abdomen', 120557], [#, 'primary lobe of embryonic/larval lymph gland', 128480]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0004677', 13868], [#, 'FBlc0005192', 13876], [#, 'FBlc0004567', 13941], [#, 'FBlc0005094', 13941], [#, 'FBlc0004713', 13953], [#, 'FBlc0005247', 13956], [#, 'FBlc0005205', 13958]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [8, [#, [#, 'FBlc0003842', 762], [#, 'FBlc0003779', 765], [#, 'FBlc0003749', 872], [#, 'FBlc0003748', 1065], [#, 'FBlc0003833', 1100], [#, 'FBlc0003843', 2232], [#, 'FBlc0003733', 2255]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_fat_cells, 13868], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_neurons, 13876], [#, scRNAseq_2022_FCA_MALE_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MIXED_TESTIS_seq_clustering_spermatocytes, 13941], [#, scRNAseq_2022_FCA_MALE_FULL_seq_clustering_spermatocytes, 13953], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_spermatocytes, 13956], [#, scRNAseq_2022_FCA_MIXED_FULL_seq_clustering_fat_cells, 13958]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [9, [#, [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_imaginal_tracheoblasts, 762], [#, scRNAseq_2020_Cho_NI96HL_seq_clustering_lamellocytes, 765], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_lamellocytes, 872], [#, scRNAseq_2020_Cho_NI72LG_seq_clustering_adipohemocytes, 1065], [#, scRNAseq_2020_Zappia_mCherryRNAi_seq_clustering_imaginal_tracheoblasts, 1100], [#, scRNAseq_2020_Zappia_AmaRNAi_seq_clustering_SOP_cells, 2232], [#, scRNAseq_2020_Cattenoz_NI_seq_clustering_lamellocytes, 2255]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003185', 202803], [#, 'FBbt00005040', 281977], [#, 'FBbt00047095', 365976], [#, 'FBbt00058143', 371275], [#, 'FBbt00058238', 373508], [#, 'FBbt00049949', 395912], [#, 'FBbt00058230', 396390]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [10, [#, [#, 'FBbt00003844', 3363], [#, 'FBbt00004868', 4017], [#, 'FBbt00003874', 4103], [#, 'FBbt00111746', 4323], [#, 'FBbt00004873', 4476], [#, 'FBbt00004905', 4559], [#, 'FBbt00003876', 4893]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'adult oenocyte', 202803], [#, 'adult tracheocyte', 281977], [#, 'adult neuron', 365976], [#, 'adult hemocyte', 371275], [#, 'adult epithelial cell', 373508], [#, 'adult fat cell', 395912], [#, 'adult muscle cell', 396390]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [11, [#, [#, 'medullary tangential neuron Mt8', 3363], [#, 'germarium cap cell', 4017], [#, 'lobula columnar neuron LC4', 4103], [#, 'lobula columnar neuron LC10c', 4323], [#, 'female germline stem cell', 4476], [#, 'border follicle cell', 4559], [#, 'lobula columnar neuron LC6', 4893]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0267521', 1690], [#, 'FBgn0086472', 1690], [#, 'FBgn0002626', 1690], [#, 'FBgn0285947', 1690], [#, 'FBgn0003279', 1690], [#, 'FBgn0017579', 1690], [#, 'FBgn0016726', 1690]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [12, [#, [#, 'FBgn0284232', 2], [#, 'FBgn0267889', 4], [#, 'FBgn0045478', 4], [#, 'FBgn0039374', 4], [#, 'FBgn0028537', 4], [#, 'FBgn0267886', 4], [#, 'FBgn0085252', 4]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, '18SrRNA-Psi:CR45861', 1690], [#, 'RpS25', 1690], [#, 'RpL32', 1690], [#, 'RpS10b', 1690], [#, 'RpL4', 1690], [#, 'RpL14', 1690], [#, 'RpL29', 1690]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [13, [#, [#, 'CG46316', 2], [#, 'CR46177', 4], [#, 'Gr64b', 4], [#, 'CG17770', 4], [#, 'CG31775', 4], [#, 'CR46174', 4], [#, 'CG34223', 4]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 1272.2646, 2315], [#, 1218.0267, 2325], [#, 1287.0013, 2439], [#, 1298.7013, 2444], [#, 1095.2902, 2445], [#, 24.43136, 2546], [#, 1191.8951, 2690]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [14, [#, [#, 269.05170000000004, 1], [#, 480.440107, 1], [#, 990.35309, 1], [#, 370.235704, 1], [#, 272.274411, 1], [#, 234.056368, 1], [#, 320.438443, 1]]]). -fb_tsv_pred_stats('most-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.076923, 41235], [#, 0.0625, 43249], [#, 0.1, 44120], [#, 0.025, 44512], [#, 0.04, 47158], [#, 0.083333, 47452], [#, 0.05, 59787]]]). -fb_tsv_pred_stats('less-frequent', 'scRNA-Seq_gene_expression', [15, [#, [#, 0.366282, 1], [#, 0.774026, 1], [#, 0.318802, 1], [#, 0.173431, 1], [#, 0.334605, 1], [#, 0.770109, 1], [#, 0.517905, 1]]]). -fb_tsv_pred_stats('num-columns', sed5C, [11]). -fb_tsv_pred_stats('duplicated-rows', sed5C, [0]). -fb_tsv_pred_stats('total-rows', sed5C, [120]). -fb_tsv_pred_stats('unique-values', sed5C, [1, 10, object]). -fb_tsv_pred_stats('unique-values', sed5C, [2, 10, object]). -fb_tsv_pred_stats('unique-values', sed5C, [3, 5, object]). -fb_tsv_pred_stats('unique-values', sed5C, [4, 6, object]). -fb_tsv_pred_stats('unique-values', sed5C, [5, 3, object]). -fb_tsv_pred_stats('unique-values', sed5C, [6, 2, object]). -fb_tsv_pred_stats('unique-values', sed5C, [7, 119, object]). -fb_tsv_pred_stats('unique-values', sed5C, [8, 119, object]). -fb_tsv_pred_stats('unique-values', sed5C, [9, 79, object]). -fb_tsv_pred_stats('unique-values', sed5C, [10, 2, object]). -fb_tsv_pred_stats('unique-values', sed5C, [11, 2, object]). -fb_tsv_pred_stats('missing-values', sed5C, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', sed5C, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', sed5C, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', sed5C, [4, 0, [], []]). -fb_tsv_pred_stats('null-value-count', sed5C, [5, '', 114]). -fb_tsv_pred_stats('missing-values', sed5C, [5, 114, [#, ''], [#, 114]]). -fb_tsv_pred_stats('null-value-count', sed5C, [6, '', 118]). -fb_tsv_pred_stats('missing-values', sed5C, [6, 118, [#, ''], [#, 118]]). -fb_tsv_pred_stats('missing-values', sed5C, [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', sed5C, [8, 0, [], []]). -fb_tsv_pred_stats('null-value-count', sed5C, [9, '', 41]). -fb_tsv_pred_stats('missing-values', sed5C, [9, 41, [#, ''], [#, 41]]). -fb_tsv_pred_stats('null-value-count', sed5C, [10, '', 118]). -fb_tsv_pred_stats('missing-values', sed5C, [10, 118, [#, ''], [#, 118]]). -fb_tsv_pred_stats('null-value-count', sed5C, [11, '', 118]). -fb_tsv_pred_stats('missing-values', sed5C, [11, 118, [#, ''], [#, 118]]). -fb_tsv_pred_stats('most-frequent', sed5C, [1, [#, [#, 'FBgg0000062', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6], [#, 'FBgg0000100', 7], [#, 'FBgg0000118', 14], [#, 'FBgg0000128', 75]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [1, [#, [#, 'FBgg0000117', 1], [#, 'FBgg0000104', 2], [#, 'FBgg0000062', 3], [#, 'FBgg0000114', 3], [#, 'FBgg0000072', 4], [#, 'FBgg0000040', 5], [#, 'FBgg0000081', 6]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [2, [#, [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6], [#, 'CASPASES', 7], [#, 'HECT UBIQUITIN LIGASES', 14], [#, 'UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES', 75]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [2, [#, [#, 'JOSEPHIN DEUBIQUITINASES', 1], [#, 'GOLIATH UBIQUITIN LIGASES', 2], [#, 'ROC UBIQUITIN LIGASES', 3], [#, 'N-ETHYLMALEIMIDE-SENSITIVE FACTORS', 3], [#, 'ADAM METALLOPROTEASES', 4], [#, 'RING-BETWEEN-RING UBIQUITIN LIGASES', 5], [#, 'STRUCTURAL MAINTENANCE OF CHROMOSOMES GENE FAMILY', 6]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [3, [#, [#, 'GO:0004843', 1], [#, 'GO:0004222', 4], [#, 'GO:0097153', 7], [#, 'GO:0016887', 9], [#, 'GO:0061630', 99]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [4, [#, [#, ubiquit, 1], [#, 'cysteine-type deubiquitinase activity', 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [4, [#, [#, 'cysteine-type deubiquitinase activity', 1], [#, ubiquit, 1], [#, 'metalloendopeptidase activity', 4], [#, 'cysteine-type endopeptidase activity involved in apoptotic process', 7], [#, 'ATP hydrolysis activity', 9], [#, 'ubiquitin protein ligase activity', 98]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [5, [#, [#, '3.4.19.12', 1], [#, '3.4.24.-', 4]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [6, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [7, [#, [#, 'FBgn0034546', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035233', 1], [#, 'FBgn0032635', 1], [#, 'FBgn0025186', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [7, [#, [#, 'FBgn0025186', 1], [#, 'FBgn0035232', 1], [#, 'FBgn0035024', 1], [#, 'FBgn0034573', 1], [#, 'FBgn0034546', 1], [#, 'FBgn0034314', 1], [#, 'FBgn0034312', 1]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [8, [#, [#, 'CG13442', 1], [#, 'Sou', 1], [#, 'CG11414', 1], [#, 'CG12099', 1], [#, 'Pex10', 1], [#, 'CG15141', 1], [#, 'ari-2', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [8, [#, [#, 'ari-2', 1], [#, 'CG12099', 1], [#, 'CG11414', 1], [#, 'Sou', 1], [#, 'CG13442', 1], [#, nopo, 1], [#, 'CG10916', 1]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [9, [#, [#, 'Ubr1 ubiquitin ligase', 1], [#, 'Peroxin 12', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Non-SMC element 1', 1], [#, 'Protein interacting with Ttk69 and Sin3A', 1], [#, 'ariadne 2', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [9, [#, [#, 'ariadne 2', 1], [#, 'Ring finger and CHY zinc finger domain containing 1', 1], [#, 'Peroxin 12', 1], [#, 'Ubr1 ubiquitin ligase', 1], [#, 'suppression of retinal degeneration disease 1 upon overexpression 1', 1], [#, highwire, 1], [#, 'Mahogunin ring finger 1', 1]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [10, [#, [#, '3.4.19.12', 1]]]). -fb_tsv_pred_stats('most-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). -fb_tsv_pred_stats('less-frequent', sed5C, [11, [#, [#, 'ubiquitinyl hydrolase 1', 1]]]). -fb_tsv_pred_stats('num-columns', sednJ, [2]). -fb_tsv_pred_stats('duplicated-rows', sednJ, [0]). -fb_tsv_pred_stats('total-rows', sednJ, [76447]). -fb_tsv_pred_stats('unique-values', sednJ, [1, 76447, object]). -fb_tsv_pred_stats('unique-values', sednJ, [2, 76447, object]). -fb_tsv_pred_stats('missing-values', sednJ, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', sednJ, [2, 0, [], []]). -fb_tsv_pred_stats('num-columns', gene_associatio, [2]). -fb_tsv_pred_stats('duplicated-rows', gene_associatio, [69]). -fb_tsv_pred_stats('total-rows', gene_associatio, [48039]). -fb_tsv_pred_stats('unique-values', gene_associatio, [1, 47970, object]). -fb_tsv_pred_stats('unique-values', gene_associatio, [2, 4664, object]). -fb_tsv_pred_stats('missing-values', gene_associatio, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', gene_associatio, [2, 0, [], []]). -fb_tsv_pred_stats('most-frequent', gene_associatio, [1, [#, [#, 'FB\\FBgn0053817\\His2A:CG33817\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053817\\His2A:CG33817\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33817\\CG33817\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\involved_in\\GO:0006325\\FB:FBrf0255270|GO_REF:0000024\\ISS\\MGI:MGI:2448285\\P\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\part_of\\GO:0000786\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\C\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053829\\His2A:CG33829\\enables\\GO:0003677\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:Q7L7L0\\F\\His2A:CG33829\\CG33829\\protein\\taxon:7227\\20160225\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053846\\His1:CG33846\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33846\\CG33846\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2], [#, 'FB\\FBgn0053843\\His1:CG33843\\part_of\\GO:0000785\\FB:FBrf0255270|GO_REF:0000024\\ISS\\UniProtKB:P07305\\C\\His1:CG33843\\CG33843\\protein\\taxon:7227\\20161201\\FlyBase\\\\', 2]]]). -fb_tsv_pred_stats('less-frequent', gene_associatio, [1, [#, [#, '!generated-by:', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:1904355\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0070198\\FB:FBrf0239784|PMID:21873635\\IBA\\PANTHER:PTN000652929\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20170420\\GO_Central\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\enables\\GO:0003950\\FB:FBrf0241717|PMID:30593492\\IMP\\\\F\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0090263\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0032436\\FB:FBrf0241717|PMID:30593492\\IMP\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20190806\\FlyBase\\\\', 1], [#, 'FB\\FBgn0027508\\Tnks\\involved_in\\GO:0046330\\FB:FBrf0254888|PMID:36222503\\IDA\\\\P\\tankyrase\\BcDNA:LD22548|CG17487|CG4719|DTNKS|Dm.pARTb|TNKS|Tankyrase|TkrsIR|dARTD5|dTANK|dTNKS|dTankyrase\\protein\\taxon:7227\\20230307\\FlyBase\\\\', 1]]]). -fb_tsv_pred_stats('most-frequent', gene_associatio, [2, [#, [#, 'sex|dsxF|dsxM|intersex-62c|ix-62c\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 19], [#, 'lipase\\protein\\taxon:7227\\20230703\\InterPro\\\\', 19], [#, 'factor|A7.1|ABF|Abf|CG3992|DmGATAb|GATA|GATAb|SERPENT|SRP|Serpent|Srp|abf|dGATAb|l(3)01549|l(3)89B2|l(3)neo45|serpentD|spt|srpD\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 21], [#, 'protein\\protein\\taxon:7227\\20151015\\FlyBase\\\\', 21], [#, 'sterile(2)ltoRJ36|fs(2)ltoRJ36|no-relish\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 23], [#, '1|Rhomboid-1|Rhomboid-I|Ve|Veinlet|iks|rho-1|rho1|rhom|rhomboid-1|rhomboid/veinlet|rhomboid1|ve|veinlet\\protein\\taxon:7227\\20200406\\FlyBase\\\\', 26], [#, '1.12|co|dNotch|fa|facet|l(1)3Cb|l(1)Ax|l(1)N|n[fah]|nd|notch|notchoid|shd|spl|split|strawberry|swb\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 44]]]). -fb_tsv_pred_stats('less-frequent', gene_associatio, [2, [#, [#, 'FlyBase', 1], [#, 'B2-3|Sox21|SoxB2.3|sox21a\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200725\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20200311\\GO_Central\\\\', 1], [#, 'B2-2|Sox21B|SoxB2.2|sox-like\\protein\\taxon:7227\\20221006\\GO_Central\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20060803\\FlyBase\\\\', 1], [#, '212\\CG33329|ORE-5|SP212\\protein\\taxon:7227\\20190311\\FlyBase\\\\', 1]]]). -fb_tsv_pred_stats('num-columns', disease_model_annotations, [12]). -fb_tsv_pred_stats('duplicated-rows', disease_model_annotations, [0]). -fb_tsv_pred_stats('total-rows', disease_model_annotations, [26750]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [1, 5165, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [2, 5165, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [3, 317, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [4, 6, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [5, 3554, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [6, 3554, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [7, 8303, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [8, 8303, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [9, 2657, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [10, 2657, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [11, 6770, object]). -fb_tsv_pred_stats('unique-values', disease_model_annotations, [12, 2675, object]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', disease_model_annotations, [3, '', 21466]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [3, 21466, [#, ''], [#, 21466]]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [5, 0, [], []]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [6, 0, [], []]). -fb_tsv_pred_stats('null-value-count', disease_model_annotations, [7, '', 6240]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [7, 6240, [#, ''], [#, 6240]]). -fb_tsv_pred_stats('null-value-count', disease_model_annotations, [8, '', 6240]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [8, 6240, [#, ''], [#, 6240]]). -fb_tsv_pred_stats('null-value-count', disease_model_annotations, [9, '', 20510]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [9, 20510, [#, ''], [#, 20510]]). -fb_tsv_pred_stats('null-value-count', disease_model_annotations, [10, '', 20510]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [10, 20510, [#, ''], [#, 20510]]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [11, 0, [], []]). -fb_tsv_pred_stats('missing-values', disease_model_annotations, [12, 0, [], []]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0026420', 300], [#, 'FBgn0029891', 301], [#, 'FBgn0261084', 371], [#, 'FBgn0024961', 448], [#, 'FBgn0025823', 630], [#, 'FBgn0025587', 680], [#, 'FBgn0015394', 948]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [1, [#, [#, 'FBgn0033093', 1], [#, 'FBgn0031951', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0031973', 1], [#, 'FBgn0266724', 1], [#, 'FBgn0050273', 1], [#, 'FBgn0031981', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [2, [#, [#, 'Hsap\\SNCA', 300], [#, 'Pink1', 301], [#, 'Hsap\\TARDBP', 371], [#, 'Hsap\\ATXN3', 448], [#, 'Hsap\\APP', 630], [#, 'Hsap\\HTT', 680], [#, 'Hsap\\MAPT', 948]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [2, [#, [#, 'CG3270', 1], [#, r2d2, 1], [#, 'Sirup', 1], [#, 'Spn28Dc', 1], [#, 'Trs20', 1], [#, 'CG30273', 1], [#, 'Megf8', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:11138', 300], [#, 'HGNC:11571', 371], [#, 'HGNC:7106', 448], [#, 'HGNC:620', 630], [#, 'HGNC:4851', 680], [#, 'HGNC:6893', 948]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [3, [#, [#, 'HGNC:6239', 1], [#, 'HGNC:16854', 1], [#, 'HGNC:11118', 1], [#, 'HGNC:12013', 1], [#, 'HGNC:18222', 1], [#, 'HGNC:14973', 1], [#, 'HGNC:19245', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [4, [#, [#, 'DOES NOT exacerbate', 21], [#, 'DOES NOT ameliorate', 106], [#, 'DOES NOT model', 135], [#, exacerbates, 2650], [#, ameliorates, 4360], [#, 'model of', 19478]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [5, [#, [#, 'DOID:10652', 652], [#, 'DOID:0060213', 692], [#, 'DOID:14330', 992], [#, 'DOID:1289', 1045], [#, 'DOID:12858', 1091], [#, 'DOID:162', 1305], [#, 'DOID:680', 1474]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [5, [#, [#, 'DOID:0111040', 1], [#, 'DOID:0080232', 1], [#, 'DOID:0110441', 1], [#, 'DOID:0111706', 1], [#, 'DOID:0080698', 1], [#, 'DOID:0080465', 1], [#, 'DOID:0060730', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [6, [#, [#, 'Alzheimer\'s disease', 652], [#, 'frontotemporal dementia and/or amyotrophic lateral sclerosis-1', 692], [#, 'Parkinson\'s disease', 992], [#, 'neurodegenerative disease', 1045], [#, 'Huntington\'s disease', 1091], [#, cancer, 1305], [#, tauopathy, 1474]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [6, [#, [#, 'glycogen storage disease IXd', 1], [#, 'autosomal dominant intellectual developmental disorder 51', 1], [#, 'dilated cardiomyopathy 2B', 1], [#, 'oblique facial clefting 1', 1], [#, 'Teebi hypertelorism syndrome 1', 1], [#, 'developmental and epileptic encephalopathy 30', 1], [#, 'torsion dystonia 1', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [7, [#, [#, 'FBal0060587', 153], [#, 'FBal0127292', 173], [#, 'FBal0193144', 193], [#, 'FBal0126526', 233], [#, 'FBal0126527', 239], [#, 'FBal0090630', 296]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [7, [#, [#, 'FBal0341584', 1], [#, 'FBal0265787', 1], [#, 'FBal0324663', 1], [#, 'FBal0262510', 1], [#, 'FBal0257944', 1], [#, 'FBal0235732', 1], [#, 'FBal0206026', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [8, [#, [#, 'Ras85D[V12.UAS]', 153], [#, 'Hsap\\HTT[Q93.ex1.UAS]', 173], [#, 'Pink1[B9]', 193], [#, 'Hsap\\MAPT[UAS.cWa]', 233], [#, 'Hsap\\MAPT[R406W.UAS]', 239], [#, 'Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]', 296]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [8, [#, [#, 'Tom7[HMC06597]', 1], [#, 'Lkb1[UAS.cWa]', 1], [#, 'Lkb1[VSH330167]', 1], [#, 'Lkb1[GL00019]', 1], [#, 'Lkb1[HMS01351]', 1], [#, 'Lkb1[KK108675]', 1], [#, 'Droj2[GD14050]', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:6677', 34], [#, 'HGNC:2638', 35], [#, 'HGNC:9475', 36], [#, 'HGNC:59', 44], [#, 'HGNC:10024', 45], [#, 'HGNC:12530', 48]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [9, [#, [#, 'HGNC:26013', 1], [#, 'HGNC:7703', 1], [#, 'HGNC:24846', 1], [#, 'HGNC:5201', 1], [#, 'HGNC:8966', 1], [#, 'HGNC:12756', 1], [#, 'HGNC:12974', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [10, [#, [#, 'LPL', 34], [#, 'CYP3A5', 35], [#, 'PRSS1', 36], [#, 'ABCC8', 44], [#, 'RLBP1', 45], [#, 'UGT1A1', 48]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [10, [#, [#, 'DNAAF5', 1], [#, 'NDUFB8', 1], [#, 'GAS2L2', 1], [#, 'HS6ST1', 1], [#, 'PIGL', 1], [#, 'WDR4', 1], [#, 'RNF113A', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [11, [#, [#, 'modeled by FLYBASE:Hsap\\HTT[128Q.1-336.UAS]; FB:FBal0294194', 129], [#, 'modeled by FLYBASE:Hsap\\MAPT[UAS.cWa]; FB:FBal0126526', 181], [#, 'modeled by FLYBASE:Hsap\\MAPT[R406W.UAS]; FB:FBal0126527', 189], [#, 'modeled by FLYBASE:Hsap\\ATXN3[tr.Q78.UAS.Tag:HA]; FB:FBal0090630', 241], [#, 'CEC', 361], [#, 'CEA', 4981], [#, 'IEA', 6240]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [11, [#, [#, 'is exacerbated by FLYBASE:Pka-C1[GD1276]; FB:FBal0208081', 1], [#, 'is ameliorated by FLYBASE:wg[l-12]; FB:FBal0018504', 1], [#, 'is ameliorated by FLYBASE:nej[Q7]; FB:FBal0094386', 1], [#, 'is ameliorated by FLYBASE:mam[8]; FB:FBal0012016', 1], [#, 'is ameliorated by FLYBASE:gro[1]; FB:FBal0005217', 1], [#, 'is ameliorated by FLYBASE:fz[EY13696]; FB:FBal0159195', 1], [#, 'is ameliorated by FLYBASE:fng[52]; FB:FBal0034614', 1]]]). -fb_tsv_pred_stats('most-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0228684', 158], [#, 'FBrf0241270', 174], [#, 'FBrf0248245', 176], [#, 'FBrf0244983', 239], [#, 'FBrf0227999', 245], [#, 'FBrf0218446', 303], [#, 'FBrf0241599', 6240]]]). -fb_tsv_pred_stats('less-frequent', disease_model_annotations, [12, [#, [#, 'FBrf0217529', 1], [#, 'FBrf0230073', 1], [#, 'FBrf0205420', 1], [#, 'FBrf0190823', 1], [#, 'FBrf0221444', 1], [#, 'FBrf0211611', 1], [#, 'FBrf0194165', 1]]]). -fb_tsv_pred_stats('num-columns', fu_gal4_table_, [2]). -fb_tsv_pred_stats('duplicated-rows', fu_gal4_table_, [25810]). -fb_tsv_pred_stats('total-rows', fu_gal4_table_, [43801]). -fb_tsv_pred_stats('unique-values', fu_gal4_table_, [1, 17987, object]). -fb_tsv_pred_stats('unique-values', fu_gal4_table_, [2, 343, object]). -fb_tsv_pred_stats('missing-values', fu_gal4_table_, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fu_gal4_table_, [2, '', 2614]). -fb_tsv_pred_stats('missing-values', fu_gal4_table_, [2, 2614, [#, ''], [#, 2614]]). -fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [1, [#, [#, ' \\driver\\: ', 319], [#, ' ', 319], [#, ' }', 319], [#, ' \\major_stages\\: ', 319], [#, ' \\transposons\\: ', 319], [#, ' \\major_tissues\\: ', 319], [#, ' },', 1580]]]). -fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [1, [#, [#, ' \\metaData\\: ', 1], [#, ' \\FBst0067166\\: \\67166\\,', 1], [#, ' \\FBst0067167\\: \\67167\\,', 1], [#, ' \\FBst0067168\\: \\67168\\,', 1], [#, ' \\FBst0067175\\: \\67175\\,', 1], [#, ' \\FBst0067177\\: \\67177\\,', 1], [#, ' \\FBst0067178\\: \\67178\\,', 1]]]). -fb_tsv_pred_stats('most-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}fruNP0021\\', 1], [#, 'Or47b-GAL4.7.467}\\', 1], [#, 'ato-GAL4.3.6}\\', 1], [#, 'GAL4}pnt14-94\\', 1], [#, 'en2.4-GAL4}\\', 3], [#, '},', 154]]]). -fb_tsv_pred_stats('less-frequent', fu_gal4_table_, [2, [#, [#, 'GawB}C587\\', 1], [#, 'GawB}fruNP0021\\', 1], [#, 'GMR9D11-GAL4}\\', 1], [#, 'alrm-GAL4.D}\\', 1], [#, 'GAL4-lacZ-Ubx(-FRT).dC}@; see @Scer\\\\GAL4[Ubx.PdC]@ elsewhere in this table.\\,', 1], [#, 'GAL4-lacZ-Ubx(FRT.f+).dC}\\', 1], [#, 'GAL4-\\03b1Tub84B(-FRT).P}@; see @Scer\\\\GAL4[\\03b1Tub84B.PP]@ elsewhere in this table.\\', 1]]]). -fb_tsv_pred_stats('num-columns', insertion_mapping, [7]). -fb_tsv_pred_stats('duplicated-rows', insertion_mapping, [92]). -fb_tsv_pred_stats('total-rows', insertion_mapping, [212010]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [1, 211918, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [2, 211884, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [3, 64780, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [4, 3, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [5, 4, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [6, 7609, object]). -fb_tsv_pred_stats('unique-values', insertion_mapping, [7, 3716, object]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [2, '', 127]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [2, 127, [#, ''], [#, 127]]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [3, '', 139921]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [3, 139921, [#, ''], [#, 139921]]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [4, '', 139921]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [4, 139921, [#, ''], [#, 139921]]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [5, '', 139921]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [5, 139921, [#, ''], [#, 139921]]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [6, '', 129488]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [6, 129488, [#, ''], [#, 129488]]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, '', 203698]). -fb_tsv_pred_stats('null-value-count', insertion_mapping, [7, ?, 70]). -fb_tsv_pred_stats('missing-values', insertion_mapping, [7, 203768, [#, '', ?], [#, 203698, 70]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [1, [#, [#, 'P{Roc1b.+t1.17}', 4], [#, 'P{Mcp-wy', 4], [#, 'P{Fab7-w', 6], [#, 'P{SUPor-P.PRE', 9], [#, 'P{ush-lacZ.-2190.-1421}', 9], [#, 'P{Mcp-ff', 13], [#, 'P{Mcp-w', 44]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [1, [#, [#, 'P{UASp-GAP43.mEos}1', 1], [#, 'P{KK106851}VIE-260B', 1], [#, 'P{KK106853}VIE-260B', 1], [#, 'P{KK106855}VIE-260B', 1], [#, 'P{KK106857}VIE-260B', 1], [#, 'P{KK106859}VIE-260B', 1], [#, 'P{KK106861}VIE-260B', 1]]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [2, [#, [#, 'FBti0120120', 1], [#, 'FBti0120119', 1], [#, 'FBti0120118', 1], [#, 'FBti0120117', 1], [#, 'FBti0120126', 1], [#, 'FBti0129988', 1]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [2, [#, [#, 'FBti0129988', 1], [#, 'FBti0120115', 1], [#, 'FBti0120116', 1], [#, 'FBti0120117', 1], [#, 'FBti0120118', 1], [#, 'FBti0120119', 1], [#, 'FBti0120120', 1]]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [3, [#, [#, '3L:4692761..4692761', 19], [#, '3L:3250542..3250542', 20], [#, 'X:246305..246305', 21], [#, '3R:31883471..31883471', 21], [#, '2L:22237519..22237519', 37], [#, 'X:6861890..6861890', 53]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [3, [#, [#, '3R:5508394..5508394', 1], [#, '3R:9353290..9353290', 1], [#, '3R:8033496..8033496', 1], [#, '2L:17260772..17260772', 1], [#, '3L:540584..540584', 1], [#, '3L:8360935..8360935', 1], [#, '3L:11819914..11819914', 1]]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [4, [#, [#, t, 7054], [#, f, 65035]]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [5, [#, [#, 0.0, 10777], [#, -1.0, 26604], [#, 1.0, 34708]]]). -fb_tsv_pred_stats('most-frequent', insertion_mapping, [7, [#, [#, 75, 'B', 30], [#, '12C1-12C2', 41], [#, '35D1-35D2', 44], [#, '21B4-21B6', 48], [#, '47A11-47A14', 55]]]). -fb_tsv_pred_stats('less-frequent', insertion_mapping, [7, [#, [#, '59B4-59B5', 1], [#, '79D1-79D4', 1], [#, '50C4-50C5', 1], [#, '60D5-60D6', 1], [#, '47E4-47E5', 1], [#, '47A1-47B14', 1], [#, '46B13--46E4', 1]]]). -fb_tsv_pred_stats('num-columns', 'cyto-genetic-seq', [4]). -fb_tsv_pred_stats('duplicated-rows', 'cyto-genetic-seq', [0]). -fb_tsv_pred_stats('total-rows', 'cyto-genetic-seq', [600]). -fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [1, 600, object]). -fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [2, 292, object]). -fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [3, 593, object]). -fb_tsv_pred_stats('unique-values', 'cyto-genetic-seq', [4, 8, object]). -fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [3, '', 8]). -fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [3, 8, [#, ''], [#, 8]]). -fb_tsv_pred_stats('null-value-count', 'cyto-genetic-seq', [4, '', 577]). -fb_tsv_pred_stats('missing-values', 'cyto-genetic-seq', [4, 577, [#, ''], [#, 577]]). -fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[43]', 7], [#, '3-[47.5]', 7], [#, '3-[48]', 10], [#, '2-[55]', 13], [#, '3-[45]', 17], [#, '2-[54]', 24], [#, '3-[47]', 24]]]). -fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [2, [#, [#, '3-[85]', 1], [#, '3-[84]', 1], [#, '3-[97]', 1], [#, '3-[96]', 1], [#, '3-[95]', 1], [#, '2-[69]', 1], [#, '2-[70]', 1]]]). -fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [3, [#, [#, '3L:10316396..10769950', 1], [#, '3L:9865311..10316395', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9333838..9547269', 1], [#, '3L:11174026..11254920', 1], [#, 'X:408583..660483', 1]]]). -fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [3, [#, [#, 'X:408583..660483', 1], [#, '3L:8981731..9125749', 1], [#, '3L:9125750..9333837', 1], [#, '3L:9333838..9547269', 1], [#, '3L:9547270..9865310', 1], [#, '3L:9865311..10316395', 1], [#, '3L:10316396..10769950', 1]]]). -fb_tsv_pred_stats('most-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 24 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, inversion, 6], [#, 'includes 1 area of non-identity', 6]]]). -fb_tsv_pred_stats('less-frequent', 'cyto-genetic-seq', [4, [#, [#, 'includes 24 area(s) of non-identity', 1], [#, 'includes 16 area(s) of non-identity', 1], [#, 'includes 6 area(s) of non-identity', 1], [#, 'failed to convert', 3], [#, 'in area of non-identity', 5], [#, 'includes 1 area of non-identity', 6], [#, inversion, 6]]]). -fb_tsv_pred_stats('num-columns', 'genome-cyto-seq', [3]). -fb_tsv_pred_stats('duplicated-rows', 'genome-cyto-seq', [0]). -fb_tsv_pred_stats('total-rows', 'genome-cyto-seq', [5033]). -fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [1, 5033, object]). -fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [2, 5033, int64]). -fb_tsv_pred_stats('unique-values', 'genome-cyto-seq', [3, 5033, int64]). -fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', 'genome-cyto-seq', [3, 0, [], []]). -fb_tsv_pred_stats('num-columns', dataset_metadata, [4]). -fb_tsv_pred_stats('duplicated-rows', dataset_metadata, [0]). -fb_tsv_pred_stats('total-rows', dataset_metadata, [22220266]). -fb_tsv_pred_stats('unique-values', dataset_metadata, [1, 3493, object]). -fb_tsv_pred_stats('unique-values', dataset_metadata, [2, 3493, object]). -fb_tsv_pred_stats('unique-values', dataset_metadata, [3, 1885456, object]). -fb_tsv_pred_stats('unique-values', dataset_metadata, [4, 1885453, object]). -fb_tsv_pred_stats('missing-values', dataset_metadata, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', dataset_metadata, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', dataset_metadata, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', dataset_metadata, [4, unknown, 1]). -fb_tsv_pred_stats('missing-values', dataset_metadata, [4, 1, [#, unknown], [#, 1]]). -fb_tsv_pred_stats('most-frequent', dataset_metadata, [1, [#, [#, 'FBlc0000146', 67302], [#, 'FBlc0000142', 67302], [#, 'FBlc0000143', 67302], [#, 'FBlc0000137', 67302], [#, 'FBlc0000005', 161905], [#, 'FBlc0000049', 220083], [#, 'FBlc0000029', 241818]]]). -fb_tsv_pred_stats('less-frequent', dataset_metadata, [1, [#, [#, 'FBlc0002175', 1], [#, 'FBlc0001943', 1], [#, 'FBlc0002094', 1], [#, 'FBlc0002095', 1], [#, 'FBlc0002096', 1], [#, 'FBlc0002097', 1], [#, 'FBlc0002098', 1]]]). -fb_tsv_pred_stats('most-frequent', dataset_metadata, [2, [#, [#, mE_mRNA_P15_junctions, 67302], [#, mE_mRNA_P5_junctions, 67302], [#, mE_mRNA_P6_junctions, 67302], [#, mE_mRNA_L3_12hr_junctions, 67302], [#, 'EK_EP_cDNA', 161905], [#, 'RP_cDNA', 220083], [#, 'Affymetrix_GeneChip_v2', 241818]]]). -fb_tsv_pred_stats('less-frequent', dataset_metadata, [2, [#, [#, 'ChIP-Seq_mE5125_HDAC1_E16', 1], [#, 'ChIP-chip_mE3893_Su(var)205_RNAi_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE2667_Su(var)205_CME-W1-Cl.8+', 1], [#, 'ChIP-chip_mE2666_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE4126_Su(var)205_ML-DmBG3-c2', 1], [#, 'ChIP-chip_mE6074_Su(var)205_S2-DRSC', 1], [#, 'ChIP-chip_mE3707_Su(var)205_S2-DRSC', 1]]]). -fb_tsv_pred_stats('most-frequent', dataset_metadata, [3, [#, [#, 'FBgn0011217', 1890], [#, 'FBgn0015790', 1890], [#, 'FBgn0040372', 1891], [#, 'FBgn0002781', 1892], [#, 'FBgn0013263', 1896], [#, 'FBgn0020412', 1909], [#, 'FBgn0261617', 1911]]]). -fb_tsv_pred_stats('less-frequent', dataset_metadata, [3, [#, [#, '1616608_a_at_1350', 1], [#, 'FBsf0000240631', 1], [#, 'FBsf0000240630', 1], [#, 'FBsf0000240629', 1], [#, 'FBsf0000240628', 1], [#, 'FBsf0000240627', 1], [#, 'FBsf0000240626', 1]]]). -fb_tsv_pred_stats('most-frequent', dataset_metadata, [4, [#, [#, 'Rab11', 1890], [#, eff, 1890], [#, 'G9a', 1891], [#, 'mod(mdg4)', 1892], [#, 'Trl', 1896], [#, 'JIL-1', 1909], [#, nej, 1911]]]). -fb_tsv_pred_stats('less-frequent', dataset_metadata, [4, [#, [#, '1616608_a_at_1350', 1], [#, 'TFBS_D_002907', 1], [#, 'TFBS_D_002906', 1], [#, 'TFBS_D_002905', 1], [#, 'TFBS_D_002904', 1], [#, 'TFBS_D_002903', 1], [#, 'TFBS_D_002902', 1]]]). -fb_tsv_pred_stats('num-columns', dmel_paralogs, [11]). -fb_tsv_pred_stats('duplicated-rows', dmel_paralogs, [0]). -fb_tsv_pred_stats('total-rows', dmel_paralogs, [223055]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [1, 10772, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [2, 10772, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [3, 12, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [4, 10693, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [5, 2, int64]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [6, 10772, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [7, 10772, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [8, 12, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [9, 10693, object]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [10, 2, int64]). -fb_tsv_pred_stats('unique-values', dmel_paralogs, [11, 13, int64]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [5, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [6, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [7, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [8, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [9, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [10, 0, [], []]). -fb_tsv_pred_stats('missing-values', dmel_paralogs, [11, 0, [], []]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [1, [#, [#, 'FBgn0040606', 1], [#, 'FBgn0030608', 1], [#, 'FBgn0263086', 1], [#, 'FBgn0263094', 1], [#, 'FBgn0030613', 1], [#, 'FBgn0037719', 1], [#, 'FBgn0013949', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [2, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [2, [#, [#, 'CG6503', 1], [#, 'Lsd-2', 1], [#, 'CG43354', 1], [#, 'CG43362', 1], [#, 'Rab3-GEF', 1], [#, bocks, 1], [#, 'Elal', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [3, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [3, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [4, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '21799330..21800904', 249], [#, '25071126..25072712', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [4, [#, [#, '7918517..7920131', 1], [#, '770363..770462', 1], [#, '11993989..11995432', 1], [#, '11997900..11999340', 1], [#, '22608670..22613656', 1], [#, '9839776..9841163', 1], [#, '5563977..5564815', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [5, [#, [#, 1, 107829], [#, -1, 115226]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0036891', 247], [#, 'FBgn0033362', 247], [#, 'FBgn0042098', 248], [#, 'FBgn0034661', 249], [#, 'FBgn0039272', 249], [#, 'FBgn0031619', 250], [#, 'FBgn0023479', 279]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [6, [#, [#, 'FBgn0004867', 1], [#, 'FBgn0031971', 1], [#, 'FBgn0046247', 1], [#, 'FBgn0026702', 1], [#, 'FBgn0032699', 1], [#, 'FBgn0039454', 1], [#, 'FBgn0031077', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [7, [#, [#, 'CG9372', 247], [#, 'CG8172', 247], [#, 'CG18735', 248], [#, tpr, 249], [#, 'CG11836', 249], [#, 'CG3355', 250], [#, teq, 279]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [7, [#, [#, 'RpS2', 1], [#, 'Sirup', 1], [#, 'CG5938', 1], [#, 'Pop1', 1], [#, 'CG10383', 1], [#, 'CG14247', 1], [#, 'THADA', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [8, [#, [#, 'Y', 220], [#, 4.0, 1269], [#, 'X', 27590], [#, 2, 'L', 38491], [#, 3, 'L', 43684], [#, 2, 'R', 52635], [#, 3, 'R', 59090]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [8, [#, [#, 211000022280494.0, 1], [#, 211000022278760.0, 17], [#, 211000022279188.0, 17], [#, 'Unmapped_Scaffold_8_D1580_D1567', 18], [#, rDNA, 23], [#, 'Y', 220], [#, 4.0, 1269]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [9, [#, [#, '9007234..9013526', 247], [#, '21798017..21799195', 248], [#, '25071126..25072712', 249], [#, '21799330..21800904', 249], [#, '4651403..4652892', 250], [#, '9074643..9092131', 279], [#, '3206949..3208985', 384]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [9, [#, [#, '9896265..9897552', 1], [#, '11126877..11129087', 1], [#, '2079919..2081286', 1], [#, '22080382..22083473', 1], [#, '17849727..17852453', 1], [#, '17830828..17841705', 1], [#, '5093976..5095910', 1]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [10, [#, [#, 1, 107830], [#, -1, 115225]]]). -fb_tsv_pred_stats('most-frequent', dmel_paralogs, [11, [#, [#, 7, 4614], [#, 6, 6222], [#, 5, 8946], [#, 4, 14762], [#, 3, 27362], [#, 2, 39938], [#, 1, 105517]]]). -fb_tsv_pred_stats('less-frequent', dmel_paralogs, [11, [#, [#, 13, 230], [#, 12, 1190], [#, 11, 2910], [#, 9, 3614], [#, 8, 3650], [#, 10, 4100], [#, 7, 4614]]]). -fb_tsv_pred_stats('num-columns', entity_publication, [4]). -fb_tsv_pred_stats('duplicated-rows', entity_publication, [344]). -fb_tsv_pred_stats('total-rows', entity_publication, [5580889]). -fb_tsv_pred_stats('unique-values', entity_publication, [1, 1952735, object]). -fb_tsv_pred_stats('unique-values', entity_publication, [2, 1952521, object]). -fb_tsv_pred_stats('unique-values', entity_publication, [3, 105916, object]). -fb_tsv_pred_stats('unique-values', entity_publication, [4, 63490, object]). -fb_tsv_pred_stats('missing-values', entity_publication, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', entity_publication, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', entity_publication, [3, '', 644]). -fb_tsv_pred_stats('missing-values', entity_publication, [3, 644, [#, ''], [#, 644]]). -fb_tsv_pred_stats('null-value-count', entity_publication, [4, '', 3444472]). -fb_tsv_pred_stats('missing-values', entity_publication, [4, 3444472, [#, ''], [#, 3444472]]). -fb_tsv_pred_stats('most-frequent', entity_publication, [1, [#, [#, 'FBgn0003996', 4465], [#, 'FBgn0014446', 4694], [#, 'FBto0000342', 4872], [#, 'FBgn0014447', 5750], [#, 'FBto0000180', 5793], [#, 'FBte0000037', 11131], [#, 'FBgn0014445', 17375]]]). -fb_tsv_pred_stats('less-frequent', entity_publication, [1, [#, [#, 'FBtr0334316', 1], [#, 'FBig0000117350', 1], [#, 'FBig0000117351', 1], [#, 'FBig0000117352', 1], [#, 'FBig0000117353', 1], [#, 'FBig0000117354', 1], [#, 'FBig0000117355', 1]]]). -fb_tsv_pred_stats('most-frequent', entity_publication, [2, [#, [#, w, 4465], [#, 'Avic\\GFP', 4694], [#, 'UASt', 4872], [#, 'Ecol\\lacZ', 5750], [#, 'UAS', 5793], [#, 'P-element', 11131], [#, 'Scer\\GAL4', 17375]]]). -fb_tsv_pred_stats('less-frequent', entity_publication, [2, [#, [#, 'lncRNA:Hsromega-RG', 1], [#, 'FBgn0037913-FBgn0286818', 1], [#, 'FBgn0025885-FBgn0286818', 1], [#, pA_site_034101, 1], [#, 'FBgn0003944-FBgn0013263', 1], [#, 'FBgn0003545-FBgn0260639', 1], [#, 'FBgn0014189-FBgn0035110', 1]]]). -fb_tsv_pred_stats('most-frequent', entity_publication, [3, [#, [#, 'FBrf0104946', 130692], [#, 'FBrf0213603', 147340], [#, 'FBrf0239962', 162644], [#, 'FBrf0241309', 162865], [#, 'FBrf0200326', 176400], [#, 'FBrf0202436', 182332], [#, 'FBrf0105495', 545468]]]). -fb_tsv_pred_stats('less-frequent', entity_publication, [3, [#, [#, 'FBrf0201074', 1], [#, 'FBrf0126212', 1], [#, 'FBrf0134967', 1], [#, 'FBrf0144507', 1], [#, 'FBrf0125535', 1], [#, 'FBrf0155006', 1], [#, 'FBrf0086185', 1]]]). -fb_tsv_pred_stats('most-frequent', entity_publication, [4, [#, [#, 15238527.0, 40234], [#, 22936248.0, 43755], [#, 19465919.0, 49687], [#, 28851752.0, 57661], [#, 29191225.0, 75081], [#, 17994087.0, 176400]]]). -fb_tsv_pred_stats('less-frequent', entity_publication, [4, [#, [#, 17435764.0, 1], [#, 9345112.0, 1], [#, 29709602.0, 1], [#, 9013669.0, 1], [#, 12921737.0, 1], [#, 27591190.0, 1], [#, 25713358.0, 1]]]). -fb_tsv_pred_stats('num-columns', fbrf_pmid_pmcid_doi, [7]). -fb_tsv_pred_stats('duplicated-rows', fbrf_pmid_pmcid_doi, [0]). -fb_tsv_pred_stats('total-rows', fbrf_pmid_pmcid_doi, [99294]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [1, 99294, object]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [2, 99294, int64]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [3, 43548, object]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [4, 91433, object]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [5, 27, object]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [6, 99240, object]). -fb_tsv_pred_stats('unique-values', fbrf_pmid_pmcid_doi, [7, 71, object]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [2, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [3, '', 55747]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [3, 55747, [#, ''], [#, 55747]]). -fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [4, '', 7862]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [4, 7862, [#, ''], [#, 7862]]). -fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [5, '', 10]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [5, 10, [#, ''], [#, 10]]). -fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [6, '', 10]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [6, 10, [#, ''], [#, 10]]). -fb_tsv_pred_stats('null-value-count', fbrf_pmid_pmcid_doi, [7, '', 10]). -fb_tsv_pred_stats('missing-values', fbrf_pmid_pmcid_doi, [7, 10, [#, ''], [#, 10]]). -fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC365244', 1], [#, 'PMC365050', 1], [#, 'PMC365176', 1], [#, 'PMC254114', 1], [#, 'PMC6569114', 1], [#, 'PMC365333', 1]]]). -fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [3, [#, [#, 'PMC5728115', 1], [#, 'PMC6569114', 1], [#, 'PMC254114', 1], [#, 'PMC365176', 1], [#, 'PMC365050', 1], [#, 'PMC365244', 1], [#, 'PMC365271', 1]]]). -fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1016/s0169-4758(97)01058-2', 1], [#, '10.1007/pl00006177', 1], [#, '10.1111/j.1440-169X.1977.00345.x', 1]]]). -fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [4, [#, [#, '10.1111/j.1440-169X.1977.00345.x', 1], [#, '10.1126/science.277.5327.825', 1], [#, '10.1006/excr.1997.3618', 1], [#, '10.1002/(SICI)1097-0169(1997)37:4<300::AID-CM2>3.0.CO;2-8', 1], [#, '10.1002/(SICI)1520-6327(1997)36:1<51::AID-ARCH5>3.0.CO;2-Z', 1], [#, '10.1021/bi970460d', 1], [#, '10.1002/dvg.1020150103', 1]]]). -fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, 'conference report', 178], [#, abstract, 191], [#, erratum, 306], [#, letter, 308], [#, note, 2322], [#, review, 13466], [#, paper, 81917]]]). -fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [5, [#, [#, book, 1], [#, 'bibliographic list', 1], [#, poster, 1], [#, website, 1], [#, lecture, 1], [#, preprint, 1], [#, thesis, 1]]]). -fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Dernburg, 2011, Cold Spring Harb. Protoc. 2011(12): ', 3], [#, 'Shen, 2012, Cold Spring Harb. Protoc. 2012(5): ', 3], [#, 'Marley and Baines, 2011, Cold Spring Harb. Protoc. 2011(9): ', 3], [#, 'Sweeney et al., 2012, Cold Spring Harb. Protoc. 2012(2): ', 3], [#, 'Andlauer and Sigrist, 2012, Cold Spring Harb. Protoc. 2012(4): ', 4], [#, 'Macleod, 2012, Cold Spring Harb. Protoc. 2012(7): ', 5]]]). -fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [6, [#, [#, 'Rizki et al., 1977, Dev. Growth Differ. 19(4): 345--356', 1], [#, 'Kutskova and Mamon, 1996, Genetika, Moscow 32(10): 1406--1416', 1], [#, 'Kuromi et al., 1997, Neurosci. Res. 27(2): 101--113', 1], [#, 'Kuhl and Wedlich, 1997, BioEssays 19(2): 101--104', 1], [#, 'Kosuda, 1996, Zool. Sci., Tokyo 13(6): 821--824', 1], [#, 'Kosman and Small, 1997, Development 124(7): 1343--1354', 1], [#, 'Kidd and Raff, 1997, J. Cell Sci. 110(2): 209--219', 1]]]). -fb_tsv_pred_stats('most-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2019_01, 667], [#, fb_2015_01, 799], [#, fb_2017_04, 959], [#, fb_2016_05, 1908], [#, fb_2021_05, 2210], [#, fb_2018_03, 6651], [#, fb_2011_10, 53869]]]). -fb_tsv_pred_stats('less-frequent', fbrf_pmid_pmcid_doi, [7, [#, [#, fb_2018_02, 363], [#, fb_2012_06, 375], [#, fb_2019_02, 394], [#, fb_2018_06, 402], [#, fb_2012_01, 407], [#, fb_2013_03, 410]]]). -fb_tsv_pred_stats('num-columns', organism_list, [6]). -fb_tsv_pred_stats('duplicated-rows', organism_list, [0]). -fb_tsv_pred_stats('total-rows', organism_list, [57986]). -fb_tsv_pred_stats('unique-values', organism_list, [1, 19142, object]). -fb_tsv_pred_stats('unique-values', organism_list, [2, 31712, object]). -fb_tsv_pred_stats('unique-values', organism_list, [3, 1044, object]). -fb_tsv_pred_stats('unique-values', organism_list, [4, 103, object]). -fb_tsv_pred_stats('unique-values', organism_list, [5, 960, object]). -fb_tsv_pred_stats('unique-values', organism_list, [6, 2, object]). -fb_tsv_pred_stats('null-value-count', organism_list, [1, unknown, 9]). -fb_tsv_pred_stats('missing-values', organism_list, [1, 9, [#, unknown], [#, 9]]). -fb_tsv_pred_stats('null-value-count', organism_list, [2, '', 1]). -fb_tsv_pred_stats('null-value-count', organism_list, [2, unknown, 7]). -fb_tsv_pred_stats('null-value-count', organism_list, [2, '.', 13]). -fb_tsv_pred_stats('missing-values', organism_list, [2, 21, [#, '', unknown, '.'], [#, 1, 7, 13]]). -fb_tsv_pred_stats('null-value-count', organism_list, [3, '', 56943]). -fb_tsv_pred_stats('missing-values', organism_list, [3, 56943, [#, ''], [#, 56943]]). -fb_tsv_pred_stats('null-value-count', organism_list, [4, '', 57883]). -fb_tsv_pred_stats('missing-values', organism_list, [4, 57883, [#, ''], [#, 57883]]). -fb_tsv_pred_stats('null-value-count', organism_list, [5, '', 57027]). -fb_tsv_pred_stats('missing-values', organism_list, [5, 57027, [#, ''], [#, 57027]]). -fb_tsv_pred_stats('null-value-count', organism_list, [6, '', 57353]). -fb_tsv_pred_stats('missing-values', organism_list, [6, 57353, [#, ''], [#, 57353]]). -fb_tsv_pred_stats('most-frequent', organism_list, [1, [#, [#, 'Anopheles', 200], [#, 'Bombus', 206], [#, 'Bactrocera', 208], [#, 'Trigonopterus', 269], [#, 'Carabus', 364], [#, 'Bembidion', 399], [#, 'Drosophila', 801]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [1, [#, [#, 'Aaages', 1], [#, 'Mononeuron', 1], [#, 'Mononychus', 1], [#, 'Monophadnus', 1], [#, 'Monophlebulus', 1], [#, 'Monoplistes', 1], [#, 'Monosiga', 1]]]). -fb_tsv_pred_stats('most-frequent', organism_list, [2, [#, [#, orientalis, 59], [#, 'n. sp.', 63], [#, affinis, 63], [#, japonica, 71], [#, bicolor, 73], [#, 'gen. sp.', 94], [#, 'sp.', 6204]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [2, [#, [#, prior, 1], [#, 'nr. argyropleura AHD-2011', 1], [#, argyropleura, 1], [#, ericae, 1], [#, pictellus, 1], [#, triplex, 1], [#, caudex, 1]]]). -fb_tsv_pred_stats('most-frequent', organism_list, [3, [#, [#, 'Dvar', 1], [#, 'Dval', 1], [#, 'Dust', 1], [#, 'Duni', 1], [#, 'Duns', 1], [#, 'Dunm', 1]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [3, [#, [#, 'Dpac', 1], [#, 'Duns', 1], [#, 'Duni', 1], [#, 'Dust', 1], [#, 'Dval', 1], [#, 'Dvar', 1], [#, 'Dvnz', 1]]]). -fb_tsv_pred_stats('most-frequent', organism_list, [4, [#, [#, 'eastern newt', 1], [#, rice, 1], [#, 'Japanese medaka', 1], [#, 'red mason bee', 1], [#, 'laboratory mouse', 1], [#, 'fruit fly', 2]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [4, [#, [#, 'Chilean rose tarantula', 1], [#, 'Japanese medaka', 1], [#, rice, 1], [#, 'eastern newt', 1], [#, 'brown planthopper', 1], [#, 'common tobacco', 1], [#, 'starlet sea anemone', 1]]]). -fb_tsv_pred_stats('most-frequent', organism_list, [5, [#, [#, 132243.0, 1], [#, 7244.0, 1], [#, 306030.0, 1], [#, 95458.0, 1], [#, 30050.0, 1], [#, 62873.0, 1]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [5, [#, [#, 103846.0, 1], [#, 30050.0, 1], [#, 95458.0, 1], [#, 306030.0, 1], [#, 7244.0, 1], [#, 132243.0, 1], [#, 252922.0, 1]]]). -fb_tsv_pred_stats('most-frequent', organism_list, [6, [#, [#, y, 633]]]). -fb_tsv_pred_stats('less-frequent', organism_list, [6, [#, [#, y, 633]]]). -fb_tsv_pred_stats('num-columns', stocks_FB2023_04, [7]). -fb_tsv_pred_stats('duplicated-rows', stocks_FB2023_04, [0]). -fb_tsv_pred_stats('total-rows', stocks_FB2023_04, [147006]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [1, 147006, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [2, 6, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [3, 3, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [4, 276, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [5, 142808, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [6, 143601, object]). -fb_tsv_pred_stats('unique-values', stocks_FB2023_04, [7, 146977, object]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [2, '', 1]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [2, 1, [#, ''], [#, 1]]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [3, '', 1]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [3, 1, [#, ''], [#, 1]]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [4, '', 1]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [4, 1, [#, ''], [#, 1]]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, '', 21]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [5, ?, 1]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [5, 22, [#, '', ?], [#, 21, 1]]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [6, '', 28]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [6, 28, [#, ''], [#, 28]]). -fb_tsv_pred_stats('null-value-count', stocks_FB2023_04, [7, '', 30]). -fb_tsv_pred_stats('missing-values', stocks_FB2023_04, [7, 30, [#, ''], [#, 30]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [2, [#, [#, 'NDSSC', 2072], [#, 'FlyORF', 3059], [#, 'Kyoto', 25744], [#, 'Vienna', 38016], [#, 'Bloomington', 78114]]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [3, [#, [#, 'ethanol-preserved specimen ; FBsv0000007', 265], [#, 'living stock ; FBsv0000002', 146740]]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [4, [#, [#, 'Dwil', 40], [#, 'Dmer', 46], [#, 'Dmau', 52], [#, 'Dvir', 77], [#, 'Dpse', 188], [#, 'Dsim', 225], [#, 'Dmel', 145074]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [4, [#, [#, 'Dora', 1], [#, 'Dgrs', 1], [#, 'Dgun', 1], [#, 'Dnec', 1], [#, 'Dprc', 1], [#, 'Dcai', 1]]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [5, [#, [#, 'st[1]', 6], [#, 'w[1118]', 7], [#, 'y[1]', 10], [#, 'v[1]', 11], [#, 'w[1]', 21], [#, 'wild-type', 1649]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [5, [#, [#, 'y[1]; M{v[+t1.8]=WKO.1-B11}ZH-86Fb', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23035/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23034/TM3, Sb[1] Ser[1]', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23027/SM1', 1], [#, 'y[1] w[*]; P{w[+mC]=GSV7}GS23024', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23023/SM1', 1], [#, 'y[1] w[67c23]; P{w[+mC]=GSV7}GS23022/TM3, Sb[1] Ser[1]', 1]]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [6, [#, [#, 'Dana\\wild-type', 29], [#, 'Dari\\wild-type', 31], [#, 'Dwil\\wild-type', 32], [#, 'Dsim\\wild-type', 71], [#, 'Dpse\\wild-type', 95], [#, 'Dmel\\wild-type', 96], [#, 'wild-type', 235]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [6, [#, [#, 'y[1] v[1]; P{y[+t7.7] v[+t1.8]=TKO.GS03376}attP40', 1], [#, 'y[1]w[67c23];P{w[+mC]=GSV7}GS22586/SM1', 1], [#, 'y[1]w[67c23];P{w[+mC]=GSV7}GS22584/SM1', 1], [#, 'y[1] w[67c23] P{w[+mC]=GSV7}GS22580 / Binsinscy', 1], [#, 'y[1] w[67c23] P{w[+mC]=GSV7}GS22579 / Binsinscy', 1], [#, 'y[1] w[67c23] P{w[+mC]=GSV7}GS22578 / Binsinscy', 1], [#, 'y[1] w[67c23] P{w[+mC]=GSV7}GS22577 / Binsinscy', 1]]]). -fb_tsv_pred_stats('most-frequent', stocks_FB2023_04, [7, [#, [#, 201049.0, 1], [#, 201043.0, 1], [#, 201040.0, 1], [#, 201037.0, 1], [#, 201059.0, 1], [#, 2.0, 1]]]). -fb_tsv_pred_stats('less-frequent', stocks_FB2023_04, [7, [#, [#, 2.0, 1], [#, 201073.0, 1], [#, 201072.0, 1], [#, 201070.0, 1], [#, 201063.0, 1], [#, 201062.0, 1], [#, 201059.0, 1]]]). -fb_tsv_pred_stats('num-columns', fb_synonym, [6]). -fb_tsv_pred_stats('duplicated-rows', fb_synonym, [0]). -fb_tsv_pred_stats('total-rows', fb_synonym, [1001254]). -fb_tsv_pred_stats('unique-values', fb_synonym, [1, 1001254, object]). -fb_tsv_pred_stats('unique-values', fb_synonym, [2, 906, object]). -fb_tsv_pred_stats('unique-values', fb_synonym, [3, 1001062, object]). -fb_tsv_pred_stats('unique-values', fb_synonym, [4, 37453, object]). -fb_tsv_pred_stats('unique-values', fb_synonym, [5, 13823, object]). -fb_tsv_pred_stats('unique-values', fb_synonym, [6, 604083, object]). -fb_tsv_pred_stats('missing-values', fb_synonym, [1, 0, [], []]). -fb_tsv_pred_stats('missing-values', fb_synonym, [2, 0, [], []]). -fb_tsv_pred_stats('missing-values', fb_synonym, [3, 0, [], []]). -fb_tsv_pred_stats('null-value-count', fb_synonym, [4, '', 947217]). -fb_tsv_pred_stats('missing-values', fb_synonym, [4, 947217, [#, ''], [#, 947217]]). -fb_tsv_pred_stats('null-value-count', fb_synonym, [5, '', 985999]). -fb_tsv_pred_stats('missing-values', fb_synonym, [5, 985999, [#, ''], [#, 985999]]). -fb_tsv_pred_stats('null-value-count', fb_synonym, [6, '', 370940]). -fb_tsv_pred_stats('null-value-count', fb_synonym, [6, none, 1]). -fb_tsv_pred_stats('missing-values', fb_synonym, [6, 370941, [#, '', none], [#, 370940, 1]]). -fb_tsv_pred_stats('most-frequent', fb_synonym, [2, [#, [#, 'Dana', 19302], [#, 'Dyak', 19532], [#, 'Dsim', 21050], [#, 'Dpse', 22860], [#, 'Scer', 30891], [#, 'Ssss', 158119], [#, 'Dmel', 551458]]]). -fb_tsv_pred_stats('less-frequent', fb_synonym, [2, [#, [#, 'Ppla', 1], [#, 'Dsch', 1], [#, 'Dmar', 1], [#, 'Dlev', 1], [#, 'Dalo', 1], [#, 'Abelson', 1], [#, 'Amag', 1]]]). -fb_tsv_pred_stats('most-frequent', fb_synonym, [3, [#, [#, 'P{eve-lacZ', 8], [#, 'P{ush-lacZ.-2190.-1421}', 10], [#, 'T(2;3)ul10', 11], [#, 'P{SUPor-P.PRE', 11], [#, 'P{Fab7-w', 17], [#, 'P{Mcp-ff', 18], [#, 'P{Mcp-w', 55]]]). -fb_tsv_pred_stats('less-frequent', fb_synonym, [3, [#, [#, '\\03b1-Spec[2]', 1], [#, 'Dmoj\\GI20484', 1], [#, 'Dmoj\\GI20485', 1], [#, 'Dmoj\\GI20486', 1], [#, 'Dmoj\\GI20487', 1], [#, 'Dmoj\\GI20488', 1], [#, 'Dmoj\\GI20489', 1]]]). -fb_tsv_pred_stats('most-frequent', fb_synonym, [4, [#, [#, 'Amyrel', 174], [#, 'Saccharomyces cerevisiae UAS construct a of Schertel', 180], [#, 'mt:CoII', 208], [#, 'Saccharomyces cerevisiae UAS construct a of Unknown', 215], [#, 'UAS construct a of Unknown', 235], [#, 'Deficiency (1) yellow Terminal', 251]]]). -fb_tsv_pred_stats('less-frequent', fb_synonym, [4, [#, [#, 'lethal (3) rI327', 1], [#, 'Secretory Pathway Calcium atpase', 1], [#, 'transfer RNA:Cysteine-GCA 4-1', 1], [#, 'Antioxidant 1 copper chaperone', 1], [#, 'ACAT-related protein required for viability 1', 1], [#, 'ER membrane protein complex subunit 10', 1], [#, 'Structural maintenance of chromosomes 5', 1]]]). -fb_tsv_pred_stats('most-frequent', fb_synonym, [5, [#, [#, 'cytochrome oxidase II', 33], [#, microsatellite, 39], [#, 'yolk protein 1', 43], [#, 'faint little ball', 43], [#, '28S ribosomal RNA', 75], [#, 'alcohol dehydrogenase', 89]]]). -fb_tsv_pred_stats('less-frequent', fb_synonym, [5, [#, [#, 'Golgin-84 ortholog|Golgin84', 1], [#, 'INACTIVE|Inactive|inactive', 1], [#, 'lethal (3) 01640', 1], [#, 'female sterile(3)272-9|humpty dumpty|lethal (3) 82Ff|lethal (3) 82Fk', 1], [#, fritz, 1], [#, 'Or46a', 1], [#, 'Gr36a', 1]]]). -fb_tsv_pred_stats('most-frequent', fb_synonym, [6, [#, [#, 'mt:CoII', 159], [#, 'Amyrel', 164], [#, 1360.0, 208], [#, 'Adh', 232], [#, unspecified, 259], [#, 'INE-1', 2235]]]). -fb_tsv_pred_stats('less-frequent', fb_synonym, [6, [#, [#, 'GA15920|dpse_GLEANR_14759', 1], [#, 'GM24315|dsec_GLEANR_7324', 1], [#, 'GM24316|dsec_GLEANR_7325', 1], [#, 'GM24317|dsec_GLEANR_7326', 1], [#, 'GM24318|dsec_GLEANR_7327', 1], [#, 'GM24319|dsec_GLEANR_7328', 1], [#, 'GM24320|dsec_GLEANR_7329', 1]]]). -fb_tsv_pred_stats('num-columns', transposon_sequence_se, [6]). -fb_tsv_pred_stats('duplicated-rows', transposon_sequence_se, [13]). -fb_tsv_pred_stats('total-rows', transposon_sequence_se, [13564]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [1, 13382, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [2, 1, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [3, 1, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [4, 27, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [5, 121, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_se, [6, 22, object]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_se, [2, '', 170]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [2, 170, [#, ''], [#, 170]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_se, [3, '', 170]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [3, 170, [#, ''], [#, 170]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_se, [4, '', 127]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [4, 127, [#, ''], [#, 127]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_se, [5, '', 17]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [5, 17, [#, ''], [#, 17]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_se, [6, '', 16]). -fb_tsv_pred_stats('missing-values', transposon_sequence_se, [6, 16, [#, ''], [#, 16]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [1, [#, [#, 'AGCATTTGGCCGGAAGCTCATGCATAGCCGGCAGAAGCTCTGCGCATTGGCAGAGGCCGC', 2], [#, 'TG', 2], [#, 'AGGTCGAGCTAAATACTTTTCATGCCTTGACTTGATGTCAGGTTTCCATCAAATAGAACT', 2], [#, 'GCGGGTTAGCTGAACCCAACTTCAGCACACTTTGATCATTCGAATAAACAGATTCAAACA', 2], [#, 'AA', 3], [#, 'A', 3], [#, '>FBte', 170]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [1, [#, [#, 'GTGACATATCCATAAGTCCCTAAGACTTAAGCATATGCCTACATACTAATACACTTACAA', 1], [#, 'CCTTTATTTAAAGACAAAACAAATTGGAACATGTTTCGCGACATTTTGGAACAGAATAGG', 1], [#, 'AATATAAATATCTCTCTAAAGACAAACAACGCACTAGACTCCGGAGTAGCATATTTAAAT', 1], [#, 'GAGAACATCATAGATGCAGCAACGCAATCGACACCATCTATAAAAATGAAATGAGAAAAA', 1], [#, 'TCAGGCAAAAGCGTACACTTAGGAGGATACGGCAAAGGACTAGGCATCCAGAAGATAAAA', 1], [#, 'ACAAACTAAATAGAGCAACAGACGAGCTCAAGAGAACTCTCAGGGAAGACAAAGATAACC', 1], [#, 'GACTTCAATACTACCTTAGCAAACTTGAGACTACCTTATCTACAAATTATTCCCTGTGGA', 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [2, []]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [2, []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [3, []]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [3, []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [4, [#, [#, 1483.0, 1], [#, 1481.0, 1], [#, 1316.0, 1], [#, 1144.0, 1], [#, 12.0, 3], [#, 1.0, 16]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [4, [#, [#, 1136.0, 1], [#, 1481.0, 1], [#, 1483.0, 1], [#, 1482.0, 1], [#, 1122.0, 1], [#, 1188.0, 1], [#, 1487.0, 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [5, [#, [#, 66.0, 2], [#, 7.0, 2], [#, 8.0, 2], [#, 3.0, 3], [#, 6.0, 3], [#, 1.0, 3]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [5, [#, [#, 958.0, 1], [#, 158.0, 1], [#, 536.0, 1], [#, 19.0, 1], [#, 284.0, 1], [#, 588.0, 1], [#, 647.0, 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_se, [6, [#, [#, 23.0, 1], [#, 88.0, 1], [#, 8.0, 2], [#, 2.0, 2], [#, 3.0, 2], [#, 9.0, 2]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_se, [6, [#, [#, 7.0, 1], [#, 39.0, 1], [#, 4.0, 1], [#, 6.0, 1], [#, 17.0, 1], [#, 44.0, 1], [#, 5.0, 1]]]). -fb_tsv_pred_stats('num-columns', transposon_sequence_set, [9]). -fb_tsv_pred_stats('duplicated-rows', transposon_sequence_set, [1]). -fb_tsv_pred_stats('total-rows', transposon_sequence_set, [749]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [1, 173, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [2, 1, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [3, 32, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [4, 389, int64]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [5, 600, int64]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [6, 1, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [7, 3, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [8, 2, object]). -fb_tsv_pred_stats('unique-values', transposon_sequence_set, [9, 344, object]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [1, 0, [], []]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [2, '.', 749]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [2, 749, [#, '.'], [#, 749]]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [3, 0, [], []]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [4, 0, [], []]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [5, 0, [], []]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [6, '.', 749]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [6, 749, [#, '.'], [#, 749]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, -, 2]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, +, 576]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [7, '.', 171]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [7, 749, [#, -, +, '.'], [#, 2, 576, 171]]). -fb_tsv_pred_stats('null-value-count', transposon_sequence_set, [8, '.', 171]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [8, 171, [#, '.'], [#, 171]]). -fb_tsv_pred_stats('missing-values', transposon_sequence_set, [9, 0, [], []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000176', 11], [#, 'FBte0001207', 12], [#, 'FBte0000021', 12], [#, 'FBte0000109', 12], [#, 'FBte0000037', 13], [#, 'FBte0000675', 14], [#, 'FBte0000322', 17]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [1, [#, [#, 'FBte0000948', 1], [#, 'FBte0001188', 1], [#, 'FBte0000890', 1], [#, 'FBte0000599', 1], [#, 'FBte0000793', 1], [#, 'FBte0000139', 1], [#, 'FBte0000407', 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [2, []]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [2, []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [3, [#, [#, start_codon, 50], [#, non_LTR_retrotransposon, 53], [#, terminal_inverted_repeat, 56], [#, three_prime_LTR, 66], [#, 'LTR_retrotransposon', 67], [#, five_prime_LTR, 67], [#, 'CDS', 227]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [3, [#, [#, region, 1], [#, dinucleotide_repeat_microsatellite_feature, 1], [#, retrotransposon, 1], [#, pseudogene, 1], [#, tetranucleotide_repeat_microsatellite_feature, 1], [#, transposable_element, 1], [#, 'SINE-like elements', 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [4, [#, [#, 1074, 3], [#, 8236, 3], [#, 172, 3], [#, 2, 3], [#, 5145, 4], [#, 331, 4], [#, 1, 285]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [4, [#, [#, 1919, 1], [#, 282, 1], [#, 946, 1], [#, 7248, 1], [#, 6957, 1], [#, 5953, 1], [#, 3811, 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [5, [#, [#, 1286, 3], [#, 1728, 3], [#, 452, 3], [#, 12, 3], [#, 5034, 3], [#, 9092, 3], [#, 5519, 3]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [5, [#, [#, 600, 1], [#, 119, 1], [#, 424, 1], [#, 1593, 1], [#, 5642, 1], [#, 2624, 1], [#, 2562, 1]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [6, []]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [6, []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [7, []]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [7, []]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [8, [#, [#, 1.0, 578]]]). -fb_tsv_pred_stats('most-frequent', transposon_sequence_set, [9, [#, [#, 'Ontology_term=SO:0000205', 12], [#, 'Ontology_term=SO:0000551', 24], [#, 'Ontology_term=SO:0000318', 50], [#, 'Ontology_term=SO:0000481', 56], [#, 'Ontology_term=SO:0000316', 62], [#, 'Ontology_term=SO:0000426', 67], [#, 'Ontology_term=SO:0000425', 68]]]). -fb_tsv_pred_stats('less-frequent', transposon_sequence_set, [9, [#, [#, 'ID=FBte0001033;name=Dmel\\mariner2;source=?;type=DNA;subtype=Tc1-Mariner', 1], [#, 'ID=FBte0000773;name=Dana\\Tom;source=Z24451;type=?;subtype=?', 1], [#, 'ID=FBte0000591;name=Dmel\\invader6;source=NT_033778;type=LTR;subtype=Gypsy', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\pol;translation=KKCKASLDYISSIPTGPRDPRPFLPMRLLNCLVYGLLDSGASISCIGGGVVQAAMENEKFKSLIGEAATADGNSQRIVGLLKIEVEYGDIKKLLKLYVVPSLKQDLYLGIDFWKLYDLLPANLKIAEILSPEPNQQTVVDQHELCEGDKAKLANVINCFPSFSQEGLGKTNLVSHSIDVGTARPVKQRHFPVSPAVEKAMYAEIDRMLRLGVIGESESAWSSPIVMVTKPGKVRICLECRKVNSFTEMDAYPLPQINGILSRLPRAEYISSLDLKDAYWQVPLDPKSRDKTAFTVPGRPLYQFKVMPFGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLIVSSCFESHLNVLRELALQIKRAGLTLNVAKSHFCMRRVRYLGHIIGDGGIRTDPEKVSAITDFPLPKSLKSLRSFMGLCGWYRKFVANFATLSAPLTDLMTTKRKFLLTKEAIEAFSKLKECLSKAPVLCSPDFAKPFAIHCDASKSGVGAVLVQVSEEGDERPIAFVSKKLNKAQRNYTVTEQECLAAIVALKNFRAYVEGLPFKIITDHASLKWLMSNHDLNSRLARWALALQRFKFEIEHRKGSLNVVPDTLSRVNEEIVAAMDLQEDLIVDFDSEFFQSGDYVKLVETVKENTSNFSDLKVESGFLYRKAEHLTGERMHDEYAWKLWVPKELVSKILARAHDSPLAAHGGIHKTLERIRRYYFWPGLVSDVRAYISACEVCKSTKSQNFTLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNIGIFIVLDHFSKYVFLKPVKKIDSSVVIKYLEDELFMTFGVPEVILSDNGSQFRARTFQRLIRYGVKHTLTAVHSPQANASERVNRSVIAAIRAYLRLDQKDWDEFLSRICCALRSAVHSSIGTSPYYMVFGQHMITSGSTYSLIRRLNLLDDRSLKFDRHESFEIMRKQAVDQMRNKHNENEKRCNIRSRVVSFVEGQEVYREISSQAVSKPVTTPSLDRRS', 1], [#, 'Ontology_term=SO:0000316;db_xref=FLYBASE:FBgnXXXXXXX;name=Dmel\\gypsy12\\gag;translation=MGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATERVGRETRSKTKNRRNSRRGSFDISQRCGEKLAVKLKIAATVDGGPSTSASGANANEASSSAVSANAALLAMERRLLATLSEKMADLVQNAITSSMQRIMPTPSPAVVVTASEMSADHPNAYERQYLASPNPVPSPRSASSDLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNISVLFEGKANDFFWRYHKFDRVATMGTERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKLVRVLRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYEAENDIESFSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAARNQSTMTDQ', 1], [#, 'ID=FBte0001136;name=Dmel\\gypsy12;source=AE003789;type=LTR;subtype=Gypsy', 1], [#, 'ID=FBte0001041;name=Dmel\\gypsy11;source=?;type=LTR;subtype=Gypsy', 1]]]). - -:- forall(fb_tsv_pred_stats(P,A1,Rest), (G=..[P,A1|Rest],assert(G))). diff --git a/metta_vspace/pyswip_lng/flybase_learn.pl b/metta_vspace/pyswip_lng/flybase_learn.pl new file mode 120000 index 00000000..32eb0e05 --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_learn.pl @@ -0,0 +1 @@ +../pyswip/flybase_learn.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_main.pl b/metta_vspace/pyswip_lng/flybase_main.pl deleted file mode 100755 index 1cd5fefa..00000000 --- a/metta_vspace/pyswip_lng/flybase_main.pl +++ /dev/null @@ -1,3263 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). -:- multifile(fb_pred/2). -:- discontiguous(fb_pred/2). -:- dynamic(fb_pred/2). - - -:- ensure_loaded(swi_support). - - -fb_stats:- metta_stats,!. - -'&flybase':for_metta('&flybase',P):- fb_pred_nr(F,A),current_predicate(F/A),length(L,A),P=[F|L],apply(F,L). - -% ============== -% OBO LOADER -% ============== -:- set_option_value(encoding,utf8). -:- ensure_loaded(flybase_obo). - - -:- ensure_loaded(metta_interp). - - -create_flybase_qlf:- - shell('swipl -g "qcompile(whole_flybase)'). - -create_flybase_pl(_FtpDir):- create_flybase_pl. - -create_flybase_pl:- - all_data_once, - % all_metta_once, - load_flybase_full, - all_data_done. - % all_metta_done, - %shell('mv whole_metta.pl whole_flybase.pl'). - -create_flybase_pl_tiny:- - all_data_once, - % all_metta_once, - load_flybase_tiny, - all_data_done, - % all_metta_done, - shell('mv whole_metta.pl tiny_flybase.pl'). - -save_to_pl:- tell('flybase_metta.pl'), - forall(fb_pred(F,A),listing(F/A)),told. - - -real_assert(OBO):- is_converting, \+ is_loading_file(_File), !, throw(real_assert(OBO)). -real_assert(OBO):- - ignore(real_assert1(OBO)), - real_assert2(OBO). - -%real_assert(OBO):- is_converting,!,print_src(OBO). -real_assert1(OBO):- all_metta_to(Out),!,with_output_to(Out,print_src(OBO)). -real_assert2(OBO):- all_data_to(Out),!,write_canonical(Out,OBO),!,writeln(Out,'.'). -real_assert2(OBO):- is_converting,!,throw(real_assert2(OBO)). -real_assert2(OBO):- call(OBO),!. -real_assert2(OBO):- assert(OBO). - -print_src(OBO):- format('~N'), uncompound(OBO,Src),!, write_srcH(Src). -write_srcH([F|Args]):- write('( '),write_src(F),maplist(write_srcE,Args),writeln(' )'). -write_srcE(Arg):- write(' '),write_src(Arg). - - - -is_loading_file(File):- nb_current(loading_file,File),File\==[],!. -is_loading_file(File):- nb_current(saving_file,File),File\==[]. - - - -all_data_once:- is_loading_file(_File),!. -all_data_once:- nb_setval(saving_file,'whole_metta'), - all_data_to(Out), - writeln(Out,':- encoding(utf8).'), - writeln(Out,':- style_check(-discontiguous).'), - flush_output(Out),!, - all_data_preds. -all_data_preds:- - all_data_to(Out), with_output_to(Out,all_data_preds0),!. -all_data_preds. -all_data_preds0:- - listing_c(table_n_type/3), - listing_c(load_state/2), - listing_c(is_loaded_from_file_count/2), - listing_c(fb_pred/2), - listing_c(fb_arg_type/1), - listing_c(fb_arg_table_n/3), - listing_c(fb_arg/1), - listing_c(done_reading/1),!. -:- dynamic(is_all_data_to/2). - - -all_data_to(Out):- once((is_all_data_to(File1,Out1),is_loading_file(File2))),File1==File2,!, Out = Out1. -all_data_to(Out):- is_all_data_to(File1,Out1),is_loading_file(File2),!, - close(Out1), atom_concat(File2,'.metta.datalog.tmp',File2Data), - open(File2Data,write,Out2,[alias(all_data),encoding(utf8),lock(write)]), - retract(is_all_data_to(File1,Out1)),assert(is_all_data_to(File2,Out2)), - fbug(all_data_to_switch(File1,File2)),!, - Out = Out2. -all_data_to(Out):- is_all_data_to(_File1,Out),!. -all_data_to(Out):- is_converting, is_loading_file(File2),!, atom_concat(File2,'.metta.datalog.tmp',File2Data), - open(File2Data,write,Out2), assert(is_all_data_to(File2,Out2)), - fbug(all_data_to(File2)),!, - Out = Out2. - -all_data_done:- - all_data_preds, - nb_delete(saving_file), - all_metta_done, - forall(retract(is_all_data_to(_,Out)), catch_ignore(close(Out))). - -:- if(is_converting). -:- at_halt(all_data_done). -:- endif. - -listing_c(F/A):- - format('~N~q.~n',[:-multifile(F/A)]), - format('~q.~n',[:-dynamic(F/A)]), - functor(P,F,A), - catch(forall(P,format('~q.~n',[P])),E, fbug(caused(F/A,E))). - - -:- dynamic(is_all_metta_to/2). -all_metta_to(Out):- once((is_all_metta_to(File1,Out1),is_loading_file(File2))),File1==File2,!, Out = Out1. -all_metta_to(Out):- is_all_metta_to(File1,Out1),is_loading_file(File2),!, - close(Out1), atom_concat(File2,'.metta.tmp',File2Data), - open(File2Data,write,Out2,[alias(all_metta),encoding(utf8),lock(write)]), - retract(is_all_metta_to(File1,Out1)),assert(is_all_metta_to(File2,Out2)), - fbug(all_metta_to_switch(File1,File2)),!, - Out = Out2. -all_metta_to(Out):- is_all_metta_to(_File1,Out),!. -all_metta_to(Out):- is_loading_file(File2),!, atom_concat(File2,'.metta.tmp',File2Data), - open(File2Data,write,Out2), assert(is_all_metta_to(File2,Out2)), - fbug(all_metta_to(File2)),!, - Out = Out2. - -all_metta_done:- - forall(retract(is_all_metta_to(_,Out)), catch_ignore(close(Out))). - - - - - -loaded_from_file_count(X):- flag(loaded_from_file_count,X,X). -incr_file_count(X):- flag(loaded_from_file_count,X,X+1), flag(total_loaded_symbols,TA,TA+1), flag(total_loaded_atoms,TA,TA+1). - -should_cache:- fail, loaded_from_file_count(X), option_else(max_disk_cache,Num,1000), X==Y. -should_fix_args :- fail, \+ should_sample. -should_sample :- !, fail. -should_sample :- should_show_data(_),!. -should_sample :- - once(option_value(samples_per_million,Fifty);Fifty=50), loaded_from_file_count(X), Y is X mod 1_000_000,!, Y >= 0, Y =< Fifty,!. -should_show_data(X):- loaded_from_file_count(X),!, - once((X=<13,X>=10); (X>0,(0 is X rem 1_000_000))), - format(user_error,'~N',[]), - format(user_output,'~N',[]),!, - heartbeat. -should_show_data(X):- nb_current(loading_file,F),F\==[],symbol_concat(_,'.obo',F), - loaded_from_file_count(X),Y is X mod 100_000, Y=<15,Y>=10. - - -% ============== -% VSPACE LOADER -% ============== -%:- set_option_value(max_per_file,10_000_000). -%:- set_option_value(max_per_file,1_000). -%:- set_option_value(max_per_file,300). -%:- set_option_value(max_per_file,inf+1). -:- set_option_value(max_per_file,0). -%:- set_option_value(max_per_file,20_000). -%:- set_option_value(max_per_file,20_000_000_000_000_000_000_000_000_000_000_000). -% load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'). -:- set_option_value(max_disk_cache,1000). -:- set_option_value(samples_per_million,30). -:- set_option_value(full_canon,true). - - -flybase_identifier('FBab', 'Aberration'). -flybase_identifier('FBal', 'Allele'). -flybase_identifier('FBba', 'Balancer'). -flybase_identifier('FBbt', 'AnatomyTerm'). -flybase_identifier('FBch', 'ChromosomeArm'). -flybase_identifier('FBcl', 'Clone'). -flybase_identifier('FBcv', 'ControlledVocabulary'). -flybase_identifier('FBdv', 'DevelopmentalStageTerm'). -flybase_identifier('FBgg', 'GeneGroup'). -flybase_identifier('FBgn', 'Gene'). -flybase_identifier('FBhh', 'HumanDisease'). -flybase_identifier('FBig', 'GeneInteraction'). -flybase_identifier('FBim', 'Image'). -flybase_identifier('FBlc', 'LargeDatasetMetadata'). -flybase_identifier('FBmc', 'MolecularConstruct'). -flybase_identifier('FBms', 'MolecularSegment'). -flybase_identifier('FBpl', 'Probe'). -flybase_identifier('FBpp', 'Polypeptide'). -flybase_identifier('FBrf', 'Reference'). -flybase_identifier('FBsf', 'SequenceFeature'). -flybase_identifier('FBsn', 'GeneStrain'). -flybase_identifier('FBst', 'GeneStock'). -flybase_identifier('FBtc', 'CellLine'). -flybase_identifier('FBti', 'TransposableIlementInsertion'). -flybase_identifier('FBto', 'ExperimentalTool'). -flybase_identifier('FBte', 'TransgenicElement'). -flybase_identifier('FBtp', 'Transposon'). %flybase_identifier('FBtp', 'transgenic construct or natural transposon'). -flybase_identifier('FBtr', 'Transcript'). - -% FlyBase prefixes -symbol_prefix(Prefix, flybase, Desc):- flybase_identifier(Prefix, Desc). -% Some common OBO prefixes (Note: these are more generalized and not specific to FlyBase) -symbol_prefix('GO', obo, 'Gene Ontology'). -symbol_prefix('PO', obo, 'Plant Ontology'). -symbol_prefix('DOID', obo, 'Disease Ontology'). -symbol_prefix('UBERON', obo, 'Uber-anatomy ontology'). -symbol_prefix('CHEBI', obo, 'Chemical Entities of Biological Interest'). - - -%:- abolish(gp_information/0). -:- forall(retract(fb_pred(F,0)),abolish(F/0)). -:- include(flybase_learn). - -%fbd(X,P):- fb_pred(F,A),functor(P,F,A),arg(_,P,X), no_repeats(P,call(P)). -fbdead:- fb_pred_nr(F,A),functor(P,F,A),arg(_,P,xxxxxxxxxxxxxxxxx),no_repeats(P,call(P)), - writeln(fbdead=P),fail. -fbdead. - -:- use_module(library(csv)). - -%:- current_prolog_flag(libswipl,_)->use_module(library(logicmoo_utils)); true. - - - - - -/* mined -; Total Atoms (Atomspace size): .................................................. 56,354,849 -; ConceptNodes: ............................................................. 9,472,616 -; Bytes Per Atom (Average): ....................................................... 140 -; Bytes Per ConceptNode (Average): ................................................ 120 -; Relational Memory: ............................................................ 7.39G -; ConceptNode Memory: ........................................................... 1.07G -; Atoms per minute: ......................................................... 3,491,880 -; Total Physical Memory Used: ................................................... 9.08G -; Runtime (days:hh:mm:ss): ................................................. 0:00:16:08 - - -; Total Atoms (Atomspace size): .................................................. 38,812,356 -; ConceptNodes: ............................................................. 9,380,821 -; Total Memory Used: ............................................................ 8.26G -; Runtime (days:hh:mm:ss): ................................................. 0:00:19:15 - - -; Total Atoms (Atomspace size): .................................................. 38,822,366 -; ConceptNodes: ............................................................. 9,824,355 -; Random samples: ................................................................. 805 -; Total Memory Used: ............................................................ 8.18G -; Runtime (days:hh:mm:ss): ................................................. 0:00:08:28 - -*/ - -recount_total_loaded_symbols:- flag(total_loaded_symbols,_,0),full_atom_count(Was),flag(total_loaded_symbols,_,Was). - -% Convert flybase data from CSV to Prolog format. -load_flybase:- is_scryer,!,load_flybase_files. -load_flybase:- - with_option(mettafiles,false, - (make,recount_total_loaded_symbols,!,load_flybase_files,!,cleanup_arities,!,fb_stats)). -load_flybase_dirs:- - load_flybase('./data/ftp.flybase.net/releases/current/das_precomputed/*'), - load_flybase('./precomputed_files/*'), - load_flybase('./data/ftp.flybase.net/releases/current/./*sv'),!. - - - -/* - -declare -a StringArray=(\ -"fbgn_fbtr_fbpp_expanded_*.tsv.gz" \ -"physical_interactions_mitab*.tsv.gz" \ -"dmel_gene_sequence_ontology_annotations*.tsv.gz" \ -"gene_map_table_*.tsv.gz" \ -"ncRNA_genes_fb_*.json.gz" \ -"gene_association.fb.gz" \ -"gene_genetic_interactions_*.tsv.gz" \ -"allele_genetic_interactions_*.tsv.gz" \ -"allele_phenotypic_data_*.tsv.gz" \ -"disease_model_annotations*.tsv.gz" \ -"dmel_human_orthologs_disease*.tsv.gz" \ -"fbrf_pmid_pmcid_doi*.tsv.gz") -*/ - -load_flybase_files:- - ftp_data(Dir), - with_cwd(Dir,load_flybase_files_ftp). - - - -load_flybase_das_11:- - % DAS''s 11 tsv and 1 json file - load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), - load_flybase('./precomputed_files/*/fbgn_fbtr_fbpp_expanded*.tsv'), - load_flybase('./precomputed_files/*/physical_interactions_mitab*.tsv'), - load_flybase('./precomputed_files/*/dmel_gene_sequence_ontology_annotations*.tsv'), - load_flybase('./precomputed_files/*/gene_map_table*.tsv'), - load_flybase('./precomputed_files/*/gene_association_*.fb',tsv), - load_flybase('./precomputed_files/*/gene_genetic_interactions*.tsv'), - load_flybase('./precomputed_files/*/allele_genetic_interactions*.tsv'), - % Note: this file replaces 'allele_phenotypic_data_*.tsv' from FB2023_01 onward. - load_flybase('./precomputed_files/alleles/genotype_phenotype_data*.tsv'), - load_flybase('./precomputed_files/*/allele_phenotypic_data*.tsv'), - - - load_flybase('./precomputed_files/*/disease_model_annotations*.tsv'), - load_flybase('./precomputed_files/*/dmel_human_orthologs_disease*.tsv'), - load_flybase('./precomputed_files/*/fbrf_pmid_pmcid_doi*.tsv'), - format("~n================================================================================================="), - format("~n=====================================Das Checkpoint=============================================="), - format("~n================================================================================================="), - fb_stats, - format("~n================================================================================================="), - format("~n================================================================================================="), - format("~n=================================================================================================~n"), - !. - -load_flybase_files_ftp:- - maplist(must_det_ll,[ - load_flybase('./precomputed_files/collaborators/pmid_fbgn_uniprot*.tsv'), - - %% load_flybase_obo_files, - load_flybase_das_11, - % 36 more that DAS doesnt load - - load_flybase_obo_files, - - load_flybase('./precomputed_files/alleles/fbal_to_fbgn*.tsv'), - - load_flybase('./precomputed_files/clones/cDNA_clone_data*.tsv'), - load_flybase('./precomputed_files/clones/genomic_clone_data*.tsv'), - load_flybase('./precomputed_files/collaborators/fbgn_uniprot*.tsv'), - load_flybase('./precomputed_files/collaborators/gp_information*.fb'), - load_flybase('./precomputed_files/genes/automated_gene_summaries*.tsv'), - load_flybase('./precomputed_files/genes/best_gene_summary*.tsv'), - load_flybase('./precomputed_files/genes/Dmel_enzyme_data*.tsv'), - load_flybase('./precomputed_files/genes/dmel_unique_protein_isoforms*.tsv'), - load_flybase('./precomputed_files/genes/fbgn_annotation_ID*.tsv'), - with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy1_overlaps*.tsv')), - with_option([pred_va='True'],load_flybase('./precomputed_files/genes/fbgn_exons2affy2_overlaps*.tsv')), - with_option([pred_va=false],load_flybase('./precomputed_files/genes/fbgn_fbtr_fbpp*.tsv')), - load_flybase('./precomputed_files/genes/fbgn_gleanr*.tsv'), - load_flybase('./precomputed_files/genes/fbgn_NAseq_Uniprot*.tsv'), - load_flybase('./precomputed_files/genes/gene_functional_complementation*.tsv'), - load_flybase('./precomputed_files/genes/gene_group_data*.tsv'), - load_flybase('./precomputed_files/genes/gene_groups_HGNC*.tsv'), - load_flybase('./precomputed_files/genes/gene_rpkm_matrix*.tsv'), - load_flybase('./precomputed_files/genes/gene_rpkm_report*.tsv'), - load_flybase('./precomputed_files/genes/gene_snapshots*.tsv'), - load_flybase('./precomputed_files/genes/pathway_group_data*.tsv'), - %load_flybase('./precomputed_files/insertions/construct_maps.zip'), - load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'), - load_flybase('./precomputed_files/insertions/insertion_mapping*.tsv'), - load_flybase('./precomputed_files/map_conversion/cyto-genetic-seq*.tsv'), - load_flybase('./precomputed_files/metadata/dataset_metadata*.tsv'), - load_flybase('./precomputed_files/orthologs/dmel_paralogs*.tsv'), - load_flybase('./precomputed_files/references/entity_publication*.tsv'), - load_flybase('./precomputed_files/species/organism_list*.tsv'), - load_flybase('./precomputed_files/stocks/stocks_FB*.tsv'), - load_flybase('./precomputed_files/synonyms/fb_synonym*.tsv'), - format("~n================================================================================================="), - format("~n==========================Should be 18 minute Checkpoint========================================="), - format("~n================================================================================================="), - fb_stats, - format("~n================================================================================================="), - format("~n================================================================================================="), - format("~n=================================================================================================~n"), - load_flybase('./precomputed_files/map_conversion/cytotable.txt',tsv), - load_flybase('./precomputed_files/map_conversion/genome-cyto-seq.txt',tsv), - load_fbase_after_17]), - !. - - gene_sequences:- - load_flybase('./dmel_r6.55/gff/dmel-all-r6.55.gff'), - load_flybase('./dmel_r6.55/fasta/*.fasta'), - load_flybase('./dmel_r6.55/gtf/*.gft'),!. - - -load_fbase_after_17:- - %load_flybase('./precomputed_files/genes/scRNA-Seq_gene_expression*.tsv'), - must_det_ll(load_flybase('./precomputed_files/transposons/transposon_sequence_set.gff*')), - load_flybase('./precomputed_files/transposons/transposon_sequence_set.fa'), - load_flybase('./precomputed_files/*/ncRNA_genes_fb_*.json'), - load_obo_files, - %% load_flybase_chado, - !. - -load_flybase_obo_files:- - load_flybase('./data/*/*/*.scm'), - load_flybase('./precomputed_files/ontologies/doid.obo'), - load_flybase('./precomputed_files/ontologies/fly_anatomy.obo'), - load_flybase('./precomputed_files/ontologies/fly_development.obo'), - load_flybase('./precomputed_files/ontologies/flybase_controlled_vocabulary.obo'), - load_flybase('./precomputed_files/ontologies/flybase_stock_vocabulary.obo'), - load_flybase('./precomputed_files/ontologies/gene_group_FB*.obo'), - load_flybase('./precomputed_files/ontologies/go-basic.obo'), - load_flybase('./precomputed_files/ontologies/image.obo'), - load_flybase('./precomputed_files/ontologies/psi-mi.obo'), - load_flybase('./precomputed_files/ontologies/slice.chebi.obo'), - load_flybase('./precomputed_files/ontologies/so-simple.obo'), - load_flybase('./precomputed_files/ontologies/chebi_fb_*.obo'), - !. - - - -/* -:- ensure_loaded('./reqs/obo_core/prolog/obo_core/goslim.pl'). -:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata.pl'). -:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/iao_metadata.pl'). -:- ensure_loaded('./reqs/obo_metadata/prolog/obo_metadata/oio.pl'). -:- ensure_loaded('./reqs/obo_ro/prolog/obo_ro/ro.pl'). - -:- attach_packs('./reqs',[]). -:- ensure_loaded(library(obo_metadata)). -:- goslim:ensure_loaded(library(obo_core/goslim)). -:- ensure_loaded(library(obo_ro/ro)). - -937_381_148 -*/ - - -/* -(load_fb_obo "data/ontologies/so.obo") - -; Total Atoms (Atomspace size): ...................................................... 19,967 -; ConceptNodes: ................................................................. 4,258 -; Random samples: ................................................................. 158 -; Total Memory Used: ........................................................ 1,089,408 -; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 - - - -(load_fb_obo "./precomputed_files/ontologies/so-simple.obo" ) - -; Total Atoms (Atomspace size): ...................................................... 19,484 -; ConceptNodes: ................................................................. 4,194 -; Random samples: ................................................................. 160 -; Total Memory Used: ........................................................ 1,089,408 -; Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 - - -*/ - -/* -?- xinfo('SO:0000797'). -ontology_info(id_type,'SO:0000797','Term'). -def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). -has_quality('SO:0000797','SO:0000782',' natural'). -intersection_of('SO:0000797','SO:0000101',' transposable_element'). -intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). -ontology_info(is_a,'SO:0000797','SO:0000101'). -ontology_info(is_a,'SO:0000797','SO:0001038'). -ontology_info(name,'SO:0000797',"natural_transposable_element"). -synonym('SO:0000797',"natural transposable element",'EXACT',[]). - - - -xinfo('SO:0000797'). -ontology_info(id_type,'SO:0000797','Term'). -def('SO:0000797',"TE that exists (or existed) in nature.",['FB:mc']). -has_quality('SO:0000797','SO:0000782',' natural'). -intersection_of('SO:0000797','SO:0000101',' transposable_element'). -intersection_of('SO:0000797',has_quality,'SO:0000782',' natural'). -ontology_info(is_a,'SO:0000797','SO:0000101'). -ontology_info(is_a,'SO:0000797','SO:0001038'). -ontology_info(name,'SO:0000797',"natural_transposable_element"). -synonym('SO:0000797',"natural transposable element",'EXACT',[]). - -*/ - -load_obo_files:- - %load_obo('./reqs/obonet/tests/data/?*.obo'), - - load_flybase('./precomputed_files/*/so*.obo'), - fb_stats, - load_flybase('./data/SO-Ontologies/Ontology_Files/*.obo'), - % Total Atoms (Atomspace size): ...................................................... 20,069 - % ConceptNodes: ................................................................. 4,200 - % Random samples: ................................................................. 159 - % Total Memory Used: ........................................................ 1,089,408 - % Runtime (days:hh:mm:ss): ................................................. 0:00:00:29 - - load_flybase('./data/SO-Ontologies/Ontology_Files/subsets/*.obo'), - % Total Atoms (Atomspace size): ...................................................... 20,551 - % ConceptNodes: ................................................................. 4,270 - % Random samples: ............................................................... 2,928 - % Total Memory Used: ........................................................ 1,154,944 - % Runtime (days:hh:mm:ss): ................................................. 0:00:00:40 - - load_flybase('./data/Legacy/Cross_Products/*.obo'), - %load_flybase('./data/*/*/*.obo'), - - % Total Atoms (Atomspace size): ...................................................... 20,968 - % ConceptNodes: ................................................................. 4,306 - % Random samples: .............................................................. 14,418 - % Total Memory Used: ........................................................ 9,828,592 - % Runtime (days:hh:mm:ss): ................................................. 0:00:01:14 - %print_loaded_from_files, - %loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). - % only reflects new entries ... thus full OBO adds 481 entries to the simple one - %loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). - - %loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). - %loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). - %loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). - %loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). - %loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). - %loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). - %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). - %loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). - - load_flybase('./precomputed_files/*/*.obo'), - % Total Atoms (Atomspace size): ................................................... 3,489,211 - % ConceptNodes: ............................................................... 688,541 - % Random samples: .............................................................. 26,006 - % Total Memory Used: ............................................................ 1.19G - % Runtime (days:hh:mm:ss): ................................................. 0:00:34:35 - print_loaded_from_files, -%loaded_from_file(2_637_502, './precomputed_files/ontologies/chebi_fb_2023_04.obo'). -%loaded_from_file( 451_168, './precomputed_files/ontologies/go-basic.obo'). -%loaded_from_file( 221_705, './precomputed_files/ontologies/fly_anatomy.obo'). -%loaded_from_file( 128_798, './precomputed_files/ontologies/doid.obo'). -%loaded_from_file( 19_515, './data/SO-Ontologies/Ontology_Files/so-simple.obo'). -%loaded_from_file( 9_852, './precomputed_files/ontologies/psi-mi.obo'). -%loaded_from_file( 8_644, './precomputed_files/ontologies/gene_group_FB2023_04.obo'). -%loaded_from_file( 7_605, './precomputed_files/ontologies/flybase_controlled_vocabulary.obo'). -%loaded_from_file( 1_598, './precomputed_files/ontologies/fly_development.obo'). -%loaded_from_file( 834, './precomputed_files/ontologies/image.obo'). -%loaded_from_file( 491, './precomputed_files/ontologies/flybase_stock_vocabulary.obo'). -%loaded_from_file( 481, './data/SO-Ontologies/Ontology_Files/so.obo'). -%loaded_from_file( 336, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-dec.obo'). -%loaded_from_file( 310, './data/SO-Ontologies/Ontology_Files/subsets/SOFA.obo'). -%loaded_from_file( 141, './data/SO-Ontologies/Ontology_Files/subsets/biosapiens.obo'). -%loaded_from_file( 73, './data/SO-Ontologies/Ontology_Files/subsets/Alliance_of_Genome_Resources.obo'). -%loaded_from_file( 35, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-non-classified.obo'). -%loaded_from_file( 31, './data/SO-Ontologies/Ontology_Files/subsets/DBVAR.obo'). -%loaded_from_file( 25, './precomputed_files/ontologies/so-simple.obo'). -%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp.obo'). -%loaded_from_file( 23, './data/SO-Ontologies/Legacy/Cross_Products/so-xp-simple.obo'). -%loaded_from_file( 21, './precomputed_files/ontologies/slice.chebi.obo'). - !. - - - - - - -load_flybase_chado:- % 359 tables with 937,381,148 rows - - with_option([row_1_is_header=true,max_per_file=100_000],load_flybase('./data/tsv_exports/public/*.tsv')). - - -est_size( 22_220_267, dataset_metadata). -est_size( 5_580_889, entity_publication). -est_size( 2_928_712, gene_rpkm_report). -est_size( 2_262_949, pmid_fbgn_uniprot). -est_size( 1_611_349, ontology_info). -est_size( 1_316_132, fbgn_NAseq_Uniprot). -est_size( 1_045_549, property_value). -est_size( 1_001_254, synonym). -est_size( 722_570, cDNA_clone). -est_size( 384_206, genotype_phenotype). -est_size( 363_453, allele_genetic_interactions). -est_size( 288_469, fbal_to_fbgn). -est_size( 245_829, gene_map_table). -est_size( 223_056, dmel_paralogs). -est_size( 212_010, insertion_mapping). -est_size( 174_894, fbgn_gleanr). -est_size( 147_155, stocks). -est_size( 99_294, fbrf_pmid_pmcid_doi). -est_size( 57_986, organism_list). -est_size( 51_248, physical_interactions_mitab). -est_size( 50_401, genomic_clone). -est_size( 38_591, dmel_gene_sequence_ontology_annotations). -est_size( 35_732, fbgn_fbtr_fbpp_expanded). -est_size( 35_732, fbgn_fbtr_fbpp). -est_size( 35_107, dmel_human_orthologs_disease). -est_size( 32_530, fbgn_uniprot). -est_size( 32_143, best_gene_summary). -est_size( 27_827, receives_synaptic_input_in_region). -est_size( 27_370, automated_gene_summaries). -est_size( 26_750, disease_model_annotations). -est_size( 22_453, dmel_unique_protein_isoforms). -est_size( 20_392, sends_synaptic_output_to_region). -est_size( 20_322, gene_genetic_interactions). -est_size( 17_901, fbgn_annotation_ID). -est_size( 17_748, gene_rpkm_matrix). -est_size( 14_139, part_of). -est_size( 13_986, gene_snapshots). -est_size( 13_394, seq). -est_size( 12_497, fbgn_exons2affy1_overlaps). -est_size( 13_746, fbgn_exons2affy2_overlaps). -est_size( 10_958, gene_group). -est_size( 5_680, has_synaptic_IO_in). -est_size( 3_969, 'Dmel_enzyme'). -est_size( 3_120, regulates). -est_size( 2_704, negatively_regulates). -est_size( 2_692, positively_regulates). -est_size( 2_126, has_soma_location). -est_size( 1_941, overlaps). -est_size( 1_744, develops_from). -est_size( 1_711, gene_groups_HGNC). -est_size( 1_149, sends_synaptic_output_to_cell). -est_size( 993, pathway_group). -est_size( 738, receives_synaptic_input_from_neuron). -est_size( 706, fasciculates_with). -est_size( 601, 'cyto-genetic-seq'). -est_size( 572, has_sensory_dendrite_in). -est_size( 526, continuous_with). -est_size( 464, gene_functional_complementation). -est_size( 311, synapsed_via_type_Ib_bouton_to). -est_size( 287, innervates). -est_size( 239, immediately_preceded_by). -est_size( 229, has_fasciculating_neuron_projection). -est_size( 200, synapsed_via_type_II_bouton_to). -est_size( 186, receives_synaptic_input_throughout). -est_size( 185, substage_of). -est_size( 165, has_quality). -est_size( 156, has_part). -est_size( 151, def). -est_size( 148, synapsed_via_type_Is_bouton_to). -est_size( 126, attached_to). -est_size( 100, subsetdef). -est_size( 89, receives_input_from). -est_size( 88, disjoint_from). -est_size( 74, sends_synaptic_output_throughout). -est_size( 68, develops_into). -est_size( 64, derives_from). -est_size( 30, has_origin). -est_size( 30, electrically_synapsed_to). -est_size( 23, develops_directly_from). -est_size( 20, attached_to_part_of). -est_size( 18, synonymtypedef). -est_size( 17, innervated_by). -est_size( 14, synapsed_via_type_III_bouton_to). -est_size( 11, has_synaptic_IO_throughout). -est_size( 9, transitive_over). -est_size( 8, composed_primarily_of). -est_size( 7, transcribed_to). -est_size( 7, inverse_of). -est_size( 6, conditionality). -est_size( 6, adjacent_to). -est_size( 4, non_functional_homolog_of). -est_size( 3, xref). -est_size( 3, variant_of). -est_size( 3, member_of). -est_size( 3, develops_from_part_of). -est_size( 3, contains). -est_size( 3, 'RO'). -est_size( 2, connected_to). -est_size( 1, transcribed_from). -est_size( 1, guided_by). -% SQL -sql_est_size( 248_392_753,feature_relationship). -sql_est_size( 141_933_326,dbxrefprop). -sql_est_size( 98_464_501,featureloc). -sql_est_size( 92_616_769,feature). -sql_est_size( 78_909_674,analysisfeature). -sql_est_size( 61_025_741,feature_dbxref). -sql_est_size( 53_031_862,library_featureprop). -sql_est_size( 39_950_319,dbxref). -sql_est_size( 27_923_221,library_feature). -sql_est_size( 23_805_221,feature_relationshipprop). -sql_est_size( 21_279_999,featureprop). -sql_est_size( 7_474_185,feature_synonym). -sql_est_size( 6_554_427,synonym). -sql_est_size( 5_578_280,feature_pub). -sql_est_size( 5_341_100,featureprop_pub). -sql_est_size( 4_865_118,feature_relationship_pub). -sql_est_size( 2_813_405,feature_interactionprop). -sql_est_size( 2_464_355,feature_cvterm). -sql_est_size( 1_950_807,feature_cvtermprop). -sql_est_size( 1_377_258,feature_interaction). -sql_est_size( 1_116_490,feature_genotype). -sql_est_size( 888_210,pubprop). -sql_est_size( 734_870,featureloc_pub). -sql_est_size( 688_734,pubauthor). -sql_est_size( 518_569,genotype_synonym). -sql_est_size( 495_848,genotype). -sql_est_size( 491_538,feature_pubprop). -sql_est_size( 466_209,phenstatement). -sql_est_size( 413_338,pub_dbxref). -sql_est_size( 382_054,genotype_dbxref). -sql_est_size( 351_942,phendesc). -sql_est_size( 277_992,phenotype_comparison_cvterm). -sql_est_size( 254_298,feature_expressionprop). -sql_est_size( 252_544,phenotype_comparison). -sql_est_size( 251_928,pub). -sql_est_size( 242_344,pub_relationship). -sql_est_size( 227_406,feature_expression). -sql_est_size( 213_360,cvterm_relationship). -sql_est_size( 212_142,cvterm_dbxref). -sql_est_size( 209_164,interaction_cvterm). -sql_est_size( 195_000,cvtermsynonym). -sql_est_size( 180_311,expression_cvterm). -sql_est_size( 167_582,update_track). -sql_est_size( 150_401,feature_relationshipprop_pub). -sql_est_size( 149_855,stockcollection_stock). -sql_est_size( 149_855,stock). -sql_est_size( 149_835,stock_genotype). -sql_est_size( 146_846,interactionprop). -sql_est_size( 122_004,interaction_group). -sql_est_size( 119_611,feature_interaction_pub). -sql_est_size( 112_784,interaction_pub). -sql_est_size( 112_781,interaction). -sql_est_size( 101_687,interaction_group_feature_interaction). -sql_est_size( 96_405,feature_grpmember_pub). -sql_est_size( 94_765,cvterm). -sql_est_size( 79_466,expression_cvtermprop). -sql_est_size( 74_873,interactionprop_pub). -sql_est_size( 73_828,library_interaction). -sql_est_size( 57_144,organism). -sql_est_size( 48_730,humanhealthprop). -sql_est_size( 41_075,feature_grpmember). -sql_est_size( 36_960,expression). -sql_est_size( 23_565,library_cvterm). -sql_est_size( 23_483,library_cvtermprop). -sql_est_size( 21_251,cvtermprop). -sql_est_size( 19_797,libraryprop). -sql_est_size( 18_396,phenotype). -sql_est_size( 17_871,phenotype_cvterm). -sql_est_size( 16_617,humanhealth_dbxrefprop). -sql_est_size( 16_529,interaction_expressionprop). -sql_est_size( 16_318,humanhealth_pub). -sql_est_size( 15_400,library_synonym). -sql_est_size( 15_355,humanhealth_dbxref). -sql_est_size( 15_142,cell_line_feature). -sql_est_size( 14_972,libraryprop_pub). -sql_est_size( 13_694,interaction_expression). -sql_est_size( 13_218,interaction_cell_line). -sql_est_size( 10_720,library_pub). -sql_est_size( 9_870,library_relationship). -sql_est_size( 9_851,humanhealthprop_pub). -sql_est_size( 9_558,library_dbxref). -sql_est_size( 8_339,library_relationship_pub). -sql_est_size( 7_095,grp_pub). -sql_est_size( 6_719,cell_line_pub). -sql_est_size( 6_657,grp_relationship). -sql_est_size( 6_605,strain_synonym). -sql_est_size( 5_990,grp_synonym). -sql_est_size( 5_947,humanhealth_synonym). -sql_est_size( 5_785,strainprop). -sql_est_size( 5_783,strainprop_pub). -sql_est_size( 5_769,library). -sql_est_size( 5_543,grp_cvterm). -sql_est_size( 5_444,cell_line_synonym). -sql_est_size( 5_277,library_expression). -sql_est_size( 5_187,grpprop). -sql_est_size( 5_159,grpmember). -sql_est_size( 4_469,humanhealth_dbxrefprop_pub). -sql_est_size( 4_450,library_expressionprop). -sql_est_size( 4_415,grpprop_pub). -sql_est_size( 4_319,stock_cvterm). -sql_est_size( 3_832,library_dbxrefprop). -sql_est_size( 3_829,grpmemberprop). -sql_est_size( 3_777,genotype_cvterm). -sql_est_size( 3_744,humanhealth_featureprop). -sql_est_size( 3_721,library_strainprop). -sql_est_size( 3_721,library_strain). -sql_est_size( 3_625,humanhealth_feature). -sql_est_size( 2_641,grp_dbxref). -sql_est_size( 2_263,humanhealth_relationship). -sql_est_size( 2_220,humanhealth_relationship_pub). -sql_est_size( 2_093,strain_pub). -sql_est_size( 2_010,grp_relationship_pub). -sql_est_size( 1_939,strain_cvtermprop). -sql_est_size( 1_939,strain_cvterm). -sql_est_size( 1_814,grp). -sql_est_size( 1_777,strain_dbxref). -sql_est_size( 1_776,strain). -sql_est_size( 1_739,organism_dbxref). -sql_est_size( 1_643,feature_humanhealth_dbxref). -sql_est_size( 1_540,humanhealth_cvtermprop). -sql_est_size( 1_540,humanhealth_cvterm). -sql_est_size( 1_515,humanhealth). -sql_est_size( 1_300,cell_lineprop_pub). -sql_est_size( 1_291,cell_lineprop). -sql_est_size( 1_215,cell_line_dbxref). -sql_est_size( 1_198,cell_line_libraryprop). -sql_est_size( 1_081,cell_line_library). -sql_est_size( 1_013,organism_pub). -sql_est_size( 821,organismprop). -sql_est_size( 731,organismprop_pub). -sql_est_size( 714,cell_line_cvterm). -sql_est_size( 518,db). -sql_est_size( 435,strain_relationship_pub). -sql_est_size( 435,strain_relationship). -sql_est_size( 320,cell_line). -sql_est_size( 308,analysis). -sql_est_size( 238,stockprop). -sql_est_size( 171,cell_line_relationship). -sql_est_size( 139,strain_featureprop). -sql_est_size( 139,strain_feature). -sql_est_size( 107,strain_phenotypeprop). -sql_est_size( 96,humanhealth_pubprop). -sql_est_size( 73,cell_line_cvtermprop). -sql_est_size( 71,cv). -sql_est_size( 54,strain_phenotype). -sql_est_size( 40,environment). -sql_est_size( 27,stockcollectionprop). -sql_est_size( 26,contact). -sql_est_size( 18,environment_cvterm). -sql_est_size( 11,organism_library). -sql_est_size( 7,stockcollection). -sql_est_size( 1,lock). -sql_est_size( 0,analysisgrp). -sql_est_size( 0,analysisgrpmember). -sql_est_size( 0,analysisprop). -sql_est_size( 0,audit_chado). -sql_est_size( 0,cell_line_strain). -sql_est_size( 0,cell_line_strainprop). -sql_est_size( 0,cvtermpath). -sql_est_size( 0,eimage). -sql_est_size( 0,expression_image). -sql_est_size( 0,expression_pub). -sql_est_size( 0,expressionprop). -sql_est_size( 0,feature_cvterm_dbxref). -sql_est_size( 0,feature_phenotype). -sql_est_size( 0,featuremap). -sql_est_size( 0,featuremap_pub). -sql_est_size( 0,featurepos). -sql_est_size( 0,featurerange). -sql_est_size( 0,genotype_cvtermprop). -sql_est_size( 0,genotype_pub). -sql_est_size( 0,genotypeprop). -sql_est_size( 0,genotypeprop_pub). -sql_est_size( 0,grp_pubprop). -sql_est_size( 0,grp_relationshipprop). -sql_est_size( 0,grpmember_cvterm). -sql_est_size( 0,grpmember_pub). -sql_est_size( 0,grpmemberprop_pub). -sql_est_size( 0,humanhealth_phenotype). -sql_est_size( 0,humanhealth_phenotypeprop). -sql_est_size( 0,interaction_cvtermprop). -sql_est_size( 0,library_grpmember). -sql_est_size( 0,library_humanhealth). -sql_est_size( 0,library_humanhealthprop). -sql_est_size( 0,organism_cvterm). -sql_est_size( 0,organism_cvtermprop). -sql_est_size( 0,organism_grpmember). -sql_est_size( 0,project). -sql_est_size( 0,stock_dbxref). -sql_est_size( 0,stock_pub). -sql_est_size( 0,stock_relationship). -sql_est_size( 0,stock_relationship_pub). -sql_est_size( 0,stockprop_pub). -sql_est_size( 0,tableinfo). - -est_size_loaded(N,F/A):- fb_pred_major(F,A),metta_stats(F,A,N). - -fb_pred_major(F,A):- fb_pred_m(F,A). -fb_pred_major(F,A):- fb_pred_nr(F,A), - \+ fb_pred_m(F,A), \+ (fb_pred(F,A2),A2>A). - -fb_pred_m(fbgn_exons2affy1_overlaps,2). -fb_pred_m(fbgn_exons2affy2_overlaps,2). - -print_loaded_from_files:- - findall(print_est_size(loaded_from_file,N,F), - is_loaded_from_file_count(F,N),L), - sort(L,S),reverse(S,R),maplist(call,R), - print_est_sizes. - -fb_info:- print_loaded_from_files,fb_stats. - -fb_show:- print_loaded_from_files,fb_stats. - -print_est_sizes:- - findall(print_est_size(est_size_loaded,N,F), - est_size_loaded(N,F),L), - sort(L,S),reverse(S,R),maplist(call,R). - -print_est_size(F,N1,S):- number(S), \+ number(N1),!,print_est_size(F,S,N1). -print_est_size(F,N1,S):- format('~N (~q ~@ ~q) ',[F,pad_number(N1,15),S]),!. - -% pad_number(Number, N) pads Number with spaces to occupy N spaces in total -% and includes underscores as the thousand separator. -pad_number(Number, N) :- - sformat(S,"~t~D~*|", [Number,N]),symbolic_list_concat(L,',',S), - symbolic_list_concat(L,'_',SS),write(SS). - - -% Process a file or directory path with a given predicate. -with_wild_path(Fnicate, Dir) :- extreme_debug(fbug(with_wild_path(Fnicate, Dir))),fail. -with_wild_path(_Fnicate, []) :- !. -with_wild_path(Fnicate, Dir) :- is_scryer, symbol(Dir), !, must_det_ll((path_chars(Dir,Chars), with_wild_path(Fnicate, Chars))). -with_wild_path(Fnicate, Chars) :- \+ is_scryer, \+ symbol(Chars), !, must_det_ll((name(Atom,Chars), with_wild_path(Fnicate, Atom))). -with_wild_path(Fnicate, File) :- exists_file(File), !, must_det_ll(( call(Fnicate, File))). -with_wild_path(Fnicate, File) :- !, with_wild_path_swi(Fnicate, File). -with_wild_path(Fnicate, Dir) :- exists_directory(Dir), !, - must_det_ll((directory_files(Dir, Files), - maplist(directory_file_path(Dir,Files),Paths), - maplist(path_chars,Paths,CharPaths), - maplist(with_wild_path(Fnicate), CharPaths))), !. -with_wild_path(Fnicate, File) :- is_list(File), !, must_det_ll((maplist(with_wild_path(Fnicate), File))). -with_wild_path(Fnicate, File) :- must_det_ll((call(Fnicate, File))). - -path_chars(A,C):- symbol_chars(A,C). - -with_wild_path_swi(Fnicate, File) :- - compound(File), - absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(directory)]), - '\\=@='(Dir, File), !, - with_wild_path(Fnicate, Dir). -with_wild_path_swi(Fnicate, File) :- - compound(File), !, - absolute_file_name(File, Dir, [access(read), file_errors(fail), file_type(['csv', 'tsv', ''])]), - '\\=@='(Dir, File), !, - with_wild_path(Fnicate, Dir). -with_wild_path_swi(Fnicate, File) :- - symbol_contains(File, '*'), - expand_file_name(File, List), !, - maplist(with_wild_path(Fnicate), List). -with_wild_path_swi(Fnicate, File) :- - exists_directory(File), - directory_file_path(File, '*.*sv', Wildcard), - expand_file_name(Wildcard, List), !, - maplist(Fnicate, List). - - -:- dynamic(fix_columns_nth/2). -needs_fixed(X,Y):- (var(X)->fb_arg(X);true),fix_concept(X,L),(L\=@=[X],L\=@=X),(L=[Y]->true;Y=L). -mine_args_that_need_reduced:- - writeln('\n\n\n=====\n\n\n'), - forall(needs_fixed(X,Y),(pp_as(needs_fixed(X->Y)),fix_columns_with_arg(X))), - listing(fix_columns_nth). - -fix_columns_with_arg(Arg):- - forall(fb_arg_table_n(Arg,Fn,N), - fix_columns_n(Fn,N)). -fix_columns_n(Fn,N):- - assert_new(fix_columns_nth(Fn,N)). - - -load_fb_mask(Filename):- is_scryer,symbol(Filename),name(Filename,Chars),!,load_fb_mask(Chars). -load_fb_mask(Filename):- expand_file_name(Filename,Files1),maplist(load_fb_cache,Files1). -load_fb_cache(File):- with_wild_path(load_fb_cache0,File). -load_fb_cache0(RFile):- - absolute_file_name(RFile,File), - file_name_extension(Name,_E,File), - symbolic_list_concat([Pub,Table],'.',Name), - symbolic_list_concat([Pub,Table,qlf],'.',OutputFile),!, - load_fb_cache(File,OutputFile,Table). -load_fb_cache0(File):- file_name_extension(Name,_E,File), - symbolic_list_concat([Table],'.',Name), - symbolic_list_concat([Table,qlf],'.',OutputFile), - load_fb_cache(File,OutputFile,Table). - -% ============================================================================ -% LOAD FB Files -% ============================================================================ -track_load_into_file(RelFilename,Goal):- - must_det_ll(absolute_file_name(RelFilename,Filename)), - must_det_ll(track_load_into_file0(Filename,Goal)),!. - -track_load_into_file0(Filename,Goal):- nb_current(tracking_file,FilenameW), Filename==FilenameW, !,call(Goal). -track_load_into_file0(Filename,Goal):- - must_det_ll(( - nb_setval(tracking_file,Filename), - start_html_of(Filename), - fbug(track_load_into_file(Filename)), - flag(loaded_from_file_count,Was,0))), - must_det_ll(with_option(loading_file, Filename, time(must_det_ll(Goal)))), - must_det_ll(( - flag(loaded_from_file_count,New,Was), - ((New>0 ; \+ is_loaded_from_file_count(Filename,_))->assert(is_loaded_from_file_count(Filename,New));true), - fbug(Filename=New), - rename_tmp_files(Filename), - save_html_of(Filename))),!. - -rename_tmp_files(_Filename):- \+ is_converting,!. -rename_tmp_files(Filename):- rename_tmp_files(Filename,'.metta'),rename_tmp_files(Filename,'.metta.datalog'). - -rename_tmp_files(Filename,NonTmp):- atomic_list_concat([Filename,NonTmp,'.tmp'],From), - atomic_list_concat([Filename,NonTmp],To), - fbug(rename_file(From,To)), - ignore((exists_file(From),rename_file(From,To))). - -:- dynamic(is_loaded_from_file_count/2). - -:- use_module(library(http/json)). -:- ensure_loaded(flybase_json). -load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), - current_predicate(load_flybase_json/2), - absolute_file_name(File,Filename), - track_load_into_file(Filename,load_flybase_json(Fn,File)). - -load_fb_json(Fn,File):- fbug(load_fb_json(Fn,File)), - setup_call_cleanup(open(File,read,In,[encoding(utf8)]), json:json_read(In,Term,[]), close(In)), - time(assert(saved_fb_json(File,Term,Fn))). - - -% ============================== -% GFF/GTF/GFF3 Reader -% ============================== - -load_fb_gff(Fn,Filename):- - track_load_into_file(Filename, - must_det_ll(( - fbug(load_fb_gff(Fn,Filename)), - directory_file_path(Directory, BaseName, Filename), - file_name_extension(Id, _, BaseName), - Type = 'SequenceFile', - assert_OBO(id_type(Id,Type)), - assert_OBO(pathname(Id,Filename)),!, - assert_OBO(basename(Id,BaseName)),!, - assert_OBO(directory(Id,Directory)),!, - setup_call_cleanup(open(Filename,read,In), (repeat,load_fb_gff_read(Id,In)), close(In))))). - % Main predicate to parse a GFF line and store it as facts -load_fb_gff_read(_Fn,In):- (at_end_of_stream(In);reached_file_max),!. -load_fb_gff_read(Fn,In):- read_line_to_string(In,Line), load_fb_gff_line(Fn,Line),!,fail. - -load_fb_gff_line(Fn,Line) :- % Predicate to process a line starting with ##sequence-region - split_string(Line, " \t", " \t", ['##sequence-region', SeqID, StartStr, EndStr]), - atom_number(StartStr, Start), atom_number(EndStr, End),!, - assert_MeTTa(genomic_sequence_region(Fn,SeqID,Start,End)). -load_fb_gff_line(_Fn,Line) :- split_string(Line, " \t", " \t", ['##gff-version'|_]),!. -load_fb_gff_line(_Fn,Line) :- string_concat('#', _, Line),!. -load_fb_gff_line(Fn,Line) :- - split_string(Line, "\t", "", [SeqID, Source, Type, StartStr, EndStr, ScoreStr, Strand, Phase | MoreProps]), - atom_number(StartStr, Start), - atom_number(EndStr, End), - store_gff_fact(Fn,SeqID, "source", Source), - store_gff_fact(Fn,SeqID, "type", Type), - store_gff_fact(Fn,SeqID, "start", Start), - store_gff_fact(Fn,SeqID, "end", End), - store_gff_fact(Fn,SeqID, "score", ScoreStr), - store_gff_fact(Fn,SeqID, "strand", Strand), - store_gff_fact(Fn,SeqID, "phase", Phase), - parse_and_store_attributes(SeqID, MoreProps). -load_fb_gff_line(Fn,Line):- fbug(load_fb_gff_line(Fn,Line)). -% Predicate to store each field as a fact -store_gff_fact(Fn,SeqID, Key, Value) :- - Value \= ".", - assert_MeTTa(genomic_sequence_feature(Fn, SeqID, Key, Value)). -% Predicate to handle the attributes field -parse_and_store_attributes(Fn, SeqID, [AttributesStr | _]) :- - split_string(AttributesStr, ";", "", AttrList), - maplist(parse_and_store_attribute(Fn, SeqID), AttrList). -% Parse individual attribute and store it -parse_and_store_attribute(Fn, SeqID, AttrStr) :- - (split_string(AttrStr, "=", "\"", [Key, Value])->true;split_string(AttrStr, " ", "\"", [Key | Value])), - store_gff_fact(Fn,SeqID, Key, Value). -/* - -find . \( -name "*.fa" -o -name "*.gff" -o -name "*.json" \) -execdir bash -c 'for file; do metta_pattern="${file%.*}"*metta*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Metta file does not exist for $full_path"; fi; done' bash {} \; | sort -r - -find . ! -name "*.metta" - -execdir bash -c 'for file; do metta_pattern="${file%.*}"*metta*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Metta file does not exist for $full_path"; fi; done' bash {} \; | sort -r - -find . \( -name "*.fa" -o -name "*.gff" -o -name "*.json" \) -execdir bash -c 'for file; do metta_pattern="${file%.*}"*datalog*; full_path="$(pwd)/$file"; if compgen -G "$metta_pattern" > /dev/null; then true; else echo "Datalog file does not exist for $full_path"; fi; done' bash {} \; | sort -r - -*/ - -% ============================== -% FA/FASTA Reader -% ============================== - -load_fb_fa(Fn,Filename):- - track_load_into_file(Filename, - must_det_ll(( - fbug(load_fb_fa(Fn,Filename)), - directory_file_path(Directory, BaseName, Filename), - file_name_extension(Id, _, BaseName), - Type = 'SequenceFile', - assert_OBO(id_type(Id,Type)), - assert_OBO(pathname(Id,Filename)),!, - assert_OBO(basename(Id,BaseName)),!, - assert_OBO(directory(Id,Directory)),!, - setup_call_cleanup(open(Filename,read,In), load_fb_fa_read(Id,In,_,0), close(In))))). -load_fb_fa_read(_Fn,In, _, _):- (at_end_of_stream(In);reached_file_max),!. -load_fb_fa_read(Fn,In,FBTe,At):- read_line_to_string(In,Str), load_fb_fa_read_str(Fn,In,FBTe,Str,At). - -load_fb_fa_read_str(Fn,In,_,Str,_):- string_concat('>',Line,Str),!, - split_string(Line, " \t", " \t", [FBTe|Props]),!, - parse_and_store_attributes(FBTe, Props), - load_fb_fa_read(Fn,In,FBTe,0). - -load_fb_fa_read_str(Fn,In,FBTe,Str,From):- - atom_chars(Str,Chars), - Data =..[fasta_sequence,Fn,FBTe,From,Chars], - assert_MeTTa(Data),!, - length(Chars,Plus), - At is From+Plus, - load_fb_fa_read(Fn,In,FBTe,At). - -maybe_sample(_Fn,_Args):- \+ should_sample,!. -maybe_sample( Fn, Args):- assert_arg_samples(Fn,1,Args). - -:- dynamic(fb_arg/1). -:- dynamic(fb_arg_table_n/3). -assert_arg_table_n(A,Fn,N):- assert_new(fb_arg(A)), assert_new(fb_arg_table_n(A,Fn,N)). - -assert_arg_samples(Fn,N,[A|Args]):- - (dont_sample(A)->true;assert_arg_table_n(A,Fn,N)), - N2 is N+1, assert_arg_samples(Fn,N2,Args). -assert_arg_samples(_,_,_). - -dont_sample(N):- \+ symbol(N). dont_sample(''). dont_sample('-'). - -data_pred0(X,Y):- symbolic_list_concat(List,'/',X),List\==[],List\=[_],!,last(List,L),data_pred0(L,Y). -data_pred0(X,Y):- symbol_concat(YY,'.tsv',X),!,data_pred0(YY,Y). -data_pred0(X,Y):- symbol_concat(YY,'.fb',X),!,data_pred0(YY,Y). -data_pred0(X,Y):- symbol_concat(YY,'_',X),!,data_pred0(YY,Y). -data_pred0(X,Y):- symbol_concat(YY,'_fb',X),!,data_pred0(YY,Y). -data_pred0(X,Y):- symbol_concat('public.',YY,X),!,data_pred0(YY,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'.',X),L=[_,_|_],symbolic_list_concat(L,'_',XL),!,data_pred0(XL,Y). -%data_pred0(X,Y):- symbolic_list_concat([L,_|_],'_fb_2',X),!,data_pred0(L,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_0',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_1',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_2',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_3',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_4',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_5',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_6',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_7',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_8',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb_9',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -data_pred0(X,Y):- symbolic_list_concat(L,'_fb__',X),L=[_,_|_],symbolic_list_concat(L,'_fb_',XL),!,data_pred0(XL,Y). -%data_pred0(X,Y):- symbolic_list_concat(List,'_',X),once(not_trimmed_path(List,NewList)), -% NewList\==[],NewList\==List,symbolic_list_concat(NewList,'_',Y),!. -data_pred0(X,X). - -data_pred(X,Y):- data_pred0(X,Y), Y\=='',!. -data_pred(X,X). - - -%file_to_sep(_File,9). -file_to_sep(csv,','). -file_to_sep(tsv,'\t'). -file_to_sep(metta_x,'\t'). -file_to_sep(File,Sep):- file_name_extension(_,Ext,File),clause(file_to_sep(Ext,Sep),true),!. -file_to_sep(_,'\t'). - -is_swipl:- \+ is_scryer. - -:- if(is_scryer). -read_line_to_chars(S,L):- is_scryer,!,get_line_to_chars(S,L,[]). -:- endif. -read_line_to_chars(S,L):- read_line_to_string(S,Str),string_chars(Str,L). - - -% Assert a given term if no variant of it already exists in the database. -% Usage: fb_assert(+Term). -fb_assert(Term) :- - % Check if Term is a rule (Head :- Body) or a fact (just Head). - ( Term = (Head :- Body) - -> copy_term(Body, CopiedBody) - ; (Head = Term, CopiedBody = true) - ), - % Copy the Head to generate a new term with fresh variables. - copy_term(Head, CopiedHead), - % If no variant of CopiedHead exists in the database with the same body, - % assert Term; otherwise, succeed without asserting Term. - ( \+ (clause(CopiedHead, CopiedBody), variant(CopiedHead, Head)) - -> assertz(Term) - ; true - ). - -:- dynamic(done_reading/1). - -use_metta_x:- fail. - -load_fb_cache(_File,OutputFile,_Fn):- exists_file(OutputFile),!,ensure_loaded(OutputFile),!. -load_fb_cache(File,_OutputFile,_Fn):- load_files([File],[qcompile(large)]). - - -'load_flybase_tiny':- load_flybase(20_000). -'load_flybase_full':- load_flybase(1_000_000_000_000_000_000_000_000_000_000_000_000_000_000_000). -'save_flybase_full':- load_flybase_full,qsave_program. - -load_flybase(N):- (number(N)->true;N==inf),!, - with_option([max_per_file=N], - (option_value(max_per_file,Max),write(max_per_file=Max),load_flybase)). -load_flybase(File):- file_name_extension(_,Ext,File),!, load_flybase(File,Ext). - -:- export(load_flybase/1). -:- system:import(load_flybase/1). - -load_flybase(File,Ext):- - with_wild_path(load_flybase0(Ext),File),!. - - -exists_with_ext(File,Ext):- atom_concat(File,Ext,Res),exists_file(Res),!. - -load_flybase0(Ext,File):- Ext=='',file_name_extension(_,Ext2,File),Ext2\=='',!,load_flybase0(Ext2,File). -load_flybase0(Ext,_File):- Ext=='pl',!. -load_flybase0(Ext,_File):- Ext=='metta', is_converting,!. -load_flybase0(Ext,_File):- Ext=='datalog', is_converting,!. -load_flybase0(_Ext, File):- is_converting,exists_with_ext(File,'.metta'),(exists_with_ext(File,'.datalog');exists_with_ext(File,'.metta.datalog')),!. -load_flybase0(Ext,File):- - must_det_ll((file_name_extension(Name,_,File), - data_pred(Name,Fn),load_flybase(Ext,File,Fn))). - -:- dynamic(load_state/2). -%load_flybase(_Ext,_File,OutputFile,_Fn):- exists_file(OutputFile),size_file(OutputFile,N),N>100,!. -load_flybase(_Ext,File,_Fn):- load_state(File,_),!. -load_flybase(Ext,File,Fn):- - must_det_ll(( - assert(load_state(File,loading)), - fbug(load_flybase(Ext,File,Fn)), - load_flybase_ext(Ext,File,Fn), - ignore(retract(load_state(File,loading))), - assert(load_state(File,loaded)),fb_stats)). - -load_flybase_ext(_Ext,File,_Fn):- use_metta_x, atom_concat(File,'.metta_x',MFile), - exists_file(MFile), \+ is_converting, % Ext \== 'obo', - \+ option_value(metta_x_files,false),!, - process_metta_x_file(MFile). -load_flybase_ext(_Ext,File,_Fn):- fail, atom_concat(File,'.metta',MFile), - exists_file(MFile), \+ is_converting, % Ext \== 'obo', - \+ option_value(mettafiles,false),!, - load_flybase_metta(MFile). -load_flybase_ext(Ext,File,_Fn):- Ext==obo,current_predicate(load_obo/1),!,load_obo(File). -load_flybase_ext(Ext,File,_Fn):- Ext==scm,include_atomspace_1_0(File). -load_flybase_ext(Ext,File, Fn):- Ext==json,!,load_fb_json(Fn,File),!. -load_flybase_ext(Ext,File, Fn):- Ext==gff,!,load_fb_gff(Fn,File),!. -load_flybase_ext(Ext,File, Fn):- Ext==gff3,!,load_fb_gff(Fn,File),!. -load_flybase_ext(Ext,File, Fn):- Ext==fa,!,load_fb_fa(Fn,File),!. -load_flybase_ext(Ext,File, Fn):- Ext==fasta,!,load_fb_fa(Fn,File),!. -load_flybase_ext(Ext,File,_Fn):- Ext==metta,current_predicate(load_metta/2),!,load_flybase_metta(File). -load_flybase_ext(Ext,File, Fn):- file_to_sep(Ext,Sep),!, - track_load_into_file(File, - setup_call_cleanup(open(File,read,Stream), - must_det_ll(load_flybase_sv(Sep,File,Stream,Fn)), - close(Stream))),!. -load_flybase_ext(Ext,File, Fn):- fbug(missed_loading_flybase(Ext,File,Fn)),!. - -%load_flybase_metta(File):- !, load_metta('&flybase',File). -load_flybase_metta(File):- - with_option('trace-on-load',false, - with_option('current_self','&flybase', - include_atomspace_1_0(File))). -/* - (EvaluationLink - (PredicateNode "has_name") - (ListLink - (DiseaseOntologyNode "DOID:0001816") - (ConceptNode "angiosarcoma"))) - - - load_metta('&flybase',File)). -*/ -include_atomspace_1_0(RelFilename):- - absolute_file_name(RelFilename,Filename), - track_load_into_file(Filename, - must_det_ll(( - atom(RelFilename), - current_self(Self), - exists_file(RelFilename),!, - must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), - ((directory_file_path(Directory, _, Filename), - assert(metta_file(Self,Filename,Directory)), - with_cwd(Directory, - must_det_ll( load_atomspace_1_0_file_stream(Filename,Self,In))))),close(In))))))). - -load_atomspace_1_0_file_stream(Filename,Self,In):- - once((is_file_stream_and_size(In, Size) , Size>102400) -> P2 = read_sform2 ; P2 = read_metta),!, - with_option(loading_file,Filename, - %current_exec_file(Filename), - ((must_det_ll(( - set_exec_num(Filename,1), - %load_answer_file(Filename), - set_exec_num(Filename,0))), - once((repeat, (( - current_read_mode(Mode), - once(call(P2, In,Expr)), %write_src(read_atomspace_1_0=Expr),nl, - must_det_ll((((do_atomspace_1_0(file(Filename),Mode,Self,Expr,_O)))->true; - pp_m(unknown_do_atomspace_1_0(file(Filename),Mode,Self,Expr)))), - flush_output)), - at_end_of_stream(In)))))),!. - -% ['InheritanceLink',['DiseaseOntologyNode','DOID:0112326'],['DiseaseOntologyNode','DOID:0050737']] -do_atomspace_1_0(_W,_M,_S,end_of_file,_O):-!. -do_atomspace_1_0(W,M,S,E,_O):- - rewrite_as10_to_as20(E,E2,Extras),!, - maplist(do_atomspace_2_0(W,M,S),[E2|Extras]). - -do_atomspace_2_0(_W,_M,_S,E):- - assert_OBO(E), - !. % writeq(E),!,nl. - -rewrite_as10_to_as20(A,A,[]):- \+ is_list(A). -rewrite_as10_to_as20([CN,Arg],Arg,[]):- CN='ConceptNode',!. -rewrite_as10_to_as20([ConceptNode,Arg1],Arg,[is_a(Arg,ConceptNode)|R]):- atom(ConceptNode),atom_concat(_Concept,'Node',ConceptNode),!, - rewrite_as10_to_as20(Arg1,Arg,R),!. -rewrite_as10_to_as20(['EvaluationLink',['PredicateNode',Pred],['ListLink'|Args]], Res, - [arity(Pred,Len),is_a(Pred,'Predicate')|ExtrasF]):- - length(Args,Len),maplist(rewrite_as10_to_as20,Args,ArgsL,Extras), flatten(Extras,ExtrasF), - Res =.. [Pred|ArgsL]. - - -rewrite_as10_to_as20([InheritanceLink|Args],[Inheritance|ArgsL],ExtrasF):- - atom(InheritanceLink),atom_concat(Inheritance,'Link',InheritanceLink), - maplist(rewrite_as10_to_as20,Args,ArgsL,Extras), flatten(Extras,ExtrasF),!. - -rewrite_as10_to_as20(A,A,[]). - -fix_list_args(_,_,Y,Y):- option_value(early_canon,[]), \+ should_sample,!. -%fix_list_args(_Fn,_ArgTypes,[X],[X]):- !. -fix_list_args(Fn,ArgTypes,Args,NewArgs):- - must_det_ll(( - primary_term(Fn,ArgTypes,Args,Term,NewArgTypes), - fix_elist_args(Term,Fn,1,NewArgTypes,Args,NewArgs), - extreme_debug(ignore(((Args \== NewArgs,fbug(NewArgs))))))). -fix_list_args(_Fn,_ArgTypes,Args,Args):-!. - -primary_term(_Fn,[N|ArgTypes],_Args,_Term,ArgTypes):- number(N),!. -primary_term(_Fn,[N|ArgTypes],Args,Term,ArgTypes):- number(N),!,nth1(N,Args,Term). -primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes):-!. -primary_term(_Fn,ArgTypes,Args,Term,NewArgTypes):- - append(L,[primary(Name)|R],ArgTypes), - append(L,[Name|R],NewArgTypes), - length(L,N),nth0(N,Args,Term). -primary_term( Fn,ArgTypes,Args,Term,ArgTypes):- - primary_column(Fn,Name), - nth1(N,ArgTypes,Name),!, - nth1(N,Args,Term),!. -primary_term(_Fn,ArgTypes,[Term|_],Term,ArgTypes):-!. -primary_term(_Fn,ArgTypes,_Args,_Term,ArgTypes). - -fix_elist_args(Term,Fn,N,[Nth|ArgTypes],Args,NewArgs):- number(Nth),!,fix_elist_args(Term,Fn,N,ArgTypes,Args,NewArgs). -fix_elist_args(Term,Fn,N,[Type|ArgTypes],[Concept|Args],[Arg|NewArgs]):- !, - must_det_ll((adjust_type(Term,Fn,N,Type,Concept,Arg), N2 is N +1, fix_elist_args(Term,Fn,N2,ArgTypes,Args,NewArgs))). -fix_elist_args(_Term,_Fn,_N,_,X,X). - -adjust_type(Term,Fn,N,listOf(Type),Arg,NewL):- must_det_ll((nonvar(Type),as_list([],Arg,New),is_list(New), - maplist(adjust_type(Term,Fn,N,Type),New,NewL))). -adjust_type(Term,Fn,N,listOf(Type,Seps),Arg,NewL):- must_det_ll((nonvar(Type),as_list(Seps,Arg,New),is_list(New), - maplist(adjust_type(Term,Fn,N,Type),New,NewL))). -adjust_type(Term,Fn,N,Type,Concept,Arg):- numeric_value_p_n(Fn,N,_),!, - must_det_ll(((into_number(Concept,Arg)->true;(Concept=Arg)),assert_type_of(Term,Fn,N,Type,Arg))). -adjust_type(Term,Fn,N,Type,Concept,Arg):- must_det_ll((fix_concept(Concept,Arg), assert_type_of(Term,Fn,N,Type,Arg))). -adjust_type(_Term,_Fn,_N,_,X,X). - -into_number(Concept,Arg):- number(Concept),!,Arg = Concept. -into_number(Concept,Arg):- symbol_number(Concept,Arg),!. -into_number(Concept,Arg):- Concept=Arg,!. - -:- dynamic(fb_arg/1). -:- dynamic(fb_arg_table_n/3). -assert_type_of(_Term,_Fn,_N,_Type,_Arg):- \+ should_sample,!. -assert_type_of(Term,Fn,N,Type,Arg):- is_list(Arg),!,maplist(assert_type_of(Term,Fn,N,Type),Arg). -assert_type_of(_Term,Fn,N,_Type,Arg):- - must_det_ll(( - assert_new(fb_arg(Arg)), - assert_new(fb_arg_table_n(Arg,Fn,N)))). - -:- dynamic(fb_arg_type/1). -:- dynamic(table_n_type/3). -add_table_n_types(_Fn,_,ArgTypes):- \+ is_list(ArgTypes),!. -add_table_n_types(Fn,1,[N|ArgTypes]):- number(N),!, - add_table_n_types(Fn,1,ArgTypes). -add_table_n_types(Fn,N,[Type|ArgTypes]):-!, - sub_term(Sub,Type),symbol(Sub),!, - assert_new(fb_arg_type(Sub)), - assert_new(table_n_type(Fn,N,Sub)), - N2 is N+1, add_table_n_types(Fn,N2,ArgTypes),!. -add_table_n_types(_Fn,_,[]). - -is_concept(Arg):- fb_arg(Arg). -is_concept_type(Type):- fb_arg_type(Type). - -arg_table_n_type(Arg,Fn,N,Type):- table_n_type(Fn,N,Type),once((fb_pred(Fn,A),functor(G,Fn,A), arg(N,G,Arg),call(G), - \+ is_list(Arg), \+ as_list(Arg,[]))). - -is_valuesymbol(Fn,N,Type):- arg_table_n_type(Arg,Fn,N,Type),symbol_number(Arg,_). - -:- dynamic(numeric_value_p_n/3). -fis_valuesymbol(PNList,Len):- findall(P-N,is_valuesymbol(P,N,_Type),PNList),length(PNList,Len). - -save_value_symbol_cols:- for_all(is_valuesymbol(Fn,N,Type),assert_new(numeric_value_p_n(Fn,N,Type))), - listing(numeric_value_p_n/3). - - -/* -load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn):- - flag(loaded_from_file_count,_,0), - ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), - fix_header_names(Fn,Header,ArgTypes), - for_all((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), - for_all((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), - if_t(is_list(ArgTypes),set_option_value(fb_argtypes,ArgTypes)), - time((repeat, - read_line_to_chars(Stream, Chars), - once(load_flybase_chars(Sep,File,Stream,Chars,OutputStream,Fn)), - once(done_reading(File);reached_file_max;at_end_of_stream(Stream)),!, - once(end_fb_file_data(File,Stream,Fn,OutputStream)), - loaded_from_file_count(X),!, - fb_stats(Fn), - pl_stats(File,X))). - -write_flybase_data(_OutputStream,_Fn,[]):-!. -write_flybase_data(_OutputStream,_Fn,['']):-!. -write_flybase_data(_OutputStream,Fn,DataL):- assert_MeTTa(Fn,DataL). - -FBgn: FlyBase gene number - Represents a gene. -FBal: FlyBase allele number - Represents an allele. -FBst: FlyBase stock number - Represents a stock. -FBtp: FlyBase transposon number - Represents a transposon. -FBab: FlyBase aberration number - Represents a chromosomal aberration. -FBba: FlyBase balancer number - Represents a balancer. -FBcl: FlyBase clone number - Represents a DNA or RNA clone. -FBim: FlyBase image number - Represents an image. -FBpp: FlyBase polypeptide number - Represents a protein. -FBtr: FlyBase transcript number - Represents a transcript. -FBte: FlyBase transgenic element number - Represents a transgenic element. -*/ - -write_flybase_data(_ArgTypes,_Fn,[]):-!. -write_flybase_data(_ArgTypes,_Fn,['']):-!. -write_flybase_data(_ArgTypes,_Fn,[_]):-!. -write_flybase_data(_ArgTypes,Fn,DataL0):- - maplist(fast_column,DataL0,DataL), !, Data=..[Fn|DataL], assert_MeTTa(Data). -%write_flybase_data(_ArgTypes,Fn,DataL):- into_datum(Fn,DataL,Data), assert_OBO(Data). - - -/* - -assert_MeTTa(Data):- Data=..[Fn|DataL],assert_MeTTa(Fn,DataL),!. - -assert_MeTTa(Fn,DataL0):- - make_assertion(Fn,DataL0,Data,OldData), - ignore(( - heartbeat, - functor(Data,F,A), A>=2, - decl_fb_pred(F,A), - flag(loaded_from_file_count,X,X+1), - flag(total_loaded_symbols,TA,TA+1), - assert(Data), - ignore((((has_list(_ArgTypes)->(X<23,X>20); (X<13,X>10)); (X>0,(0 is X rem 1_000_000),fb_stats)),nl,nl,fbug(X=Data),ignore((OldData\==DataL0,fbug(oldData=OldData))))), - ignore((fail,catch_ignore(ignore((X<1000,must_det_ll((write_canonical(OutputStream,Data),writeln(OutputStream,'.')))))))))),!. - */ - -make_assertion(Fn, Cols, NewData, OldData):- !, make_assertion4(Fn, Cols, NewData, OldData). - -make_assertion(Fn,DataL0,Data,DataL0):- - must_det_ll(( - into_datum(Fn,DataL0,Data0), - Data0=..[F|Args], - Args=DataL, - Data=..[F|DataL])). - -make_assertion(ArgTypes,Fn,DataL0,Data,DataL0):- - must_det_ll(( - into_datum(Fn,DataL0,Data0), - Data0=..[F|Args], - skip(if_t(var(ArgTypes),must_det_ll((once((length(Args,Len),length(ArgTypes,Len),once((table_columns(Fn,ArgTypes);table_columns(F,ArgTypes))))))))), - fix_list_args(Fn,ArgTypes,Args,DataL), - Data=..[F|DataL])). - - -% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 -%reprefix(['GO_','GO--','FBgn','BiologicalProcess:GO:'],'GO:'). -reprefix(['GO_','GO--','BiologicalProcess:GO:'],'GO:'). -reprefix(['flybase:','FLYBASE:','comment:'],''). -reprefix(['FBpp:'],'FBpp'). -reprefix(['FBgn:'],'FBgn'). -reprefix(['FB:FB'],'FB'). -%./KBs/SUMO-OBO/gene-merged-SUMO.kif -%# -%FBbt_00051628= - -as_list(A,New):- is_list(A),!,A=New. -as_list(N,[N]):- \+ symbol(N), \+ string(N),!. -%as_list(A,New):- var(A),!,New = [A]. -as_list('-',[]). as_list("-",[]). as_list('',[]). -as_list("",[]). as_list(' ',[]). as_list(" ",[]). -%as_list(N,[N]):- !. -as_list(_,S,O):- as_list(S,O),!. -as_list(SepL,A,List):- member(Sep,SepL),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!. -%as_list(_,A,ListO):- member(Sep,['|',',',';']),catch_ignore(symbolic_list_concat(List,Sep,A)),List\=[_],!,maplist(fix_concept,List,ListO). -as_list(_Sep,A,[A]). -has_list(Header):- is_list(Header),member(listOf(_),Header). - -% FBcv_0000743 % "FBtp0000743 %CL:0000743 % WBPhenotype_0000743 - -% ======================================= -% Fix Concept1 -% ======================================= - -fix_concept1(A,L):- as_list(['|'],A,L),(L\=@=[A],A\=@=L). -fix_concept1(A,N):- symbol_number(A,N),!. -%fix_concept1(A,AO):- reprefix(List,To),member(E,List),symbol_concat(E,AM,A),symbol_concat(To,AM,AO). -%fix_concept1(A,AO):- symbol_concat('FB',_,A),symbolic_list_concat([Type,Number],':',A),!,symbol_concat(Type,Number,AO). -fix_concept1(A,AO):- symbol_concat('"',Mid,A),symbol_concat(AS,'"',Mid),symbol_string(AS,AO). -fix_concept1(A,AO):- symbol_concat(AO,'(gene name)',A),AO\==''. - -fix_concept1(A,N):- symbol(A),!,N=A. -%fix_concept(S,A):- number_string(A,S),!. - - -% ======================================= -% Fix Concept -% ======================================= - -fix_concept(A,New):- is_list(A),!,maplist(fix_concept,A,L),!,New=L. -fix_concept(A,New):- \+ symbol(A), !,New=A. -fix_concept(S,O):- once(fix_concept1(S,M)),S\=@=M,!,fix_concept(M,O). -fix_concept(A,New):- =(A,New),!. - - -fix_columns_nth('genome-cyto-seq', 1). -fix_columns_nth('genome-cyto-seq', 2). -fix_columns_nth('genome-cyto-seq', 3). -fix_columns_nth(allele_genetic_interactions, 3). -fix_columns_nth(dmel_human_orthologs_disease, 6). -fix_columns_nth(dmel_human_orthologs_disease, 7). -fix_columns_nth(dmel_paralogs, 10). -fix_columns_nth(dmel_paralogs, 11). -fix_columns_nth(dmel_paralogs, 5). -fix_columns_nth(dmel_paralogs, 8). -fix_columns_nth(entity_publication, 4). -fix_columns_nth(fbgn_NAseq_Uniprot, 7). -fix_columns_nth(fbrf_pmid_pmcid_doi, 2). -fix_columns_nth(gene_genetic_interactions, 1). -fix_columns_nth(gene_genetic_interactions, 2). -fix_columns_nth(gene_genetic_interactions, 3). -fix_columns_nth(gene_genetic_interactions, 4). -fix_columns_nth(gene_groups_HGNC, 4). -fix_columns_nth(gene_rpkm_matrix, _). -fix_columns_nth(gene_rpkm_report, 10). -fix_columns_nth(gene_rpkm_report, 11). -fix_columns_nth(gene_rpkm_report, 8). -fix_columns_nth(gene_rpkm_report, 9). -fix_columns_nth(gene_snapshots, 4). -fix_columns_nth(genotype_phenotype, 5). -fix_columns_nth(genotype_phenotype, 6). -fix_columns_nth(gp_information, 9). -fix_columns_nth(insertion_mapping, 5). -fix_columns_nth(insertion_mapping, 6). -fix_columns_nth(physical_interactions_mitab, _). -fix_columns_nth(pmid_fbgn_uniprot, 2). -fix_columns_nth(stocks, 7). -fix_columns_nth(synonym, 5). -fix_columns_nth(synonym, 6). -fix_columns_nth(transposon_sequence_set, 4). -fix_columns_nth(transposon_sequence_set, 5). -fix_columns_nth(transposon_sequence_set, 8). - - - -:- discontiguous column_description/4. -:- discontiguous primary_column/2. -:- discontiguous column_names/2. -:- discontiguous file_location/2. - - - -% 466_896_429 -% Descriptions for allele_genetic_interactions columns -% Descriptions for genotype_phenotype_data columns -% For the file allele_genetic_interactions_*.tsv -% For the file genotype_phenotype_data_*.tsv - - - -load_flybase(Sep,File,Stream,Fn):- - must_det_ll(( - %ignore(swi_only(format(":- ~q.\n",[encoding(utf8)]))), - symbolic_list_concat([data,Fn],'_',Fn0), - data_pred(Fn0,Fn), - load_flybase_sv(Sep,File,Stream,Fn))). - -% Sep,File,Stream,OutputStream,Fn -load_flybase_sv(Sep,File,Stream,Fn):- at_end_of_stream(Stream),!, - once(load_fb_data(_ArgTypes,File,Stream,Fn,Sep,end_of_file)). - -load_flybase_sv(Sep,File,Stream,Fn):- - must_det_ll(( - flag(loaded_from_file_count,_,0), - ignore(once((table_columns(File,Header);table_columns(Fn,Header)))), - fix_header_names(Fn,Header,ArgTypes), - forall((table_columns(File,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(File,ColInfo))), - forall((table_columns(Fn,ColInfo),ArgTypes\==ColInfo),pp_fb(odd_table_columns(Fn,ColInfo))), - ((primary_column(Fn,Name),nth1(N,ArgTypes,Name))->NArgTypes=[N|ArgTypes];NArgTypes=[1|ArgTypes]), - if_t(is_list(ArgTypes),add_table_n_types(Fn,1,ArgTypes)), - ground(NArgTypes), - if_t(is_list(ArgTypes),ignore((length(ArgTypes,A),decl_fb_pred(Fn,A)))), - time((repeat, - read_line_to_chars(Stream, Chars), - once(load_flybase_chars(NArgTypes,File,Stream,Fn,Sep,Chars)), - once(reached_file_max;done_reading(File);at_end_of_stream(Stream)),!, - once(load_fb_data(NArgTypes,File,Stream,Fn,Sep,end_of_file)))), - loaded_from_file_count(X),!, - metta_stats(Fn), - pl_stats(File,X))),!. - - -%save_conversion_data(ArgTypes,Fn,OutputStream,Data):- maplist(write_flybase_data(ArgTypes,ArgTypes,Fn,OutputStream),Data). - -is_really_header_row([H|_],_Names):- symbol_concat('',_,H),!. - -process_metta_x_file(MXFile):- - data_pred(MXFile,Fn), - setup_call_cleanup(open(MXFile,read,In,[encoding(utf8)]), - ((repeat, - read_line_to_string(In,Chars), - (In == end_of_file -> ! ; - once((atomic_list_concat(Row0,'\t', Chars), - maplist(fast_column,Row0,Row), - assert_MeTTa([Fn|Row])))))), - close(In)). - -fast_column(X,X):- !. -fast_column(X,Y):- into_fb_term(X,Y),!. -fast_column(X,X). - -%read_csv_stream(Sep,CharsStream,Header):- read_string(CharsStream, "\n", "\r\t ",_,) -read_csv_stream(Sep,CharsStream,Header):- % \+ option_value(full_canon,[]),!, - read_line_to_string(CharsStream,Chars), - (Chars == end_of_file -> Header= Chars ; symbolic_list_concat(Header, Sep, Chars)). -read_csv_stream(Sep,CharsStream,Header):- \+ option_value(full_canon,[]),!, read_line_to_string(CharsStream,Chars), - (Chars == end_of_file -> Header= Chars ; split_string(Chars, Sep, "\s\t\n", Header)). -read_csv_stream(Sep,CharsStream,Header):- - name(Sep,[SepCode]), - csv_options(CompiledHeaderOptions,[separator(SepCode)]), - csv_read_row(CharsStream, HeaderRow, CompiledHeaderOptions), - HeaderRow=..[_|Header],!. - -read_csv(Sep,Chars,Header):- \+ option_value(full_canon,[]),!, split_string(Chars, Sep, "\s\t\n", Header). -read_csv(Sep,Chars,Header):- - open_string(Chars,CharsStream),read_csv_stream(Sep,CharsStream,Header). - - -attempt_header_row(Sep,Chars,Fn,Header,ArgTypes):- - read_csv(Sep,Chars,Header), - fix_header_names(Fn,Header,ArgTypes),!. - -:- dynamic(t_h_n/3). - -load_flybase_chars(ArgTypes,File,_Stream,_Fn,Sep,Chars):- - ( \+ member(Sep,Chars); (['#','#',' '|_]=Chars) ; (ground(ArgTypes),['#'|_]=Chars)), - %writeln(comment(Sep)=Chars),!, - (format("~n ; ~s",[Chars])), - ignore((loaded_from_file_count(X),X>2000,!,assert(done_reading(File)))). - -load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- - var(ArgTypes),member(Sep,Chars),['#'|_]=Chars, - (format("~n ; Maybe Header: ~s",[Chars])), - attempt_header_row(Sep,Chars,Fn,Header,ArgTypes), - is_really_header_row(Header,ArgTypes), - (fbug(t_h_n(Fn,Header,ArgTypes)),fb_assert(t_h_n(Fn,Header,ArgTypes))),!, - load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). - -load_flybase_chars([N|ArgTypes],File,Stream,Fn,Sep,Chars):- is_swipl, - attempt_header_row(Sep,Chars,Fn,Header,_), - write_flybase_data([N|ArgTypes],Fn,Header),!, - load_fb_data([N|ArgTypes],File,Stream,Fn,Sep,is_swipl). - - -load_fb_data(_ArgTypes,File,_Stream,_Fn,_Sep,Data):- - (Data == end_of_file;done_reading(File)),!. - -load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- % \+ option_value(full_canon,[]), !, - (option_value(max_per_file,Max)->true;Max=inf), - fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), - add_table_n_types(Fn,1,ArgTypes),!,% trace, - repeat, - once(read_csv_stream(Sep,Stream,Data)), - loaded_from_file_count(X), - (((Data== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; - (once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. - -load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- !, - name(Sep,[SepCode]), - csv_options(CompiledOptions,[separator(SepCode)]), - (option_value(max_per_file,Max)->true;Max=inf), - fbug(load_fb_data(ArgTypes,File,Max,Fn,Sep)), - add_table_n_types(Fn,1,ArgTypes),!, - repeat, - once((csv_read_row(Stream, RData, CompiledOptions))), - loaded_from_file_count(X), - (((RData== end_of_file);reached_file_max;(X>Max)) -> assert(done_reading(File)) ; - (RData =..[_|Data], - once(write_flybase_data(ArgTypes,Fn,Data)),fail)),!. - -% recursion depth 16 million rows -load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl):- - name(Sep,[SepCode]), - csv_options(CompiledOptions,[strip(true),convert(true),separator(SepCode)]), - (option_value(max_per_file,Max)->true;Max=inf), - once((csv_read_row(Stream, RData, CompiledOptions))), - loaded_from_file_count(X), - (((RData== end_of_file);(X>Max)) -> assert(done_reading(File)) ; - (RData =..[_|Data], once(write_flybase_data(ArgTypes,Fn,Data)), - load_fb_data(ArgTypes,File,Stream,Fn,Sep, is_swipl))),!. - - - -column_description('allele_FBal#', "Current FlyBase identifier (FBal#) of allele.", identifier, 'Allele Identifier'). -column_description('allele_symbol', "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). -column_description('Bin_value', "The expression bin classification of this gene in this RNA-Seq experiment, based on RPKM value.", numeric, 'Expression Bin'). -column_description('Cluster_Cell_Type_ID', "The FlyBase FBbt ID for the cell type represented by the cell cluster.", identifier, 'Cell Type'). -column_description('Cluster_Cell_Type_Name', "The FlyBase name for the cell type represented by the cell cluster.", name, 'Cell Type Name'). -column_description('Cluster_ID', "The FlyBase FBlc ID for the dataset representing the cell cluster.", identifier, 'Cell Cluster'). -column_description('Cluster_Name', "The FlyBase name for the dataset representing the cell cluster.", name, 'Cell Cluster Name'). -column_description('Clustering_Analysis_ID', "The FlyBase FBlc ID for the dataset representing the clustering analysis.", identifier, 'Dataset'). -column_description('Clustering_Analysis_Name', "The FlyBase name for the dataset representing the clustering analysis.", name, 'Dataset Name'). -column_description('Count_used', "Indicates if the RPKM expression value was calculated using only the exonic regions unique to the gene and not overlapping exons of other genes (Unique), or, if the RPKM expression value was calculated based on all exons of the gene regardless of overlap with other genes (Total).", category, 'Count Type'). -column_description('DATASAMPLE_NAME_(DATASET_ID)', "Each subsequent column reports the gene RPKM values for the sample listed in the header.", matrix, 'Expression Matrix'). -column_description('FBgn', "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). -column_description('FBgn_id', "Unique FlyBase gene ID.", identifier, 'Gene'). -column_description('FBrf#', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). -column_description('FBrf', "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). -column_description('FBrf_id', "FlyBase reference ID for the publication.", identifier, 'Reference'). -column_description('Gene_ID', "The FlyBase FBgn ID for the expressed gene.", identifier, 'Gene'). -column_description('Gene_Symbol', "The FlyBase symbol for the expressed gene.", symbol, 'Gene Symbol'). -column_description('GeneSymbol', "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). -column_description('interaction', "Interaction information associated with allele.", text, 'Interaction Info'). -column_description('Interaction_type', "Type of interaction observed, either 'suppressible' or 'enhanceable'.", category, 'Interaction Type'). -column_description('Mean_Expression', "The average level of expression of the gene across all cells of the cluster.", numeric, 'Expression Level'). -column_description('Parent_library_FBlc', "The unique FlyBase ID for the dataset project to which the RNA-Seq experiment belongs.", identifier, 'Dataset Project'). -column_description('Parent_library_name', "The official FlyBase symbol for the dataset project to which the RNA-Seq experiment belongs.", name, 'Dataset Project Name'). -column_description('phenotype_id', "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). -column_description('phenotype_name', "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). -column_description('PMID', "PubMed ID for the publication.", identifier, 'Publication'). -column_description('Pub_ID', "The FlyBase FBrf ID for the reference in which the expression was reported.", identifier, 'Publication'). -column_description('Pub_miniref', "The FlyBase citation for the publication in which the expression was reported.", citation, 'Publication Citation'). -column_description('Publication_FBrf', "Current FlyBase identifier (FBrf) of publication from which the data came.", identifier, 'Publication Reference'). -column_description('reference', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). -column_description('Release_ID', "The D. melanogaster annotation set version from which the gene model used in the analysis derives.", version, 'Annotation Version'). -column_description('RNASource_FBlc', "The unique FlyBase ID for the RNA-Seq experiment used for RPKM expression calculation.", identifier, 'RNA-Seq Experiment'). -column_description('RNASource_name', "The official FlyBase symbol for the RNA-Seq experiment used for RPKM expression calculation.", name, 'RNA-Seq Experiment Name'). -column_description('RPKM_value', "The RPKM expression value for the gene in the specified RNA-Seq experiment.", numeric, 'Expression Value'). -column_description('Source_Tissue_Anatomy', "The ansymbolical region of the source tissue used for the experiment.", category, 'Tissue Anatomy'). -column_description('Source_Tissue_Sex', "The sex of the source tissue used for the experiment.", category, 'Tissue Sex'). -column_description('Source_Tissue_Stage', "The life stage of the source tissue used for the experiment.", category, 'Tissue Stage'). -column_description('Spread', "The proportion of cells in the cluster in which the gene is detected.", proportion, 'Expression Spread'). -column_description('Total_exon_base_count', "The number of bases in all exons of this gene.", numeric, 'Total Exonic Base Count'). -column_description('UniProt_database', "Database in UniProt where the protein is listed (either UniProt/TrEMBL or UniProt/Swiss-Prot).", category, 'Protein Database'). -column_description('UniProt_id', "Unique identifier for the protein in UniProt.", identifier, 'Protein'). -column_description('Unique_exon_base_count', "The number of exonic bases unique to the gene (not overlapping exons of other genes).", numeric, 'Exonic Base Count'). -column_description(allele_FBal, "Current FlyBase identifier (FBal) of allele.", identifier, 'Allele Identifier'). -column_description(allele_symbol, "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). -column_description(current_fullname, "Current full name used in FlyBase for the object.", name, 'Name'). -column_description(current_symbol, "Current symbol used in FlyBase for the object.", symbol, 'Symbol'). -column_description(gene_fullname, "The official full name for this gene.", name, 'Gene Name'). -column_description(gene_primary_id, "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). -column_description(gene_symbol, "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). -column_description(gene_type, "The type of gene.", category, 'Gene Type'). -column_description(interaction, "Interaction information associated with allele.", text, 'Interaction Info'). -column_description(listOf('genotype_FBids', ['/', ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). -column_description(listOf('genotype_symbols', ['/', ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). -column_description(listOf('Interacting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the interacting genotype.", list, 'Gene Identifier'). -column_description(listOf('Interacting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the interacting genotype.", list, 'Gene Symbol'). -column_description(listOf('qualifier_ids', ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). -column_description(listOf('qualifier_names', ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). -column_description(listOf('Starting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the starting genotype.", list, 'Gene Identifier'). -column_description(listOf('Starting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the starting genotype.", list, 'Gene Symbol'). -column_description(listOf(fullname_synonym, ['|']), "Non-current full name(s) associated with the object.", list, 'Name Synonyms'). -column_description(listOf(genotype_FBids, [/, ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). -column_description(listOf(genotype_symbols, [/, ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). -column_description(listOf(qualifier_ids, ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). -column_description(listOf(qualifier_names, ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). -column_description(listOf(symbol_synonym, ['|']), "Non-current symbol(s) associated with the object.", list, 'Symbol Synonyms'). -column_description(organism_abbreviation, "Abbreviation indicating the species of origin.", abbreviation, 'Organism'). -column_description(phenotype_id, "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). -column_description(phenotype_name, "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). -column_description(primary_FBid, "Primary FlyBase identifier for the object.", identifier, 'Object'). -column_description(reference, "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). - -column_names('allele_genetic_interactions', ['allele_symbol', 'allele_FBal#', 'interaction', 'FBrf#']). -column_names('fb_synonym', ['primary_FBid', 'organism_abbreviation', 'current_symbol', 'current_fullname', listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). -column_names('gene_genetic_interactions', [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). -column_names('gene_rpkm_matrix', ['gene_primary_id', 'gene_symbol', 'gene_fullname', 'gene_type', 'DATASAMPLE_NAME_(DATASET_ID)']). -column_names('gene_rpkm_report', ['Release_ID', 'FBgn#', 'GeneSymbol', 'Parent_library_FBlc#', 'Parent_library_name', 'RNASource_FBlc#', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). -column_names('genotype_phenotype_data', [listOf('genotype_symbols', ['/', ' ']), listOf('genotype_FBids', ['/', ' ']), 'phenotype_name', 'phenotype_id', listOf('qualifier_names', ['|']), listOf('qualifier_ids', ['|']), 'reference']). -column_names('pmid_fbgn_uniprot', ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). -column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). - -file_location('allele_genetic_interactions', "path_to_file/allele_genetic_interactions_*.tsv"). -file_location('genotype_phenotype_data', "path_to_file/genotype_phenotype_data_*.tsv"). - -primary_column('allele_genetic_interactions', 'allele_FBal#'). -primary_column('fb_synonym', 'primary_FBid'). -primary_column('gene_genetic_interactions', 'Starting_gene_FBgn'). -primary_column('gene_rpkm_matrix', 'gene_primary_id'). -primary_column('gene_rpkm_report', 'FBgn#'). -primary_column('genotype_phenotype_data', 'genotype_FBids'). -primary_column('pmid_fbgn_uniprot', 'FBgn_id'). -primary_column('scRNA-Seq_gene_expression', 'Gene_ID'). -primary_column(allele_genetic_interactions, allele_FBal). -primary_column(dataset_metadata, 'Item_ID'). -primary_column(dmel_paralogs, 'Paralog_FBgn'). -primary_column(fb_synonym, primary_FBid). -primary_column(fbgn_exons2affy1_overlaps, 'FBgn'). -primary_column(fbgn_exons2affy2_overlaps, 'FBgn'). -primary_column(gene_genetic_interactions, 'Starting_gene_FBgn'). -primary_column(gene_rpkm_matrix, gene_primary_id). -primary_column(gene_rpkm_report, 'FBgn'). -primary_column(genotype_phenotype_data, genotype_FBids). -primary_column(pmid_fbgn_uniprot, 'FBgn_id'). - -too_generic(Var):- var(Var),!,fail. -too_generic(pub_id). -too_generic(X):- \+ symbolic_list_concat([_,_,_|_],'_',X). - - -fix_header_names(Fn,Header,GNames):- - maplist(fix_header_names(Header,Fn),Header,ArgTypes), - include( \=(''),ArgTypes,GNames). - - -%fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_','_id','_ID']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). -fix_header_names(_FL,_Fn,ID,Out):- number(ID),!,Out=ID. -fix_header_names(FL,Fn,listOf(ID),listOf(Out)):- fix_header_names(FL,Fn,ID,Out),!. -fix_header_names(FL,Fn,listOf(ID,Sep),listOf(Out,Sep)):- fix_header_names(FL,Fn,ID,Out),!. -fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(MID,RF,ID),!,fix_header_names(FL,Fn,MID,Out). -fix_header_names(FL,Fn,ID,Out):- member(RF,['#',' ','_']),symbol_concat(RF,MID,ID),!,fix_header_names(FL,Fn,MID,Out). -fix_header_names(FL,Fn,ID,Out):- member(RF,['__',' ']),symbolic_list_concat(MIDL,RF,ID),MIDL\=[_],symbolic_list_concat(MIDL,'_',MID),!, - fix_header_names(FL,Fn,MID,Out). -fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RF,['(es)','(s)','ids']),symbolic_list_concat([Left,Right],RF,ID),symbolic_list_concat([Left,Right],'_',MID),!, - fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. -fix_header_names(FL,Fn,TT,listOf(AOut)):- - member(IDs=ID,['IDs'='ID']), - symbol_concat(Type,IDs,TT), - symbol_concat(Type,ID,MID), - fix_header_names(FL,Fn,MID,AOut),!. -fix_header_names(FL,Fn,ID,listOf(AOut)):- member(RFS=RF,['_IDs'='_ID','IDs'='ID']), - symbolic_list_concat([Left,Right],RFS,ID), - symbolic_list_concat([Left,Right],RF,MID),!, - fix_header_names(FL,Fn,MID,AOut),!. % symbol_concat('ListOf_',AOut,Out),!. - - -fix_header_names(_,_,Name,Name):- \+ too_generic(Name),!. -fix_header_names(_,_,Name,Name):- symbolic_list_concat([_,_|_],'_',Name),!. -%fix_header_names(_,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_column_',Out). -%fix_header_names(FieldList,Fn,ID,Out):- symbolic_list_concat([Fn,ID],'_',Out), \+ member(Out,FieldList). -fix_header_names(_,_,Name,Name). - - -pmt :-flybase_tables(FBT),for_all(member(T,FBT), ( '\\+'(flybase_cols(T,_)) -> format('~N~q.~n',[get_fbt(T)]);true)). -use_flybase_cols(Table,Columns):- - must_det_ll(( - maplist(fix_header_names(Columns,Table),Columns,ArgTypes), - assert(flybase_col_names(Table,Columns,ArgTypes)), - do_arity_2_names(Table,ArgTypes))). - -do_arity_2_names(Table,[ID|ArgTypes]):- - must_det_ll(( - symbol_concat('data_',Table,F), - length([ID|ArgTypes],Arity), - length(Args,Arity), - DataCall=..[F|Args], - do_arity_2_names_dc(Table,DataCall,2,ArgTypes))). - -do_arity_2_names_dc(Table,DataCall,N,[Nth|ArgTypes]):- - do_arity_2_names_dc1(Table,DataCall,N,Nth),!, - N2 is N+1, do_arity_2_names_dc(Table,DataCall,N2,ArgTypes). -do_arity_2_names_dc(_Table,_DataCall,_N,[]). - -do_arity_2_names_dc1(Table,DataCall,N,Nth):- - must_det_ll(( - arg(1,DataCall,Arg1Data), - arg(N,DataCall,Arg2Data), - make_arity_2_name(Table,Nth,Arity2), - Arg1=..[Table,Arg1Data], - clip_id(Nth,NthNoID), - (Nth==NthNoID -> Arg2=Arg2Data ; Arg2 =..[NthNoID,Arg2Data]), - Arity2Call=..[Arity2,Arg1,Arg2], - fbug((Arity2Call:-DataCall)), - fb_assert((Arity2Call:-DataCall)))). - -make_arity_2_name(Table,Nth,Arity2):- - clip_id(Nth,NthNoID), - (symbol_concat(Table,_,Nth) - -> Arity2 = Nth - ; symbolic_list_concat([Table,NthNoID],'_',Arity2)). - - -clip_id(Nth,ID):- (symbol_concat(ID,'_id',Nth)->true;Nth=ID),!. - - - - -setup_flybase_cols:- - for_all(flybase_cols(Table,Columns), - use_flybase_cols(Table,Columns)). - -%:- load_flybase("das_precomputed/allele_genetic_interactions_fb_2022_06.tsv"). - - - - -flybase_cols(allele_genetic_interactions,['##allele_symbol','allele_FBal#',interaction,'FBrf#']). - -flybase_cols(analysis,[ analysis_id,name,description,program,programversion,algorithm,sourcename,sourceversion,sourceuri,timeexecuted]). -flybase_cols(analysisfeature,[ analysisfeature_id,feature_id,analysis_id,rawscore,normscore,significance,identity]). -flybase_cols(analysisgrp,[ analysisgrp_id,rawscore,normscore,significance,identity,analysis_id,grp_id]). -flybase_cols(analysisgrpmember,[ analysisgrpmember_id,rawscore,normscore,significance,identity,analysis_id,grpmember_id]). -flybase_cols(analysisprop,[ analysisprop_id,analysis_id,type_id,value]). -flybase_cols(audit_chado,[ audit_transaction,transaction_timestamp,userid,audited_table,record_pkey,record_ukey_cols,record_ukey_vals,audited_cols,audited_vals]). - -flybase_cols(cell_line,[ cell_line_id,name,uniquename,organism_id,timeaccessioned,timelastmodified]). -flybase_cols(cell_line_loaderm,[ cell_line_loaderm_id,cell_line_id,loaderm_id,pub_id,rank]). -flybase_cols(cell_line_loadermprop,[ cell_line_loadermprop_id,cell_line_loaderm_id,type_id,value,rank]). -flybase_cols(cell_line_dbxref,[ cell_line_dbxref_id,cell_line_id,dbxref_id,is_current]). -flybase_cols(cell_line_feature,[ cell_line_feature_id,cell_line_id,feature_id,pub_id]). -flybase_cols(cell_line_library,[ cell_line_library_id,cell_line_id,library_id,pub_id]). -flybase_cols(cell_line_libraryprop,[ cell_line_libraryprop_id,cell_line_library_id,type_id,value,rank]). -flybase_cols(cell_line_relationship,[ cell_line_relationship_id,subject_id,object_id,type_id]). -flybase_cols(cell_line_strain,[ cell_line_strain_id,strain_id,cell_line_id,pub_id]). -flybase_cols(cell_line_strainprop,[ cell_line_strainprop_id,cell_line_strain_id,type_id,value,rank]). -flybase_cols(cell_line_synonym,[ cell_line_synonym_id,cell_line_id,synonym_id,pub_id,is_current,is_internal]). -flybase_cols(cell_lineprop,[ cell_lineprop_id,cell_line_id,type_id,value,rank]). -flybase_cols(cell_lineprop_pub,[ cell_lineprop_pub_id,cell_lineprop_id,pub_id]). -flybase_cols(cell_line_pub,[ cell_line_pub_id,cell_line_id,pub_id]). -flybase_cols(contact,[ contact_id,description,name]). -flybase_cols(cv,[ cv_id,name,definition]). -flybase_cols(loaderm,[ loaderm_id,cv_id,definition,dbxref_id,is_obsolete,is_relationshiptype,name]). -flybase_cols(loaderm_dbxref,[ loaderm_dbxref_id,loaderm_id,dbxref_id,is_for_definition]). -flybase_cols(loaderm_relationship,[ loaderm_relationship_id,type_id,subject_id,object_id]). -flybase_cols(loadermpath,[ loadermpath_id,type_id,subject_id,object_id,cv_id,pathdistance]). -flybase_cols(loadermprop,[ loadermprop_id,loaderm_id,type_id,value,rank]). -flybase_cols(loadermsynonym,[ loadermsynonym_id,loaderm_id,name,type_id]). -flybase_cols(db,[ db_id,name,contact_id,description,urlprefix,url]). -flybase_cols(dbxref,[ dbxref_id,db_id,accession,version,description,url]). -flybase_cols(dbxrefprop,[ dbxrefprop_id,dbxref_id,type_id,value,rank]). -flybase_cols(eimage,[ eimage_id,eimage_data,eimage_type,image_uri]). -flybase_cols(environment,[ environment_id,uniquename,description]). -flybase_cols(environment_loaderm,[ environment_loaderm_id,environment_id,loaderm_id]). -flybase_cols(expression,[ expression_id,uniquename,md5checksum,description]). -flybase_cols(expression_loaderm,[ expression_loaderm_id,expression_id,loaderm_id,rank,loaderm_type_id]). -flybase_cols(expression_loadermprop,[ expression_loadermprop_id,expression_loaderm_id,type_id,value,rank]). -flybase_cols(expression_image,[ expression_image_id,expression_id,eimage_id]). -flybase_cols(expressionprop,[ expressionprop_id,expression_id,type_id,value,rank]). -flybase_cols(expression_pub,[ expression_pub_id,expression_id,pub_id]). -flybase_cols(feature,[ feature_id,dbxref_id,organism_id,name,uniquename,residues,seqlen,md5checksum,type_id,is_analysis,timeaccessioned,timelastmodified,is_obsolete]). -flybase_cols(feature_loaderm,[ feature_loaderm_id,feature_id,loaderm_id,pub_id,is_not]). -flybase_cols(feature_loaderm_dbxref,[ feature_loaderm_dbxref_id,feature_loaderm_id,dbxref_id]). -flybase_cols(feature_loadermprop,[ feature_loadermprop_id,feature_loaderm_id,type_id,value,rank]). -flybase_cols(feature_dbxref,[ feature_dbxref_id,feature_id,dbxref_id,is_current]). -flybase_cols(feature_expression,[ feature_expression_id,expression_id,feature_id,pub_id]). -flybase_cols(feature_expressionprop,[ feature_expressionprop_id,feature_expression_id,type_id,value,rank]). -flybase_cols(feature_genotype,[ feature_genotype_id,feature_id,genotype_id,chromosome_id,rank,cgroup,loaderm_id]). -flybase_cols(feature_grpmember,[ feature_grpmember_id,grpmember_id,feature_id]). -flybase_cols(feature_grpmember_pub,[ feature_grpmember_pub_id,pub_id,feature_grpmember_id]). -flybase_cols(feature_humanhealth_dbxref,[ feature_humanhealth_dbxref_id,humanhealth_dbxref_id,feature_id,pub_id]). -flybase_cols(feature_interaction,[ feature_interaction_id,feature_id,interaction_id,role_id,rank]). -flybase_cols(feature_interactionprop,[ feature_interactionprop_id,feature_interaction_id,type_id,value,rank]). -flybase_cols(feature_interaction_pub,[ feature_interaction_pub_id,feature_interaction_id,pub_id]). -flybase_cols(feature_phenotype,[ feature_phenotype_id,feature_id,phenotype_id]). -flybase_cols(feature_pubprop,[ feature_pubprop_id,feature_pub_id,type_id,value,rank]). -flybase_cols(feature_relationship,[ feature_relationship_id,subject_id,object_id,type_id,rank,value]). -flybase_cols(feature_relationshipprop,[ feature_relationshipprop_id,feature_relationship_id,type_id,value,rank]). -flybase_cols(feature_relationshipprop_pub,[ feature_relationshipprop_pub_id,feature_relationshipprop_id,pub_id]). -flybase_cols(feature_relationship_pub,[ feature_relationship_pub_id,feature_relationship_id,pub_id]). -flybase_cols(feature_synonym,[ feature_synonym_id,synonym_id,feature_id,pub_id,is_current,is_internal]). -flybase_cols(featureloc,[ featureloc_id,feature_id,srcfeature_id,fmin,is_fmin_partial,fmax,is_fmax_partial,strand,phase,residue_info,locgroup,rank]). -flybase_cols(featureloc_pub,[ featureloc_pub_id,featureloc_id,pub_id]). -flybase_cols(featuremap,[ featuremap_id,name,description,unittype_id]). -flybase_cols(featuremap_pub,[ featuremap_pub_id,featuremap_id,pub_id]). -flybase_cols(featurepos,[ featurepos_id,featuremap_id,feature_id,map_feature_id,mappos]). -flybase_cols(featureprop,[ featureprop_id,feature_id,type_id,value,rank]). -flybase_cols(featureprop_pub,[ featureprop_pub_id,featureprop_id,pub_id]). -flybase_cols(feature_pub,[ feature_pub_id,feature_id,pub_id]). -flybase_cols(featurerange,[ featurerange_id,featuremap_id,feature_id,leftstartf_id,leftendf_id,rightstartf_id,rightendf_id,rangestr]). -flybase_cols(genotype,[ genotype_id,uniquename,description,name,is_obsolete]). -flybase_cols(genotype_loaderm,[ genotype_loaderm_id,genotype_id,loaderm_id,pub_id,is_not,rank]). -flybase_cols(genotype_loadermprop,[ genotype_loadermprop_id,genotype_loaderm_id,type_id,value,rank]). -flybase_cols(genotype_dbxref,[ genotype_dbxref_id,genotype_id,dbxref_id,is_current]). -flybase_cols(genotype_synonym,[ genotype_synonym_id,genotype_id,synonym_id,pub_id,is_current,is_internal]). -flybase_cols(genotypeprop,[ genotypeprop_id,genotype_id,type_id,value,rank,cvalue_id]). -flybase_cols(genotypeprop_pub,[ genotypeprop_pub_id,genotypeprop_id,pub_id]). -flybase_cols(genotype_pub,[ genotype_pub_id,genotype_id,pub_id]). -flybase_cols(grp,[ grp_id,name,uniquename,type_id,is_analysis,is_obsolete]). -flybase_cols(grp_loaderm,[ grp_loaderm_id,is_not,loaderm_id,grp_id,pub_id]). -flybase_cols(grp_dbxref,[ grp_dbxref_id,is_current,dbxref_id,grp_id]). -flybase_cols(grp_pubprop,[ grp_pubprop_id,value,rank,type_id,grp_pub_id]). -flybase_cols(grp_relationship,[ grp_relationship_id,value,rank,type_id,subject_id,object_id]). -flybase_cols(grp_relationshipprop,[ grp_relationshipprop_id,value,rank,type_id,grp_relationship_id]). -flybase_cols(grp_relationship_pub,[ grp_relationship_pub_id,pub_id,grp_relationship_id]). -flybase_cols(grp_synonym,[ grp_synonym_id,synonym_id,grp_id,pub_id,is_current,is_internal]). -flybase_cols(grpmember,[ grpmember_id,rank,type_id,grp_id]). -flybase_cols(grpmember_loaderm,[ grpmember_loaderm_id,is_not,loaderm_id,grpmember_id,pub_id]). -flybase_cols(grpmemberprop,[ grpmemberprop_id,value,rank,type_id,grpmember_id]). -flybase_cols(grpmemberprop_pub,[ grpmemberprop_pub_id,pub_id,grpmemberprop_id]). -flybase_cols(grpmember_pub,[ grpmember_pub_id,pub_id,grpmember_id]). -flybase_cols(grpprop,[ grpprop_id,value,rank,type_id,grp_id]). -flybase_cols(grpprop_pub,[ grpprop_pub_id,pub_id,grpprop_id]). -flybase_cols(grp_pub,[ grp_pub_id,pub_id,grp_id]). -flybase_cols(humanhealth,[ humanhealth_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). -flybase_cols(humanhealth_loaderm,[ humanhealth_loaderm_id,humanhealth_id,loaderm_id,pub_id]). -flybase_cols(humanhealth_loadermprop,[ humanhealth_loadermprop_id,humanhealth_loaderm_id,type_id,value,rank]). -flybase_cols(humanhealth_dbxref,[ humanhealth_dbxref_id,humanhealth_id,dbxref_id,is_current]). -flybase_cols(humanhealth_dbxrefprop,[ humanhealth_dbxrefprop_id,humanhealth_dbxref_id,type_id,value,rank]). -flybase_cols(humanhealth_dbxrefprop_pub,[ humanhealth_dbxrefprop_pub_id,humanhealth_dbxrefprop_id,pub_id]). -flybase_cols(humanhealth_feature,[ humanhealth_feature_id,humanhealth_id,feature_id,pub_id]). -flybase_cols(humanhealth_featureprop,[ humanhealth_featureprop_id,humanhealth_feature_id,type_id,value,rank]). -flybase_cols(humanhealth_phenotype,[ humanhealth_phenotype_id,humanhealth_id,phenotype_id,pub_id]). -flybase_cols(humanhealth_phenotypeprop,[ humanhealth_phenotypeprop_id,humanhealth_phenotype_id,type_id,value,rank]). -flybase_cols(humanhealth_pubprop,[ humanhealth_pubprop_id,value,rank,type_id,humanhealth_pub_id]). -flybase_cols(humanhealth_relationship,[ humanhealth_relationship_id,subject_id,object_id,type_id,value,rank]). -flybase_cols(humanhealth_relationship_pub,[ humanhealth_relationship_pub_id,humanhealth_relationship_id,pub_id]). -flybase_cols(humanhealth_synonym,[ humanhealth_synonym_id,humanhealth_id,synonym_id,pub_id,is_current,is_internal]). -flybase_cols(humanhealthprop,[ humanhealthprop_id,humanhealth_id,type_id,value,rank]). -flybase_cols(humanhealthprop_pub,[ humanhealthprop_pub_id,humanhealthprop_id,pub_id]). -flybase_cols(humanhealth_pub,[ humanhealth_pub_id,humanhealth_id,pub_id]). -flybase_cols(interaction,[ interaction_id,uniquename,type_id,description,is_obsolete]). -flybase_cols(interaction_cell_line,[ interaction_cell_line_id,cell_line_id,interaction_id,pub_id]). -flybase_cols(interaction_loaderm,[ interaction_loaderm_id,interaction_id,loaderm_id]). -flybase_cols(interaction_loadermprop,[ interaction_loadermprop_id,interaction_loaderm_id,type_id,value,rank]). -flybase_cols(interaction_expression,[ interaction_expression_id,expression_id,interaction_id,pub_id]). -flybase_cols(interaction_expressionprop,[ interaction_expressionprop_id,interaction_expression_id,type_id,value,rank]). -flybase_cols(interaction_group,[ interaction_group_id,uniquename,is_obsolete,description]). -flybase_cols(interaction_group_feature_interaction,[ interaction_group_feature_interaction_id,interaction_group_id,feature_interaction_id,rank,ftype]). -flybase_cols(interactionprop,[ interactionprop_id,interaction_id,type_id,value,rank]). -flybase_cols(interactionprop_pub,[ interactionprop_pub_id,interactionprop_id,pub_id]). -flybase_cols(interaction_pub,[ interaction_pub_id,interaction_id,pub_id]). -flybase_cols(library,[ library_id,organism_id,name,uniquename,type_id,is_obsolete,timeaccessioned,timelastmodified]). -flybase_cols(library_loaderm,[ library_loaderm_id,library_id,loaderm_id,pub_id]). -flybase_cols(library_loadermprop,[ library_loadermprop_id,library_loaderm_id,type_id,value,rank]). -flybase_cols(library_dbxref,[ library_dbxref_id,library_id,dbxref_id,is_current]). -flybase_cols(library_dbxrefprop,[ library_dbxrefprop_id,library_dbxref_id,type_id,value,rank]). -flybase_cols(library_expression,[ library_expression_id,expression_id,library_id,pub_id]). -flybase_cols(library_expressionprop,[ library_expressionprop_id,library_expression_id,type_id,value,rank]). -flybase_cols(library_feature,[ library_feature_id,library_id,feature_id]). -flybase_cols(library_featureprop,[ library_featureprop_id,library_feature_id,type_id,value,rank]). -flybase_cols(library_grpmember,[ library_grpmember_id,grpmember_id,library_id]). -flybase_cols(library_humanhealth,[ library_humanhealth_id,humanhealth_id,library_id,pub_id]). -flybase_cols(library_humanhealthprop,[ library_humanhealthprop_id,library_humanhealth_id,type_id,value,rank]). -flybase_cols(library_interaction,[ library_interaction_id,interaction_id,library_id,pub_id]). -flybase_cols(library_relationship,[ library_relationship_id,subject_id,object_id,type_id]). -flybase_cols(library_relationship_pub,[ library_relationship_pub_id,library_relationship_id,pub_id]). -flybase_cols(library_strain,[ library_strain_id,strain_id,library_id,pub_id]). -flybase_cols(library_strainprop,[ library_strainprop_id,library_strain_id,type_id,value,rank]). -flybase_cols(library_synonym,[ library_synonym_id,synonym_id,library_id,pub_id,is_current,is_internal]). -flybase_cols(libraryprop,[ libraryprop_id,library_id,type_id,value,rank]). -flybase_cols(libraryprop_pub,[ libraryprop_pub_id,libraryprop_id,pub_id]). -flybase_cols(library_pub,[ library_pub_id,library_id,pub_id]). -flybase_cols(lock,[ lock_id,username,locktype,lockname,lockrank,lockstatus,timeaccessioend,timelastmodified,chadoxmlfile,comment,task]). -flybase_cols(organism,[ organism_id,abbreviation,genus,species,common_name,comment]). -flybase_cols(organism_loaderm,[ organism_loaderm_id,organism_id,loaderm_id,rank,pub_id]). -flybase_cols(organism_loadermprop,[ organism_loadermprop_id,organism_loaderm_id,type_id,value,rank]). -flybase_cols(organism_dbxref,[ organism_dbxref_id,organism_id,dbxref_id,is_current]). -flybase_cols(organism_grpmember,[ organism_grpmember_id,grpmember_id,organism_id]). -flybase_cols(organism_library,[ organism_library_id,organism_id,library_id]). -flybase_cols(organismprop,[ organismprop_id,organism_id,type_id,value,rank]). -flybase_cols(organismprop_pub,[ organismprop_pub_id,organismprop_id,pub_id]). -flybase_cols(organism_pub,[ organism_pub_id,organism_id,pub_id]). -flybase_cols(phendesc,[ phendesc_id,genotype_id,environment_id,description,type_id,pub_id]). -flybase_cols(phenotype,[ phenotype_id,uniquename,observable_id,attr_id,value,cvalue_id,assay_id]). -flybase_cols(phenotype_comparison,[ phenotype_comparison_id,genotype1_id,environment1_id,genotype2_id,environment2_id,phenotype1_id,phenotype2_id,pub_id,organism_id]). -flybase_cols(phenotype_comparison_loaderm,[ phenotype_comparison_loaderm_id,phenotype_comparison_id,loaderm_id,rank]). -flybase_cols(phenotype_loaderm,[ phenotype_loaderm_id,phenotype_id,loaderm_id,rank]). -flybase_cols(phenstatement,[ phenstatement_id,genotype_id,environment_id,phenotype_id,type_id,pub_id]). -flybase_cols(project,[ project_id,name,description]). -flybase_cols(pub,[ pub_id,title,volumetitle,volume,series_name,issue,pyear,pages,miniref,type_id,is_obsolete,publisher,pubplace,uniquename]). -flybase_cols(pub_dbxref,[ pub_dbxref_id,pub_id,dbxref_id,is_current]). -flybase_cols(pub_relationship,[ pub_relationship_id,type_id,subject_id,object_id]). -flybase_cols(pubauthor,[ pubauthor_id,pub_id,rank,editor,surname,givennames,suffix]). -flybase_cols(pubprop,[ pubprop_id,pub_id,type_id,value,rank]). -flybase_cols(stock,[ stock_id,dbxref_id,organism_id,name,uniquename,description,type_id,is_obsolete]). -flybase_cols(stock_loaderm,[ stock_loaderm_id,stock_id,loaderm_id,pub_id]). -flybase_cols(stock_dbxref,[ stock_dbxref_id,stock_id,dbxref_id,is_current]). -flybase_cols(stock_genotype,[ stock_genotype_id,stock_id,genotype_id]). -flybase_cols(stock_relationship,[ stock_relationship_id,subject_id,object_id,type_id,value,rank]). -flybase_cols(stock_relationship_pub,[ stock_relationship_pub_id,stock_relationship_id,pub_id]). -flybase_cols(stockcollection,[ stockcollection_id,type_id,contact_id,name,uniquename]). -flybase_cols(stockcollection_stock,[ stockcollection_stock_id,stockcollection_id,stock_id]). -flybase_cols(stockcollectionprop,[ stockcollectionprop_id,stockcollection_id,type_id,value,rank]). -flybase_cols(stockprop,[ stockprop_id,stock_id,type_id,value,rank]). -flybase_cols(stockprop_pub,[ stockprop_pub_id,stockprop_id,pub_id]). -flybase_cols(stock_pub,[ stock_pub_id,stock_id,pub_id]). -flybase_cols(strain,[ strain_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). -flybase_cols(strain_loaderm,[ strain_loaderm_id,strain_id,loaderm_id,pub_id]). -flybase_cols(strain_loadermprop,[ strain_loadermprop_id,strain_loaderm_id,type_id,value,rank]). -flybase_cols(strain_dbxref,[ strain_dbxref_id,strain_id,dbxref_id,is_current]). -flybase_cols(strain_feature,[ strain_feature_id,strain_id,feature_id,pub_id]). -flybase_cols(strain_featureprop,[ strain_featureprop_id,strain_feature_id,type_id,value,rank]). -flybase_cols(strain_phenotype,[ strain_phenotype_id,strain_id,phenotype_id,pub_id]). -flybase_cols(strain_phenotypeprop,[ strain_phenotypeprop_id,strain_phenotype_id,type_id,value,rank]). -flybase_cols(strain_relationship,[ strain_relationship_id,subject_id,object_id,type_id,value,rank]). -flybase_cols(strain_relationship_pub,[ strain_relationship_pub_id,strain_relationship_id,pub_id]). -flybase_cols(strain_synonym,[ strain_synonym_id,strain_id,synonym_id,pub_id,is_current,is_internal]). -flybase_cols(strainprop,[ strainprop_id,strain_id,type_id,value,rank]). -flybase_cols(strainprop_pub,[ strainprop_pub_id,strainprop_id,pub_id]). -flybase_cols(strain_pub,[ strain_pub_id,strain_id,pub_id]). -flybase_cols(synonym,[ synonym_id,name,type_id,synonym_sgml]). -flybase_cols(tableinfo,[ tableinfo_id,name,primary_key_column,is_view,view_on_table_id,superclass_table_id,is_updateable,modification_date]). -flybase_cols(update_track,[ update_track_id,release,fbid,time_update,author,statement,comment,annotation_id]). - - -table_columns(T,List):- table_columns_tt(TT,List), eigther_contains(T,TT),!. - -table_columns_tt(TT,List):- column_names(TT,List). -table_columns_tt(TT,List):- flybase_cols(TT,List). -table_columns_tt(TT,List):- t_h_n(TT,_,List). - -eigther_contains(TT,T):- TT=T,!. -eigther_contains(T,TT):- symbol_contains(T,TT),!. -eigther_contains(TT,T):- symbol_contains(T,TT),!. - - - - - -column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). -column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). -column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). -column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). -column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). -column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). -column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). -% #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference -column_names(automated_gene_summaries, [primary_FBgn, summary_text]). -column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). -column_names(cDNA_clone, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). -column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). -column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). -column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). -column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). -column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). -column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). -column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). -column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). -column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). -column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). -column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). -column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). -column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). -column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). -column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). -column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). -column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). -column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). -column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). -column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). -column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). -column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). -column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). -column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). -column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). -column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). - -column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). -column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). -column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). -column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). -column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). -column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). - -column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). -column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). -column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). - -flybase_tables([ -analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, -cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, -cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, -loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, -expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, -feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, -feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, -feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, -feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, -featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, -genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, -grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, -grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, -humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, -humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, -humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, -interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, -interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, -library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, -library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, - libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, - organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, - phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, - sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, - stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, - strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, -strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). - - - -table_n_type(allele_genetic_interactions, 1, allele_symbol, _). -table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). -table_n_type(allele_genetic_interactions, 3, interaction, _). -table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). -table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). -table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). -table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). -table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). -table_n_type(disease_model_annotations, 5, 'DO', _). -table_n_type(disease_model_annotations, 6, 'DO_term', _). -table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). -table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). -table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). -table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). -table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). -table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). -table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). -table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). -table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). -table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). -table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). -table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). -table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). -table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). -table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). -table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). -table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). -table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). -table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). -table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). -table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). -table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). -table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). -table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). -table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). -table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). -table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). -table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). -table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). -table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). -table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). -table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). -table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). -table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). -table_n_type(gene_map_table, 1, organism_abbreviation, _). -table_n_type(gene_map_table, 2, current_symbol, _). -table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). -table_n_type(gene_map_table, 4, recombination_loc, _). -table_n_type(gene_map_table, 5, cytogenetic_loc, _). -table_n_type(gene_map_table, 6, sequence_loc, _). -table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). -table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). -table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). -table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). -table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). -table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). -table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). -table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). -table_n_type(physical_interactions_mitab, 9, 'Publication', _). -table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). -table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). -table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). -table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). -table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). -table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). -table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). -table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). -table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). -table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). -table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). -table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). -table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). -table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). -table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). -table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). -table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). -table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). -table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). -table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). -table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). -table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). -table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). -table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). -table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). -table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). -table_n_type(physical_interactions_mitab, 36, 'Negative', _). -table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). -table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). -table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). -table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). -table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). -table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). -table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). -table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). -table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). -table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). -table_n_type(cDNA_clone, 1, 'FBcl', 'FBcl'). -table_n_type(cDNA_clone, 2, organism_abbreviation, _). -table_n_type(cDNA_clone, 3, clone_name, _). -table_n_type(cDNA_clone, 4, dataset_metadata_name, _). -table_n_type(cDNA_clone, 5, cDNA_accession, _). -table_n_type(cDNA_clone, 6, 'EST_accession', _). -table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). -table_n_type(genomic_clone, 2, organism_abbreviation, _). -table_n_type(genomic_clone, 3, clone_name, _). -table_n_type(genomic_clone, 4, accession, _). -/* -table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). -table_n_type(fbgn_uniprot, 2, gene_symbol, _). -table_n_type(fbgn_uniprot, 3, 'CG', _). -table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). -table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). -table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). -table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -*/ -table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). -table_n_type(automated_gene_summaries, 2, summary_text, _). - -table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). -table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). -table_n_type(best_gene_summary, 3, 'Summary_Source', _). -table_n_type(best_gene_summary, 4, 'Summary', _). -table_n_type('Dmel_enzyme', 1, gene_group_id, _). -table_n_type('Dmel_enzyme', 2, gene_group_name, _). -table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). -table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). -table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). -table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). -table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). -table_n_type('Dmel_enzyme', 8, gene_symbol, _). -table_n_type('Dmel_enzyme', 9, gene_name, _). -table_n_type('Dmel_enzyme', 10, gene_EC_number, _). -table_n_type('Dmel_enzyme', 11, gene_EC_name, _). -table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). -table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). -table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). -table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). -table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). -table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). -table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). -table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). -table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). -table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). -table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). -table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). -table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). -table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). -table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). -table_n_type(fbgn_gleanr, 2, gene_symbol, _). -table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_gleanr, 4, 'GLEANR', _). -/* -table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). -table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). -table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). -table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). -table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). -table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). -table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). -table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). -table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). -*/ -table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). -table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). -table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). -table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). -table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). -table_n_type(gene_group, 1, 'FB_group', 'FBgg'). -table_n_type(gene_group, 2, 'FB_group_symbol', _). -table_n_type(gene_group, 3, 'FB_group_name', _). -table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). -table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). -table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). -table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). -table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). -table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). -table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). -table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). -table_n_type(gene_rpkm_matrix, 4, gene_type, _). -table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). -table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). -table_n_type(gene_rpkm_report, 1, 'Release_ID', _). -table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). -table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). -table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). -table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). -table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). -table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). -table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). -table_n_type(gene_rpkm_report, 9, 'Bin_value', _). -table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). -table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). -table_n_type(gene_rpkm_report, 12, 'Count_used', _). -table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). -table_n_type(gene_snapshots, 2, 'GeneSymbol', _). -table_n_type(gene_snapshots, 3, 'GeneName', _). -table_n_type(gene_snapshots, 4, datestamp, _). -table_n_type(gene_snapshots, 5, gene_snapshot_text, _). -table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). -table_n_type(pathway_group, 2, 'FB_group_symbol', _). -table_n_type(pathway_group, 3, 'FB_group_name', _). -table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). -table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). -table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). -table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). -table_n_type(insertion_mapping, 1, insertion_symbol, _). -table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). -table_n_type(insertion_mapping, 3, genomic_location, _). -table_n_type(insertion_mapping, 4, range, _). -table_n_type(insertion_mapping, 5, orientation, _). -table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). -table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). -table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). -table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). -table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). -table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). -table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). -table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). -table_n_type(dataset_metadata, 3, 'Item_ID', _). -table_n_type(dataset_metadata, 4, 'Item_Name', _). -table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). -table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). -table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). -table_n_type(dmel_paralogs, 4, 'Location', _). -table_n_type(dmel_paralogs, 5, 'Strand', _). -table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). -table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). -table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). -table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). -table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). -table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). -table_n_type(entity_publication, 1, entity_id, _). -table_n_type(entity_publication, 2, entity_name, _). -table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). -table_n_type(entity_publication, 4, 'PubMed', _). -table_n_type(organism_list, 1, genus, _). -table_n_type(organism_list, 2, species, _). -table_n_type(organism_list, 3, abbreviation, _). -table_n_type(organism_list, 4, common_name, _). -table_n_type(organism_list, 5, 'NCBI_taxon', _). -table_n_type(organism_list, 6, 'drosophilid?', _). -table_n_type(stocks, 1, stock_id, 'FBst'). -table_n_type(stocks, 2, dbxref_id, _). -table_n_type(stocks, 3, organism_id, _). -table_n_type(stocks, 4, name, _). -table_n_type(stocks, 5, uniquename, _). -table_n_type(stocks, 6, description, _). -table_n_type(stocks, 7, type_id, _). -table_n_type(stocks, 8, is_obsolete, _). -table_n_type(synonym, 1, primary_FBid, 'FBgn'). -table_n_type(synonym, 2, organism_abbreviation, _). -table_n_type(synonym, 3, current_symbol, _). -table_n_type(synonym, 4, current_fullname, _). -table_n_type(synonym, 5, fullname_synonym, _). -table_n_type(synonym, 6, symbol_synonym, _). - - -guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). - -:- dynamic numeric_value_p_n/3. -:- module_transparent numeric_value_p_n/3. - -numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). -numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). -numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). -numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). -numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). -numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). -numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). -numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). -numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). -numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). -numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). -numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). -numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). -numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). -numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). -numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). -numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). -numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). -numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). -numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). -numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). -numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). -numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). -numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). -numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). -numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). -numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). -numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). -numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). -numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). -numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). -numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). -numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). -numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). -numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). -numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). -numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). -numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). -numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). -numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). -numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). -numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). -numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). -numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). -numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). -numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). -numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). -numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). -numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). -numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). -numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). -numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). -numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). -numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). -numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). -numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). -numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). -numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). -numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). -numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). -numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). -numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). -numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). -numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). -numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). -numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). -numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). -numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). -numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). -numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). -numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). -numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). -numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). -numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). -numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). -numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). -numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). -numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). -numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). -numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). -numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). -numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). -numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). -numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). -numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). -numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). -numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). -numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). -numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). -numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). -numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). -numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). -numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). -numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). -numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). -numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). -numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). -numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). -numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). -numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). -numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). -numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). -numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). -numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). -numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). -numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). -numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). -numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). -numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). -numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). -numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). -numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). -numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). -numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). -numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). -numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). -numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). -numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). -numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). -numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). -numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). -numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). -numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). -numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). -numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). -numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). -numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). -numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). -numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). -numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). -numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). -numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). -numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). -numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). -numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). -numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). -numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). -numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). -numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). -numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). -numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). -numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). -numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). -numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). -numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). -numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). -numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). -numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). -numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). -numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). -numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). -numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). -numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). -numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). -numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). -numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). -numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). -numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). -numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). -numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). -numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). -numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). -numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). -numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). -numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). -numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). -numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). -numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). -numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). -numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). -numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). -numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). -numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). -numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). -numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). -numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). -numeric_value_p_n(gene_snapshots, 4, datestamp). -numeric_value_p_n(insertion_mapping, 5, orientation). -numeric_value_p_n(dmel_paralogs, 5, 'Strand'). -numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). -numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). -numeric_value_p_n(entity_publication, 4, 'PubMed'). -numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). - - -ncRNA_genes_fb_scheme( -' -{ - "$schema": "http://json-schema.org/draft-04/schema#", - "title": "RNAcentral ncRNA object", - "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", - "id": "ncrna.json#", - "type": "object", - "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], - "additionalProperties": false, - "properties": { - "primaryId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." - }, - "taxonId": { - "$ref" : "global-id.json#/properties/globalId", - "description" : "The NCBI taxonId for the species of the gene entity." - }, - "soTermId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." - }, - "ecoTermId": { - "$ref" : "global-id.json#/properties/globalId", - "description": "The ECO Term that represents the evidence for this sequence having the given SO term." - }, - "sequence": { - "$ref": "sequence.json#properties/sequence", - "description": "The DNA sequence of this entry." - }, - "name": { - "type": "string", - "description": "The name of this sequence." - }, - "description": { - "type": "string", - "description": "An informative human readable description. If not provided then it will be generated using the name and species information." - }, - "symbol": { - "type": "string", - "description": "The symbol for this ncRNA" - }, - "symbolSynonyms": { - "type": "array", - "items": { - "type": "string" - }, - "uniqueItems": true, - "description": "A list of other symbols for the ncRNA" - }, - "version": { - "description": "The version of this sequence, if any" - }, - "gene": { - "$ref": "gene.json#" - }, - "crossReferenceIds": { - "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", - "type": "array", - "items": { - "$ref" : "global-id.json#/properties/globalId" - }, - "uniqueItems": true - }, - "genomeLocations": { - "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", - "type": "array", - "items": { - "$ref" : "location.json#" - }, - "uniqueItems": true - }, - "url": { - "type": "string", - "format": "uri", - "description": "URL to the page for this entry in the database" - }, - "externalUrl": { - "type": "string", - "format": "uri", - "description": "URL to a synopsis outside the database, like wikipedia." - }, - "secondaryStructure": { - "description": "The secondary structure in dot-bracket notation for this sequence", - "$ref": "secondary-structure.json#/properties/dot_bracket" - }, - "publications": { - "description": "List of references to associate with this sequence.", - "type": "array", - "items": { - "anyOf": [ - { "$ref": "publications.json#/properties/pubMedId" }, - { "$ref": "publications.json#/properties/doi" } - ] - }, - "uniqueItems": true - }, - "localization": { - "description": "Name of the organelle or plasmid this sequence is found in", - "enum": [ - "mitochondria", - "plastid", - "chloroplast", - "plasmid" - ] - }, - "sequenceFeatures": { - "anticodon": { - "description": "Information about the anticodon", - "$ref": "anticodon.json#" - }, - "modifications": { - "description": "List of the modifications in this sequence", - "type": "array", - "items": { - "$ref": "modification.json#" - }, - "uniqueItems": true - } - }, - "sourceModel": { - "description": "Information about the model used to find this sequence", - "$ref" : "global-id.json#/properties/globalId" - }, - "product": { - "description": "The name of the product, this should be more specific than the name of the SO term that was provided", - "type": "string" - }, - "additionalAnnotations": { - "isoType": { - "description": "The isoType of this tRNA", - "enum": [ - "Ala", - "Cys", - "Asp", - "Glu", - "Phe", - "Gly", - "His", - "Ile", - "Lys", - "Leu", - "iMet", - "Met", - "Asn", - "Pro", - "Gln", - "Arg", - "Ser", - "Thr", - "Val", - "Trp", - "Tyr" - ] - } - }, - "relatedSequences": { - "description": "Information about related sequences, like precursors or targets", - "type": "array", - "items": { - "$ref": "related-sequence.json#" - }, - "uniqueItems": true - }, - "inferredPhylogeny": { - "description": "A phylogeny that has been inferred for this sequence", - "$ref": "inferred-phylogeny.json#" - } - } -}'). - - - -ucn(allele_genetic_interactions,[]). -ucn(dataset_metadata,[]). -ucn(disease_model_annotations,[]). -ucn('Dmel_enzyme',[]). -ucn(dmel_gene_sequence_ontology_annotations,[]). -ucn(dmel_human_orthologs_disease,[]). -ucn(dmel_paralogs,[]). -ucn(entity_publication,[]). -ucn(fbgn_gleanr,[]). -ucn(fbgn_NAseq_Uniprot,[]). -ucn(fbgn_uniprot,[]). -ucn(gene_functional_complementation,[]). -ucn(gene_genetic_interactions,[]). -ucn(gene_group,[]). -ucn(gene_groups_HGNC,[]). -ucn(genotype_phenotype,[]). -ucn(insertion_mapping,[]). -ucn(organism_list,[]). -ucn(pathway_group,[]). -ucn(pmid_fbgn_uniprot,[]). -ucn('scRNA-Seq_gene_expression',[]). - -ucn(dmel_unique_protein_isoforms, 3). % ,a-PA,)) -ucn(best_gene_summary, 1). % ,FBgn0031081,) (2 ,Nep3,)) -ucn(cDNA_clone, 1). % ,FBcl0000001,) (3 ,UUGC0315,)) -ucn(fb_synonym, 1). % ,FBal0000001,)) -ucn(fbal_to_fbgn, 1). % ,FBal0137236,)) -ucn(fbgn_annotation_ID.tsv, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) -ucn(fbgn_annotation_ID, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) -ucn(fbgn_fbtr_fbpp_expanded, 8). % ,FBtr0081624,) (9 ,7SLRNA:CR32864-RA,)) -ucn(fbgn_fbtr_fbpp, 2). % ,FBtr0081624,)) -ucn(fbrf_pmid_pmcid_doi, 1). % ,FBrf0026179,) (2 ,37280885,)) -ucn(gene_map_table, 2). % ,snRNA:4.5S,) (3 ,FBgn0000001,)) -ucn(gene_rpkm_matrix, 1). % ,FBgn0031081,) (2 ,Nep3,)) -ucn(gene_rpkm_report,[]). -ucn(gene_snapshots, 1). % ,FBgn0052532,) (2 ,CG32532,)) -ucn('genome-cyto-seq', 1). % ,21B2,) (2 ,98620,) (3 ,134010,)) -ucn('cyto-genetic-seq', 1). % ,1A,)) -ucn(genomic_clone, 1). % ,FBcl0297251,) (3 ,BACR13J02,)) -ucn(stocks ,1). % ,FBst,)) -ucn(physical_interactions_mitab, 14). %,flybase:FBrf0218395-7641.DPiM,)) - - -list_column_names:- - for_all((column_names(T,CNs),once((length(CNs,Len),Len>=2,fb_pred_nr(T,Len)))), - (print(column_names(T,CNs)),nl)). - - -%:- ensure_loaded(read_obo). - -show_cmds:- prolog_load_context(source,This),for_all((source_file(P0,This),functor(P0,F,0)),writeln(add_history1(F))). -%add_history1(setup_flybase_cols) -%add_history1(pmt) -ah:- add_history1(fb_stats), - add_history1(mine_overlaps), - add_history1(load_flybase), - add_history(fb_stats), - add_history(mine_overlaps), - add_history(try_overlaps), - add_history(load_flybase). -%:- ah,ah,ah. - -%:- initialization(load_flybase). - - - - - -fb_pred('allele_genetic_interactions',4). -fb_pred('automated_gene_summaries',2). -fb_pred('automated_gene_summaries',3). -fb_pred('best_gene_summary',4). -fb_pred('cDNA_clone',6). -fb_pred('cDNA_clone_data',5). -fb_pred('cDNA_clone_data',6). -fb_pred('cyto_genetic_seq',4). -fb_pred('cyto-genetic-seq',4). -fb_pred('dataset_metadata',4). -fb_pred('directory',2). -fb_pred('disease_model_annotations',12). -fb_pred('disease_model_annotations',9). -fb_pred('Dmel_enzyme',11). -fb_pred('Dmel_enzyme_data',11). -fb_pred('Dmel_enzyme_data',7). -fb_pred('dmel_gene_sequence_ontology_annotations',4). -fb_pred('dmel_human_orthologs_disease',8). -fb_pred('dmel_paralogs',11). -fb_pred('dmel_unique_protein_isoforms',4). -fb_pred('entity_publication',3). -fb_pred('entity_publication',4). -fb_pred('fb_synonym',4). -fb_pred('fb_synonym',6). -fb_pred('fbal_to_fbgn',4). -fb_pred('fbgn_annotation_ID',4). -fb_pred('fbgn_annotation_ID',6). -fb_pred('fbgn_exons2affy1_overlaps',2). -fb_pred('fbgn_exons2affy2_overlaps',2). -fb_pred('fbgn_fbtr_fbpp',2). -fb_pred('fbgn_fbtr_fbpp',3). -fb_pred('fbgn_fbtr_fbpp_expanded',11). -fb_pred('fbgn_fbtr_fbpp_expanded',9). -fb_pred('fbgn_gleanr',4). -fb_pred('fbgn_NAseq_Uniprot',4). -fb_pred('fbgn_NAseq_Uniprot',9). -fb_pred('fbgn_uniprot',4). -fb_pred('fbrf_pmid_pmcid_doi',2). -fb_pred('fbrf_pmid_pmcid_doi',6). -fb_pred('fbrf_pmid_pmcid_doi',7). -fb_pred('gene_functional_complementation',5). -fb_pred('gene_genetic_interactions',6). -fb_pred('gene_group',7). -fb_pred('gene_group_data',2). -fb_pred('gene_group_data',7). -fb_pred('gene_groups_HGNC',2). -fb_pred('gene_groups_HGNC',3). -fb_pred('gene_groups_HGNC',4). -fb_pred('gene_map_table',5). -fb_pred('gene_map_table',6). -fb_pred('gene_rpkm_matrix',170). -fb_pred('gene_rpkm_report',12). -fb_pred('gene_snapshots',5). -fb_pred('genome_cyto_seq',3). -fb_pred('genome-cyto-seq',3). -fb_pred('genomic_clone',4). -fb_pred('genomic_clone_data',4). -fb_pred('genotype_phenotype',7). -fb_pred('genotype_phenotype_data',5). -fb_pred('genotype_phenotype_data',7). -fb_pred('gp_information',10). -fb_pred('gp_information',8). -fb_pred('id_type',2). -fb_pred('insertion_mapping',4). -fb_pred('insertion_mapping',7). -fb_pred('obo-adjacent-to',3). -fb_pred('obo-alt-id',2). -fb_pred('obo-arity',2). -fb_pred('obo-attached-to',3). -fb_pred('obo-attached-to-part-of',3). -fb_pred('obo-auto-generated-by',2). -fb_pred('obo-basename',2). -fb_pred('obo-broadMatch',2). -fb_pred('obo-charge',2). -fb_pred('obo-ChEBI-has-part',2). -fb_pred('obo-ChEBI-has-role',2). -fb_pred('obo-CL-capable-of',2). -fb_pred('obo-CL-capable-of-part-of',2). -fb_pred('obo-CL-has-part',2). -fb_pred('obo-closeMatch',2). -fb_pred('obo-comment',2). -fb_pred('obo-composed-primarily-of',3). -fb_pred('obo-conditionality',3). -fb_pred('obo-connected-to',3). -fb_pred('obo-consider',2). -fb_pred('obo-contains',3). -fb_pred('obo-continuous-with',3). -fb_pred('obo-created-by',2). -fb_pred('obo-creation-date',2). -fb_pred('obo-data-version',2). -fb_pred('obo-date',2). -fb_pred('obo-def',3). -fb_pred('obo-def',4). -fb_pred('obo-default-namespace',2). -fb_pred('obo-derives-from',3). -fb_pred('obo-develops-directly-from',3). -fb_pred('obo-develops-from',3). -fb_pred('obo-develops-from-part-of',3). -fb_pred('obo-develops-into',3). -fb_pred('obo-directory',2). -fb_pred('obo-disjoint-from',3). -fb_pred('obo-electrically-synapsed-to',3). -fb_pred('obo-exactMatch',2). -fb_pred('obo-fasciculates-with',3). -fb_pred('obo-FBcv-namespace',2). -fb_pred('obo-format-version',2). -fb_pred('obo-formula',2). -fb_pred('obo-GO-capable-of',2). -fb_pred('obo-GO-capable-of-part-of',2). -fb_pred('obo-GO-directly-negatively-regulates',2). -fb_pred('obo-GO-directly-positively-regulates',2). -fb_pred('obo-GO-directly-regulates',2). -fb_pred('obo-GO-has-part',2). -fb_pred('obo-GO-has-participant',2). -fb_pred('obo-GO-negatively-regulates',2). -fb_pred('obo-GO-occurs-in',2). -fb_pred('obo-GO-positively-regulates',2). -fb_pred('obo-GO-regulates',2). -fb_pred('obo-GO-results-in-formation-of',2). -fb_pred('obo-GO-results-in-growth-of',2). -fb_pred('obo-guided-by',3). -fb_pred('obo-has-definition',2). -fb_pred('obo-has-fasciculating-neuron-projection',3). -fb_pred('obo-has-functional-parent',2). -fb_pred('obo-has-name',2). -fb_pred('obo-has-origin',3). -fb_pred('obo-has-parent-hydride',2). -fb_pred('obo-has-part',2). -fb_pred('obo-has-part',3). -fb_pred('obo-has-quality',3). -fb_pred('obo-has-role',2). -fb_pred('obo-has-sensory-dendrite-in',3). -fb_pred('obo-has-soma-location',3). -fb_pred('obo-has-synaptic-IO-in',3). -fb_pred('obo-has-synaptic-IO-throughout',3). -fb_pred('obo-holds-over-chain',2). -fb_pred('obo-id-type',2). -fb_pred('obo-immediately-preceded-by',3). -fb_pred('obo-inchi',2). -fb_pred('obo-inchikey',2). -fb_pred('obo-Inheritance',2). -fb_pred('obo-innervated-by',3). -fb_pred('obo-innervates',3). -fb_pred('obo-intersection-of',4). -fb_pred('obo-inverse-of',2). -fb_pred('obo-inverse-of',3). -fb_pred('obo-is-a',2). -fb_pred('obo-is-class-level',2). -fb_pred('obo-is-conjugate-acid-of',2). -fb_pred('obo-is-conjugate-base-of',2). -fb_pred('obo-is-cyclic',2). -fb_pred('obo-is-enantiomer-of',2). -fb_pred('obo-is-functional',2). -fb_pred('obo-is-inverse-functional',2). -fb_pred('obo-is-metadata-tag',2). -fb_pred('obo-is-obsolete',2). -fb_pred('obo-is-substituent-group-from',2). -fb_pred('obo-is-symmetric',2). -fb_pred('obo-is-tautomer-of',2). -fb_pred('obo-is-transitive',2). -fb_pred('obo-mass',2). -fb_pred('obo-member-of',3). -fb_pred('obo-monoisotopicmass',2). -fb_pred('obo-name',2). -fb_pred('obo-namespace',2). -fb_pred('obo-namespace-id-rule',2). -fb_pred('obo-narrowMatch',2). -fb_pred('obo-negatively-regulates',3). -fb_pred('obo-non-functional-homolog-of',3). -fb_pred('obo-OBI:9991118',2). -fb_pred('obo-ontology',2). -fb_pred('obo-overlaps',3). -fb_pred('obo-owl:versionInfo',2). -fb_pred('obo-part-of',3). -fb_pred('obo-pathname',2). -fb_pred('obo-positively-regulates',3). -fb_pred('obo-property-value',2). -fb_pred('obo-property-value',3). -fb_pred('obo-receives-input-from',3). -fb_pred('obo-receives-synaptic-input-from-neuron',3). -fb_pred('obo-receives-synaptic-input-in-region',3). -fb_pred('obo-receives-synaptic-input-throughout',3). -fb_pred('obo-regulates',3). -fb_pred('obo-relatedMatch',2). -fb_pred('obo-remark',2). -fb_pred('obo-replaced-by',2). -fb_pred('obo-RO',4). -fb_pred('obo-saved-by',2). -fb_pred('obo-sends-synaptic-output-throughout',3). -fb_pred('obo-sends-synaptic-output-to-cell',3). -fb_pred('obo-sends-synaptic-output-to-region',3). -fb_pred('obo-smiles',2). -fb_pred('obo-subset',2). -fb_pred('obo-subsetdef',3). -fb_pred('obo-substage-of',3). -fb_pred('obo-synapsed-via-type-Ib-bouton-to',3). -fb_pred('obo-synapsed-via-type-II-bouton-to',3). -fb_pred('obo-synapsed-via-type-III-bouton-to',3). -fb_pred('obo-synapsed-via-type-Is-bouton-to',3). -fb_pred('obo-synonym',3). -fb_pred('obo-synonym',4). -fb_pred('obo-synonym',5). -fb_pred('obo-synonymtypedef',3). -fb_pred('obo-synonymtypedef',4). -fb_pred('obo-transcribed-from',3). -fb_pred('obo-transcribed-to',3). -fb_pred('obo-transitive-over',3). -fb_pred('obo-variant-of',3). -fb_pred('obo-xref',2). -fb_pred('obo-xref',3). -fb_pred('obo-xref',4). -fb_pred('obo-xref-analog',2). -fb_pred('organism_list',2). -fb_pred('organism_list',6). -fb_pred('pathname',2). -fb_pred('pathway_group',7). -fb_pred('pathway_group_data',2). -fb_pred('pathway_group_data',7). -fb_pred('physical_interactions_mitab',42). -fb_pred('pmid_fbgn_uniprot',5). -fb_pred('stocks',7). -fb_pred('stocks_FB2023_05',7). -fb_pred('synonym',6). -fb_pred('transposon_sequence_set',10). -fb_pred('transposon_sequence_set',11). -fb_pred('transposon_sequence_set',12). -fb_pred('transposon_sequence_set',13). -fb_pred('transposon_sequence_set',14). -fb_pred('transposon_sequence_set',15). -fb_pred('transposon_sequence_set',17). -fb_pred('transposon_sequence_set',18). -fb_pred('transposon_sequence_set',19). -fb_pred('transposon_sequence_set',20). -fb_pred('transposon_sequence_set',21). -fb_pred('transposon_sequence_set',22). -fb_pred('transposon_sequence_set',23). -fb_pred('transposon_sequence_set',25). -fb_pred('transposon_sequence_set',26). -fb_pred('transposon_sequence_set',27). -fb_pred('transposon_sequence_set',28). -fb_pred('transposon_sequence_set',29). -fb_pred('transposon_sequence_set',3). -fb_pred('transposon_sequence_set',30). -fb_pred('transposon_sequence_set',31). -fb_pred('transposon_sequence_set',32). -fb_pred('transposon_sequence_set',33). -fb_pred('transposon_sequence_set',34). -fb_pred('transposon_sequence_set',35). -fb_pred('transposon_sequence_set',36). -fb_pred('transposon_sequence_set',37). -fb_pred('transposon_sequence_set',38). -fb_pred('transposon_sequence_set',4). -fb_pred('transposon_sequence_set',40). -fb_pred('transposon_sequence_set',41). -fb_pred('transposon_sequence_set',42). -fb_pred('transposon_sequence_set',44). -fb_pred('transposon_sequence_set',45). -fb_pred('transposon_sequence_set',46). -fb_pred('transposon_sequence_set',47). -fb_pred('transposon_sequence_set',48). -fb_pred('transposon_sequence_set',49). -fb_pred('transposon_sequence_set',5). -fb_pred('transposon_sequence_set',50). -fb_pred('transposon_sequence_set',51). -fb_pred('transposon_sequence_set',52). -fb_pred('transposon_sequence_set',53). -fb_pred('transposon_sequence_set',54). -fb_pred('transposon_sequence_set',55). -fb_pred('transposon_sequence_set',56). -fb_pred('transposon_sequence_set',57). -fb_pred('transposon_sequence_set',58). -fb_pred('transposon_sequence_set',59). -fb_pred('transposon_sequence_set',60). -fb_pred('transposon_sequence_set',61). -fb_pred('transposon_sequence_set',62). -fb_pred('transposon_sequence_set',7). -fb_pred('transposon_sequence_set',8). -fb_pred('transposon_sequence_set',9). -% ============== -% METTA COMPILER -% ============== -%:- ensure_loaded(metta_compiler). -:- ensure_loaded(metta_interp). -%:- ensure_loaded(metta_python). - - - - -if_m2(G):- once(G). - -datalog_to_termlog(File):- atom_contains(File,'*'),expand_file_name(File,List),!,maplist(datalog_to_termlog,List). -datalog_to_termlog(File):- - nb_setval(src_indents,'False'), - atom_concat(File,'2',File2), - fbug(datalog_to_termlog(File)), - if_m2(atom_concat(File,'.metta',M)), - setup_call_cleanup((open(File,read,In), open(File2,write,Out), if_m2(open(M,write,OutM))), - (repeat, - read_term(In,Term,[]), - (Term==end_of_file -> ! ; (process_datalog(Out,OutM,Term),fail))), - ((close(In),close(Out),if_m2(close(OutM)),listing(fb_pred/2)))). - - -process_datalog(Out,OutM,Term):- - Term=..[F|Args], - process_datalog(Out,OutM,F,Args). - - -process_datalog(Out,OutM,F,Args):- - must_det_ll((maplist(better_arg,Args,ArgsL), - Src=[F|ArgsL],OBO=..Src, - length(ArgsL,N), - assert_if_new(fb_pred(F,N)), - write_canonical(Out,OBO),!,writeln(Out,'.'), - if_m2((with_output_to(OutM,write_srcH(Src)))))). - - - % Split a string or atom by a specified delimiter. -split_by_delimiter(Input, Delimiter, Parts) :- - atomic_list_concat(Parts, Delimiter, Input), - Parts = [_,_|_]. % Ensure that there's more than one part. - -always_delistify(A,A):- \+ compound(A),!. -always_delistify(s(A,M,E),s(A,MM,E)):- !, always_delistify(M,MM). -always_delistify(A,A):- \+ is_list(A),!. -always_delistify([A],A):-!. -always_delistify(A,A). - -better_arg(S,A):- string(S),atom_string(A,S),!. -%better_arg1(A,B):- fix_concept(A,B),!. -better_arg(A,A):- !. - -better_arg(A,B):- better_arg1(A,AA),always_delistify(AA,B). -% Main predicate to try different delimiters. -better_arg1(Input,s(A,Mid,E)) :- fail, (string(Input);atom(Input)), - once(to_case_breaks(Input,CB)), CB=[_,_,_|_], once(cb_better_args(CB,[A|ABCParts])), - ABCParts=[_,_|_], append(Mid,[E],ABCParts),!. -better_arg1(S,A):- string(S),atom_string(A,S),!. -%better_arg1(A,B):- fix_concept(A,B),!. -better_arg1(A,A). - -is_FB_input([xti(_, upper), xti(":", punct), xti(_, digit)]):-!. -is_FB_input([xti("FB", upper), xti(_,lower), xti(_, digit)]):-!. -cb_better_args([_],_):-!,fail. -cb_better_args(X,_):- is_FB_input(X),!,fail. -cb_better_args(CB,Parts):-cb_better_args_ni(CB,Parts),!. -cb_better_args_ni([A,B,C|L],[I|Parts]):- is_FB_input([A,B,C]),maplist(arg(1),[A,B,C],ABC),atomic_list_concat(ABC,I),cb_better_args_ni(L,Parts). -cb_better_args_ni([XTI|L],[I|Parts]):-arg(1,XTI,S),!,atom_string(I,S),cb_better_args_ni(L,Parts). -cb_better_args_ni([],[]):-!. -datalog_to_termlog:- - datalog_to_termlog('./data/*/*.datalog'), - datalog_to_termlog('./data/*/*/*.datalog'), - datalog_to_termlog('./data/*/*/*/*.datalog'), - datalog_to_termlog('./data/*/*/*/*/*.datalog'), - datalog_to_termlog('./data/*/*/*/*/*/*.datalog'), - datalog_to_termlog('./data/*/*/*/*/*/*/*.datalog'). - -%datalog_to_termlog:- datalog_to_termlog('whole_flybase.datalog'). - diff --git a/metta_vspace/pyswip_lng/flybase_main.pl b/metta_vspace/pyswip_lng/flybase_main.pl new file mode 120000 index 00000000..b7b4fca4 --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_main.pl @@ -0,0 +1 @@ +../pyswip/flybase_main.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_obo.pl b/metta_vspace/pyswip_lng/flybase_obo.pl deleted file mode 100755 index 8882e054..00000000 --- a/metta_vspace/pyswip_lng/flybase_obo.pl +++ /dev/null @@ -1,294 +0,0 @@ -% =========================================== -% BEGIN OBO Loader -% - Douglas R. Miles 2023 -% =========================================== - -% requires: assert_MeTTa/1, track_load_into_file/2 - -:- use_module(library(logicmoo_utils)). -:- ensure_loaded(flybase_main). - -assert_OBO(P,X,Y):- assert_OBO(ontology_info(P,X,Y)). - -% Main entry point -load_obo(Filename) :- \+ atomic(Filename), - absolute_file_name(Filename,X,[read(exists),extension(['']),file_type(directory), - file_errors(fail),solutions(first)]), !, load_obo(X). -load_obo(Filename) :- \+ atomic(Filename), !, - absolute_file_name(Filename,X,[read(exists),extension(['']), file_errors(fail),solutions(first)]), !, load_obo(X). -load_obo(Filename) :- - atomic(Filename), \+ exists_file(Filename), expand_file_name(Filename,List), - List\==[], List\==[Filename], - maplist(load_obo,List). -load_obo(Directory) :- - atomic(Directory), exists_directory(Directory), - directory_file_path(Directory, "*.obo", Filename), - expand_file_name(Filename,List),!,maplist(load_obo,List). -load_obo(Filename) :- fail, - process_obo_file(Filename),!. -load_obo(Filename) :- - process_obo_direct(Filename),!. - - -process_obo_file(File):- atom_concat(File,'.metta_x',MXFile),process_obo_file(File,MXFile). -process_obo_file(_File,MXFile):- exists_file(MXFile),!,process_metta_x_file(MXFile). -process_obo_file(File, MXFile):- exists_file(File),!, - setup_call_cleanup( - open(MXFile,write,Strm,[]), - setup_call_cleanup( - set_stream(Strm,alias(metta_x_output)), - with_option(make_metta_x,'False', - process_obo_direct(File)), - set_stream(current_output,alias(metta_x_output))), - close(Strm)), - remove_duplicates(MXFile), - process_metta_x_file(MXFile). -process_obo_file(File, MXFile):- throw(process_obo_file(File, MXFile)). - - - -% remove_duplicates(+InputFile) - removes duplicate lines from a file in place. -remove_duplicates(InputFile) :- - % Create a temporary output file - format(atom(OutputFile), '~w.tmp', [InputFile]), - % Build the command to remove duplicates and output to the temporary file - format(atom(Command), 'sort ~w | uniq > ~w', [InputFile, OutputFile]), - % Execute the command - shell(Command, ExitStatus), - % Check the exit status - ExitStatus =:= 0, - % Move the temporary output file to the original input file - format(atom(Command2), 'mv ~w ~w', [OutputFile, InputFile]), - shell(Command2, ExitStatus2), - ExitStatus2 =:= 0,!. - -% rename_file(+Source, +Destination) - renames or moves a file. -%rename_file(Source, Destination) :- - % rename(Source, Destination). - -process_obo_direct(Filename):- - directory_file_path(Directory, BaseName, Filename), - file_name_extension(Id, _, BaseName), - symbol_concat(Id,'.metta',OutputFile), - nop(tell(OutputFile)), - track_load_into_file(Filename, - must_det_ll(( - Type = 'OntologyFile', - assert_OBO(id_type,Id,Type), - nb_setval(obo_id,Id),nb_setval(obo_type,Type), - assert_OBO('pathname',Id,Filename),!, - assert_OBO('basename',Id,BaseName),!, - assert_OBO('directory',Id,Directory),!, - setup_call_cleanup(open(Filename, read, Stream, [encoding(utf8)]), - process_obo_stream_repeat(Stream), - close(Stream))))), - nop(told). - - -process_obo_stream_repeat(Stream):- - repeat, - nb_current(obo_type,Type), - nb_current(obo_id, Id), - once((read_line_to_string(Stream, Line), - ((should_show_data(_),fail) -> writeln(Line); true), - normalize_space(chars(Chars),Line))), - Chars\==[], - once(process_obo_chars( Type, Chars, Id)), - ((at_end_of_stream(Stream);reached_file_max) -> ! ; fail). - - -process_obo_stream(Stream,_Type,_Id) :- (at_end_of_stream(Stream);reached_file_max),!. -process_obo_stream(Stream, Type, Id) :- - must_det_ll(( - read_line_to_string(Stream, Line), %writeln(Line), - normalize_space(chars(Chars),Line), - process_obo_chars( Type, Chars, Id))). - - -into_rest(Rest,RestChars,RestStr):- - obo_string(Str,Rest), - normalize_space(chars(RestChars),Str), - obo_string(RestStr,RestChars). - -obo_string(String,[C|Chars]):- var(String), C==' ',!, obo_string(String,Chars). -obo_string(String,Chars):- string_chars(String,Chars). - -process_obo_chars( _, [e,n,d,'_',o,f,'_',f,i,l,e], _):-!. -process_obo_chars( _, [], _) :- !. - -process_obo_chars( _, ['['|Chars], _):- append(Left,[']'],Chars),!, - must_det_ll(( symbol_chars(Type,Left),!, nb_setval(obo_type,Type))). - -process_obo_chars( Type, Chars, _):- - get_key(Key,Chars,Rest),Key == id, - into_rest(Rest,RestChars,_RestStr), - symbol_chars(Id,RestChars), assert_OBO(id_type,Id,Type), - nb_setval(obo_id,Id),nb_setval(obo_type,Type). - -process_obo_chars( Type, Chars, Id):- - must_det_ll(( - get_key(Key,Chars,Rest), - into_rest(Rest,RestChars,RestStr), - process_obo_rest_line(Type,Id,Key,RestChars,RestStr))),!. - -process_obo_rest_line(Type,Id,Reln,Rest,_):- Reln = id, - get_some_items([item(Id)],Rest,[]),!, assert_OBO(id_type,Id,Type),!. -process_obo_rest_line(_Type,Id,Ref,_Chars,S):- - member(Ref,[name,comment]), - assert_OBO(Ref,Id,S),!. - -process_obo_rest_line(Type,Id,Reln,Chars,_):- Reln = relationship,!, - must_det_ll(( - key_like_string(KeyLike,Chars,Rest), - symbol_chars(Key,KeyLike), - into_rest(Rest,RestChars,RestStr), - process_obo_rest_line(Type,Id,Key,RestChars,RestStr))). - -process_obo_rest_line(_Type,Id,Ref,Chars,_):- - \+ (member(C,Chars),member(C,['!','[','"'])), - ( \+ member(' ',Chars)-> symbol_chars(S,Chars);obo_string(S,Chars)), - assert_OBO(Ref,Id,S),!. - -process_obo_rest_line(_Type,Id,is_a,Chars,Str):- - member('!',Chars), atomic_list_concat([L,R],' ! ',Str), - normalize_space(atom(T),L),normalize_space(string(N),R), - assert_OBO(is_a,Id,T), assert_OBO(name,T,N),!. - -process_obo_rest_line(_Type,Id,Reln,Chars,_):- - % member(Reln,[synonym]), - get_some_items(List,Chars,[]), - maplist(fix_obo_arg,List,Args), - Assert=..[Reln,Id|Args], - assert_OBO(Assert),!. - -%process_obo_rest_line(_Type,Id,Reln,Chars,_):- get_some_items(List,Chars,[]), maplist(arg(1),List,Args), assert_OBO(Reln,Id,Args). -process_obo_rest_line(Type,Id,Miss,Rest,Str):- - pp_fb('ERROR'(process_obo_rest_line(Type,Id,Miss,Rest,Str))),!. - -fix_obo_arg(Var,Var):- var(Var),!. -fix_obo_arg("[]",[]):- !. -fix_obo_arg('[]',[]):- !. -fix_obo_arg(X,Y):- string(X),!,normalize_space(string(Y),X). -fix_obo_arg(X,Y):- atom(X),!,normalize_space(atom(Y),X). -fix_obo_arg(X,Y):- compound(X),arg(1,X,XX),!,fix_obo_arg(XX,Y). - -fix_obo_arg(X,X). - -/* -Given the DCG rules we've defined, the input - -``` OBO - -[Term] -id: FBcv:0000391 -name: bang sensitive -namespace: phenotypic_class -def: "A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis." [FlyBase:FBrf0022877] -synonym: "easily shocked" RELATED [FlyBase:FBrf0022877] -is_a: FBcv:0000389 ! paralytic - -``` -Would be parsed into the following Prolog terms: -``` -[ - bracketed(['Term']), - key('id'), item('FBcv:0000391'), - key('name'), item('bang sensitive'), - key('namespace'), item('phenotypic_class'), - key('def'), quoted("A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis."), bracketed(['FlyBase:FBrf0022877']), - key('synonym'), quoted("easily shocked"), keyword('RELATED'), bracketed(['FlyBase:FBrf0022877']), - key('is_a'), item('FBcv:0000389'), named('paralytic') -] -``` - -*/ - - -get_key(Key)-->key_like_string(Chars),[':'],{symbol_chars(Key,Chars)},!. -get_some_items(I)--> [' '],!,get_some_items(I). -get_some_items(_,[],[]):-!. -get_some_items([H|T])-->get_one_item(H),get_some_items(T). get_some_items([])-->[]. -get_one_item(I)--> [' '],!,get_one_item(I). -get_one_item(quoted(Item))-->[x,s,d,':'],symbol_or_url(Chars),{symbol_chars(Item,[x,s,d,':'|Chars])}. -get_one_item(quoted(Item))-->[h,t,t,p],symbol_or_url(Chars),{obo_string(Item,[h,t,t,p|Chars])}. -get_one_item(quoted(Item))-->[f,t,p],symbol_or_url(Chars),{obo_string(Item,[f,t,p|Chars])}. -get_one_item(quoted(Item))-->['"'],string_until_end_quote(Chars),{obo_string(Item,Chars)}. -get_one_item(named(Item))-->['!'],whs,named_like_string(Chars),{symbol_chars(Item,Chars)}. -get_one_item(bracketed(Items))-->['['],whs,items(Items),whs,[']']. -get_one_item(bracketed(Items))-->['{'],whs,items(Items),whs,['}']. -%get_one_item(item(Item))--> whs,key_like_string(Chars),whs,{Chars \==[], symbol_chars(Item,Chars)}. -get_one_item(keyword(Keyword))-->whs,id_like_string(Chars),{Chars\==[]},whs,{symbol_chars(Keyword,Chars)}. -get_one_item(text(Text))-->named_like_string(Chars),{obo_string(Text,Chars)}. -get_one_item(text(Text),[H|T],[]):- ground([H|T]),obo_string(Text,[H|T]),!. -items([Item|Rest])-->item(Item),whs,[','],whs,items(Rest). -items([Item])-->item(Item),!. -item(Item)-->symbol_or_url(Chars),{Chars\==[],symbol_chars(Item,Chars)}. -key_like_string([H|T])-->[H],{\+member(H,[':',' ','\t','\n'])},key_like_string(T). -key_like_string([])-->[]. -id_like_string([H|T])-->[H],{\+member(H,['!',' ','\t','\n',',','[',']','{','}','"'])},id_like_string(T). -id_like_string([])-->[]. -symbol_or_url([H|T])-->[H],{\+member(H,[',','[',']','"',' '])},symbol_or_url(T). -symbol_or_url([])-->[]. -string_until_end_quote([])-->['"'],!. -string_until_end_quote([H|T])-->(['\\',H];[H]),!,string_until_end_quote(T). -named_like_string([H|T])-->[H],{\+member(H,['\n'])},named_like_string(T). -named_like_string([])-->[]. -whs-->[''],!,whs. whs-->[]. - -% =========================================== -% END OBO Loader -% =========================================== - -assert_OBO(property_value(Term, URI, V, 'xsd:string')):- assert_OBO(property_value(Term, URI, V)). -assert_OBO(property_value(Term, URI, V)):- simplify_obo_arg(URI,Pred),!,assert_OBO(property_value(Term, Pred, V)). -assert_OBO(property_value(Term, Pred, V)):- simplify_obo_arg(V,VV),!,assert_OBO(property_value(Term, Pred, VV)). -assert_OBO(property_value(Term, Pred, V)):- atom(Pred),!,OBO=..[Pred,Term,V],assert_OBO(OBO). -assert_OBO(synonym(Pred,A,Term,V)):- simplify_obo_arg(V,VV),!,assert_OBO(synonym(Pred,A,Term,VV)). -assert_OBO(ontology_info(Pred,Term,V)):- assert_OBO(property_value(Term, Pred, V)). -assert_OBO([F|List]):- is_list([F|List]),atom(F),OBO=..[F|List],!,assert_OBO(OBO). -assert_OBO(OBO):- - must_det_ll(( - OBO=..[Fn|Cols], - into_obofn(Fn,OboFn), - assert_OB1([OboFn|Cols]))). - -assert_OB1(List):- nb_current(make_metta_x,'True'),!, assert_OB2(List). -assert_OB1([OboFn|Cols]):- - OBO1=..[OboFn|Cols], - assert_to_metta(OBO1). - -assert_OB2(List):- maplist(to_metta_x_args,List,ListO), - atomics_to_string(ListO,'\t',Str), - writeln(metta_x_output,Str). - -to_metta_x_args(X,O):- X==[],!,O='[]'. -to_metta_x_args(X,O):- atomic(X),!,O=X. -to_metta_x_args(X,O):- term_to_atom(X,O). - -args_x_metta(X,O):- X=='[]',!,O=[]. -args_x_metta(X,O):- atomic(X),atom_concat('?-',Read,X),!,atom_to_term(Read,O,_). -args_x_metta(X,O):- X=O. -/* - OBOW=..[OboFn|Cols], - (is_converting -> (format('~N'), write_src(OBOW));(OBO1=..OBOW,assert_MeTTa(OBO1))))), - !. -*/ - -into_obofn(Fn,OboFn):- atom_concat('obo-',_,Fn),!,Fn=OboFn,!. -into_obofn(Fn,OboFn):- atom_concat('obo-',Fn,OboF_),!,use_dashes(OboF_,OboFn). - - -use_dashes(OboF_,OboFn):- - atomic_list_concat(List,'_',OboF_), - atomic_list_concat(List,'-',OboFn),!. - - -simplify_obo_arg(I,_O):- \+ string(I), \+ atom(I),!,fail. -simplify_obo_arg([],_O):- !, fail. -simplify_obo_arg("[]",[]):-!. -simplify_obo_arg(I,O):- atom_concat('http://purl.obolibrary.org/obo/chebi/',O,I),!. -simplify_obo_arg(I,O):- atom_concat(' ',O,I),!. -simplify_obo_arg(I,O):- atom_concat(O,' ',I),!. -simplify_obo_arg(I,O):- atom_number(I,O),!. - - diff --git a/metta_vspace/pyswip_lng/flybase_obo.pl b/metta_vspace/pyswip_lng/flybase_obo.pl new file mode 120000 index 00000000..175c093d --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_obo.pl @@ -0,0 +1 @@ +../pyswip/flybase_obo.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/flybase_scheme.pl b/metta_vspace/pyswip_lng/flybase_scheme.pl deleted file mode 100755 index 24c261a3..00000000 --- a/metta_vspace/pyswip_lng/flybase_scheme.pl +++ /dev/null @@ -1,2716 +0,0 @@ -'information_schema.columns'(flybase,pg_catalog,pg_stat_database,temp_bytes,15,'','YES',bigint,'','',64,2,0,'','','','','','','','','','','','',flybase,pg_catalog,int8,'','','','',15,'NO','NO','','','','','','NO','NEVER','','NO'). 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a/metta_vspace/pyswip_lng/flybase_scheme.pl b/metta_vspace/pyswip_lng/flybase_scheme.pl new file mode 120000 index 00000000..91cd7789 --- /dev/null +++ b/metta_vspace/pyswip_lng/flybase_scheme.pl @@ -0,0 +1 @@ +../pyswip/flybase_scheme.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_compiler.pl b/metta_vspace/pyswip_lng/metta_compiler.pl deleted file mode 100755 index 30b7bb8a..00000000 --- a/metta_vspace/pyswip_lng/metta_compiler.pl +++ /dev/null @@ -1,1195 +0,0 @@ -% ============================== -% Prolog to MeTTa transpilation (which uses the Host SWI-Prolog compiler) -% This Prolog code block is mainly aimed at compiling/optimizing and transforming -% Prolog predicates to functional equivalents and vice versa, with special attention -% to handling different logical constructs and performing conversions between -% functions and predicates. -% ============================== - -% Setting the file encoding to ISO-Latin-1 -:- encoding(iso_latin_1). -% Flushing the current output -:- flush_output. -% Setting the Rust backtrace to Full -:- setenv('RUST_BACKTRACE',full). -% Loading various library files -:- ensure_loaded(swi_support). -:- ensure_loaded(metta_testing). -:- ensure_loaded(metta_utils). -:- ensure_loaded(metta_reader). -:- ensure_loaded(metta_interp). -:- ensure_loaded(metta_space). -% ======================================= -% TODO move non flybase specific code between here and the compiler -:- ensure_loaded(flybase_main). -% ======================================= -%:- set_option_value(encoding,utf8). - -% Meta-predicate that ensures that for every instance where G1 holds, G2 also holds. -:- meta_predicate(for_all(0,0)). -for_all(G1,G2):- forall(G1,G2). - -:- op(700,xfx,'=~'). - -compound_non_cons(B):- compound(B), \+ B = [_|_]. -iz_conz(B):- compound(B), B=[_|_]. - -'=~'(A,B):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). -'=~'(B,A):- compound_non_cons(B),!,into_list_args(B,BB),!,'=~'(A,BB). -'=~'(A,B):- iz_conz(A),iz_conz(B),!,A=B. -'=~'(A,B):- var(A),iz_conz(B),!,A=B. -'=~'(A,B):- iz_conz(A),var(B),!,A=B. -'=~'(A,B):- compound_non_cons(A),var(B),!,A=..B. -'=~'(A,B):- compound_non_cons(B),!,A=B. -'=~'(A,B):- '=..'(A,B). - -%into_list_args(A,AA):- is_ftVar(A),AA=A. -%into_list_args(C,[C]):- \+ compound(C),!. -into_list_args(C,C):- \+ compound(C),!. -into_list_args(A,AA):- is_ftVar(A),AA=A. -into_list_args([H|T],[H|T]):- \+ is_list(T),!. -into_list_args([H,List,A],HT):- H == u_assign,!,append(List,[A],HT),!. -into_list_args([H|T],[H|T]):- is_list(T),!. -into_list_args(u_assign(List, A),[H|T]):- append(List,[A],[H|T]),!. -into_list_args(holds(A),AA):- !, into_list_args(A,AA),!. -into_list_args(C,FArgs):- compound_name_arguments(C,F,Args),!,into_list_args([F|Args],FArgs). - - - -compound_name_list(AsPred,FP,PredArgs):- var(AsPred),!,AsPred=[FP|PredArgs]. -compound_name_list(AsPred,FP,PredArgs):- iz_conz(AsPred),!,AsPred=[FP|PredArgs]. -compound_name_list(AsPred,FP,PredArgs):- into_list_args(AsPred,[FP|PredArgs]),!. -compound_name_list(AsPred,FP,PredArgs):- compound_non_cons(AsPred),!,compound_name_arguments(AsPred,FP,PredArgs). -% =============================== -% COMPILER / OPTIMIZER -% Scryer Compiler vs PySWIP ASM Compiler -% -% PySWIP is 222 times faster per join -% =============================== - - -% Conversion is possible between a function and a predicate of arity when the result is at the nth arg -:- dynamic decl_functional_predicate_arg/3. - -% Converion is possible between a function and predicate is tricky -functional_predicate_arg_tricky(is, 2, 1). % E.g. eval(is(+(1,2)),Result) converts to is(Result,+(1,2)). -% Defining standard mappings for some common functions/predicates -decl_functional_predicate_arg(append, 3, 3). -decl_functional_predicate_arg(+, 3, 3). -decl_functional_predicate_arg(pi, 1, 1). -decl_functional_predicate_arg('Empty', 1, 1). -decl_functional_predicate_arg(call,4,4). -decl_functional_predicate_arg(eval, 2, 2). -decl_functional_predicate_arg(edge, 2, 2). -decl_functional_predicate_arg('==', 2, 2). -decl_functional_predicate_arg('is-same', 2, 2). -decl_functional_predicate_arg(assertTrue, 2, 2). -decl_functional_predicate_arg(case, 3, 3). -decl_functional_predicate_arg(assertFalse, 2, 2). -decl_functional_predicate_arg(match,4,4). -decl_functional_predicate_arg('TupleConcat',3,3). -decl_functional_predicate_arg('new-space',1,1). - -decl_functional_predicate_arg(superpose, 2, 2). - -do_predicate_function_canonical(F,FF):- predicate_function_canonical(F,FF),!. -do_predicate_function_canonical(F,F). -predicate_function_canonical(is_Empty,'Empty'). - -% Mapping any current predicate F/A to a function, if it's not tricky -functional_predicate_arg(F, A, L):- decl_functional_predicate_arg(F, A, L). -functional_predicate_arg(F, A, L):- (atom(F)->true;trace), predicate_arity(F,A), - \+ functional_predicate_arg_tricky(F,A,_), L=A, - \+ decl_functional_predicate_arg(F, A, _). -functional_predicate_arg(F, A, L):- functional_predicate_arg_tricky(F, A, L). - -predicate_arity(F,A):- metta_atom('&self',[:,F,[->|Args]]), length(Args,A). -predicate_arity(F,A):- current_predicate(F/A). -% Certain constructs should not be converted to functions. -not_function(P):- atom(P),!,not_function(P,0). -not_function(P):- callable(P),!,functor(P,F,A),not_function(F,A). -not_function(F,A):- is_arity_0(F,FF),!,not_function(FF,A). -not_function(!,0). -not_function(print,1). -not_function((':-'),2). -not_function((','),2). -not_function((';'),2). -not_function(('='),2). -not_function(('or'),2). - -not_function('a',0). -not_function('b',0). -not_function(F,A):- is_control_structure(F,A). -not_function(A,0):- atom(A),!. -not_function('True',0). -not_function(F,A):- predicate_arity(F,A),AA is A+1, \+ decl_functional_predicate_arg(F,AA,_). - -needs_call_fr(P):- is_function(P,_Nth),functor(P,F,A),AA is A+1, \+ current_predicate(F/AA). - -is_control_structure(F,A):- atom(F), atom_concat('if-',_,F),A>2. - -'=='(A, B, Res):- as_tf(equal_enough(A, B),Res). -'or'(G1,G2):- once((G1 ; G2)). -'or'(G1,G2,Res):- as_tf((G1 ; G2),Res). - -% Function without arguments can be converted directly. -is_arity_0(AsFunction,F):- compound(AsFunction), compound_name_arity(AsFunction,F,0). - -% Determines whether a given term is a function and retrieves the position -% in the predicate where the function Result is stored/retrieved -is_function(AsFunction, _):- is_ftVar(AsFunction),!,fail. -is_function(AsFunction, _):- AsFunction=='$VAR',!, trace, fail. -is_function(AsFunction, Nth) :- is_arity_0(AsFunction,F), \+ not_function(F,0), !,Nth=1. -is_function(AsFunction, Nth) :- is_arity_0(AsFunction,_), !,Nth=1. -is_function(AsFunction, Nth) :- - callable(AsFunction), - functor(AsFunction, Functor, A), - \+ not_function(Functor, A), - AA is A + 1, - functional_predicate_arg_maybe(Functor, AA, Nth). - -functional_predicate_arg_maybe(F, AA, Nth):- functional_predicate_arg(F, AA, Nth),!. -functional_predicate_arg_maybe(F, AA, _):- A is AA - 1,functional_predicate_arg(F,A,_),!,fail. -functional_predicate_arg_maybe(F, Nth, Nth):- asserta(decl_functional_predicate_arg(F, Nth, Nth)),!. - -% -------------------------------- -% FUNCTS_TO_PREDS EXPLANATION -% -------------------------------- - -% functs_to_preds is a predicate that converts all Term functions to their equivalent predicates. -% It takes three arguments - RetResult, which will hold the result of the function evaluation, -% Convert, which is the function that needs to be converted, and Converted, which will hold the equivalent predicate. -% Example: -% -% ?- functs_to_preds(RetResult, is(pi+pi), Converted). -% -% Converted = (pi(_A), -% +(_A, _A, _B), -% _C is _B, -% eval(_C, RetResult)). -% - -functs_to_preds([Eq,H,B],OO):- Eq == '=', compile_for_assert(H, B, OO),!. -functs_to_preds(EqHB,OO):- compile_head_for_assert(EqHB,OO),!. - -functs_to_preds(I,OO):- - sexpr_s2p(I, M), - /*trace,*/ - f2p(_,_,M,O), - expand_to_hb(O,H,B), - head_preconds_into_body(H,B,HH,BB), - OO = (HH:-BB). - - -% ?- compile_for_exec(RetResult, is(pi+pi), Converted). -compile_for_exec(Res,I,BB):- - HeadIs = [exec], - AsBodyFn = I, - compile_for_assert(HeadIs, AsBodyFn, Converted), - (Converted = (exec(Res):- BB)),!, - (portray_clause((Converted))),!. - - -compile_for_exec(Res,I,BB):- - =(I, M), - f2p(exec(),_,(exec()=M),O), - expand_to_hb(O,H,B), - head_preconds_into_body(H,B,HH,BB), - ignore(exec(Res)=HH), - (portray_clause((exec2(Res):- BB))),!. - -compile_for_exec(Res,I,O):- - =(I, M), f2p(exec(),Res,M,O), - (portray_clause((exec1(Res):- O))),!. - - -% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. -compile_head_for_assert(HeadIs, (Head:-Body)):- - compile_head_for_assert(HeadIs, NewHeadIs,Converted), - head_preconds_into_body(NewHeadIs,Converted,Head,Body). - -compile_head_for_assert(HeadIs, NewHeadIs,Converted) :- /*trace,*/ - as_functor_args(HeadIs,F,A,ArgsL), - maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), - as_functor_args(NewHeadIs,F,A,NewArgs), - list_to_conjuncts(CodeForValueL,Converted),!. - - -as_functor_args(AsPred,F,A,ArgsL):- nonvar(AsPred),!,into_list_args(AsPred,[F|ArgsL]),length(ArgsL,A). -as_functor_args(AsPred,F,A,ArgsL):- nonvar(F),length(ArgsL,A),AsPred =~ [F|ArgsL]. - -compile_for_assert(HeadIs, AsBodyFn, Converted) :- - (AsBodyFn =@= HeadIs ; AsBodyFn == []), !,/*trace,*/ - compile_head_for_assert(HeadIs,Converted). - -compile_for_assert(HeadIs, AsBodyFn, Converted) :- is_ftVar(AsBodyFn), /*trace,*/ - AsFunction = HeadIs,!, - must_det_ll(( - Converted = (HeadC :- BodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn - %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), - f2p(HeadIs,HResult,AsFunction,HHead), - (var(HResult) -> (Result = HResult, HHead = Head) ; - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), - NextBody = u_assign(AsBodyFn,Result), - head_preconds_into_body(Head,NextBody,HeadC,BodyC), - nop(ignore(Result = '$VAR'('HeadRes'))))),!. - -compile_for_assert(HeadIs, AsBodyFn, Converted) :- - AsFunction = HeadIs, - must_det_ll(( - Converted = (HeadC :- NextBodyC), % Create a rule with Head as the converted AsFunction and NextBody as the converted AsBodyFn - %funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), - f2p(HeadIs,HResult,AsFunction,HHead), - (var(HResult) -> (Result = HResult, HHead = Head) ; - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head)), - verbose_unify(Convert), - f2p(HeadIs,Result,AsBodyFn,NextBody), - %RetResult = Converted, - %RetResult = _, - head_preconds_into_body(Head,NextBody,HeadC,NextBodyC), - fbug([convert(Convert),head_preconds_into_body(HeadC:-NextBodyC)]), - %if_t(((Head:-NextBody)\=@=(HeadC:-NextBodyC)),fbug(was(Head:-NextBody))), - - nop(ignore(Result = '$VAR'('HeadRes'))))),!. - -% If Convert is of the form (AsFunction=AsBodyFn), we perform conversion to obtain the equivalent predicate. -compile_for_assert(HeadIs, AsBodyFn, Converted) :- - AsFunction = HeadIs, Converted = (HeadCC :- BodyCC), - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, _Nth, Head), - as_functor_args(Head,F,A,ArgsL), - maplist(f2p_assign(HeadIs),NewArgs,ArgsL,CodeForValueL), - as_functor_args(HeadC,F,A,NewArgs), - list_to_conjuncts(CodeForValueL,CodeForHeadArgs), - f2p(HeadIs,Result,AsBodyFn,NextBody), - combine_code(CodeForHeadArgs,NextBody,BodyC),!, - head_preconds_into_body(HeadC,BodyC,HeadCC,BodyCC),!. - - -/* -*/ - -head_preconds_into_body(Head,Body,Head,Body):- \+ compound(Head),!. -head_preconds_into_body((PreHead,True),Converted,Head,Body):- True==true,!, - head_preconds_into_body(PreHead,Converted,Head,Body). -head_preconds_into_body((True,PreHead),Converted,Head,Body):- True==true,!, - head_preconds_into_body(PreHead,Converted,Head,Body). -head_preconds_into_body(PreHead,(True,Converted),Head,Body):- True==true,!, - head_preconds_into_body(PreHead,Converted,Head,Body). -head_preconds_into_body(PreHead,(Converted,True),Head,Body):- True==true,!, - head_preconds_into_body(PreHead,Converted,Head,Body). -head_preconds_into_body((AsPredO,Pre),Converted,Head,Body):- - head_preconds_into_body(Pre,(AsPredO,Converted),Head,Body). -head_preconds_into_body(AHead,Body,Head,BodyNew):- - assertable_head(AHead,Head), - optimize_body(Head,Body,BodyNew). - -assertable_head(u_assign(FList,R),Head):- FList =~ [F|List], - append(List,[R],NewArgs), atom(F),!, Head=..[F|NewArgs]. -assertable_head(Head,Head). - -optimize_body(_Head,Body,BodyNew):- var(Body),!,Body=BodyNew. -optimize_body(Head,(B1*->B2;B3),(BN1*->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). -optimize_body(Head,(B1->B2;B3),(BN1->BN2;BN3)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2), optimize_body(Head,B3,BN3). -optimize_body(Head,(B1,B2),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). -optimize_body(Head,(B2,B1),(BN1)):- B2==true,!, optimize_body(Head,B1,BN1). -optimize_body(Head,(B1,B2),(BN1,BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). -optimize_body(Head,(B1:-B2),(BN1:-BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). -optimize_body(Head,(B1;B2),(BN1;BN2)):-!, optimize_body(Head,B1,BN1), optimize_body(Head,B2,BN2). -optimize_body(_Head,Body,BodyNew):- Body=BodyNew. - - -compile_test_then_else(RetResult,If,Then,Else,Converted):- - f2p(HeadIs,ThenResult,Then,ThenCode), - f2p(HeadIs,ElseResult,Else,ElseCode), - Converted=(If*->(ThenCode,ThenResult=RetResult);(ElseCode,ElseResult=RetResult)). - -:- discontiguous(compile_flow_control/4). - -compile_flow_control(_HeadIs,_RetResult,Convert,_):- \+ compound(Convert),!,fail. -compile_flow_control(_HeadIs,_RetResult,Convert,_):- compound_name_arity(Convert,_,0),!,fail. -compile_flow_control(HeadIs,RetResult,Convert, (Code1,Eval1Result=Result,Converted)) :- % dif_functors(HeadIs,Convert), - Convert =~ chain(Eval1,Result,Eval2),!, - f2p(HeadIs,Eval1Result,Eval1,Code1), - f2p(HeadIs,RetResult,Eval2,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ if(Cond,Then,Else),!,Test = is_True(CondResult), - f2p(HeadIs,CondResult,Cond,CondCode), - compile_test_then_else(RetResult,(CondCode,Test),Then,Else,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ 'if-error'(Value,Then,Else),!,Test = is_Error(ValueResult), - f2p(HeadIs,ValueResult,Value,ValueCode), - compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ 'if-empty'(Value,Then,Else),!,Test = is_Empty(ValueResult), - f2p(HeadIs,ValueResult,Value,ValueCode), - compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - (Convert =~ 'if-non-empty-expression'(Value,Then,Else)),!, - (Test = ( \+ is_Empty(ValueResult))), - f2p(HeadIs,ValueResult,Value,ValueCode), - compile_test_then_else(RetResult,(ValueCode,Test),Then,Else,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ ['if-equals',Value1,Value2,Then,Else],!,Test = equal_enough(ResValue1,ResValue2), - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - f2p(HeadIs,ResValue2,Value2,CodeForValue2), - compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). - -cname_var(Sym,Src):- gensym(Sym,SrcV),Src='$VAR'(SrcV). -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['assertEqual',Value1,Value2],!, - cname_var('Src_',Src), - cname_var('FA_',ResValue1), - cname_var('FA_',ResValue2), - cname_var('FARL_',L1), - cname_var('FARL_',L2), - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - f2p(HeadIs,ResValue2,Value2,CodeForValue2), - Converted = - (Src = Convert, - loonit_assert_source_tf(Src, - (findall(ResValue1,CodeForValue1,L1), - findall(ResValue2,CodeForValue2,L2)), - equal_enough(L1,L2),RetResult)). -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['assertEqualToResult',Value1,Value2],!, - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - Converted = loonit_assert_source_tf(Convert, - findall(ResValue1,CodeForValue1,L1), - equal_enough(L1,Value2),RetResult). - - -compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- - Convert =~ 'add-atom'(Where,What), !, - =(What,WhatP), - Converted = as_tf('add-atom'(Where,WhatP),RetResult). - -compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- - Convert =~ 'add-atom'(Where,What,RetResult), !, - =(What,WhatP), - Converted = as_tf('add-atom'(Where,WhatP),RetResult). - - -compile_flow_control(HeadIs,RetResult,Convert, (Converted)) :- - Convert =~ ['superpose',UValueL], - maybe_unlistify(UValueL,ValueL,URetResult,RetResult), - maplist(f2p_assign(HeadIs,URetResult),ValueL,CodeForValueL), - list_to_disjuncts(CodeForValueL,Converted),!. - - -maybe_unlistify([UValueL],ValueL,RetResult,[URetResult]):- is_list(UValueL),!, - maybe_unlistify(UValueL,ValueL,RetResult,URetResult). -maybe_unlistify(ValueL,ValueL,RetResult,RetResult). - -list_to_disjuncts([],false). -list_to_disjuncts([A],A):- !. -list_to_disjuncts([A|L],(A;D)):- list_to_disjuncts(L,D). - - -f2p_assign(_HeadIs,V,Value,is_True(V)):- Value=='True'. -f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- \+ compound(Value),!. -f2p_assign(_HeadIs,ValueR,Value,ValueR=Value):- is_ftVar(Value),!. -f2p_assign(HeadIs,ValueResult,Value,Converted):- - f2p(HeadIs,ValueResultR,Value,CodeForValue), - %into_equals(ValueResultR,ValueResult,ValueResultRValueResult), - ValueResultRValueResult = (ValueResultR=ValueResult), - combine_code(CodeForValue,ValueResultRValueResult,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, (ValueCode, Converted)) :- - Convert =~ ['case',Value|Options], - \+ is_ftVar(Value),!, - cname_var('CASE_EVAL_',ValueResult), - ConvertCases =~ ['case',ValueResult|Options], - compile_flow_control(HeadIs,RetResult,ConvertCases, Converted), - f2p(HeadIs,ValueResult,Value,ValueCode). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['case',Value,[Opt|Options]],nonvar(Opt),!, - must_det_ll(( - compile_case_bodies(HeadIs,Opt,caseStruct(Value,If,RetResult,Then)), - Converted = ( If -> Then ; Else ), - ConvertCases =~ ['case',Value,Options], - compile_flow_control(HeadIs,RetResult,ConvertCases,Else))). - -compile_flow_control(_HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['case',_Value,[]],!,Converted = (fail,RetResult=[]),!. - -/* -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['case',Value,Options],!, - must_det_ll(( - maplist(compile_case_bodies(HeadIs),Options,Cases), - Converted = - (( AllCases = Cases, - once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), - (MatchCode,unify_enough(Value,MatchVar)))), - (BodyCode), - BodyResult=RetResult)))). - -compile_flow_control(HeadIs,_,Convert, Converted) :- - Convert =~ ['case',Value,Options,RetResult],!, - must_det_ll(( - f2p(HeadIs,ValueResult,Value,ValueCode), - maplist(compile_case_bodies(HeadIs),Options,Cases), - Converted = - (( AllCases = Cases, - call(ValueCode), - once((member(caseStruct(MatchVar,MatchCode,BodyResult,BodyCode),AllCases), - both_of(ValueResult,MatchCode,unify_enough(ValueResult,MatchVar)))), - call(BodyCode), - BodyResult=RetResult)))). - - -both_of(Var,G1,G2):- nonvar(Var),!,call(G2),call(G1). -both_of(_Var,G1,G2):- call(G1),call(G2). - -*/ - -compile_case_bodies(HeadIs,[Match,Body],caseStruct(_,true,BodyResult,BodyCode)):- Match == '%void%',!, - f2p(HeadIs,BodyResult,Body,BodyCode). -compile_case_bodies(HeadIs,[Match,Body],caseStruct(MatchResult,If,BodyResult,BodyCode)):- !, - f2p(HeadIs,MatchResultV,Match,MatchCode), - combine_code(MatchCode,unify_enough(MatchResult,MatchResultV),If), - f2p(HeadIs,BodyResult,Body,BodyCode). -compile_case_bodies(HeadIs,MatchBody,CS):- compound(MatchBody), MatchBody =~ MB,compile_case_bodies(HeadIs,MB,CS). - -compile_flow_control(HeadIs,RetResult,Convert,CodeForValueConverted) :- - Convert =~ [Plus,N,Value], atom(Plus), current_predicate(Plus/3), number(N), \+ number(Value), \+ is_ftVar(Value),!, - f2p(HeadIs,ValueResult,Value,CodeForValue),!, - Converted =.. [Plus,N,ValueResult,RetResult], - combine_code(CodeForValue,Converted,CodeForValueConverted). - -compound_equals(COL1,COL2):- COL1=@=COL2,!,COL1=COL2. -compound_equals(COL1,COL2):- compound_equals1(COL1,COL2). -compound_equals1(COL1,COL2):- is_ftVar(COL1),!,is_ftVar(COL2),ignore(COL1=COL2),!. -compound_equals1(COL1,COL2):- compound(COL1),!,compound(COL2), COL1=COL2. - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['superpose',COL],compound_equals(COL,'collapse'(Value1)), - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - Converted = (findall(ResValue1,CodeForValue1,Gathered),member(RetResult,Gathered)). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['collapse',Value1],!, - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - Converted = (findall(ResValue1,CodeForValue1,RetResult)). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- - Convert =~ ['compose',Value1],!, - Convert2 =~ ['collapse',Value1],!, - compile_flow_control(HeadIs,RetResult,Convert2, Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ ['unify',Value1,Value2,Then,Else],!,Test = metta_unify(ResValue1,ResValue2), - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - f2p(HeadIs,ResValue2,Value2,CodeForValue2), - compile_test_then_else(RetResult,(CodeForValue1,CodeForValue2,Test),Then,Else,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ ['let',Var,Value1,Body],!, - f2p(HeadIs,ResValue1,Value1,CodeForValue1), - f2p(HeadIs,RetResult,Body,BodyCode), - into_equals(Var,ResValue1,VarResValue1), - list_to_conjuncts([CodeForValue1,VarResValue1,BodyCode],Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), - Convert =~ ['let*',Bindings,Body],!, - must_det_ll(( - maplist(compile_let_star(HeadIs),Bindings,CodeList), - list_to_conjuncts(CodeList,BindingCode), - f2p(HeadIs,RetResult,Body,BodyCode), - combine_code(BindingCode,BodyCode,Converted))). - - compile_let_star(HeadIs,NV,Converted):- - must_det_ll((NV =~ [Expression,Var], - (var(Var)-> f2p(HeadIs,Var,Expression,Converted); - (var(Expression)-> f2p(HeadIs,Expression,Var,Converted); - (f2p(HeadIs,Eval1Result,Expression,Code), - into_equals(Eval1Result,Var,Eval1ResultVar), - combine_code(Code,Eval1ResultVar,Converted)))))). - - - -% match('&self',f(1)=Y,Y) -compile_flow_control(HeadIs,Y,Convert,Converted) :- dif_functors(HeadIs,Convert), - Convert=~ match('&self',AsFunctionY,YY), nonvar(AsFunctionY),( AsFunctionY =~ (AsFunction=Y)), nonvar(AsFunction), - !, Y==YY, - f2p(HeadIs,Y,AsFunction,Converted),!. - -compile_flow_control(HeadIs,RetResult,Convert,Converted) :- dif_functors(HeadIs,Convert), - Convert =~ ['match',_Self,Pattern,Template],!, - f2p(HeadIs,_,Pattern,PatternCode), - f2p(HeadIs,RetResult,Template,TemplateCode), - combine_code(PatternCode,TemplateCode,Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), - Convert =~ ['match',_Self,Pattern,Template],!, - must_det_ll(( - f2p(HeadIs,_,Pattern,PatternCode), - into_equals(RetResult,Template,TemplateCode), - combine_code(PatternCode,TemplateCode,Converted))). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- dif_functors(HeadIs,Convert), - Convert =~ ['if-decons',Atom,Head,Tail,Then,Else],!,Test = unify_cons(AtomResult,ResHead,ResTail), - f2p(HeadIs,AtomResult,Atom,AtomCode), - f2p(HeadIs,ResHead,Head,CodeForHead), - f2p(HeadIs,ResTail,Tail,CodeForTail), - compile_test_then_else(RetResult,(AtomCode,CodeForHead,CodeForTail,Test),Then,Else,Converted). - - - -compile_flow_control(_HeadIs,RetResult,Convert,is_True(RetResult)) :- is_compiled_and(AND), - Convert =~ [AND],!. - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), - Convert =~ [AND,Body],!, - f2p(HeadIs,RetResult,Body,BodyCode), - compile_test_then_else(RetResult,BodyCode,'True','False',Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), - Convert =~ [AND,Body1,Body2],!, - f2p(HeadIs,B1Res,Body1,Body1Code), - f2p(HeadIs,RetResult,Body2,Body2Code), - into_equals(B1Res,'True',AE), - Converted = (Body1Code,AE,Body2Code),!. - - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), - Convert =~ [AND,Body1,Body2],!, - f2p(HeadIs,B1Res,Body1,Body1Code), - f2p(HeadIs,_,Body2,Body2Code), - into_equals(B1Res,'True',AE), - compile_test_then_else(RetResult,(Body1Code,AE,Body2Code),'True','False',Converted). - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- is_compiled_and(AND), - Convert =~ [AND,Body1,Body2|BodyMore],!, - And2 =~ [AND,Body2|BodyMore], - Next =~ [AND,Body1,And2], - compile_flow_control(HeadIs,RetResult, Next, Converted). - -compile_flow_control(HeadIs,RetResult,sequential(Convert), Converted) :- !, - compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted). - -compile_flow_control(HeadIs,RetResult,transpose(Convert), Converted,Code) :- !, - maplist(each_result(HeadIs,RetResult),Convert, Converted), - list_to_disjuncts(Converted,Code). - - -compile_flow_control(HeadIs,RetResult,Convert, Converted) :- % dif_functors(HeadIs,Convert), - Convert =~ if(Cond,Then),!, - f2p(HeadIs,CondResult,Cond,CondCode), - f2p(HeadIs,RetResult,Then,ThenCode), - Converted = ((CondCode,is_True(CondResult)),ThenCode). - -each_result(HeadIs,RetResult,Convert,Converted):- - f2p(HeadIs,OneResult,Convert,Code1), - into_equals(OneResult,RetResult,Code2), - combine_code(Code1,Code2,Converted). - -compile_flow_control(HeadIs,RetResult,Converter, Converted):- de_eval(Converter,Convert),!, - compile_flow_control(HeadIs,RetResult,Convert, Converted). - -compile_flow_control(HeadIs,_Result,Convert, Converted) :- fail, - functor(Convert,Func,PA), - functional_predicate_arg(Func,PA,Nth), - Convert =~ [Func|PredArgs], - nth1(Nth,PredArgs,Result,FuncArgs), - RetResult = Result, - AsFunct =~ [Func|FuncArgs], - compile_flow_control(HeadIs,RetResult,AsFunct, Converted). - -dif_functors(HeadIs,_):- var(HeadIs),!,fail. -dif_functors(HeadIs,_):- \+ compound(HeadIs),!. -dif_functors(HeadIs,Convert):- compound(HeadIs),compound(Convert), - compound_name_arity(HeadIs,F,A),compound_name_arity(Convert,F,A). - -is_compiled_and(AND):- member(AND,[ (','), ('and')]). - -flowc. - - - :- discontiguous f2p/4. - -f2p(_HeadIs,Convert, Convert, true) :- - (is_ftVar(Convert);number(Convert)),!.% Check if Convert is a variable - -% If Convert is a variable, the corresponding predicate is just eval(Convert, RetResult) -f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- - is_ftVar(Convert),!,% Check if Convert is a variable - into_equals(RetResult,Convert,RetResultConverted). - % Converted = eval(Convert, RetResult). % Set Converted to eval(Convert, RetResult) -f2p(_HeadIs,RetResult,Convert, RetResultConverted) :- - number(Convert),!,into_equals(RetResult,Convert,RetResultConverted). - -f2p(_HeadIs,RetResult,Convert, Converted) :- % HeadIs\=@=Convert, - is_arity_0(Convert,F), !, Converted = u_assign([F],RetResult),!. - - - -/*f2p(HeadIs,RetResult, ConvertL, (Converted,RetResultL=RetResult)) :- is_list(ConvertL), - maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), - list_to_conjuncts(ConvertedL,Converted).*/ - -% If Convert is an "eval" function, we convert it to the equivalent "is" predicate. -f2p(HeadIs,RetResult,EvalConvert,Converted):- EvalConvert =~ eval(Convert), !, - must_det_ll((f2p(HeadIs,RetResult,Convert, Converted))). - -f2p(HeadIs,RetResult,Convert, Converted):- - compound(Convert), \+ compound_name_arity(Convert,_,0), - compile_flow_control(HeadIs,RetResult,Convert, Converted),!. - -f2p(HeadIs,RetResult,Convert, Converted):- - compound(Convert), Convert = u_assign(C, Var), compound_non_cons(C),into_list_args(C,CC),!, - f2p(HeadIs,RetResult,u_assign(CC, Var), Converted). - -f2p(_HeadIs,_RetResult,Convert, Converted):- - compound(Convert), Convert = u_assign(C, _Var), is_list(C),Converted = Convert,!. - -f2p(HeadIs,RetResult,Convert, Converted) :- - atom(Convert), functional_predicate_arg(Convert,Nth,Nth2), - Nth==1,Nth2==1, - HeadIs\=@=Convert, - Convert = F,!, - must_det_ll(( - do_predicate_function_canonical(FP,F), - compound_name_list(Converted,FP,[RetResult]))). - -% If Convert is a number or an atom, it is considered as already converted. -f2p(_HeadIs,RetResult, Convert, RetResult = Convert) :- % HeadIs\=@=Convert, - once(number(Convert); atom(Convert); data_term(Convert)), % Check if Convert is a number or an atom - !. % Set RetResult to Convert as it is already in predicate form - -% If Convert is an "is" function, we convert it to the equivalent "is" predicate. -f2p(HeadIs,RetResult,is(Convert),(Converted,is(RetResult,Result))):- !, - must_det_ll((f2p(HeadIs,Result,Convert, Converted))). - -% If Convert is an "or" function, we convert it to the equivalent ";" (or) predicate. -f2p(HeadIs,RetResult,or(AsPredI,Convert), or(AsPredO, Converted)) :- !, - must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), - f2p(HeadIs,RetResult,Convert, Converted))). -f2p(HeadIs,RetResult,(AsPredI; Convert), (AsPredO; Converted)) :- !, - must_det_ll((f2p(HeadIs,RetResult,AsPredI, AsPredO), - f2p(HeadIs,RetResult,Convert, Converted))). - -% If Convert is a "," (and) function, we convert it to the equivalent "," (and) predicate. -f2p(HeadIs,RetResult,(AsPredI, Convert), (AsPredO, Converted)) :- !, - must_det_ll((f2p(HeadIs,_RtResult,AsPredI, AsPredO), - f2p(HeadIs,RetResult,Convert, Converted))). - -% If Convert is a ":-" (if) function, we convert it to the equivalent ":-" (if) predicate. -f2p(_HeadIs,RetResult, Convert, Converted) :- Convert =(H:-B),!, - RetResult=(H:-B), Converted = true. - -f2p(_HeadIs,_RetResult, N=V, Code) :- !, into_equals(N,V,Code). - - -into_equals(RetResultL,RetResult,Equals):- into_u_assign(RetResultL,RetResult,Equals). -into_u_assign(RetResultL,RetResult,true):- is_ftVar(RetResultL), is_ftVar(RetResult), RetResult=RetResultL,!. -into_u_assign(RetResultL,RetResult,Code):- var(RetResultL), Code = u_assign(RetResult,RetResultL). -into_u_assign(RetResultL,RetResult,Code):- Code = u_assign(RetResultL,RetResult). - - - -% If Convert is a list, we convert it to its termified form and then proceed with the functs_to_preds conversion. -f2p(HeadIs,RetResult,Convert, Converted) :- is_list(Convert), - once((sexpr_s2p(Convert,IS), \+ IS=@=Convert)), !, % Check if Convert is a list and not in predicate form - must_det_ll((f2p(HeadIs,RetResult, IS, Converted))). % Proceed with the conversion of the predicate form of the list. - -f2p(HeadIs,RetResult, ConvertL, Converted) :- is_list(ConvertL), - maplist(f2p_assign(HeadIs),RetResultL,ConvertL, ConvertedL), - list_to_conjuncts(ConvertedL,Conjs), - into_u_assign(RetResultL,RetResult,Code), - combine_code(Conjs,Code,Converted). - - - -f2p(HeadIs,RetResultL, ConvertL, Converted) :- is_list(ConvertL), - ConvertL = [Convert], - f2p(HeadIs,RetResult,Convert, Code),!, - into_equals(RetResultL,[RetResult],Equals), - combine_code(Code,Equals,Converted). - - -% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. -f2p(HeadIs,RetResult,Convert, Converted) :- - rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert - % sub_term(AsFunction, Convert), AsFunction\==Convert, - callable(AsFunction), % Check if AsFunction is callable - compile_flow_control(HeadIs,Result,AsFunction, AsPred), - HeadIs\=@=AsFunction,!, - subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert - f2p(HeadIs,RetResult,(AsPred,Converting), Converted). % Proceed with the conversion of the remaining terms - -% If any sub-term of Convert is a function, convert that sub-term and then proceed with the conversion. -f2p(HeadIs,RetResult,Convert, Converted) :- - rev_sub_sterm(AsFunction, Convert), % Get the deepest sub-term AsFunction of Convert - callable(AsFunction), % Check if AsFunction is callable - is_function(AsFunction, Nth), % Check if AsFunction is a function and get the position Nth where the result is stored/retrieved - HeadIs\=@=AsFunction, - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred - subst(Convert, AsFunction, Result, Converting), % Substitute AsFunction by Result in Convert - f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms - -% If AsFunction is a recognized function, convert it to a predicate. -f2p(HeadIs,RetResult,AsFunction,AsPred):- % HeadIs\=@=AsFunction, - is_function(AsFunction, Nth), % Check if AsFunction is a recognized function and get the position Nth where the result is stored/retrieved - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, RetResult, Nth, AsPred), - \+ ( compound(AsFunction), arg(_,AsFunction, Arg), is_function(Arg,_)),!. - -% If any sub-term of Convert is an eval/2, convert that sub-term and then proceed with the conversion. -f2p(HeadIs,RetResult,Convert, Converted) :- - rev_sub_sterm0(ConvertFunction, Convert), % Get the deepest sub-term AsFunction of Convert - callable(ConvertFunction), % Check if AsFunction is callable - ConvertFunction = eval(AsFunction,Result), - ignore(is_function(AsFunction, Nth)), - funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred), % Convert AsFunction to a predicate AsPred - subst(Convert, ConvertFunction, Result, Converting), % Substitute AsFunction by Result in Convert - f2p(HeadIs,RetResult, (AsPred, Converting), Converted). % Proceed with the conversion of the remaining terms - -/* MAYBE USE ? -% If Convert is a compound term, we need to recursively convert its arguments. -f2p(HeadIs,RetResult, Convert, Converted) :- fail, - compound(Convert), !, - Convert =~ [Functor|Args], % Deconstruct Convert to functor and arguments - maplist(convert_argument, Args, ConvertedArgs), % Recursively convert each argument - Converted =~ [Functor|ConvertedArgs], % Reconstruct Converted with the converted arguments - (callable(Converted) -> f2p(HeadIs,RetResult, Converted, _); true). % If Converted is callable, proceed with its conversion -% Helper predicate to convert an argument of a compound term -convert_argument(Arg, ConvertedArg) :- - (callable(Arg) -> ftp(_, _, Arg, ConvertedArg); ConvertedArg = Arg). -*/ - -% The catch-all If no specific case is matched, consider Convert as already converted. -f2p(_HeadIs,_RetResult,u_assign(Convert,Res), u_assign(Convert,Res)):-!. -f2p(_HeadIs,RetResult,Convert, Code):- into_u_assign(Convert,RetResult,Code). - - - -data_term(Convert):- self_eval(Convert),!. - - -de_eval(eval(X),X):- compound(X),!. - -call1(G):- call(G). -call2(G):- call(G). -call3(G):- call(G). -call4(G):- call(G). -call5(G):- call(G). - -trace_break:- trace,break. - -u_assign(FList,R):- var(FList),nonvar(R), !, u_assign(R,FList). -u_assign(FList,R):- FList=@=R,!,FList=R. -u_assign(FList,R):- number(FList), var(R),!,R=FList. -u_assign(FList,R):- self_eval(FList), var(R),!,R=FList. -u_assign(FList,R):- var(FList),!,/*trace,*/freeze(FList,u_assign(FList,R)). -u_assign([V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(_Eq,V),!,maplist(eval_args,VI,VO). -u_assign((F:-List),R):- !, R = (F:-List). -u_assign(FList,R):- \+ compound(FList), var(R),!,R=FList. -u_assign([F|List],R):- F == ':-',!, trace_break,as_tf(clause(F,List),R). -u_assign([F|List],R):- atom(F),append(List,[R],ListR), - catch(quietly(apply(F,ListR)),error(existence_error(procedure,F/_),_), - catch(quietly(as_tf(apply(F,List),R)),error(existence_error(procedure,F/_),_), - quietly(catch(eval_args([F|List],R),_, R=[F|List])))),!. -u_assign(FList,RR):- iz_conz(FList),!,as_tf(FList,RR). -u_assign(FList,RR):- (compound_non_cons(FList),u_assign_c(FList,RR))*->true;FList=~RR. - -u_assign_c(FList,RR):- - functor(FList,F,_), - (catch(quietlY(call(FList,R)),error(existence_error(procedure,F/_),_), - catch(quietlY(as_tf(FList,R)),error(existence_error(procedure,F/_),_), - quietlY((p2m(FList,[F|List]),catch(eval_args([F|List],R),_, R=~[F|List])))))),!,R=RR. -u_assign_c(FList,R):- compound(FList), FList=~R. - -quietlY(G):- call(G). - -call_fr(G,Result,FA):- current_predicate(FA),!,call(G,Result). -call_fr(G,Result,_):- Result=G. - -% This predicate is responsible for converting functions to their equivalent predicates. -% It takes a function 'AsFunction' and determines the predicate 'AsPred' which will be -% equivalent to the given function, placing the result of the function at the 'Nth' position -% of the predicate arguments. The 'Result' will be used to store the result of the 'AsFunction'. -% -% It handles cases where 'AsFunction' is a variable and when it's an atom or a compound term. -% For compound terms, it decomposes them to get the functor and arguments and then reconstructs -% the equivalent predicate with the 'Result' at the 'Nth' position. -% -% Example: -% funct_with_result_is_nth_of_pred(HeadIs,+(1, 2), Result, 3, +(1, 2, Result)). - -into_callable(Pred,AsPred):- is_ftVar(Pred),!,AsPred=holds(Pred). -into_callable(Pred,AsPred):- Pred=AsPred,!. -into_callable(Pred,AsPred):- iz_conz(Pred), !,AsPred=holds(Pred). -into_callable(Pred,AsPred):- Pred=call_fr(_,_,_),!,AsPred=Pred. -into_callable(Pred,AsPred):- Pred =~ Cons, !,AsPred=holds(Cons). - -funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- - var(AsPred),!, - funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, Pred), - into_callable(Pred,AsPred). - -funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- - var(AsFunction),!, - funct_with_result_is_nth_of_pred0(HeadIs,Function, Result, Nth, AsPred), - into_callable(Function,AsFunction). - -funct_with_result_is_nth_of_pred(HeadIs,AsFunction, Result, Nth, AsPred):- - funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). - -% Handles the case where AsFunction is a variable. -% It creates a compound term 'AsPred' and places the 'Result' at the 'Nth' position -% of the predicate arguments, and the 'AsFunction' represents the functional form with -% arguments excluding the result. -funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, AsPred) :- - is_ftVar(AsFunction),!, - compound(AsPred), - compound_name_list(AsPred,FP,PredArgs), - nth1(Nth,PredArgs,Result,FuncArgs), - do_predicate_function_canonical(FP,F), - AsFunction =~ [F,FuncArgs]. - -% Handles the case where 'AsFunction' is not a variable. -% It decomposes 'AsFunction' to get the functor and arguments (FuncArgs) of the function -% and then it constructs the equivalent predicate 'AsPred' with 'Result' at the 'Nth' -% position of the predicate arguments. -funct_with_result_is_nth_of_pred0(HeadIs,AsFunctionO, Result, Nth, (AsPred)) :- - de_eval(AsFunctionO,AsFunction),!,funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, Nth, AsPred). - -funct_with_result_is_nth_of_pred0(HeadIs,AsFunction, Result, _Nth, AsPred) :- - nonvar(AsFunction), - compound(AsFunction), - \+ is_arity_0(AsFunction,_), - functor(AsFunction,F,A), - HeadIs\=@=AsFunction, - \+ (compound(HeadIs), (is_arity_0(HeadIs,HF);functor(HeadIs,HF,_))-> HF==F), - (into_u_assign(AsFunction, Result,AsPred) - -> true - ; (AA is A+1, - (FAA=(F/AA)), - \+ current_predicate(FAA), !, - AsPred = call_fr(AsFunction,Result,FAA))). - - -funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- - (atom(AsFunction)->AsFunction =~ [F | FuncArgs]; compound_name_list(AsFunction,F,FuncArgs)), - ignore(var(Nth) -> is_function(AsFunction,Nth); true), - nth1(Nth, PredArgs, Result, FuncArgs), % It places 'Result' at the 'Nth' position - AA is Nth+1, \+ current_predicate(F/AA), - do_predicate_function_canonical(FP,F), - AsPred =~ [FP | PredArgs]. % It forms the predicate 'AsPred' by joining the functor with the modified arguments list. - - - -funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, Result, Nth, (AsPred)) :- - nonvar(AsFunction), - AsFunction =~ [F | FuncArgs], - do_predicate_function_canonical(FP,F), - length(FuncArgs, Len), - ignore(var(Nth) -> is_function(AsFunction,Nth); true), - ((number(Nth),Nth > Len + 1) -> throw(error(index_out_of_bounds, _)); true), - (var(Nth)->(between(1,Len,From1),Nth is Len-From1+1);true), - nth1(Nth,PredArgs,Result,FuncArgs), - AsPred =~ [FP | PredArgs]. - -% optionally remove next line -funct_with_result_is_nth_of_pred0(_HeadIs,AsFunction, _, _, _) :- - var(AsFunction), - throw(error(instantiation_error, _)). - -% The remove_funct_arg/3 predicate is a utility predicate that removes -% the Nth argument from a predicate term, effectively converting a -% predicate to a function. The first argument is the input predicate term, -% the second is the position of the argument to be removed, and the third -% is the output function term. -remove_funct_arg(AsPred, Nth, AsFunction) :- - % Decompose AsPred into its functor and arguments. - AsPred =~ [F | PredArgs], - % Remove the Nth element from PredArgs, getting the list FuncArgs. - nth1(Nth,PredArgs,_Result,FuncArgs), - % Construct AsFunction using the functor and the list FuncArgs. - do_predicate_function_canonical(F,FF), - compound_name_list(AsFunction,FF,FuncArgs). - -% rev_sub_sterm/2 predicate traverses through a given Term -% and finds a sub-term within it. The sub-term is unifiable with ST. -% This is a helper predicate used in conjunction with others to inspect -% and transform terms. - -rev_sub_sterm(ST, Term):- rev_sub_sterm0(ST, Term), ST\=@=Term. -rev_sub_sterm0(_, Term):- never_subterm(Term),!,fail. -rev_sub_sterm0(ST, Term):- Term =~ if(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). -rev_sub_sterm0(ST, Term):- Term =~ 'if-error'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). -rev_sub_sterm0(ST, Term):- Term =~ 'if-decons'(Cond,_Then,_Else),!,rev_sub_sterm0(ST, Cond). -rev_sub_sterm0(ST, Term):- Term =~ 'chain'(Expr,_Var,_Next),!,rev_sub_sterm0(ST, Expr). -rev_sub_sterm0(ST, Term):- - % If Term is a list, it reverses the list and searches for a member - % in the reversed list that is unifiable with ST. - is_list(Term),!,rev_member(E,Term),rev_sub_sterm0(ST, E). -rev_sub_sterm0(ST, Term):- - % If Term is a compound term, it gets its arguments and then recursively - % searches in those arguments for a sub-term unifiable with ST. - compound(Term), compound_name_list(Term,_,Args),rev_sub_sterm0(ST, Args). -rev_sub_sterm0(ST, ST):- - % If ST is non-var, not an empty list, and callable, it unifies - % ST with Term if it is unifiable. - nonvar(ST), ST\==[], callable(ST). - -never_subterm(Term):- is_ftVar(Term). -never_subterm([]). -never_subterm('Nil'). -%never_subterm(F):- atom(F),not_function(F,0). - -% rev_member/2 predicate is a helper predicate used to find a member -% of a list. It is primarily used within rev_sub_sterm/2 to -% traverse through lists and find sub-terms. It traverses the list -% from the end to the beginning, reversing the order of traversal. -rev_member(E,[_|L]):- rev_member(E,L). -rev_member(E,[E|_]). - -% Continuing from preds_to_functs/2 -% Converts a given predicate representation to its equivalent function representation -preds_to_functs(Convert, Converted):- - % Verbose_unify/1 here may be used for debugging or to display detailed unification information - verbose_unify(Convert), - % Calls the auxiliary predicate preds_to_functs0/2 to perform the actual conversion - preds_to_functs0(Convert, Converted). - -% if Convert is a variable, Converted will be the same variable -preds_to_functs0(Convert, Converted) :- - is_ftVar(Convert), !, - Converted = Convert. - -% Converts the rule (Head :- Body) to its function equivalent -preds_to_functs0((Head:-Body), Converted) :- !, - % The rule is converted by transforming Head to a function AsFunction and the Body to ConvertedBody - ( - pred_to_funct(Head, AsFunction, Result), - %ignore(Result = '$VAR'('HeadRes')), - conjuncts_to_list(Body,List), - reverse(List,RevList),append(Left,[BE|Right],RevList), - compound(BE),arg(Nth,BE,ArgRes),sub_var(Result,ArgRes), - remove_funct_arg(BE, Nth, AsBodyFunction), - append(Left,[eval(AsBodyFunction,Result)|Right],NewRevList), - reverse(NewRevList,NewList), - list_to_conjuncts(NewList,NewBody), - preds_to_functs0(NewBody,ConvertedBody), - % The final Converted term is constructed - into_equals(AsFunction,ConvertedBody,Converted)). - -% Handles the case where Convert is a conjunction, and AsPred is not not_function. -% It converts predicates to functions inside a conjunction -preds_to_functs0((AsPred, Convert), Converted) :- - \+ not_function(AsPred), - pred_to_funct(AsPred, AsFunction, Result), - sub_var(Result, Convert), !, - % The function equivalent of AsPred replaces Result in Convert - subst(Convert, Result, AsFunction, Converting), - preds_to_functs0(Converting, Converted). - -% Handles the special case where eval/2 is used and returns the function represented by the first argument of eval/2 -preds_to_functs0(eval(AsFunction, _Result), AsFunction) :- !. - -% Handles the general case where Convert is a conjunction. -% It converts the predicates to functions inside a conjunction -preds_to_functs0((AsPred, Converting), (AsPred, Converted)) :- !, - preds_to_functs0(Converting, Converted). - -% Handles the case where AsPred is a compound term that can be converted to a function -preds_to_functs0(AsPred, eval(AsFunction, Result)) :- - pred_to_funct(AsPred, AsFunction, Result), !. - -% any other term remains unchanged -preds_to_functs0(X, X). - -% Converts a given predicate AsPred to its equivalent function term AsFunction -pred_to_funct(AsPred, AsFunction, Result) :- - compound(AsPred), % Checks if AsPred is a compound term - functor(AsPred, F, A), % Retrieves the functor F and arity A of AsPred - functional_predicate_arg(F, A, Nth),!, % Finds the Nth argument where the result should be - arg(Nth, AsPred, Result), % Retrieves the result from the Nth argument of AsPred - remove_funct_arg(AsPred, Nth, AsFunction). % Constructs the function AsFunction by removing the Nth argument from AsPred - -% If not found in functional_predicate_arg/3, it tries to construct AsFunction by removing the last argument from AsPred -pred_to_funct(AsPred, AsFunction, Result) :- - compound(AsPred), !, - functor(AsPred, _, Nth), - arg(Nth, AsPred, Result), - remove_funct_arg(AsPred, Nth, AsFunction). - -% body_member/4 is utility predicate to handle manipulation of body elements in the clause, but the exact implementation details and usage are not provided in the given code. -body_member(Body,BE,NewBE,NewBody):- - conjuncts_to_list(Body,List), - reverse(List,RevList),append(Left,[BE|Right],RevList), - append(Left,[NewBE|Right],NewRevList), - reverse(NewRevList,NewList), - list_to_conjuncts(NewList,NewBody). -% combine_clauses/3 is the main predicate combining clauses with similar heads and bodies. -% HeadBodiesList is a list of clauses (Head:-Body) -% NewHead will be the generalized head representing all clauses in HeadBodiesList -% NewCombinedBodies will be the combined bodies of all clauses in HeadBodiesList. -combine_clauses(HeadBodiesList, NewHead, NewCombinedBodies) :- - % If HeadBodiesList is empty, then NewCombinedBodies is 'false' and NewHead is an anonymous variable. - (HeadBodiesList = [] -> NewCombinedBodies = false, NewHead = _ ; - % Find all Heads in HeadBodiesList and collect them in the list Heads - findall(Head, member((Head:-_), HeadBodiesList), Heads), - % Find the least general head among the collected Heads - least_general_head(Heads, LeastHead), - functor(LeastHead,F,A),functor(NewHead,F,A), - % Transform and combine bodies according to the new head found - transform_and_combine_bodies(HeadBodiesList, NewHead, NewCombinedBodies)), - \+ \+ ( - Print=[converting=HeadBodiesList,newHead=NewHead], - numbervars(Print,0,_,[]),fbug(Print),in_cmt(portray_clause(( NewHead :- NewCombinedBodies)))),!. - -% Predicate to find the least general unified head (LGU) among the given list of heads. -% Heads is a list of head terms, and LeastGeneralHead is the least general term that unifies all terms in Heads. -least_general_head(Heads, LeastGeneralHead) :- - lgu(Heads, LeastGeneralHead). - -% the LGU of a single head is the head itself. -lgu([Head], Head) :- !. -% find the LGU of the head and the rest of the list. -lgu([H1|T], LGU) :- - lgu(T, TempLGU), - % Find generalization between head H1 and temporary LGU - generalization(H1, TempLGU, LGU). - -% generalization/3 finds the generalization of two heads, Head1 and Head2, which is represented by GeneralizedHead. -% This predicate is conceptual and will require more complex processing depending on the actual structures of the heads. -generalization(Head1, Head2, GeneralizedHead) :- - % Ensure the functor names and arities are the same between Head1 and Head2. - functor(Head1, Name, Arity), - functor(Head2, Name, Arity), - functor(GeneralizedHead, Name, Arity), - % Generalize the arguments of the heads. - generalize_args(Arity, Head1, Head2, GeneralizedHead). - -% no more arguments to generalize. -generalize_args(0, _, _, _) :- !. -% generalize the corresponding arguments of the heads. -generalize_args(N, Head1, Head2, GeneralizedHead) :- - arg(N, Head1, Arg1), - arg(N, Head2, Arg2), - % If the corresponding arguments are equal, use them. Otherwise, create a new variable. - (Arg1 = Arg2 -> arg(N, GeneralizedHead, Arg1); arg(N, GeneralizedHead, _)), - % Continue with the next argument. - N1 is N - 1, - generalize_args(N1, Head1, Head2, GeneralizedHead). - -% transform_and_combine_bodies/3 takes a list of clause heads and bodies, a new head, and produces a combined body representing all the original bodies. -% The new body is created according to the transformations required by the new head. -transform_and_combine_bodies([(Head:-Body)|T], NewHead, CombinedBodies) :- - % Transform the body according to the new head. - transform(Head, NewHead, Body, TransformedBody), - % Combine the transformed body with the rest. - combine_bodies(T, NewHead, TransformedBody, CombinedBodies). - -/* OLD -% Define predicate combine_clauses to merge multiple Prolog clauses with the same head. -% It receives a list of clauses as input and returns a combined clause. -combine_clauses([Clause], Clause) :- !. % If there's only one clause, return it as is. -combine_clauses(Clauses, (Head :- Body)) :- % If there are multiple clauses, combine them. - Clauses = [(Head :- FirstBody)|RestClauses], % Decompose the list into the first clause and the rest. - combine_bodies(RestClauses, FirstBody, Body). % Combine the bodies of all the clauses. - -% Helper predicate to combine the bodies of a list of clauses. -% The base case is when there are no more clauses to combine; the combined body is the current body. -combine_bodies([], Body, Body). -combine_bodies([(Head :- CurrentBody)|RestClauses], PrevBody, Body) :- - % Combine the current body with the previous body using a conjunction (,). - combine_two_bodies(PrevBody, CurrentBody, CombinedBody), - % Recursively combine the rest of the bodies. - combine_bodies(RestClauses, CombinedBody, Body). - -% Predicate to combine two bodies. -% Handles the combination of different Prolog constructs like conjunctions, disjunctions, etc. -combine_two_bodies((A, B), (C, D), (A, B, C, D)) :- !. % Combine conjunctions. -combine_two_bodies((A; B), (C; D), (A; B; C; D)) :- !. % Combine disjunctions. -combine_two_bodies(A, B, (A, B)). % Combine simple terms using conjunction. -*/ - -% if there are no more bodies, the accumulated Combined is the final CombinedBodies. -combine_bodies([], _, Combined, Combined). -% combine the transformed body with the accumulated bodies. -combine_bodies([(Head:-Body)|T], NewHead, Acc, CombinedBodies) :- - transform(Head, NewHead, Body, TransformedBody), - % Create a disjunction between the accumulated bodies and the transformed body. - NewAcc = (Acc;TransformedBody), - combine_bodies(T, NewHead, NewAcc, CombinedBodies). - -% combine_code/3 combines Guard and Body to produce either Guard, Body, or a conjunction of both, depending on the values of Guard and Body. -combine_code(Guard, Body, Guard) :- Body==true, !. -combine_code(Guard, Body, Body) :- Guard==true, !. -combine_code(Guard, Body, (Guard, Body)). - -% create_unifier/3 creates a unification code that unifies OneHead with NewHead. -% If OneHead and NewHead are structurally equal, then they are unified and the unification Guard is 'true'. -% Otherwise, the unification code is 'metta_unify(OneHead,NewHead)'. - -create_unifier(OneHead,NewHead,Guard):- OneHead=@=NewHead,OneHead=NewHead,!,Guard=true. -create_unifier(OneHead,NewHead,Guard):- compound(OneHead), - compound_name_list(OneHead,_,Args1), - compound_name_list(NewHead,_,Args2), - create_unifier_goals(Args1,Args2,Guard),!. -create_unifier(OneHead,NewHead,u(OneHead,NewHead)). - -create_unifier_goals([V1],[V2],u(V1,V2)):-!. -create_unifier_goals([V1|Args1],[V2|Args2],RightGuard):-!, - create_unifier_goals(Args1,Args2,Guard), - combine_code(u(V1,V2),Guard,RightGuard). -create_unifier_goals([],[],true). - - -% transform/4 combines unification code with Body to produce NewBody according to the transformations required by NewHead. -% It uses create_unifier/3 to generate the unification code between OneHead and NewHead. -transform(OneHead, NewHead, Body, NewBody):- create_unifier(OneHead,NewHead,Guard), - combine_code(Guard,Body,NewBody). - - - - -% =============================== -% Compile in memory buffer -% =============================== - -add_assertion(NewAssertion) :- - expand_to_hb(NewAssertion,H,_), - functor(H,F,A), functor(HH,F,A), - assert(NewAssertion), - % Get the current clauses of my_predicate/1 - findall(HH:-B,clause(HH,B),Prev), - % Create a temporary file and add the new assertion along with existing clauses - abolish(F/A), - create_and_consult_temp_file(F/A, Prev). - -% Predicate to create a temporary file and write the tabled predicate -create_and_consult_temp_file(PredName/Arity, PredClauses) :- - % Generate a unique temporary memory buffer - tmp_file_stream(text, TempFileName, TempFileStream), - % Write the tabled predicate to the temporary file - format(TempFileStream, ':- multifile((~q)/~w).~n', [PredName, Arity]), - format(TempFileStream, ':- dynamic((~q)/~w).~n', [PredName, Arity]), - %if_t( \+ option_value('tabling',false), - if_t(option_value('tabling',true),format(TempFileStream,':- ~q.~n',[table(PredName/Arity)])), - maplist(write_clause(TempFileStream), PredClauses), - % Close the temporary file - close(TempFileStream), - % Consult the temporary file - consult(TempFileName), - % Delete the temporary file after consulting - delete_file(TempFileName), - assert(metta_compiled_predicate(PredName,Arity)). - -% Helper predicate to write a clause to the file -write_clause(Stream, Clause) :- - subst_vars(Clause,Can), - write_canonical(Stream, Can), - write(Stream, '.'), - nl(Stream). - - diff --git a/metta_vspace/pyswip_lng/metta_compiler.pl b/metta_vspace/pyswip_lng/metta_compiler.pl new file mode 120000 index 00000000..4a35aa84 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_compiler.pl @@ -0,0 +1 @@ +../pyswip/metta_compiler.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_convert.pl b/metta_vspace/pyswip_lng/metta_convert.pl deleted file mode 100755 index 5a7feb74..00000000 --- a/metta_vspace/pyswip_lng/metta_convert.pl +++ /dev/null @@ -1,319 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). -:- op(700,xfx,'=~'). - -% =============================== -% TESTING -% =============================== -% Define 'fb', a rule that calls 'make' and writes information for each clause of 'fb0'. -% 'make' compiles the program. -% The 'forall' loop will write and call all goals of the 'fb0' clauses. - - -fb:- make, - writeln(';; ==========================================='), - forall((clause(fb0,Goal),write(';; '),writeq(?- Goal),nl,call(Goal)), - writeln(';; ===========================================')). - -% The 'fb0' rule showing mettalog sources with specific definitions. -fb0:- show_mettalog_src((two_pi(R):-(pi(A), +(A, A, B), R is B))). -fb0:- show_mettalog_src(factorial_tail_basic). -fb0:- show_mettalog_src(funct). - -print_metta_src :- show_mettalog_src. -% 'show_mettalog_src' rule compiles the program and shows mettalog sources for each source file containing 'metta'. -show_mettalog_src:- make, - forall((source_file(AsPred,File), - symbol_contains(File,metta)), - show_mettalog_src(AsPred)). - - -% Handling different cases for 'show_mettalog_src' with different input parameters. -% These rules use nonvar, current_predicate, and other built-ins to perform various checks and actions -% based on the type and value of the input to 'show_mettalog_src'. -show_mettalog_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). -show_mettalog_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_mettalog_src(F,A)). -show_mettalog_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_mettalog_src(F,A)). -show_mettalog_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_mettalog_src(F,A)). -show_mettalog_src(C):- show_cvts(C),!. - -% The 'show_space_src' rules compile the program and show space sources for each space predicate. -show_space_src:- make, - forall(space_preds(AsPred),show_space_src(AsPred)). - - -% Similar to the 'show_mettalog_src' rules, these rules handle different cases for 'show_space_src' -% with different input parameters and perform various checks and actions based on the type and value of the input. -show_space_src(F/A):- nonvar(F),!, forall(current_predicate(F/A), show_space_src(F,A)). -show_space_src(AsPred):- functor(AsPred,F,A), \+ \+ current_predicate(F/A), !, forall(current_predicate(F/A), show_space_src(F,A)). -show_space_src(F):- atom(F), \+ \+ current_predicate(F/_),!, forall(current_predicate(F/A), show_space_src(F,A)). -show_space_src(C):- atom(C), \+ \+ (current_predicate(F/_),once(atom_contains(F,C))),!, forall((current_predicate(F/A),once(atom_contains(F,C))), show_space_src(F,A)). -show_space_src(C):- show_cvts(C),!. - -% 'show_cvts' rule processes a term, performing different actions based on the structure of the term. -show_cvts(Term):- - once((is_list(Term), sexpr_s2p(Term,PF))), \+ is_list(PF),!,show_cvts(PF). - -% 'show_cvts' continues processing, performing conversions between predicates and functions, -% and pretty-printing original terms, function forms, and Prolog forms. -show_cvts(Term):- iz_conz(Term),!, ppc(orig,Term),Term = FunctForm, - functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog), - preds_to_functs(Prolog,NFunctForm), ppc(functs,NFunctForm). -show_cvts(Term):- ppc(orig,Term), - preds_to_functs(Term,FunctForm), ppc(functs,FunctForm), - functs_to_preds(FunctForm,Prolog), ppc(preds,Prolog). - -% 'show_mettalog_src' for specific predicate, prints metta clauses if they exist in the source file containing 'metta'. -show_mettalog_src(F,A):- functor(Head,F,A), - ignore((predicate_property(Head,number_of_clauses(_)), - source_file(Head,File),atom_contains(File,metta),!, - nl,findall((Head:-Body), - clause(Head,Body), Clauses), - print_metta_clauses(Clauses))),nl. - -% 'print_metta_clauses' rule is handling the printing of metta clauses. -% It checks the form of the input clauses and calls 'print_metta_clause' accordingly. -print_metta_clauses([]):- !. -print_metta_clauses([Head:-Body]):- !, print_metta_clause(Head,Body). -print_metta_clauses(Clauses):- combine_clauses(Clauses,Head,Body),!,print_metta_clause(Head,Body). -print_metta_clause(Head,Body):- - print_metta_clause0(Head,Body), - show_cvts(Head:-Body). - -% 'print_metta_clause0' rule prints metta clauses based on the body. -% It transforms the body to a list, if needed, and prints it in a sequential form. -print_metta_clause0(Head,Body):- Body == true,!, pp_metta([=,Head,'True']). -print_metta_clause0(Head,Body):- Body == false,!, pp_metta([=,Head,'False']). -print_metta_clause0(Head,Body):- conjuncts_to_list(Body,List), into_sequential(List,SP), pp_metta([=,Head,SP]). - - - -% ========================================= -% STERM -> PTERM -% ========================================= - -iz_exact_symbol(N,_):- \+ atom(N),!,fail. -iz_exact_symbol(N,P):- nonvar(P),!,iz_exact_symbol(N,PP),zalwayz(P=PP). -iz_exact_symbol(':-',':-'). -iz_exact_symbol('?-','?-'). -iz_exact_symbol('??',_). - -%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). - -maybe_varz(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. - -%% sexpr_s2p(Fn,?VAR, ?V) is det. -% -% S-expression Sterm Converted To Pterm. -% -sexpr_s2p(HB,P):- fail, compound(HB), HB=~ (H=B), compile_for_assert(H,B,Cl), - clause_to_code(Cl,P),!. -sexpr_s2p(S,P):- sexpr_s2p(progn,1,S,P). - - -clause_to_code(P,P):- is_ftVar(P),!. -%clause_to_code(P:-True,P):- True == true,!. -clause_to_code((H:-B),P):- B==true, !, combine_code(B,H,P). -clause_to_code(P,P). - -sexpr_s2p(_Fn,_Nth,VAR,VAR):-is_ftVar(VAR),!. -sexpr_s2p(_Fn,_Nth,S,P):- iz_exact_symbol(S,P),!. -sexpr_s2p(_Fn,_Nth,'#'(S),P):- iz_exact_symbol(S,P),!. -sexpr_s2p(_Fn,_Nth,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. -sexpr_s2p(Fn,Nth,S,P):- S==[], iz_fun_argz(Fn,Nth),!,P=S. - -sexpr_s2p(Fn,Nth,S,P):- expects_type(Fn,Nth,Type),will_become_type(Type,S,P),!. - -sexpr_s2p(_Fn,_Nth,[F|SList],P):- is_list(SList), length(SList,Len),is_syspred(F,Len,Pred), sexpr_s2p_arglist(F,1,SList,PList), !, P=..[Pred|PList]. -:- style_check(-singleton). - -sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- iz_fun_argz(Fn,Nth),!,sexpr_s2p(S,P), sexpr_s2p(Fn,Nth,SList,PList). -sexpr_s2p(Fn,Nth,[S|SList],[P|PList]):- ( \+ atom(S) ; \+ is_list(SList)), !,sexpr_s2p(list(Fn),Nth,S,P), sexpr_s2p(list(Fn),Nth,SList,PList). -sexpr_s2p(_Fn,_Nth,[S,STERM0],PTERM):- iz_quoter(S),sexpr_s2p_pre_list(S,0,STERM0,STERM), !,PTERM=..[S,STERM],!. -sexpr_s2p(_Fn,_Nth,[S|SList],P):- atom(S), SList == [], compound_name_arity(P,S,0). -% sexpr_s2p(Fn,Nth,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_varz(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_s2p(Fn,Nth,NewList,PTERM). -% sexpr_s2p(Fn,Nth,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. -%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- \+ atom(S),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. -/* -sexpr_s2p(Fn,Nth,[S,Vars|TERM],PTERM):- nonvar(S), - call_if_defined(common_logic_snark:iz_quantifier(S)), - zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST), - PTERM =~ [S,Vars|PLIST])),!. -*/ -% sexpr_s2p(progn,_,[S|TERM],PTERM):- S==AND,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). -%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_s2p_arglist(Fn,Nth,[S|TERM],PTERM),!. -%sexpr_s2p(Fn,Nth,[S],O):- is_ftVar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. -%sexpr_s2p(Fn,Nth,[S],O):- nonvar(S),sexpr_s2p(Fn,Nth,S,Y),!,z_univ(Fn,Nth,O,[Y]),!. -%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- S==and,!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). -% sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_va_relation(S),!,zalwayz((maplist(sexpr_s2p,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). -%sexpr_s2p(Fn,Nth,[S|TERM],PTERM):- iz_relation_sexpr(S),zalwayz((sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),PTERM =~ [S|PLIST])),!. -%sexpr_s2p(Fn,Nth,STERM,PTERM):- STERM =~ [S|TERM],sexpr_s2p_arglist(Fn,Nth,TERM,PLIST),z_univ(Fn,Nth,PTERM,[S|PLIST]),!. -sexpr_s2p(Fn,Nth,[S|STERM0],PTERM):- - sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM), - sexpr_s2p_arglist(S,1,STERM,PLIST), z_univ(Fn,Nth,PTERM,[S|PLIST]),!. -sexpr_s2p(_Fn,_Nth,VAR,VAR). - - -expects_type(Fn,Nth,Type):- - get_operator_typedef(Self,Fn,Params,RetType), - nth0(Nth,[RetType|Params],Type),nonvar(Type). - -will_become_type(Type,S,P):- try_adjust_arg_types(=,_RetType,88,_Self,[Type],[S],[PS]),PS=P,!. -will_become_type(Type,S,P):- is_ftVar(S),!,P=S. -will_become_type(Type,S,P):- - get_type(S,T),!, - (is_subtype(T,Type)->S=P; P=coerce(Type,S)). -will_become_type(_Type,S,P):-!,S=P. - -is_subtype(T,TT):- T=@=TT,!,T=TT. -is_subtype(T,TT):- T=TT,!. - -iz_quoter('#BQ'):- iz_common_lisp. -iz_quoter('#COMMA'):- iz_common_lisp. -iz_quoter('quote'). -iz_quoter(superpose). - -iz_fun_argz(list(_),_). -iz_fun_argz(defmacro,2). -iz_fun_argz(defun,2). -iz_fun_argz(let,1). -iz_fun_argz('let*',1). -iz_fun_argz('member',2). -%iz_fun_argz('let*',2). -iz_fun_argz(F,1):- iz_quoter(F). - -z_functor(F):- \+ atom(F), !,fail. -z_functor(F):- \+ atom_concat('?',_,F). -z_functor(F):- \+ atom_concat('$',_,F). - -%z_univ(_Fn,1,S,S):-!. -z_univ(_Fn,_,P,[F|ARGS]):- z_functor(F),is_list(ARGS),length(ARGS,A),l_arity_l(F,A),compound_name_arguments(P,F,ARGS),!. -z_univ(_Fn,0,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. -z_univ(_Fn,_Nth,P,[F|ARGS]):- z_functor(F),is_list(ARGS),compound_name_arguments(P,F,ARGS),!. -z_univ(_Fn,_Nth,P,S):-P=S. - -l_arity_l(F,A):- clause_b(arity(F,A)). -l_arity_l(function,1). -l_arity_l(quote,1). -l_arity_l('#BQ',1):- iz_common_lisp. -l_arity_l(F,A):-current_predicate(F/A). -l_arity_l(_,1). - -sexpr_s2p_arglist(_Fn,_,VAR,VAR):-is_ftVar(VAR),!. -sexpr_s2p_arglist(Fn,Nth,[S|SList],[P|PList]):-sexpr_s2p(Fn,Nth,S,P), - (Nth>0->Nth2 is Nth+1;Nth2=0),sexpr_s2p_arglist(Fn,Nth2,SList,PList),!. -sexpr_s2p_arglist(Fn,Nth,S,P):-sexpr_s2p(Fn,Nth,S,P),!. -sexpr_s2p_arglist(_Fn,_Nth,VAR,VAR). - -sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ compound(STERM), !. -sexpr_s2p_pre_list(_Fn,_,STERM,STERM):- \+ is_list(STERM), !. -% sexpr_s2p_pre_list(Fn,_,[S|STERM],[S|STERM]):- STERM == [], !. -sexpr_s2p_pre_list(Fn,Nth,[S0|STERM0],[S|STERM]):- - (is_list(S0)->sexpr_s2p(Fn,Nth,S0,S);sexpr_s2p_pre_list(Fn,Nth,S0,S)), - sexpr_s2p_pre_list(Fn,Nth,STERM0,STERM),!. -sexpr_s2p_pre_list(_Fn,_,STERM,STERM). - - - - -% p2m/2 is a translation utility to convert Prolog constructs to MeTTa constructs. -% It handles a variety of cases, including different types of compound terms, -% control structures, and predicate definitions. -% The first argument is the input in Prolog syntax, -% and the second argument is the output converted to MeTTa syntax. - - -p2m(NC, NC) :- var(NC), !. % If NC is a variable, do not translate. -p2m(NC, NC) :- is_ftVar(NC), !. % If NC is a free term variable, do not translate. -% Conversion for lists -p2m([], 'Nil'). % empty list -p2m([H|T], 'Cons'(OH, OT)):- p2m(H, OH), p2m(T, OT). -p2m(NC, OO) :- - % If NC is a list, map each element of the list from Prolog to MeTTa - is_list(NC),!, - maplist(p2m, NC, OO). -p2m(!, '!'). % Translate the cut operation directly. -p2m(false, 'False'). -p2m(fail, 'False'). % Translate Prolog’s fail to MeTTa’s False. -p2m(true, 'True'). % Translate Prolog’s true to MeTTa’s True. -p2m(prolog, meTTa). % Translate the atom prolog to meTTa. - -p2m('[|]','Cons'). -p2m(( ';' ),or). -%p2m(( ',' ),and). -%p2m(( '\\+' ),unless). -%p2m(( ':-' ),entailed_by). -p2m('=..','atom_2_list'). - -% Conversion for any atomic term -p2m(A, A):- atomic(A). - -p2m(NC,NC):- \+ compound(NC),!. -p2m(NC,[F]):- compound_name_arity(NC,F,0),!. - -% Conversion for the negation as failure -p2m((\+ A), O):- !, p2m(not(A), O). - -p2m((G,E),O):- conjuncts_to_list((G,E),List),!,into_sequential(List,O),!. - -% Conversion for arithmetic evaluation -%p2m(is(A, B), O):- !, p2m(eval(B, A), O). -%p2m(is(V,Expr),let(V,Expr,'True')). -p2m((Head:-Body),O):- Body == true,!, O = (=(Head,'True')). -p2m((Head:-Body),O):- Body == fail,!, O = (=(Head,'False')). -p2m((Head:-Body),O):- conjuncts_to_list(Body,List),into_sequential(List,SP),!,O=(=(Head,SP)). - -% Conversion for if-then-else constructs -p2m((A->B;C),O):- !, p2m(if_then_else(A,B,C),O). -p2m((A;B),O):- !, p2m(or(A,B),O). -p2m((A*->B;C),O):- !, p2m(each_then_otherwise(A,B,C),O). -p2m((A->B),O):- !, p2m(if_then(A,B),O). -p2m((A*->B),O):- !, p2m(each_then(A,B),O). -p2m(metta_defn(Eq,Self,H,B),'add-atom'(Self,[Eq,H,B])). -p2m(metta_type,'add-atom'). -p2m(get_metta_atom,'add-atom'). -p2m(retractall(X),'remove-all-atoms'('&self',X)). -p2m(clause(H,B),'get-atoms'('&self',[=,H,B])). -p2m(retract(X),'remove-atom'('&self',X)). -p2m(assert(X),'add-atom'('&self',X)). -% The catch-all case for the other compound terms. -p2m(I,O):- I=..[F|II],maplist(p2m,[F|II],OO),O=..OO. - -% It will break down compound terms into their functor and arguments and apply p2m recursively -p2m(I, O):- - compound(I), - I =.. [F|II], % univ operator to convert between a term and a list consisting of functor name and arguments - maplist(p2m, II, OO), % applying p2m recursively on each argument of the compound term - sexpr_s2p([F|OO],O). % constructing the output term with the converted arguments - -% In the context of this conversion predicate, each branch of the p2m predicate -% is handling a different type or structure of term, translating it into its -% equivalent representation in another logic programming language named MeTTa. -% The actual transformations are dependent on the correspondence between Prolog -% constructs and MeTTa constructs, as defined by the specific implementations -% of Prolog and MeTTa being used. -prolog_to_metta(V, D) :- - % Perform the translation from Prolog to MeTTa - p2m(V, D),!. - - -% Define predicates to support the transformation from Prolog to MeTTa syntax -% (Continuing the translation from Prolog to MeTTa syntax as per the given code) -% Handle the case where the body is a conjunction of terms -into_sequential(Body, SP) :- - % Check if Body is not a list and convert conjunctions in Body to a list of conjuncts. - \+ is_list(Body), - conjuncts_to_list(Body, List), - is_list(List), % Converts a list of conjunctions into a sequential representation in MeTTa - into_sequential(List, SP), !. -into_sequential(Nothing,'True'):- Nothing ==[],!. - % If there's only one element -into_sequential([SP],O):- prolog_to_metta(SP,O). -% Otherwise, construct sequential representation using AND. -into_sequential(List, [AND|SPList]) :- is_compiled_and(AND), maplist(prolog_to_metta, List, SPList),!. - - - - - diff --git a/metta_vspace/pyswip_lng/metta_convert.pl b/metta_vspace/pyswip_lng/metta_convert.pl new file mode 120000 index 00000000..c6f11173 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_convert.pl @@ -0,0 +1 @@ +../pyswip/metta_convert.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_data.pl b/metta_vspace/pyswip_lng/metta_data.pl index dd1d3ba1..fa38a6c0 100755 --- a/metta_vspace/pyswip_lng/metta_data.pl +++ b/metta_vspace/pyswip_lng/metta_data.pl @@ -73,6 +73,10 @@ \+ arg_violation(Depth,Self,Arg,Type), arg_conform(Depth,Self,Arg,Type). +get_type(_,Depth,Self,A,ArgType):- get_type(Depth,Self,A,ArgType). +get_type0(_,Depth,Self,A,ArgType):- get_type0(Depth,Self,A,ArgType). +get_type1(_,Depth,Self,A,ArgType):- get_type1(Depth,Self,A,ArgType). + args_conform(_,_,I,O):- I==[],!,O=I. args_conform(_Dpth,_Slf,Args,ParamTypes):- ( \+ iz_conz(Args); \+ iz_conz(ParamTypes)), !. args_conform(Depth,Self,[A|Args],[TypeSought|ParamTypes]):- arg_conform(Depth,Self,A,TypeSought) , args_conform(Depth,Self,Args,ParamTypes). diff --git a/metta_vspace/pyswip_lng/metta_eval.pl b/metta_vspace/pyswip_lng/metta_eval.pl index 0a63ce61..d6abcbf2 100755 --- a/metta_vspace/pyswip_lng/metta_eval.pl +++ b/metta_vspace/pyswip_lng/metta_eval.pl @@ -80,7 +80,7 @@ get_type(Depth,Self,Y,RetType), !, eval(Eq,RetType,Depth,Self,X,XX),evals_to(XX,Y). -eval(_Expander,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. +eval(_Eq,_RetType,_Dpth,_Slf,X,Y):- var(X),!,Y=X. eval(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], number(X),!, do_expander(Eq,RetType,X,YY),Y=[YY]. @@ -113,11 +113,11 @@ w_indent(Depth,Goal):- - \+ \+ mnotrace(ignore((( + \+ \+ notrace(ignore((( format('~N'), setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). indentq(Depth,Term):- - \+ \+ mnotrace(ignore((( + \+ \+ notrace(ignore((( format('~N'), setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), format('~N')))))). @@ -127,7 +127,7 @@ indentq(DR,EX,AR,Term):- \+ \+ color_g_mesg('#2f2f2f', - mnotrace(ignore((( format('~N;'), + notrace(ignore((( format('~N;'), format('~` t~d~5|:', [EX]), format('~` t~d~8|', [DR]), forall(between(1,DR,_),write(' |')),write('-'),write(AR),with_indents(false,write_src(Term)), @@ -175,8 +175,8 @@ -eval_00(_Expander,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). -eval_00(_Expander,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. +eval_00(_Eq,_RetType,Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). +eval_00(_Eq,_RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. eval_00(Eq,RetType,Depth,Self,X,YO):- Depth2 is Depth-1, copy_term(X, XX), @@ -187,6 +187,28 @@ + + + + + + + + + + + + + + + + + + + + + + %eval_11(Eq,RetType,_Dpth,_Slf,X,Y):- self_eval(X),!,Y=X. eval_11(Eq,RetType,Depth,Self,X,Y):- \+ is_debugging((eval)),!, D1 is Depth-1, @@ -206,7 +228,7 @@ call_cleanup(( eval_00(Eq,RetType,D1,Self,X,Y), notrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), - mnotrace(ignore(((Y\=@=X,if_t(EX<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret))))))))), + notrace(ignore(((Y\=@=X,if_t(EX<10,if_trace((eval),indentq(Depth,'<--'(EX,Ret))))))))), (Ret\=@=retval(fail)->true;(rtrace(eval_00(Eq,RetType,D1,Self,X,Y)),fail)). @@ -326,7 +348,7 @@ ['assertEqual',X,Y], (bagof_eval(Eq,RetType,Depth,Self,X,XX), bagof_eval(Eq,RetType,Depth,Self,Y,YY)), equal_enough_for_test(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,[expected(_)],YY]). + (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). eval_20(Eq,RetType,Depth,Self,['assertNotEqual',X,Y],RetVal):- !, loonit_assert_source_tf( @@ -358,10 +380,6 @@ sort_result(Res,Res). unify_enough(L,L). -%unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). -%unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). -%unify_enough(C,L):- \+ compound(C),!,L=C. -%unify_enough(L,C):- \+ compound(C),!,L=C. unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),unify_lists(CC,LL). %unify_lists(C,L):- \+ compound(C),!,L=C. @@ -509,25 +527,6 @@ eval_20(Eq,RetType,_Dpth,_Slf,['new-space'],Space):- !, 'new-space'(Space),check_returnval(Eq,RetType,Space). - -/* - -metta_atom_iter(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, - (metta_defn(Other,H,B)*->true;(metta_atom(Other,H),B='True')). - -metta_atom_iter(Depth,_,_):- Depth<3,!,fail. -metta_atom_iter(_Dpth,_Slf,[]):-!. -metta_atom_iter(_Dpth,Other,H):- metta_atom(Other,H). -metta_atom_iter(Depth,Other,H):- D2 is Depth -1, metta_defn(Other,H,B),metta_atom_iter(D2,Other,B). -metta_atom_iter(_Dpth,_Slf,[And]):- is_and(And),!. -metta_atom_iter(Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter(D2,Self,X),metta_atom_iter(D2,Self,[And|Y]). -*/ -/* -metta_atom_iter2(_,Self,[=,X,Y]):- metta_defn(Self,X,Y). -metta_atom_iter2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Other,H,B). -metta_atom_iter2(_Dpth,Self,X,Y):- metta_defn(Self,X,Y). %, Y\=='True'. -metta_atom_iter2(_Dpth,Self,X,Y):- metta_atom(Self,[=,X,Y]). %, Y\=='True'. -*/ metta_atom_iter_ref(Other,['=',H,B],Ref):-clause(metta_defn(Other,H,B),true,Ref). metta_atom_iter_ref(Other,H,Ref):-clause(metta_atom(Other,H),true,Ref). @@ -541,68 +540,6 @@ % ================================================================= % Macro: case :- nodebug(metta(case)). -/* -!(assertEqualToResult - (case - (Link $X B) - ( ( (g $Y) - (Link $X $Y)))) ()) -*/ -/* -eval_20(Eq,RetType,Depth,Self,['case',A,CL],Value):- !, -((eval(Depth,Self,A,AA), - if_trace((case),(writeqln('switch'(A)=AA))), - eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value))*->true; -Value=found_none). - -eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- - must_det_ll(into_case_list(1,CL,KVs)), - select_switch(Depth,Self,AA,KVs,Match,Value), - if_trace((case),(writeqln('matched'=Match))), - if_trace((case),(writeqln('result'=Value))), - check_returnval(Value,Eq,RetType). -eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- - select(['%void%',_],CL,Rest), Rest == [],!, Value =[]. -eval_case_result(Eq,RetType,Depth,Self,A,AA,CL,Value):- - select(['%void%',Value],CL,Rest),!. - - -select_switch(Depth,_Self,_A,_Cases,_Match,_Value):- Depth<1,!,fail. -select_switch(Depth,Self,A,Cases,Match,Value):- - Depth2 is Depth -1, - ((if_trace((case),(writeqln('select-1'=A))),select_case(Depth2,Self,A,Cases,Match,Value))*->true; - ((eval_complete_change(Eq,_RetType,Depth2,Self,A,AA),if_trace((case),(writeqln('select-2'=AA))), - select_switch(Depth2,Self, AA,Cases,Match,Value))*->true; - (best_key('%void%',Cases,Match,Value)))). - - select_case(Depth,Self,AA,Cases,Match,Value):- - ((best_key(AA,Cases,Match,Value) *-> true ; - ((maybe_special_keys(Depth,Self,Cases,CasES), best_key(AA,CasES,Match,Value)) *-> true; - (fail)))). - - best_key(AA,Cases,Match,Value):- - ((member(Match-Value,Cases),AA ==Match,must_det_ll(AA = Match))->true; - ((member(Match-Value,Cases),AA=@=Match,must_det_ll(AA = Match))->true; - ((member(Match-Value,Cases), AA=Match))->true; - ((member(Match-Value,Cases),unify_enough(AA,Match))->true))). - - %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. - into_case_list(N,[SV|CL],[S-V|CASES]):- - must_det_ll(is_case(S,SV,V)), - if_trace((case),(format('~N'), writeqln('case'(N)=(S>V)))), - N2 is N+1, - into_case_list(N2,CL,CASES). - into_case_list(_,[],[]). - - is_case(AA,[AA,Value],Value):-!. - is_case(AA,[AA|Value],Value). - - %maybe_special_keys(Depth,Self,[K-V|KVI],[AK-V|KVO]):- fail,eval(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, maybe_special_keys(Depth,Self,KVI,KVO). - maybe_special_keys(Depth,Self,[_|KVI],KVO):- - fail, maybe_special_keys(Depth,Self,KVI,KVO). - maybe_special_keys(_Depth,_Self,[],[]). - -*/ % if there is only a void then always return nothing for each Case eval_20(Eq,_RetType,Depth,Self,['case',A,[[Void,_]]],Res):- @@ -610,13 +547,13 @@ eval(Eq,_UnkRetType,Depth,Self,A,_),!,Res =[]. % if there is nothing for case just treat like a collapse -eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- +eval_20(Eq,_RetType,Depth,Self,['case',A,[]],Empty):- !, %forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), once(eval(Eq,_RetType2,Depth,Self,A,_)), return_empty([],Empty). % Macro: case -eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- +eval_20(Eq,RetType,Depth,Self,['case',A,CL|T],Res):- !, must_det_ll(T==[]), into_case_list(CL,CASES), findall(Key-Value, @@ -644,7 +581,6 @@ ((member(Match-Value,Cases),AA=@=Match)->true; (member(Match-Value,Cases),AA = Match))). - %into_case_list([[C|ASES0]],CASES):- is_list(C),!, into_case_list([C|ASES0],CASES),!. into_case_list(CASES,CASES):- is_list(CASES),!. is_case(AA,[AA,Value],Value):-!. is_case(AA,[AA|Value],Value). @@ -685,7 +621,7 @@ get_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). get_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_sa_p1(P3,E,Arg,SA). eval20_failed(Eq,RetType,Depth,Self, Term, Res):- - mnotrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, + notrace(( get_sa_p1(setarg,ST,Term,P1), % ST\==Term, compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), call(P1,Var))), !, %max_counting(F,20), @@ -700,7 +636,7 @@ sub_sterm1(_ ,[_|_]):-!,fail. sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). eval20_failed_2(Eq,RetType,Depth,Self, Term, Res):- - mnotrace(( get_sa_p1(setarg,ST,Term,P1), + notrace(( get_sa_p1(setarg,ST,Term,P1), compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), call(P1,Var))), !, bagof_eval(Eq,RetType,Depth,Self,List,Var), eval(Eq,RetType,Depth,Self, Term, Res). @@ -713,8 +649,8 @@ % ================================================================= % ================================================================= % ================================================================ -eval_20(_Expander,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. -eval_20(_Expander,_RetType1,Depth,Self,['nop',Expr], Empty):- !, +eval_20(_Eq,_RetType,_Depth,_Self,['nop'], _ ):- !, fail. +eval_20(_Eq,_RetType1,Depth,Self,['nop',Expr], Empty):- !, ignore(eval('=',_RetType2,Depth,Self,Expr,_)), return_empty([], Empty). @@ -722,7 +658,7 @@ forall(eval(Eq,_RetType2,Depth,Self,Expr,_),true), return_empty([],Empty). -eval_20(_Expander,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). +eval_20(_Eq,_RetType1,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). % ================================================================= @@ -771,7 +707,7 @@ -eval_until_unify(_Expander,_RetType,_Dpth,_Slf,X,X):- !. +eval_until_unify(_Eq,_RetType,_Dpth,_Slf,X,X):- !. eval_until_unify(Eq,RetType,Depth,Self,X,Y):- eval_until_eq(Eq,RetType,Depth,Self,X,Y). eval_until_eq(Eq,RetType,_Dpth,_Slf,X,Y):- X=Y,check_returnval(Eq,RetType,Y). @@ -780,7 +716,7 @@ eval_until_eq(Eq,RetType,Depth,Self,X,Y):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. eval_until_eq(Eq,RetType,Depth,Self,Y,X):- \+is_list(Y),!,eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),Y=XX. eval_until_eq(Eq,RetType,Depth,Self,X,Y):- eval_in_steps_some_change(Eq,RetType,Depth,Self,X,XX),eval_until_eq(Eq,RetType,Depth,Self,Y,XX). -eval_until_eq(_Expander,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. +eval_until_eq(_Eq,_RetType,_Dpth,_Slf,X,Y):- length(X,Len), \+ length(Y,Len),!,fail. eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), EX=EY,!, maplist(eval_until_eq(Eq,RetType,Depth,Self),RX,RY). eval_until_eq(Eq,RetType,Depth,Self,X,Y):- nth1(N,X,EX,RX), nth1(N,Y,EY,RY), @@ -796,7 +732,7 @@ eval_complete_change(Eq,RetType,Depth,Self,EX,EXX):- eval(Eq,RetType,Depth,Self,EX,EXX), EX \=@= EXX. -eval_in_steps_some_change(_Expander,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. +eval_in_steps_some_change(_Eq,_RetType,_Dpth,_Slf,EX,_):- \+ is_list(EX),!,fail. eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX):- eval_1change(Eq,RetType,Depth,Self,EX,EXX). eval_in_steps_some_change(Eq,RetType,Depth,Self,X,Y):- append(L,[EX|R],X),is_list(EX), eval_in_steps_some_change(Eq,RetType,Depth,Self,EX,EXX), EX\=@=EXX, @@ -880,6 +816,7 @@ eval(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). +call_in_shared_space(G):- call_in_thread(main,G). % eval_20(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, eval(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). @@ -896,18 +833,6 @@ is_nb_state(G):- is_valid_nb_state(G) -> true ; is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). -/* -:- multifile(space_type_method/3). -:- dynamic(space_type_method/3). -space_type_method(is_nb_space,new_space,init_space). -space_type_method(is_nb_space,clear_space,clear_nb_atoms). -space_type_method(is_nb_space,add_atom,add_nb_atom). -space_type_method(is_nb_space,remove_atom,'change-space!'). -space_type_method(is_nb_space,replace_atom,replace_nb_atom). -space_type_method(is_nb_space,atom_count,atom_nb_count). -space_type_method(is_nb_space,get_atoms,'get-space'). -space_type_method(is_nb_space,atom_iter,atom_nb_iter). -*/ :- multifile(state_type_method/3). :- dynamic(state_type_method/3). @@ -934,13 +859,13 @@ % Find the original name of a given state state_original_name(State, Name) :- is_registered_state(Name), - nb_current(Name, State). + call_in_shared_space(nb_current(Name, State)). % Register and initialize a new state init_state(Name) :- State = 'State'(_,_), asserta(is_registered_state(Name)), - nb_setval(Name, State). + call_in_shared_space(nb_setval(Name, State)). % Change a value in a state 'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- @@ -1091,7 +1016,7 @@ finish_eval(_Dpth,_Slf,T,TT):- var(T),!,TT=T. finish_eval(_Dpth,_Slf,[],[]):-!. -%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. +%finish_eval(_Dpth,_Slf,[F|LESS],Res):- once(eval_selfless([F|LESS],Res)),notrace([F|LESS]\==Res),!. %finish_eval(Depth,Self,[V|Nil],[O]):- Nil==[], once(eval(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. finish_eval(Depth,Self,[H|T],[HH|TT]):- !, eval(Depth,Self,H,HH), @@ -1107,20 +1032,15 @@ % Kills zero arity functions eval_20(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,eval(Eq,RetType,Depth,Self,X,Y). -/* -into_values(List,Many):- List==[],!,Many=[]. -into_values([X|List],Many):- List==[],is_list(X),!,Many=X. -into_values(Many,Many). -eval_40(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. -*/ + % Macro Functions %eval_20(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. -eval_40(_Expander,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). +eval_40(_Eq,_RetType,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). eval_40(Eq,RetType,Depth,Self,[F|PredDecl],Res):- fail, Depth>1, - mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), + notrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), eval(Eq,RetType,Depth,Self,SSub,Repl), - mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), + notrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), eval(Eq,RetType,Depth,Self,[F|Temp],Res). @@ -1156,15 +1076,15 @@ % user defined function eval_40(Eq,RetType,Depth,Self,[H|PredDecl],Res):- - mnotrace(is_user_defined_head(Self,H)),!, + notrace(is_user_defined_head(Self,H)),!, eval_60(Eq,RetType,Depth,Self,[H|PredDecl],Res). eval_40(Eq,RetType,_Dpth,_Slf,['==',X,Y],Res):- !, suggest_type(RetType,'Bool'), eq_unify(Eq,_SharedType, X, Y, Res). -eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. -eq_unify(_Expander,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf(X=:=Y,TF),!. +eq_unify(_Eq,_SharedType, X, Y, TF):- as_tf( '#='(X,Y),TF),!. eq_unify( Eq, SharedType, X, Y, TF):- as_tf(eval_until_unify(Eq,SharedType, X, Y), TF). @@ -1204,15 +1124,15 @@ % ================================================================= % ================================================================= % ================================================================= -eval_80(_Expander,_RetType,_Dpth,_Slf,LESS,Res):- - notrace((ground(LESS),once((eval_selfless(LESS,Res),mnotrace(LESS\==Res))))),!. +eval_80(_Eq,_RetType,_Dpth,_Slf,LESS,Res):- + notrace((ground(LESS),once((eval_selfless(LESS,Res),notrace(LESS\==Res))))),!. % predicate inherited by system eval_80(Eq,RetType,_Depth,_Self,[AE|More],TF):- length(More,Len), is_syspred(AE,Len,Pred), - %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, %adjust_args(Depth,Self,AE,More,Adjusted), More = Adjusted, catch_warn(efbug(show_call,eval_call(apply(Pred,Adjusted),TF))), @@ -1234,7 +1154,7 @@ eval_80(Eq,RetType,_Depth,_Self,[AE|More],Res):- length([AE|More],Len), is_syspred(AE,Len,Pred), - %mnotrace( \+ is_user_defined_goal(Self,[AE|More])),!, + %notrace( \+ is_user_defined_goal(Self,[AE|More])),!, %adjust_args(Depth,Self,AE,More,Adjusted),!, More = Adjusted, append(Adjusted,[Res],Args),!, @@ -1274,80 +1194,13 @@ eval_selfless(['<=',X,Y],TF):-!,as_tf(X='). -is_special_op('let'). -is_special_op('let*'). -is_special_op('if'). -is_special_op('rtrace'). -is_special_op('or'). -is_special_op('and'). -is_special_op('not'). -is_special_op('match'). -is_special_op('call'). -is_special_op('let'). -is_special_op('nop'). -is_special_op('assertEqual'). -is_special_op('assertEqualToResult'). - -is_metta_builtin(Special):- is_special_op(Special). -is_metta_builtin('=='). -is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). -is_metta_builtin('println!'). -is_metta_builtin('transfer!'). -is_metta_builtin('collapse'). -is_metta_builtin('superpose'). -is_metta_builtin('+'). -is_metta_builtin('-'). -is_metta_builtin('*'). -is_metta_builtin('/'). -is_metta_builtin('%'). -is_metta_builtin('=='). -is_metta_builtin('<'). -is_metta_builtin('>'). -is_metta_builtin('all'). -is_metta_builtin('import!'). -is_metta_builtin('pragma!'). - -*/ % ================================================================= % ================================================================= % ================================================================= @@ -1357,7 +1210,8 @@ % ================================================================= eval_60(Eq,RetType,Depth,Self,H,B):- - (eval_64(Eq,RetType,Depth,Self,H,B)*->true;eval_67(Eq,RetType,Depth,Self,H,B)). + (eval_64(Eq,RetType,Depth,Self,H,B)*->true; + eval_67(Eq,RetType,Depth,Self,H,B)). %eval_64(Eq,_RetType,_Dpth,Self,H,B):- Eq='=',!, metta_defn(Self,H,B). @@ -1379,13 +1233,13 @@ % Has argument that is headed by the same function eval_67(Eq,RetType,Depth,Self,[H1|Args],Res):- - mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, + notrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, eval(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), - mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), + notrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), eval_60(Eq,RetType,Depth,Self,[H1|NewArgs],Res). eval_67(Eq,RetType,Depth,Self,[[H|Start]|T1],Y):- - mnotrace((is_user_defined_head_f(Self,H),is_list(Start))), + notrace((is_user_defined_head_f(Self,H),is_list(Start))), metta_defn(Self,[H|Start],Left), eval(Eq,RetType,Depth,Self,[Left|T1],Y). @@ -1393,47 +1247,11 @@ eval_67(Eq,RetType,Depth,Self,[F|PredDecl],Res):- Depth>1, quietly(sub_sterm1(SSub,PredDecl)), - mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), + notrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), eval(Eq,RetType,Depth,Self,SSub,Repl), - mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), + notrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), eval_60(Eq,RetType,Depth,Self,[F|Temp],Res). -%eval_67(Eq,RetType,Depth,Self,X,Y):- (eval_68(Eq,RetType,Depth,Self,X,Y)*->true;metta_atom_iter(Depth,Self,[=,X,Y])). -/* -eval_67_fail(Depth,Self,PredDecl,Res):- fail, - ((term_variables(PredDecl,Vars), - (metta_atom(Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); - (eval(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), - PredDecl\=@=Res. -*/ - -%eval_68(Eq,RetType,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Self,H) ), !,fail. -%eval_68(Eq,RetType,_Dpth,Self,[H|T1],Y):- metta_defn(Self,[H|T1],Y). -%eval_68(Eq,RetType,_Dpth,Self,[H|T1],'True'):- metta_atom(Self,[H|T1]). -%eval_68(Eq,RetType,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Self,Left,Y). - - -%eval_6(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, -% metta_defn(Self,['ift',R,Then],Become),eval(Eq,RetType,Depth,Self,CR,R),eval(Eq,RetType,Depth,Self,Then,_True),eval(Eq,RetType,Depth,Self,Become,RO). - - -%not_compound(Term):- \+ is_list(Term),!. -%eval_40(Eq,RetType,Depth,Self,Term,Res):- maplist(not_compound,Term),!,eval_645(Depth,Self,Term,Res). - - -% function inherited by system -/* -eval_80(Eq,RetType,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), - maplist(eval(Eq,ArgTypes,Depth,Self),X,Y),!, - eval_85(Depth,Self,[F|Y],FY). - -eval_80(Eq,RetType,Depth,Self,FX,FY):- eval_85(Depth,Self,FX,FY). - -eval_85(Depth,Self,[AE|More],TF):- length(More,Len), - (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;eval_86(Depth,Self,[AE|More],TF). -eval_86(_Dpth,_Slf,[AE|More],TF):- length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). -*/ -%eval_80(Eq,RetType,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,eval(Eq,RetType,Depth,Self,[F2|X2],Y2),eval(Eq,RetType,Depth,Self,X1,Y1). % ================================================================= @@ -1450,7 +1268,7 @@ %bagof_eval(Eq,RetType,Depth,Self,X,S):- bagof(E,eval_ne(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. -bagof_eval(_Expander,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. +bagof_eval(_Eq,_RetType,_Dpth,_Slf,X,L):- typed_list(X,_Type,L),!. bagof_eval(Eq,RetType,Depth,Self,X,L):- findall(E,eval_ne(Eq,RetType,Depth,Self,X,E),L). @@ -1464,8 +1282,3 @@ - - - - - diff --git a/metta_vspace/pyswip_lng/metta_interp.pl b/metta_vspace/pyswip_lng/metta_interp.pl deleted file mode 100755 index 2fd07b96..00000000 --- a/metta_vspace/pyswip_lng/metta_interp.pl +++ /dev/null @@ -1,2099 +0,0 @@ -:- encoding(iso_latin_1). -:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). -is_compiling:- current_prolog_flag(os_argv,ArgV),member(E,ArgV), - (E==qcompile_mettalog;E==qsave_program),!. -is_compiled:- current_prolog_flag(os_argv,ArgV), member('-x',ArgV),!. -is_compiled:- current_prolog_flag(os_argv,ArgV),\+ member('swipl',ArgV),!. -is_converting:- nb_current('convert','True'),!. -is_converting:- current_prolog_flag(os_argv,ArgV), member('--convert',ArgV),!. -show_os_argv:- current_prolog_flag(os_argv,ArgV),write('; libswipl: '),writeln(ArgV). -is_pyswip:- current_prolog_flag(os_argv,ArgV),member( './',ArgV). -:- multifile(is_metta_data_functor/1). -:- dynamic(is_metta_data_functor/1). -:- multifile(is_nb_space/1). -:- dynamic(is_nb_space/1). -%:- '$set_source_module'('user'). -:- set_stream(user_input,tty(true)). -:- use_module(library(readline)). -%:- use_module(library(editline)). -:- use_module(library(filesex)). -:- use_module(library(shell)). -%:- use_module(library(tabling)). -:- use_module(library(system)). -:- ensure_loaded(metta_compiler). -:- ensure_loaded(metta_printer). -:- ensure_loaded(metta_convert). -%:- ensure_loaded(metta_types). -:- ensure_loaded(metta_data). -:- ensure_loaded(metta_space). -:- ensure_loaded(metta_eval). -:- ensure_loaded(metta_server). -:- ensure_loaded(flybase_main). -:- set_stream(user_input,tty(true)). -:- set_prolog_flag(encoding,iso_latin_1). -:- set_prolog_flag(encoding,utf8). -%:- set_prolog_flag(encoding,octet). -/* -Now PASSING NARS.TEC:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip\metta_interp.pl -C:\opt\logicmoo_workspace\packs_sys\logicmoo_opencog\MeTTa\vspace-metta\metta_vspace\pyswip1\metta_interp.pl -STS1.01) -Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.08) -Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.14) -Now PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.15) -Now PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.15) -Now PASSING TEST-SCRIPTS.E2-STATES.08) -PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.02) -PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.07) -PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.09) -PASSING TEST-SCRIPTS.B5-TYPES-PRELIM.11) -PASSING TEST-SCRIPTS.C1-GROUNDED-BASIC.14) -PASSING TEST-SCRIPTS.E2-STATES.07) ------------------------------------------ -FAILING TEST-SCRIPTS.D5-AUTO-TYPES.01) -Now FAILING TEST-SCRIPTS.00-LANG-CASE.03) -Now FAILING TEST-SCRIPTS.B5-TYPES-PRELIM.19) -Now FAILING TEST-SCRIPTS.C1-GROUNDED-BASIC.20) - -*/ - - -%option_value_def('repl',auto). -option_value_def('prolog',false). -option_value_def('compile',false). -option_value_def('table',false). -option_value_def(no_repeats,false). -option_value_def('time',true). -option_value_def('exec',true). -option_value_def('html',false). -option_value_def('python',false). -%option_value_def('halt',false). -option_value_def('doing_repl',false). -option_value_def('test-retval',false). -option_value_def('trace-length',100). -option_value_def('stack-max',100). -option_value_def('trace-on-overtime',20.0). -option_value_def('trace-on-overflow',false). -option_value_def('exeout','./Sav.godlike.MeTTaLog'). - - - -option_value_def('trace-on-error',true). -%option_value_def('trace-on-load',false). -option_value_def('trace-on-exec',true). -option_value_def('trace-on-eval',true). -option_value_def('trace-on-fail',false). -option_value_def('trace-on-pass',false). - - - - -set_is_unit_test(TF):- - forall(option_value_def(A,B),set_option_value(A,B)), - set_option_value('trace-on-pass',false), - set_option_value('trace-on-fail',false), - if_t(TF,set_option_value('exec',rtrace)), - if_t(TF,set_option_value('eval',rtrace)), - set_option_value('trace-on-load',TF), - set_option_value('trace-on-exec',TF), - set_option_value('trace-on-eval',TF), - - !. - -:- set_is_unit_test(false). - -trace_on_fail:- option_value('trace-on-fail',true). -trace_on_overflow:- option_value('trace-on-overflow',true). -trace_on_pass:- option_value('trace-on-pass',true). -doing_repl:- option_value('doing_repl',true). -if_repl(Goal):- doing_repl->call(Goal);true. - -show_options_values:- - forall((nb_current(N,V),\+((atom(N),atom_concat('$',_,N)))),write_src_nl(['pragma!',N,V])). - -any_floats(S):- member(E,S),float(E),!. - -% ============================ -% %%%% Arithmetic Operations -% ============================ -%:- use_module(library(clpfd)). -:- use_module(library(clpq)). -%:- use_module(library(clpr)). - -% Addition -%'+'(Addend1, Addend2, Sum):- \+ any_floats([Addend1, Addend2, Sum]),!,Sum #= Addend1+Addend2 . -'+'(Addend1, Addend2, Sum):- notrace(catch_err(plus(Addend1, Addend2, Sum),_,fail)),!. -'+'(Addend1, Addend2, Sum):- {Sum = Addend1+Addend2}. -% Subtraction -'-'(Sum, Addend1, Addend2):- '+'(Addend1, Addend2, Sum). - -% Multiplication -'*'(Factor1, Factor2, Product):- {Product = Factor1*Factor2}. -% Division -'/'(Dividend, Divisor, Quotient):- {Dividend = Quotient * Divisor}. -% Modulus -'mod'(Dividend, Divisor, Remainder):- {Remainder = Dividend mod Divisor}. -% Exponentiation -'exp'(Base, Exponent, Result):- eval_H(['exp', Base, Exponent], Result). -% Square Root -'sqrt'(Number, Root):- eval_H(['sqrt', Number], Root). - -% ============================ -% %%%% List Operations -% ============================ -% Retrieve Head of the List -'car-atom'(List, Head):- eval_H(['car-atom', List], Head). -% Retrieve Tail of the List -'cdr-atom'(List, Tail):- eval_H(['cdr-atom', List], Tail). -% Construct a List -'Cons'(Element, List, 'Cons'(Element, List)):- !. -% Collapse List -'collapse'(List, CollapsedList):- eval_H(['collapse', List], CollapsedList). -% Count Elements in List -'CountElement'(List, Count):- eval_H(['CountElement', List], Count). -% Find Length of List -%'length'(List, Length):- eval_H(['length', List], Length). - -% ============================ -% %%%% Nondet Opteration -% ============================ -% Superpose a List -'superpose'(List, SuperposedList):- eval_H(['superpose', List], SuperposedList). - -% ============================ -% %%%% Testing -% ============================ - -% `assertEqual` Predicate -% This predicate is used for asserting that the Expected value is equal to the Actual value. -% Expected: The value that is expected. -% Actual: The value that is being checked against the Expected value. -% Result: The result of the evaluation of the equality. -% Example: `assertEqual(5, 5, Result).` would succeed, setting Result to true (or some success indicator). -%'assertEqual'(Expected, Actual, Result):- use_metta_compiler,!,as_tf((Expected=Actual),Result). -'assertEqual'(Expected, Actual, Result):- ignore(Expected=Actual), eval_H(['assertEqual', Expected, Actual], Result). - -% `assertEqualToResult` Predicate -% This predicate asserts that the Expected value is equal to the Result of evaluating Actual. -% Expected: The value that is expected. -% Actual: The expression whose evaluation is being checked against the Expected value. -% Result: The result of the evaluation of the equality. -% Example: If Actual evaluates to the Expected value, this would succeed, setting Result to true (or some success indicator). -'assertEqualToResult'(Expected, Actual, Result):- eval_H(['assertEqualToResult', Expected, Actual], Result). - -% `assertFalse` Predicate -% This predicate is used to assert that the evaluation of EvalThis is false. -% EvalThis: The expression that is being evaluated and checked for falsehood. -% Result: The result of the evaluation. -% Example: `assertFalse((1 > 2), Result).` would succeed, setting Result to true (or some success indicator), as 1 > 2 is false. -'assertFalse'(EvalThis, Result):- eval_H(['assertFalse', EvalThis], Result). - -% `assertNotEqual` Predicate -% This predicate asserts that the Expected value is not equal to the Actual value. -% Expected: The value that is expected not to match the Actual value. -% Actual: The value that is being checked against the Expected value. -% Result: The result of the evaluation of the inequality. -% Example: `assertNotEqual(5, 6, Result).` would succeed, setting Result to true (or some success indicator). -'assertNotEqual'(Expected, Actual, Result):- eval_H(['assertNotEqual', Expected, Actual], Result). - -% `assertTrue` Predicate -% This predicate is used to assert that the evaluation of EvalThis is true. -% EvalThis: The expression that is being evaluated and checked for truth. -% Result: The result of the evaluation. -% Example: `assertTrue((2 > 1), Result).` would succeed, setting Result to true (or some success indicator), as 2 > 1 is true. -'assertTrue'(EvalThis, Result):- eval_H(['assertTrue', EvalThis], Result). - -% `rtrace` Predicate -% This predicate is likely used for debugging; possibly for tracing the evaluation of Condition. -% Condition: The condition/expression being traced. -% EvalResult: The result of the evaluation of Condition. -% Example: `rtrace((2 + 2), EvalResult).` would trace the evaluation of 2 + 2 and store its result in EvalResult. -'rtrace'(Condition, EvalResult):- eval_H(['rtrace', Condition], EvalResult). - -% `time` Predicate -% This predicate is used to measure the time taken to evaluate EvalThis. -% EvalThis: The expression whose evaluation time is being measured. -% EvalResult: The result of the evaluation of EvalThis. -% Example: `time((factorial(5)), EvalResult).` would measure the time taken to evaluate factorial(5) and store its result in EvalResult. -'time'(EvalThis, EvalResult):- eval_H(['time', EvalThis], EvalResult). - -% ============================ -% %%%% Debugging, Printing and Utility Operations -% ============================ -% REPL Evaluation -'repl!'(EvalResult):- eval_H(['repl!'], EvalResult). -% Condition Evaluation -'!'(Condition, EvalResult):- eval_H(['!', Condition], EvalResult). -% Import File into Environment -'import!'(Environment, Filename, Namespace):- eval_H(['import!', Environment, Filename], Namespace). -% Evaluate Expression with Pragma -'pragma!'(Environment, Expression, EvalValue):- eval_H(['pragma!', Environment, Expression], EvalValue). -% Print Message to Console -'print'(Message, EvalResult):- eval_H(['print', Message], EvalResult). -% No Operation, Returns EvalResult unchanged -'nop'(Expression, EvalResult):- eval_H(['nop', Expression], EvalResult). - -% ============================ -% %%%% Variable Bindings -% ============================ -% Bind Variables -'bind!'(Environment, Variable, Value):- eval_H(['bind!', Environment, Variable], Value). -% Let binding for single variable -'let'(Variable, Expression, Body, Result):- eval_H(['let', Variable, Expression, Body], Result). -% Sequential let binding -'let*'(Bindings, Body, Result):- eval_H(['let*', Bindings, Body], Result). - -% ============================ -% %%%% Reflection -% ============================ -% Get Type of Value -'get-type'(Value, Type):- eval_H(['get-type', Value], Type). - - -metta_cmd_args(Rest):- current_prolog_flag(late_metta_opts,Rest),!. -metta_cmd_args(Rest):- current_prolog_flag(argv,P),append(_,['--'|Rest],P),!. -metta_cmd_args(Rest):- current_prolog_flag(os_argv,P),append(_,['--'|Rest],P),!. -metta_cmd_args(Rest):- current_prolog_flag(argv,Rest). -run_cmd_args:- metta_cmd_args(Rest), !, do_cmdline_load_metta('&self',Rest). - - -metta_make_hook:- loonit_reset, option_value(not_a_reload,true),!. -metta_make_hook:- - metta_cmd_args(Rest), into_reload_options(Rest,Reload), cmdline_load_metta('&self',Reload). - -:- multifile(prolog:make_hook/2). -:- dynamic(prolog:make_hook/2). -prolog:make_hook(after, _Some):- nop( metta_make_hook). - -into_reload_options(Reload,Reload). - -is_cmd_option(Opt,M, TF):- atom(M), - atom_concat('-',Opt,Flag), - atom_contains(M,Flag),!, - get_flag_value(M,FV), - TF=FV. - -get_flag_value(M,V):- atomic_list_concat([_,V],'=',M),!. -get_flag_value(M,false):- atom_contains(M,'-no'),!. -get_flag_value(_,true). - - -:- ignore((( - \+ prolog_load_context(reloading,true), - nop((forall(option_value_def(Opt,Default),set_option_value(Opt,Default))))))). - -%process_option_value_def:- \+ option_value('python',false), skip(ensure_loaded(metta_python)). -process_option_value_def:- option_value('python',load), ensure_loaded(metta_vspace/pyswip/metta_python). -process_option_value_def. - - -process_late_opts:- forall(process_option_value_def,true). -process_late_opts:- once(option_value('html',true)), set_is_unit_test(true). -%process_late_opts:- current_prolog_flag(os_argv,[_]),!,ignore(repl). -%process_late_opts:- halt(7). -process_late_opts. - -%do_cmdline_load_metta(_Slf,Rest):- select('--prolog',Rest,RRest),!, -% set_option_value('prolog',true), -% set_prolog_flag(late_metta_opts,RRest). -do_cmdline_load_metta(Self,Rest):- - set_prolog_flag(late_metta_opts,Rest), - forall(process_option_value_def,true), - cmdline_load_metta(Self,Rest),!, - forall(process_late_opts,true). - -load_metta_file(Self,Filemask):- atom_concat(_,'.metta',Filemask),!, load_metta(Self,Filemask). -load_metta_file(_Slf,Filemask):- load_flybase(Filemask). - -catch_abort(From,Goal):- - catch_abort(From,Goal,Goal). -catch_abort(From,TermV,Goal):- - catch(Goal,'$aborted',fbug(aborted(From,TermV))). -% done -cmdline_load_metta(_,Nil):- Nil==[],!. - -cmdline_load_metta(Self,['--repl'|Rest]):- !, repl,cmdline_load_metta(Self,Rest). -cmdline_load_metta(Self,[Filemask|Rest]):- atom(Filemask), \+ atom_concat('-',_,Filemask), - Src=user:load_metta_file(Self,Filemask), - catch_abort(Src, - (must_det_ll((nl,write('; '),write_src(Src),nl,catch_red(Src),!,flush_output)))), - cmdline_load_metta(Self,Rest). - -cmdline_load_metta(Self,['-g',M|Rest]):- - catch_abort(['-g',M],((read_term_from_atom(M, Term, []),ignore(call(Term))))), - cmdline_load_metta(Self,Rest). - -cmdline_load_metta(Self,['-G',Str|Rest]):- !, - current_self(Self), - catch_abort(['-G',Str],ignore(call_sexpr('!',Self,Str,_S,_Out))), - cmdline_load_metta(Self,Rest). - -cmdline_load_metta(Self,[M|Rest]):- - m_opt(M,Opt),!, - is_cmd_option(Opt,M,TF),!, - fbug(is_cmd_option(Opt,M,TF)), !, set_option_value(Opt,TF), - set_tty_color_term(true), - cmdline_load_metta(Self,Rest). - -cmdline_load_metta(Self,[M|Rest]):- - format('~N'),write('; unused '), write_src(M), nl, !, - cmdline_load_metta(Self,Rest). - - -set_tty_color_term(TF):- - current_output(X),set_stream(X,tty(TF)), - set_stream(current_output,tty(TF)), - set_prolog_flag(color_term ,TF). - -m_opt(M,Opt):- - m_opt0(M,Opt1), - m_opt1(Opt1,Opt). - -m_opt1(Opt1,Opt):- atomic_list_concat([Opt|_],'=',Opt1). - -m_opt0(M,Opt):- atom_concat('--no-',Opt,M),!. -m_opt0(M,Opt):- atom_concat('--',Opt,M),!. -m_opt0(M,Opt):- atom_concat('-',Opt,M),!. - -:- set_prolog_flag(occurs_check,true). - -start_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. -start_html_of(_Filename):-!. -start_html_of(_Filename):- - must_det_ll(( - S = _, - %retractall(metta_defn(Eq,S,_,_)), - nop(retractall(metta_type(S,_,_))), - %retractall(get_metta_atom(Eq,S,_,_,_)), - loonit_reset, - tee_file(TEE_FILE), - sformat(S,'cat /dev/null > "~w"',[TEE_FILE]), - - writeln(doing(S)), - ignore(shell(S)))). - -save_html_of(_Filename):- \+ tee_file(_TEE_FILE),!. -save_html_of(_):- \+ has_loonit_results, \+ option_value('html',true). -save_html_of(_):- !, writeln('
    Return to Summaries
    '). -save_html_of(_Filename):-!. -save_html_of(Filename):- - must_det_ll(( - file_name_extension(Base,_,Filename), - file_name_extension(Base,'metta.html',HtmlFilename), - loonit_reset, - tee_file(TEE_FILE), - writeln('
    Return to Summaries
    '), - sformat(S,'ansi2html -u < "~w" > "~w" ',[TEE_FILE,HtmlFilename]), - writeln(doing(S)), - ignore(shell(S)))). - -tee_file(TEE_FILE):- getenv('TEE_FILE',TEE_FILE),!. -tee_file(TEE_FILE):- metta_dir(Dir),directory_file_path(Dir,'TEE.ansi',TEE_FILE),!. -metta_dir(Dir):- getenv('METTA_DIR',Dir),!. - -load_metta(Filename):- - %clear_spaces, - load_metta('&self',Filename). - - -load_metta(_Self,Filename):- Filename=='--repl',!,repl. -load_metta(Self,Filename):- - (\+ atom(Filename); \+ exists_file(Filename)),!, - with_wild_path(load_metta(Self),Filename),!,loonit_report. -load_metta(Self,RelFilename):- - atom(RelFilename), - exists_file(RelFilename),!, - absolute_file_name(RelFilename,Filename), - track_load_into_file(Filename, - include_metta(Self,RelFilename)). - -include_metta(Self,Filename):- - (\+ atom(Filename); \+ exists_file(Filename)),!, - must_det_ll(with_wild_path(include_metta(Self),Filename)),!. - -include_metta(Self,RelFilename):- - must_det_ll(( - atom(RelFilename), - exists_file(RelFilename),!, - absolute_file_name(RelFilename,Filename), - must_det_ll((setup_call_cleanup(open(Filename,read,In, [encoding(utf8)]), - ((directory_file_path(Directory, _, Filename), - assert(metta_file(Self,Filename,Directory)), - with_cwd(Directory, - must_det_ll( load_metta_file_stream(Filename,Self,In))))),close(In)))))). - -load_metta_file_stream(Filename,Self,In):- - once((is_file_stream_and_size(In, Size) , Size>102400) -> P2 = read_sform2 ; P2 = read_metta2), - with_option(loading_file,Filename, - %current_exec_file(Filename), - ((must_det_ll(( - set_exec_num(Filename,1), - load_answer_file(Filename), - set_exec_num(Filename,0))), - load_metta_file_stream_fast(Size,P2,Filename,Self,In)))). - - - -accept_line(_Self,end_of_file):-!. -accept_line(Self,I):- normalize_space(string(Str),I),!,accept_line2(Self,Str),!. - -accept_line2(_Self,S):- string_concat(";",_,S),!,writeln(S). -accept_line2(Self,S):- string_concat('(',RS,S),string_concat(M,')',RS),!, - atomic_list_concat([F|LL],' ',M),PL =..[F,Self|LL],assert(PL),!,flag(next_assert,X,X+1), - if_t((0 is X mod 10_000_000),(writeln(X=PL),statistics)). -accept_line2(Self,S):- fbug(accept_line2(Self,S)),!. - -load_metta_file_stream_fast(_Size,_P2,Filename,Self,S):- atomic_list_concat([_,_,_|_],'.',Filename), - \+ option_value(html,true), - atomic(S),is_stream(S),stream_property(S,input),!, - repeat, - read_line_to_string(S,I), - accept_line(Self,I), - I==end_of_file,!. - -load_metta_file_stream_fast(_Size,P2,Filename,Self,In):- - repeat, - current_read_mode(Mode), - call(P2, In,Expr), %write_src(read_metta=Expr),nl, - once((((do_metta(file(Filename),Mode,Self,Expr,_O)))->true; pp_m(unknown_do_metta(file(Filename),Mode,Self,Expr)))), - flush_output, - at_end_of_stream(In),!. - -clear_spaces:- clear_space(_). -clear_space(S):- - %retractall(metta_defn(_,S,_,_)), - nop(retractall(metta_type(S,_,_))), - retractall(asserted_metta_atom(S,_)). - -dcall(G):- call(G). - -lsm:- lsm(_). -lsm(S):- - listing(metta_file(S,_,_)), - %listing(mdyn_type(S,_,_,_)), - forall(mdyn_type(S,_,_,Src),color_g_mesg('#22a5ff',write_f_src(Src))), - nl,nl,nl, - forall(mdyn_defn(S,_,_,Src),color_g_mesg('#00ffa5',write_f_src(Src))), - %listing(mdyn_defn(S,_,_,_)), - !. - -write_f_src(H,B):- H=@=B,!,write_f_src(H). -write_f_src(H,B):- write_f_src(['=',H,B]). - -hb_f(HB,ST):- sub_term(ST,HB),(atom(ST),ST\==(=),ST\==(:)),!. -write_f_src(HB):- - hb_f(HB,ST), - option_else(current_def,CST,[]),!, - (CST == ST -> true ; (nl,nl,nl,set_option_value(current_def,ST))), - write_src(HB). - - - -debug_only(G):- notrace(ignore(catch_warn(G))). -debug_only(_What,G):- ignore((fail,notrace(catch_warn(G)))). - - -'True':- true. -'False':- fail. - - -'metta_learner::vspace-main':- repl. - -into_underscores(D,U):- atom(D),!,atomic_list_concat(L,'-',D),atomic_list_concat(L,'_',U). -into_underscores(D,U):- descend_and_transform(into_underscores,D,U),!. - -into_hyphens(D,U):- atom(D),!,atomic_list_concat(L,'_',D),atomic_list_concat(L,'-',U). -into_hyphens(D,U):- descend_and_transform(into_hyphens,D,U),!. - -descend_and_transform(P2, Input, Transformed) :- - ( var(Input) - -> Transformed = Input % Keep variables as they are - ; compound(Input) - -> (compound_name_arguments(Input, Functor, Args), - maplist(descend_and_transform(P2), Args, TransformedArgs), - compound_name_arguments(Transformed, Functor, TransformedArgs)) - ; (atom(Input),call(P2,Input,Transformed)) - -> true % Transform atoms using xform_atom/2 - ; Transformed = Input % Keep other non-compound terms as they are - ). - -/* -is_syspred(H,Len,Pred):- notrace(is_syspred0(H,Len,Pred)). -is_syspred0(H,_Ln,_Prd):- \+ atom(H),!,fail. -is_syspred0(H,_Ln,_Prd):- upcase_atom(H,U),downcase_atom(H,U),!,fail. -is_syspred0(H,Len,Pred):- current_predicate(H/Len),!,Pred=H. -is_syspred0(H,Len,Pred):- atom_concat(Mid,'!',H), H\==Mid, is_syspred0(Mid,Len,Pred),!. -is_syspred0(H,Len,Pred):- into_underscores(H,Mid), H\==Mid, is_syspred0(Mid,Len,Pred),!. - -fn_append(List,X,Call):- - fn_append1(List,X,ListX), - into_fp(ListX,Call). - - - - - -is_metta_data_functor(Eq,F):- - current_self(Self),is_metta_data_functor(Eq,Self,F). - -is_metta_data_functor(Eq,Other,H):- - metta_type(Other,H,_), - \+ get_metta_atom(Eq,Other,[H|_]), - \+ metta_defn(Eq,Other,[H|_],_). -*/ -is_function(F):- atom(F). - -is_False(X):- X\=='True', (is_False1(X)-> true ; (eval_H(X,Y),is_False1(Y))). -is_False1(Y):- (Y==0;Y==[];Y=='False'). - -is_conz(Self):- compound(Self), Self=[_|_]. - -%dont_x(eval_H(Depth,Self,metta_if(A=1,atom_concat(metta_,_,F). -needs_expanded(eval_H(Term,_),Expand):- !,sub_term(Expand,Term),compound(Expand),Expand\=@=Term, - compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). -needs_expanded([A|B],Expand):- sub_term(Expand,[A|B]), compound(Expand), \+ is_conz(Expand), \+ is_ftVar(Expand), needs_expand(Expand). - -fn_append1(eval_H(Term,X),X,eval_H(Term,X)):-!. -fn_append1(Term,X,eval_H(Term,X)). - - -% Check if parentheses are balanced in a list of characters -balanced_parentheses(Chars) :- balanced_parentheses(Chars, 0). -balanced_parentheses([], 0). -balanced_parentheses(['('|T], N) :- N1 is N + 1, balanced_parentheses(T, N1). -balanced_parentheses([')'|T], N) :- N > 0, N1 is N - 1, balanced_parentheses(T, N1). -balanced_parentheses([H|T], N) :- H \= '(', H \= ')', balanced_parentheses(T, N). -% Recursive function to read lines until parentheses are balanced. -repl_read(NewAccumulated, Expr):- - atom_concat(Atom, '.', NewAccumulated), - catch_err((read_term_from_atom(Atom, Term, []), Expr=call(Term)), E, - (write('Syntax error: '), writeq(E), nl, repl_read(Expr))),!. - - -%repl_read(Str, Expr):- ((clause(t_l:s_reader_info(Expr),_,Ref),erase(Ref))). -repl_read("!", '!'):-!. -repl_read("+", '+'):-!. -repl_read(Str,Atom):- atom_string(Atom,Str),metta_interp_mode(Atom,_),!. - -repl_read(Str, Expr):- atom_concat('@',_,Str),!,atom_string(Expr,Str). -repl_read(NewAccumulated, Expr):- - normalize_space(string(Renew),NewAccumulated), Renew \== NewAccumulated, !, - repl_read(Renew, Expr). -%repl_read(NewAccumulated,exec(Expr)):- string_concat("!",Renew,NewAccumulated), !, repl_read(Renew, Expr). -repl_read(NewAccumulated, Expr):- string_chars(NewAccumulated, Chars), - balanced_parentheses(Chars), length(Chars, Len), Len > 0, - parse_sexpr_metta(NewAccumulated, Expr), !, - normalize_space(string(Renew),NewAccumulated), - add_history_string(Renew). -repl_read(Accumulated, Expr) :- read_line_to_string(current_input, Line), repl_read(Accumulated, Line, Expr). - -repl_read(_, end_of_file, end_of_file):- throw(end_of_input). - -repl_read(Accumulated, "", Expr):- !, repl_read(Accumulated, Expr). -repl_read(_Accumulated, Line, Expr):- Line == end_of_file, !, Expr = Line. -repl_read(Accumulated, Line, Expr) :- atomics_to_string([Accumulated," ",Line], NewAccumulated), !, - repl_read(NewAccumulated, Expr). - -repl_read(O2):- clause(t_l:s_reader_info(O2),_,Ref),erase(Ref). -repl_read(Expr) :- repeat, - remove_pending_buffer_codes(_,Was),text_to_string(Was,Str), - repl_read(Str, Expr), - % once(((atom(Expr1),atom_concat('@',_,Expr1), \+ atom_contains(Expr1,"="), repl_read(Expr2)) -> Expr=[Expr1,Expr2] ; Expr1 = Expr)), - % this cutrs the repeat/0 - ((peek_pending_codes(_,Peek),Peek==[])->!;true). - -add_history_string(Str):- notrace(ignore(add_history01(Str))),!. - -add_history_src(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,write_src(Exec))),add_history_string(H)))). - -add_history_pl(Exec):- var(Exec), !. -add_history_pl(eval(_,catch_red(PL),_)):- !,add_history_pl(PL). -add_history_pl(show_failure(PL)):-!,add_history_pl(PL). -add_history_pl(as_tf(PL,_OUT)):-!,add_history_pl(PL). -add_history_pl(Exec):- notrace(ignore((Exec\=[],with_output_to(string(H),with_indents(false,(writeq(Exec),writeln('.')))),add_history_string(H)))). - -%read_metta(In,Expr):- current_input(CI), \+ is_same_streams(CI,In), !, read_sform(In,Expr). -read_metta(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). -read_metta(I,O):- string(I),normalize_space(string(M),I),!,parse_sexpr_metta1(M,O),!. -read_metta(In,Expr):- current_input(In0),In==In0,!, repl_read(Expr). -read_metta(In,Expr):- read_metta1(In,Expr). - -read_metta1(In,Expr):- is_file_stream_and_size(In, Size) , Size>10240,!,read_sform1([],In,Expr). -read_metta1(In,Expr):- read_metta2(In,Expr). - -read_metta2(_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). -read_metta2(In,Expr):- peek_char(In,Char), read_metta2(In,Char,Expr). -read_metta2(In,Char,Expr):- char_type(Char,space),get_char(In,Char),put(Char),!,read_metta2(In,Expr). -read_metta2(In,'!',Expr):- get_char(In,_), !, read_metta2(In,Read1),!,Expr=exec(Read1). -read_metta2(In,';',Expr):- get_char(In,_), !, (maybe_read_pl(In,Expr)-> true ; (read_line_to_string(In,Str),Expr='$COMMENT'(Str,0,0))). -% write_comment(Str),!,read_metta2(In,Expr))),!. -% read_metta2(In,_,Expr):- maybe_read_pl(In,Expr),!. -read_metta2(In,_,Read1):- parse_sexpr_metta(In,Expr),!,must_det_ll(Expr=Read1). - - -% Predicate to check if a stream is a file stream and get its size. -is_file_stream_and_size(Stream, Size) :- - % Check if the stream is associated with a file. - stream_property(Stream, file_name(FileName)), - % Check if the file is accessible and get its size. - exists_file(FileName), - size_file(FileName, Size). - - -maybe_read_pl(In,Expr):- - peek_line(In,Line1), Line1\=='', atom_contains(Line1, '.'),atom_contains(Line1, ':-'), - notrace(((catch_err((read_term_from_atom(Line1, Term, []), Term\==end_of_file, Expr=call(Term)),_, fail),!, - read_term(In, Term, [])))). -peek_line(In,Line1):- peek_string(In, 1024, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. -peek_line(In,Line1):- peek_string(In, 4096, Str), split_string(Str, "\r\n", "\s", [Line1,_|_]),!. - - - - -%read_line_to_sexpr(Stream,UnTyped), -read_sform(Str,F):- string(Str),open_string(Str,S),!,read_sform(S,F). -read_sform(S,F):- - read_sform1([],S,F1), - ( F1\=='!' -> F=F1 ; - (read_sform1([],S,F2), F = exec(F2))). - - -read_sform2(S,F1):- !, read_metta2(S,F1). -read_sform2(S,F1):- read_sform1([],S,F1). - -read_sform1(_,_,O):- clause(t_l:s_reader_info(O),_,Ref),erase(Ref). -read_sform1( AltEnd,Str,F):- string(Str),open_string(Str,S),!,read_sform1( AltEnd,S,F). -read_sform1(_AltEnd,S,F):- at_end_of_stream(S),!,F=end_of_file. -read_sform1( AltEnd,S,M):- get_char(S,C),read_sform3(s, AltEnd,C,S,F), untyped_to_metta(F,M). -%read_sform1( AltEnd,S,F):- profile(parse_sexpr_metta(S,F)). - -read_sform3(_AoS,_AltEnd,C,_,F):- C == end_of_file,!,F=end_of_file. -read_sform3( s, AltEnd,C,S,F):- char_type(C,space),!,read_sform1( AltEnd,S,F). -%read_sform3(AoS,_AltEnd,';',S,'$COMMENT'(F,0,0)):- !, read_line_to_string(S,F). -read_sform3( s, AltEnd,';',S,F):- read_line_to_string(S,_),!,read_sform1( AltEnd,S,F). -read_sform3( s, AltEnd,'!',S,exec(F)):- !,read_sform1( AltEnd,S,F). - -read_sform3(_AoS,_AltEnd,'"',S,Text):- !,must_det_ll(atom_until(S,[],'"',Text)). -read_sform3(_AoS,_AltEnd,'`',S,Text):- !,atom_until(S,[],'`',Text). -read_sform3(_AoS,_AltEnd,'\'',S,Text):- !,atom_until(S,[],'\'',Text). -read_sform3(_AoS,_AltEnd,',',_,','):- !. -read_sform3( s , AltEnd,C,S,F):- read_sform4( AltEnd,C,S,F),!. -read_sform3(_AoS, AltEnd,P,S,Sym):- peek_char(S,Peek),!,read_symbol_or_number( AltEnd,Peek,S,[P],Expr),into_symbol_or_number(Expr,Sym). - -into_symbol_or_number(Expr,Sym):- atom_number(Expr,Sym),!. -into_symbol_or_number(Sym,Sym). - -read_sform4(_AltEnd,B,S,Out):- read_sform5(s,B,S,List,E), c_list(E,List,Out). -c_list(')',List,List). c_list('}',List,['{...}',List]). c_list(']',List,['[...]',List]). - - -read_sform5(AoS,'(',S,List,')'):- !,collect_list_until(AoS,S,')',List),!. -read_sform5(AoS,'{',S,List,'}'):- !,collect_list_until(AoS,S,'}',List),!. -read_sform5(AoS,'[',S,List,']'):- !,collect_list_until(AoS,S,']',List),!. - - -read_symbol_or_number(_AltEnd,Peek,_S,SoFar,Expr):- char_type(Peek,space),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). -read_symbol_or_number(AltEnd,B,S,SoFar,Expr):- read_sform5(AltEnd,B,S,List,E),flatten([List,E],F), append(SoFar,F,NSoFar), - peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). -read_symbol_or_number( AltEnd,Peek,_S,SoFar,Expr):- member(Peek,AltEnd),!,must_det_ll(( atomic_list_concat(SoFar,Expr))). -read_symbol_or_number( AltEnd,_Peek,S,SoFar,Expr):- get_char(S,C),append(SoFar,[C],NSoFar), - peek_char(S,NPeek), read_symbol_or_number(AltEnd,NPeek,S,NSoFar,Expr). - -atom_until(S,SoFar,End,Text):- get_char(S,C),atom_until(S,SoFar,C,End,Text). -atom_until(_,SoFar,C,End,Expr):- C ==End,!,must_det_ll((atomic_list_concat(SoFar,Expr))). -atom_until(S,SoFar,'\\',End,Expr):-get_char(S,C),!,atom_until2(S,SoFar,C,End,Expr). -atom_until(S,SoFar,C,End,Expr):- atom_until2(S,SoFar,C,End,Expr). -atom_until2(S,SoFar,C,End,Expr):- append(SoFar,[C],NSoFar),get_char(S,NC), - atom_until(S,NSoFar,NC,End,Expr). - -collect_list_until(AoS,S,End,List):- get_char(S,C), cont_list(AoS,C,End,S,List). -cont_list(_AoS,End,End,_,[]):- !. -cont_list( AoS,C,End,S,[F|List]):- read_sform3(AoS,[End],C,S,F),!,collect_list_until(AoS,S,End,List). - - - -in2_stream(N1,S1):- integer(N1),!,stream_property(S1,file_no(N1)),!. -in2_stream(N1,S1):- atom(N1),stream_property(S1,alias(N1)),!. -in2_stream(N1,S1):- is_stream(N1),S1=N1,!. -in2_stream(N1,S1):- atom(N1),stream_property(S1,file_name(N1)),!. -is_same_streams(N1,N2):- in2_stream(N1,S1),in2_stream(N2,S2),!,S1==S2. - - - -parse_sexpr_metta(I,O):- string(I),normalize_space(string(M),I),parse_sexpr_metta1(M,O),!. -parse_sexpr_metta(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). - -parse_sexpr_metta1(M,exec(O)):- string_concat('!',I,M),!,parse_sexpr_metta1(I,O). -parse_sexpr_metta1(M,(O)):- string_concat('+',I,M),!,parse_sexpr_metta1(I,O). -parse_sexpr_metta1(I,O):- parse_sexpr_untyped(I,U),trly(untyped_to_metta,U,O). - - -write_comment(_):- silent_loading,!. -write_comment(Cmt):- connlf,format(';;~w~n',[Cmt]). -do_metta_cmt(_,'$COMMENT'(Cmt,_,_)):- write_comment(Cmt),!. -do_metta_cmt(_,'$STRING'(Cmt)):- write_comment(Cmt),!. -do_metta_cmt(Self,[Cmt]):- !, do_metta_cmt(Self, Cmt),!. - - -mlog_sym('@'). - -%untyped_to_metta(I,exec(O)):- compound(I),I=exec(M),!,untyped_to_metta(M,O). -untyped_to_metta(I,O):- - must_det_ll(( - trly(mfix_vars1,I,M), - trly(cons_to_c,M,OM), - trly(cons_to_l,OM,O))). - - -trly(P2,A,B):- once(call(P2,A,M)),A\=@=M,!,trly(P2,M,B). -trly(_,A,A). - -mfix_vars1(I,O):- var(I),!,I=O. -mfix_vars1('$t','$VAR'('T')):-!. -mfix_vars1('$T','$VAR'('T')):-!. -%mfix_vars1(I,O):- I=='T',!,O='True'. -%mfix_vars1(I,O):- I=='F',!,O='False'. -%mfix_vars1(I,O):- is_i_nil(I),!,O=[]. -mfix_vars1(I,O):- I=='true',!,O='True'. -mfix_vars1(I,O):- I=='false',!,O='False'. -mfix_vars1('$STRING'(I),O):- option_value(strings,true),!, mfix_vars1(I,O). -mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),atom_chars(O,M),!. -%mfix_vars1('$STRING'(I),O):- !, mfix_vars1(I,M),name(O,M),!. -mfix_vars1([H|T],O):- H=='[', is_list(T), last(T,L),L==']',append(List,[L],T), !, O = ['[...]',List]. -mfix_vars1([H|T],O):- H=='{', is_list(T), last(T,L),L=='}',append(List,[L],T), !, O = ['{...}',List]. -mfix_vars1('$OBJ'(claz_bracket_vector,List),O):- is_list(List),!, O = ['[...]',List]. -mfix_vars1(I,O):- I = ['[', X, ']'], nonvar(X), !, O = ['[...]',X]. -mfix_vars1(I,O):- I = ['{', X, '}'], nonvar(X), !, O = ['{...}',X]. -mfix_vars1('$OBJ'(claz_bracket_vector,List),Res):- is_list(List),!, append(['['|List],[']'],Res),!. -mfix_vars1(I,O):- I==[Quote, S], Quote==quote,S==s,!, O=is. -mfix_vars1([K,H|T],Cmpd):- atom(K),mlog_sym(K),is_list(T),mfix_vars1([H|T],[HH|TT]),atom(HH),is_list(TT),!, - compound_name_arguments(Cmpd,HH,TT). -%mfix_vars1([H|T],[HH|TT]):- !, mfix_vars1(H,HH),mfix_vars1(T,TT). -mfix_vars1(List,ListO):- is_list(List),!,maplist(mfix_vars1,List,ListO). -mfix_vars1(I,O):- string(I),option_value('string-are-atoms',true),!,atom_string(O,I). - -mfix_vars1(I,O):- compound(I),!,compound_name_arguments(I,F,II),F\=='$VAR',maplist(mfix_vars1,II,OO),!,compound_name_arguments(O,F,OO). -mfix_vars1(I,O):- \+ atom(I),!,I=O. -mfix_vars1(I,'$VAR'(O)):- atom_concat('$',N,I),dvar_name(N,O),!. -mfix_vars1(I,I). - -no_cons_reduce. - -dvar_name(t,'T'):- !. -dvar_name(N,O):- atom(N),atom_number(N,Num),atom_concat('Num',Num,M),!,svar_fixvarname(M,O). -dvar_name(N,O):- number(N),atom_concat('Num',N,M),!,svar_fixvarname(M,O). -dvar_name(N,O):- \+ atom(N),!,format(atom(A),'~w',[N]),dvar_name(A,O). -dvar_name('','__'):-!. % "$" -dvar_name('_','_'):-!. % "$_" -dvar_name(N,O):- svar_fixvarname(N,O),!. -dvar_name(N,O):- must_det_ll((atom_chars(N,Lst),maplist(c2vn,Lst,NList),atomic_list_concat(NList,S),svar_fixvarname(S,O))),!. -c2vn(A,A):- char_type(A,prolog_identifier_continue),!. -c2vn(A,A):- char_type(A,prolog_var_start),!. -c2vn(A,AA):- char_code(A,C),atomic_list_concat(['_C',C,'_'],AA). - -cons_to_l(I,I):- no_cons_reduce,!. -cons_to_l(I,O):- var(I),!,O=I. -cons_to_l(I,O):- is_i_nil(I),!,O=[]. -cons_to_l(I,O):- I=='nil',!,O=[]. -cons_to_l(C,O):- \+ compound(C),!,O=C. -cons_to_l([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_l(H,HH),!,cons_to_l(T,TT). -cons_to_l(List,ListO):- is_list(List),!,maplist(cons_to_l,List,ListO). -cons_to_l(I,I). - -cons_to_c(I,I):- no_cons_reduce,!. -cons_to_c(I,O):- var(I),!,O=I. -cons_to_c(I,O):- is_i_nil(I),!,O=[]. -cons_to_c(I,O):- I=='nil',!,O=[]. -cons_to_c(C,O):- \+ compound(C),!,O=C. -cons_to_c([Cons,H,T|List],[HH|TT]):- List==[], atom(Cons),is_cons_f(Cons), t_is_ttable(T), cons_to_c(H,HH),!,cons_to_c(T,TT). -cons_to_c(I,O):- \+ is_list(I), compound_name_arguments(I,F,II),maplist(cons_to_c,II,OO),!,compound_name_arguments(O,F,OO). -cons_to_c(I,I). - - - -t_is_ttable(T):- var(T),!. -t_is_ttable(T):- is_i_nil(T),!. -t_is_ttable(T):- is_ftVar(T),!. -t_is_ttable([F|Args]):- F=='Cons',!,is_list(Args). -t_is_ttable([_|Args]):- !, \+ is_list(Args). -t_is_ttable(_). - -is_cons_f(Cons):- is_cf_nil(Cons,_). -is_cf_nil('Cons','NNNil'). -%is_cf_nil('::','nil'). - -is_i_nil(I):- - is_cf_nil('Cons',Nil), I == Nil. - -subst_vars(TermWDV, NewTerm):- - subst_vars(TermWDV, NewTerm, NamedVarsList), - maybe_set_var_names(NamedVarsList). - -subst_vars(TermWDV, NewTerm, NamedVarsList) :- - subst_vars(TermWDV, NewTerm, [], NamedVarsList). - -subst_vars(Term, Term, NamedVarsList, NamedVarsList) :- var(Term), !. -subst_vars([], [], NamedVarsList, NamedVarsList):- !. -subst_vars([TermWDV|RestWDV], [Term|Rest], Acc, NamedVarsList) :- !, - subst_vars(TermWDV, Term, Acc, IntermediateNamedVarsList), - subst_vars(RestWDV, Rest, IntermediateNamedVarsList, NamedVarsList). -subst_vars('$VAR'('_'), _, NamedVarsList, NamedVarsList) :- !. -subst_vars('$VAR'(VName), Var, Acc, NamedVarsList) :- nonvar(VName), svar_fixvarname(VName,Name), !, - (memberchk(Name=Var, Acc) -> NamedVarsList = Acc ; ( !, Var = _, NamedVarsList = [Name=Var|Acc])). -subst_vars(Term, Var, Acc, NamedVarsList) :- atom(Term),atom_concat('$',DName,Term), - dvar_name(DName,Name),!,subst_vars('$VAR'(Name), Var, Acc, NamedVarsList). - -subst_vars(TermWDV, NewTerm, Acc, NamedVarsList) :- - compound(TermWDV), !, - compound_name_arguments(TermWDV, Functor, ArgsWDV), - subst_vars(ArgsWDV, Args, Acc, NamedVarsList), - compound_name_arguments(NewTerm, Functor, Args). -subst_vars(Term, Term, NamedVarsList, NamedVarsList). - - - -:- nb_setval(variable_names,[]). - - -assert_preds(_Self,_Load,_Preds):- \+ preview_compiler,!. -assert_preds(_Self,Load,Preds):- - expand_to_hb(Preds,H,_B),functor(H,F,A), - color_g_mesg('#005288',( - ignore(( - \+ predicate_property(H,defined), - if_t(use_metta_compiler,catch_i(dynamic(F,A))), - format(' :- ~q.~n',[dynamic(F/A)]), - if_t(option_value('tabling',true), format(' :- ~q.~n',[table(F/A)])))), - if_t((preview_compiler), - format('~N~n ~@',[portray_clause(Preds)])), - if_t(use_metta_compiler,if_t(\+ predicate_property(H,static),add_assertion(Preds))))), - nop(metta_anew1(Load,Preds)). - - -%load_hook(_Load,_Hooked):- !. -load_hook(Load,Hooked):- ignore(( \+ ((forall(load_hook0(Load,Hooked),true))))),!. - -load_hook0(_,_):- \+ current_prolog_flag(metta_interp,ready),!. -load_hook0(_,_):- \+ preview_compiler,!. -load_hook0(Load,metta_defn(=,Self,H,B)):- - functs_to_preds([=,H,B],Preds), - assert_preds(Self,Load,Preds). -/* -load_hook0(Load,get_metta_atom(Eq,Self,H)):- B = 'True', - H\=[':'|_], functs_to_preds([=,H,B],Preds), - assert_preds(Self,Load,Preds). -*/ - -use_metta_compiler:- notrace(option_value('compile','full')), !. -preview_compiler:- \+ option_value('compile',false), !. -%preview_compiler:- use_metta_compiler,!. - - -op_decl('pragma!', [ 'Atom', 'Atom'], 'EmptyType'). - -op_decl('match', [ 'Space', 'Atom', 'Atom'], '%Undefined%'). -op_decl('remove-atom', [ 'Space', 'Atom'], 'EmptyType'). -op_decl('add-atom', [ 'Space', 'Atom'], 'EmptyType'). -op_decl('get-atoms', [ 'Space' ], 'Atom'). - -op_decl('get-state', [[ 'MonadicState', Type]],Type):- trace. -op_decl('change-state!', [[ 'MonadicState',Type],Type],'EmptyType'). -op_decl('new-state', [Type], ['MonadicState',Type ]). - -op_decl('car-atom', [ 'Expression' ], 'Atom'). -op_decl('cdr-atom', [ 'Expression' ], 'Expression'). - -op_decl(let, [ 'Atom', '%Undefined%', 'Atom' ], 'Atom'). -op_decl('let*', [ 'Expression', 'Atom' ], 'Atom'). - -op_decl(and, [ 'Bool', 'Bool' ], 'Bool'). -op_decl(or, [ 'Bool', 'Bool' ], 'Bool'). -op_decl(case, [ 'Expression', 'Atom' ], 'Atom'). -/* -op_decl(apply, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). -op_decl(chain, [ 'Atom', 'Variable', 'Atom' ], 'Atom'). -op_decl('filter-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). -op_decl('foldl-atom', [ 'Expression', 'Atom', 'Variable', 'Variable', 'Atom' ], 'Atom'). -op_decl('map-atom', [ 'Expression', 'Variable', 'Atom' ], 'Expression'). -op_decl(quote, [ 'Atom' ], 'Atom'). -op_decl('if-decons', [ 'Atom', 'Variable', 'Variable', 'Atom', 'Atom' ], 'Atom'). -op_decl('if-empty', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). -op_decl('if-error', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). -op_decl('if-non-empty-expression', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). -op_decl('if-not-reducible', [ 'Atom', 'Atom', 'Atom' ], 'Atom'). -op_decl(return, [ 'Atom' ], 'ReturnType'). -op_decl('return-on-error', [ 'Atom', 'Atom'], 'Atom'). -op_decl(unquote, [ '%Undefined%'], '%Undefined%'). -op_decl(cons, [ 'Atom', 'Atom' ], 'Atom'). -op_decl(decons, [ 'Atom' ], 'Atom'). -op_decl(empty, [], '%Undefined%'). -op_decl('Error', [ 'Atom', 'Atom' ], 'ErrorType'). -op_decl(function, [ 'Atom' ], 'Atom'). -op_decl(id, [ 'Atom' ], 'Atom'). -op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom' ], 'Atom'). -*/ -op_decl(eval, [ 'Atom' ], 'Atom'). -op_decl(unify, [ 'Atom', 'Atom', 'Atom', 'Atom'], '%Undefined%'). -op_decl(if, [ 'Bool', 'Atom', 'Atom'], _T). -op_decl('%', [ 'Number', 'Number' ], 'Number'). -op_decl('*', [ 'Number', 'Number' ], 'Number'). -op_decl('-', [ 'Number', 'Number' ], 'Number'). -op_decl('+', [ 'Number', 'Number' ], 'Number'). -op_decl(combine, [ X, X], X). - -op_decl('bind!', ['Symbol','%Undefined%'], 'EmptyType'). -op_decl('import!', ['Space','Atom'], 'EmptyType'). -op_decl('get-type', ['Atom'], 'Type'). - -type_decl('Any'). -type_decl('Atom'). -type_decl('Bool'). -type_decl('ErrorType'). -type_decl('Expression'). -type_decl('Number'). -type_decl('ReturnType'). -type_decl('Space'). -type_decl('Symbol'). -type_decl('MemoizedState'). -type_decl('Type'). -type_decl('%Undefined%'). -type_decl('Variable'). - -:- dynamic(get_metta_atom/2). -:- dynamic(asserted_metta_atom/2). -metta_atom_stdlib(_):-!,fail. -metta_atom_stdlib([:, Type, 'Type']):- type_decl(Type). -metta_atom_stdlib([:, Op, [->|List]]):- op_decl(Op,Params,ReturnType),append(Params,[ReturnType],List). - -%get_metta_atom(Eq,KB, [F|List]):- KB='&flybase',fb_pred(F, Len), length(List,Len),apply(F,List). - - -get_metta_atom(Eq,Space, Atom):- get_metta_atom_from(Space, Atom), \+ (Atom =[EQ,_,_], EQ==Eq). - -get_metta_atom_from(KB, [F, A| List]):- KB='&flybase',fb_pred_nr(F, Len),current_predicate(F/Len), length([A|List],Len),apply(F,[A|List]). -get_metta_atom_from([Superpose,ListOf], Atom):- Superpose == 'superpose',is_list(ListOf),!,member(KB,ListOf),get_metta_atom_from(KB,Atom). -get_metta_atom_from(Space, Atom):- typed_list(Space,_,L),!, member(Atom,L). -get_metta_atom_from(KB,Atom):- (KB=='&self'; KB='&stdlib'), metta_atom_stdlib(Atom). -get_metta_atom_from(KB,Atom):- if_or_else(asserted_metta_atom( KB,Atom),asserted_metta_atom_fallback( KB,Atom)). - -asserted_metta_atom_fallback( KB,Atom):- fail, is_list(KB),!, member(Atom,KB). -%asserted_metta_atom_fallback( KB,Atom):- get_metta_atom_from(KB,Atom) - -%metta_atom(KB,[F,A|List]):- metta_atom(KB,F,A,List), F \== '=',!. -metta_atom(KB,Atom):- get_metta_atom_from(KB,Atom). -metta_defn(KB,Head,Body):- metta_defn(_Eq,KB,Head,Body). -metta_defn(Eq,KB,Head,Body):- ignore(Eq = '='), get_metta_atom_from(KB,[Eq,Head,Body]). -metta_type(S,H,B):- get_metta_atom_from(S,[':',H,B]). -%typed_list(Cmpd,Type,List):- compound(Cmpd), Cmpd\=[_|_], compound_name_arguments(Cmpd,Type,[List|_]),is_list(List). - - -%maybe_xform(metta_atom(KB,[F,A|List]),metta_atom(KB,F,A,List)):- is_list(List),!. -maybe_xform(metta_defn(Eq,KB,Head,Body),metta_atom(KB,[Eq,Head,Body])). -maybe_xform(metta_type(KB,Head,Body),metta_atom(KB,[':',Head,Body])). -maybe_xform(metta_atom(KB,HeadBody),asserted_metta_atom(KB,HeadBody)). -maybe_xform(_OBO,_XForm):- !, fail. - -metta_anew1(Load,_OBO):- var(Load),trace,!. -metta_anew1(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew1(Mode,OBO). -metta_anew1(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew1(Load,XForm). - -metta_anew1(load,OBO):- OBO= metta_atom(Space,Atom),!,'add-atom'(Space, Atom). -metta_anew1(unload,OBO):- OBO= metta_atom(Space,Atom),!,'remove-atom'(Space, Atom). - -metta_anew1(load,OBO):- !, must_det_ll((load_hook(load,OBO), - subst_vars(OBO,Cl),show_failure(assertz_if_new(Cl)))). %to_metta(Cl). -metta_anew1(unload,OBO):- subst_vars(OBO,Cl),load_hook(unload,OBO), - expand_to_hb(Cl,Head,Body), - predicate_property(Head,number_of_clauses(_)), - ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). - -metta_anew2(Load,_OBO):- var(Load),trace,!. -metta_anew2(Load,OBO):- maybe_xform(OBO,XForm),!,metta_anew2(Load,XForm). -metta_anew2(Ch,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew2(Mode,OBO). -metta_anew2(load,OBO):- must_det_ll((load_hook(load,OBO),subst_vars_not_last(OBO,Cl),assertz_if_new(Cl))). %to_metta(Cl). -metta_anew2(unload,OBO):- subst_vars_not_last(OBO,Cl),load_hook(unload,OBO), - expand_to_hb(Cl,Head,Body), - predicate_property(Head,number_of_clauses(_)), - ignore((clause(Head,Body,Ref),clause(Head2,Body2,Ref),(Head+Body)=@=(Head2+Body2),erase(Ref),pp_m(Cl))). - - -metta_anew(Load,Src,OBO):- maybe_xform(OBO,XForm),!,metta_anew(Load,Src,XForm). -metta_anew(Ch,Src,OBO):- metta_interp_mode(Ch,Mode), !, metta_anew(Mode,Src,OBO). -metta_anew(Load,_Src,OBO):- silent_loading,!,metta_anew1(Load,OBO). -metta_anew(Load,Src,OBO):- format('~N'), color_g_mesg('#0f0f0f',(write(' ; Action: '),writeq(Load=OBO))), - color_g_mesg('#ffa500', write_src(Src)), - metta_anew1(Load,OBO),format('~n'). - -subst_vars_not_last(A,B):- - functor(A,_F,N),arg(N,A,E), - subst_vars(A,B), - nb_setarg(N,B,E),!. - -con_write(W):-check_silent_loading, write(W). -con_writeq(W):-check_silent_loading, writeq(W). -writeqln(Q):- check_silent_loading,write(' '),con_writeq(Q),connl. - -connlf:- check_silent_loading, format('~N'). -connl:- check_silent_loading,nl. -% check_silent_loading:- silent_loading,!,trace,break. -check_silent_loading. -silent_loading:- is_converting,!. -silent_loading:- option_value('html','True'), !,fail. -silent_loading:- option_value('trace-on-load','False'), !. - - - - -uncompound(OBO,Src):- \+ compound(OBO),!, Src = OBO. -uncompound('$VAR'(OBO),'$VAR'(OBO)):-!. -uncompound(IsList,Src):- is_list(IsList),!,maplist(uncompound,IsList,Src). -uncompound([Is|NotList],[SrcH|SrcT]):-!, uncompound(Is,SrcH),uncompound(NotList,SrcT). -uncompound(Compound,Src):- compound_name_arguments(Compound,Name,Args),maplist(uncompound,[Name|Args],Src). - -assert_to_metta(_):- reached_file_max,!. -assert_to_metta(OBO):- - must_det_ll((OBO=..[Fn|DataLL], - maplist(better_arg,DataLL,DataL), - into_datum(Fn, DataL, Data), - functor(Data,Fn,A),decl_fb_pred(Fn,A), - real_assert(Data),!, - incr_file_count(_))). - -assert_to_metta(OBO):- - ignore(( A>=2,A<700, - OBO=..[Fn|Cols], - must_det_ll(( - make_assertion4(Fn,Cols,Data,OldData), - functor(Data,FF,AA), - decl_fb_pred(FF,AA), - ((fail,call(Data))->true;( - must_det_ll(( - real_assert(Data), - incr_file_count(_), - ignore((((should_show_data(X), - ignore((fail,OldData\==Data,write('; oldData '),write_src(OldData),format(' ; ~w ~n',[X]))), - write_src(Data),format(' ; ~w ~n',[X]))))), - ignore(( - fail, option_value(output_stream,OutputStream), - is_stream(OutputStream), - should_show_data(X1),X1<1000,must_det_ll((display(OutputStream,Data),writeln(OutputStream,'.'))))))))))))),!. - -assert_MeTTa(OBO):- !, assert_to_metta(OBO). -%assert_MeTTa(OBO):- !, assert_to_metta(OBO),!,heartbeat. -/* -assert_MeTTa(Data):- !, heartbeat, functor(Data,F,A), A>=2, - decl_fb_pred(F,A), - incr_file_count(_), - ignore((((should_show_data(X), - write(newData(X)),write(=),write_src(Data))))), - assert(Data),!. -*/ - - -%:- dynamic((metta_type/3,metta_defn/3,get_metta_atom/2)). - -into_space(Self,'&self',Self):-!. -into_space(_,Other,Other):-!. - - -into_space(Self,Myself,SelfO):- into_space(30,Self,Myself,SelfO). - -into_space(_Dpth,Self,Myself,Self):-Myself=='&self',!. -into_space(_Dpth,Self,None,Self):- 'None' == None,!. -into_space(Depth,Self,Other,Result):- eval_H(Depth,Self,Other,Result). -into_name(_,Other,Other). - -%eval_f_args(Depth,Self,F,ARGS,[F|EARGS]):- maplist(eval_H(Depth,Self),ARGS,EARGS). - - -combine_result(TF,R2,R2):- TF == [], !. -combine_result(TF,_,TF):-!. - - -do_metta1_e(_Self,_,exec(Exec)):- !,write_exec(Exec),!. -do_metta1_e(_Self,_,[=,A,B]):- !, with_concepts(false, - (con_write('(= '), with_indents(false,write_src(A)), (is_list(B) -> connl ; true),con_write(' '),with_indents(true,write_src(B)),con_write(')'))),connl. -do_metta1_e(_Self,_LoadExec,Term):- write_src(Term),connl. - -write_exec(Exec):- notrace(write_exec0(Exec)). -%write_exec0(Exec):- atom(Exec),!,write_exec0([Exec]). -write_exec0(Exec):- - wots(S,write_src(exec(Exec))), - nb_setval(exec_src,Exec), - ignore((notrace((color_g_mesg_ok('#0D6328',(format('~N'),writeln(S))))))). - - - -asserted_do_metta(Space,Ch,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta(Space,Mode,Src). - -asserted_do_metta(Space,Load,Src):- Load==exec,!,do_metta_exec(python,Space,Src,_Out). -asserted_do_metta(Space,Load,Src):- asserted_do_metta2(Space,Load,Src,Src). - -asserted_do_metta2(Space,Ch,Info,Src):- metta_interp_mode(Ch,Mode), !, asserted_do_metta2(Space,Mode,Info,Src). -asserted_do_metta2(Self,Load,[TypeOp,Fn,Type], Src):- TypeOp = ':', \+ is_list(Type),!, - must_det_ll(( - color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,Type]))))),!. - -asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL], Src):- TypeOp = ':',!, - must_det_ll(( - decl_length(TypeDecL,Len),LenM1 is Len - 1, last_element(TypeDecL,LE), - color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecL]))), - metta_anew1(Load,metta_arity(Self,Fn,LenM1)), - arg_types(TypeDecL,[],EachArg), - metta_anew1(Load,metta_params(Self,Fn,EachArg)),!, - metta_anew1(Load,metta_last(Self,Fn,LE)))). - -asserted_do_metta2(Self,Load,[TypeOp,Fn,TypeDecL,RetType], Src):- TypeOp = ':',!, - must_det_ll(( - decl_length(TypeDecL,Len), - append(TypeDecL,[RetType],TypeDecLRet), - color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,[':',Fn,TypeDecLRet]))), - metta_anew1(Load,metta_arity(Self,Fn,Len)), - arg_types(TypeDecL,[RetType],EachArg), - metta_anew1(Load,metta_params(Self,Fn,EachArg)), - metta_anew1(Load,metta_return(Self,Fn,RetType)))),!. - -/*do_metta(File,Self,Load,PredDecl, Src):-fail, - metta_anew(Load,Src,metta_atom(Self,PredDecl)), - ignore((PredDecl=['=',Head,Body], metta_anew(Load,Src,metta_defn(Eq,Self,Head,Body)))), - ignore((Body == 'True',!,do_metta(File,Self,Load,Head))), - nop((fn_append(Head,X,Head), fn_append(PredDecl,X,Body), - metta_anew((Head:- Body)))),!.*/ - -asserted_do_metta2(Self,Load,[EQ,Head,Result], Src):- EQ=='=', !, - must_det_ll(( - discover_head(Self,Load,Head), - color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_defn(EQ,Self,Head,Result))), - discover_body(Self,Load,Result))). - -asserted_do_metta2(Self,Load,PredDecl, Src):- - ignore(discover_head(Self,Load,PredDecl)), - color_g_mesg_ok('#ffa500',metta_anew(Load,Src,metta_atom(Self,PredDecl))). - - -always_exec(exec(W)):- !, is_list(W), always_exec(W). -always_exec(Comp):- compound(Comp),compound_name_arity(Comp,Name,N),atom_concat('eval',_,Name),Nm1 is N-1, arg(Nm1,Comp,TA),!,always_exec(TA). -always_exec(List):- \+ is_list(List),!,fail. -always_exec([Var|_]):- \+ atom(Var),!,fail. -always_exec(['extend-py!'|_]):- !, fail. -always_exec([H|_]):- atom_concat(_,'!',H),!. %pragma!/print!/transfer!/include! etc -always_exec(['assertEqualToResult'|_]):-!,fail. -always_exec(['assertEqual'|_]):-!,fail. -always_exec(_):-!,fail. % everything else - -if_t(A,B,C):- trace,if_t((A,B),C). - - -check_answers_for(TermV,Ans):- (string(TermV);var(Ans);var(TermV)),!,fail. -check_answers_for(TermV,_):- sformat(S,'~q',[TermV]),atom_contains(S,"[assert"),!,fail. -check_answers_for(_,Ans):- contains_var('BadType',Ans),!,fail. -check_answers_for(TermV,_):- inside_assert(TermV,BaseEval), always_exec(BaseEval),!,fail. - -%check_answers_for([TermV],Ans):- !, check_answers_for(TermV,Ans). -%check_answers_for(TermV,[Ans]):- !, check_answers_for(TermV,Ans). -check_answers_for(_,_). - -got_exec_result2(Val,Nth,Ans):- is_list(Ans), exclude(==(','),Ans,Ans2), Ans\==Ans2,!, - got_exec_result2(Val,Nth,Ans2). -got_exec_result2(Val,Nth,Ans):- - must_det_ll(( - Nth100 is Nth+100, - get_test_name(Nth100,TestName), - nb_current(exec_src,Exec), - if_t( ( \+ is_unit_test_exec(Exec)), - ((equal_enough(Val,Ans) - -> write_pass_fail_result_now(TestName,exec,Exec,'PASS',Ans,Val) - ; write_pass_fail_result_now(TestName,exec,Exec,'FAIL',Ans,Val)))))). - -write_pass_fail_result_now(TestName,exec,Exec,PASS_FAIL,Ans,Val):- - (PASS_FAIL=='PASS'->flag(loonit_success, X, X+1);flag(loonit_failure, X, X+1)), - (PASS_FAIL=='PASS'->Color=cyan;Color=red), - color_g_mesg(Color,write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val)),!,nl, - nl,writeln('--------------------------------------------------------------------------'),!. - -write_pass_fail_result_c(TestName,exec,Exec,PASS_FAIL,Ans,Val):- - nl,write_mobj(exec,[(['assertEqualToResult',Exec,Ans])]), - nl,write_src('!'(['assertEqual',Val,Ans])), - write_pass_fail_result(TestName,exec,Exec,PASS_FAIL,Ans,Val). - -is_unit_test_exec(Exec):- sformat(S,'~w',[Exec]),sub_atom(S,_,_,_,'assert'). -is_unit_test_exec(Exec):- sformat(S,'~q',[Exec]),sub_atom(S,_,_,_,"!',"). - -return_empty('Empty'). -return_empty(_,Empty):- return_empty(Empty). - -convert_tax(_How,Self,Tax,Expr,NewHow):- - metta_interp_mode(Ch,Mode), - string_concat(Ch,TaxM,Tax),!, - normalize_space(string(NewTax),TaxM), - convert_tax(Mode,Self,NewTax,Expr,NewHow). -convert_tax(How,_Self,Tax,Expr,How):- - %parse_sexpr_metta(Tax,Expr). - normalize_space(string(NewTax),Tax), - parse_sexpr_metta1(NewTax,Expr). - -:- if( \+ current_predicate(notrace/1) ). - notrace(G):- once(G). -:- endif. - -metta_interp_mode('+',load). -metta_interp_mode('-',unload). -metta_interp_mode('!',exec). -metta_interp_mode('?',call). -metta_interp_mode('^',load_like_file). - - -call_sexpr(Mode,Self,Tax,_S,Out):- - metta_interp_mode(Mode,How), - (atom(Tax);string(Tax)), - normalize_space(string(TaxM),Tax), - convert_tax(How,Self,TaxM,Expr,NewHow),!, - show_call(do_metta(python,NewHow,Self,Expr,Out)). - - - -do_metta(_File,_Load,_Self,In,Out):- var(In),!,In=Out. -do_metta(_From,_Mode,_Self,end_of_file,'Empty'):- !. %, halt(7), writeln('\n\n% To restart, use: ?- repl.'). -do_metta(_File,_Load,_Self,Cmt,Out):- Cmt==[],!, Out=[]. - -do_metta(From,Load,Self,'$COMMENT'(Expr,_,_),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). -do_metta(From,Load,Self,'$STRING'(Expr),Out):- !, do_metta(From,comment(Load),Self,Expr,Out). -do_metta(From,comment(Load),Self,[Expr],Out):- !, do_metta(From,comment(Load),Self,Expr,Out). -do_metta(From,comment(Load),Self,Cmt,Out):- write_comment(Cmt), !, - ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog only: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))), - ignore(( atomic(Cmt),atomic_list_concat([_,Src],'MeTTaLog: ',Cmt),!,atom_string(Src,SrcCode),do_metta(mettalog_only(From),Load,Self,SrcCode,Out))),!. - -do_metta(From,How,Self,Src,Out):- string(Src),!, - normalize_space(string(TaxM),Src), - convert_tax(How,Self,TaxM,Expr,NewHow),!, - do_metta(From,NewHow,Self,Expr,Out). - -do_metta(From,_,Self,exec(Expr),Out):- !, do_metta(From,exec,Self,Expr,Out). -do_metta(From,_,Self, call(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). -do_metta(From,_,Self, ':-'(Expr),Out):- !, do_metta(From,call,Self,Expr,Out). -do_metta(From,call,Self,TermV,FOut):- !, - call_for_term_variables(TermV,Term,NamedVarsList,X), must_be(nonvar,Term), - copy_term(NamedVarsList,Was), - Output = NamedVarsList, - user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). -do_metta(_File,Load,Self,Src,Out):- Load\==exec, !, as_tf(asserted_do_metta(Self,Load,Src),Out). - -do_metta(file(Filename),exec,Self,TermV,Out):- - notrace(( - inc_exec_num(Filename), - must_det_ll(( - get_exec_num(Filename,Nth), - Nth>0)), - file_answers(Filename, Nth, Ans), - check_answers_for(TermV,Ans),!, - must_det_ll(( - color_g_mesg_ok('#ffa500', - (writeln(';; In file as: '), - color_g_mesg([bold,fg('#FFEE58')], write_src(exec(TermV))), - write(';; To unit test case:'))))),!, - do_metta_exec(file(Filename),Self,['assertEqualToResult',TermV,Ans],Out))). - -do_metta(From,exec,Self,TermV,Out):- !, do_metta_exec(From,Self,TermV,Out). - -do_metta_exec(From,Self,TermV,FOut):- - Output = X, - notrace(into_metta_callable(Self,TermV,Term,X,NamedVarsList,Was)),!, - user:interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut). - - -call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- - term_variables(TermV, AllVars), call_for_term_variables4v(TermV,AllVars,Term,NamedVarsList,X),!, - must_be(callable,Term). -call_for_term_variables(TermV,catch_red(show_failure(Term)),NamedVarsList,X):- - get_term_variables(TermV, DCAllVars, Singletons, NonSingletons), - call_for_term_variables5(TermV, DCAllVars, Singletons, NonSingletons, Term,NamedVarsList,X),!, - must_be(callable,Term). - -into_metta_callable(_Self,TermV,Term,X,NamedVarsList,Was):- use_metta_compiler, !, - must_det_ll(((( - - % ignore(Res = '$VAR'('ExecRes')), - RealRes = Res, - compile_for_exec(Res,TermV,ExecGoal),!, - subst_vars(Res+ExecGoal,Res+Term,NamedVarsList), - copy_term(NamedVarsList,Was), - term_variables(Term,Vars), - notrace((color_g_mesg('#114411',print_tree(exec(Res):-ExecGoal)))), - %nl,writeq(Term),nl, - ((\+ \+ - ((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), - %nb_current(variable_names,NamedVarsList), - %nl,print(subst_vars(Term,NamedVarsList,Vars)), - nl)))), - nop(maplist(verbose_unify,Vars)), - %NamedVarsList=[_=RealRealRes|_], - var(RealRes), X = RealRes)))),!. - - -into_metta_callable(Self,TermV,CALL,X,NamedVarsList,Was):-!, - option_else('stack-max',StackMax,100), - CALL = eval_H(StackMax,Self,Term,X), - notrace(( must_det_ll(( - if_t(preview_compiler,write_compiled_exec(TermV,_Goal)), - subst_vars(TermV,Term,NamedVarsList), - copy_term(NamedVarsList,Was) - %term_variables(Term,Vars), - %nl,writeq(Term),nl, - %skip((\+ \+ - %((numbervars(v(TermV,Term,NamedVarsList,Vars),999,_,[attvar(bind)]), %nb_current(variable_names,NamedVarsList), - %nl,print(subst_vars(TermV,Term,NamedVarsList,Vars)),nl)))), - %nop(maplist(verbose_unify,Vars)))))),!. - )))),!. - -eval_H(StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). -eval_H(Term,X):- eval_args(Term,X). -/* -eval_H(StackMax,Self,Term,X). - -eval_H(StackMax,Self,Term,X):- - Time = 90.0, - ((always_exec(Term)) -> - if_or_else(t1('=',_,StackMax,Self,Term,X), - (t2('=',_,StackMax,Self,Term,X))); - call_max_time(t1('=',_,StackMax,Self,Term,X), Time, - (t2('=',_,StackMax,Self,Term,X)))). - -eval_H(Term,X):- - current_self(Self), StackMax = 100, - if_or_else((t1('=',_,StackMax,Self,Term,X),X\==Term),(t2('=',_,StackMax,Self,Term,X),nop(X\==Term))). - - -t1('=',_,StackMax,Self,Term,X):- eval_args('=',_,StackMax,Self,Term,X). -t2('=',_,StackMax,Self,Term,X):- fail, subst_args('=',_,StackMax,Self,Term,X). -*/ - -%eval_H(Term,X):- if_or_else((subst_args(Term,X),X\==Term),(eval_args(Term,Y),Y\==Term)). - -print_goals(TermV):- write_src(TermV). - - -if_or_else(Goal,Else):- call(Goal)*->true;call(Else). - -interacting:- tracing,!. -interacting:- current_prolog_flag(debug,true),!. -interacting:- option_value(interactive,true),!. -interacting:- option_value(prolog,true),!. - -% call_max_time(+Goal, +MaxTime, +Else) -call_max_time(Goal,_MaxTime, Else) :- interacting,!, if_or_else(Goal,Else). -call_max_time(Goal,_MaxTime, Else) :- !, if_or_else(Goal,Else). -call_max_time(Goal, MaxTime, Else) :- - catch(if_or_else(call_with_time_limit(MaxTime, Goal),Else), time_limit_exceeded, Else). - - -catch_err(G,E,C):- catch(G,E,(notrace(if_t(atom(E),throw(E))),C)). - -%repl:- option_value('repl',prolog),!,prolog. -%:- ensure_loaded(metta_toplevel). - -%:- discontiguous do_metta_exec/3. - -%repl:- setup_call_cleanup(flag(repl_level,Was,Was+1),repl0, - % (flag(repl_level,_,Was),(Was==0 -> maybe_halt(7) ; true))). - -repl:- catch(repl2,end_of_input,true). - -repl1:- - with_option('doing_repl',true, - with_option(repl,true,repl2)). %catch((repeat, repl2, fail)'$aborted',true). -repl2:- - %notrace((current_input(In),nop(catch(load_history,_,true)))), - % ignore(install_readline(In)), - repeat, - set_prolog_flag(gc,false), - %with_option(not_a_reload,true,make), - ignore(catch(once(repl3),restart_reading,true)), - set_prolog_flag(gc,true),fail. -repl3:- - notrace(( flag(eval_num,_,0), - current_self(Self), - current_read_mode(Mode), - %ignore(shell('stty sane ; stty echo')), - %current_input(In), - format(atom(P),'metta ~w ~w> ',[Self, Mode]))), - setup_call_cleanup( - notrace(prompt(Was,P)), - notrace((ttyflush,repl_read(Expr),ttyflush)), - notrace(prompt(_,Was))), - if_trace(repl,fbug(repl_read(Expr))), - %fbug(repl_read(Expr)), - notrace(if_t(Expr==end_of_file,throw(end_of_input))), - %ignore(shell('stty sane ; stty echo')), - notrace(ignore(check_has_directive(Expr))), - once(do_metta(repl_true,Mode,Self,Expr,_)). - -check_has_directive(Atom):- atom(Atom),atom_concat(_,'.',Atom),!. -check_has_directive(call(N=V)):- nonvar(N),!, set_directive(N,V). -check_has_directive(call(Rtrace)):- rtrace == Rtrace,!, rtrace,notrace(throw(restart_reading)). -check_has_directive(NEV):- atom(NEV), atomic_list_concat([N,V],'=',NEV), set_directive(N,V). -check_has_directive([AtEq,Value]):-atom(AtEq),atom_concat('@',Name,AtEq), set_directive(Name,Value). -check_has_directive(ModeChar):- atom(ModeChar),metta_interp_mode(ModeChar,_Mode),!,set_directive(read_mode,ModeChar). -check_has_directive('@'):- show_options_values,nl,!,notrace(throw(restart_reading)). -check_has_directive(AtEq):-atom(AtEq),atom_concat('@',NEV,AtEq),option_value(NEV,Foo),print(NEV=Foo),nl,!,notrace(throw(restart_reading)). -check_has_directive(_). -set_directive(N,V):- atom_concat('@',NN,N),!,set_directive(NN,V). -set_directive(N,V):- N==mode,!,set_directive(read_mode,V). -set_directive(N,V):- show_call(set_option_value(N,V)),!,notrace(throw(restart_reading)). - -read_pending_white_codes(In):- - read_pending_codes(In,[10],[]),!. -read_pending_white_codes(_). - -call_for_term_variables4v(Term,[] ,as_tf(Term,TF),NamedVarsList,TF):- get_global_varnames(NamedVarsList),!. -call_for_term_variables4v(Term,[X] , Term, NamedVarsList,X):- get_global_varnames(NamedVarsList). - - -not_in_eq(List, Element) :- - member(V, List), V == Element. - -get_term_variables(Term, DontCaresN, CSingletonsN, CNonSingletonsN) :- - term_variables(Term, AllVars), - get_global_varnames(VNs), - writeqln(term_variables(Term, AllVars)=VNs), - term_singletons(Term, Singletons), - term_dont_cares(Term, DontCares), - include(not_in_eq(Singletons), AllVars, NonSingletons), - include(not_in_eq(DontCares), NonSingletons, CNonSingletons), - include(not_in_eq(DontCares), Singletons, CSingletons), - maplist(into_named_vars,[DontCares, CSingletons, CNonSingletons], - [DontCaresN, CSingletonsN, CNonSingletonsN]), - writeqln([DontCaresN, CSingletonsN, CNonSingletonsN]). - -term_dont_cares(Term, DontCares):- - term_variables(Term, AllVars), - get_global_varnames(VNs), - include(has_sub_var(AllVars),VNs,HVNs), - include(underscore_vars,HVNs,DontCareNs), - maplist(arg(2),DontCareNs,DontCares). - -into_named_vars(Vars,L):- is_list(Vars), !, maplist(name_for_var_vn,Vars,L). -into_named_vars(Vars,L):- term_variables(Vars,VVs),!,into_named_vars(VVs,L). - -has_sub_var(AllVars,_=V):- sub_var(V,AllVars). -underscore_vars(V):- var(V),!,name_for_var(V,N),!,underscore_vars(N). -underscore_vars(N=_):- !, atomic(N),!,underscore_vars(N). -underscore_vars(N):- atomic(N),!,atom_concat('_',_,N). - -get_global_varnames(VNs):- nb_current('variable_names',VNs),VNs\==[],!. -get_global_varnames(VNs):- prolog_load_context(variable_names,VNs),!. -maybe_set_var_names(List):- List==[],!. -maybe_set_var_names(List):- % fbug(maybe_set_var_names(List)), - is_list(List),!,nb_linkval(variable_names,List). -maybe_set_var_names(_). - -name_for_var_vn(V,N=V):- name_for_var(V,N). - -name_for_var(V,N):- var(V),!,get_global_varnames(VNs),member(N=VV,VNs),VV==V,!. -name_for_var(N=_,N):- !. -name_for_var(V,N):- term_to_atom(V,N),!. - - - %call_for_term_variables5(Term,[],as_tf(Term,TF),[],TF):- atom(Term),!. -call_for_term_variables5(Term,[],[],[],as_tf(Term,TF),[],TF):- ground(Term),!. -call_for_term_variables5(Term,DC,[],[],call_nth(Term,TF),DC,TF):- ground(Term),!. -call_for_term_variables5(Term,_,[],[_=Var],call_nth(Term,Count),['Count'=Count],Var). -call_for_term_variables5(Term,_,[_=Var],[],call_nth(Term,Count),['Count'=Count],Var). -call_for_term_variables5(Term,_,Vars,[_=Var],Term,Vars,Var). -call_for_term_variables5(Term,_,[_=Var],Vars,Term,Vars,Var). -call_for_term_variables5(Term,_,SVars,Vars,call_nth(Term,Count),[Vars,SVars],Count). - - - -is_interactive(From):- notrace(is_interactive0(From)). -is_interactive0(From):- From==false,!,fail. -is_interactive0(From):- atomic(From),is_stream(From),!, \+ stream_property(From,filename(_)). -is_interactive0(From):- From = repl_true,!. -is_interactive0(From):- From = true,!. - - -:- set_prolog_flag(history, 20). - -inside_assert(Var,Var):- \+ compound(Var),!. -inside_assert([H,IA,_],IA):- atom(H),atom_concat('assert',_,H),!. -inside_assert(Conz,Conz):- is_conz(Conz),!. -inside_assert(exec(I),O):- !, inside_assert(I,O). -inside_assert(Eval,O):- functor(Eval,eval_H,A), A1 is A-1, arg(A1,Eval,I),!, inside_assert(I,O). -inside_assert(eval_H(A,B,I,C),eval_H(A,B,O,C)):- !, inside_assert(I,O). -inside_assert(eval_H(I,C),eval_H(O,C)):- !, inside_assert(I,O). -inside_assert(call(I),O):- !, inside_assert(I,O). -inside_assert( ?-(I), O):- !, inside_assert(I,O). -inside_assert( :-(I), O):- !, inside_assert(I,O). -inside_assert(Var,Var). - -:- nb_setval(self_space, '&self'). -current_self(Self):- ((nb_current(self_space,Self),Self\==[])->true;Self='&self'). -:- nb_setval(read_mode, '+'). -current_read_mode(Mode):- ((nb_current(read_mode,Mode),Mode\==[])->true;Mode='+'). - - - -eval(all(Form)):- nonvar(Form), !, forall(eval(Form,_),true). -eval(Form):- - current_self(Self), - do_metta(true,exec,Self,Form,_Out). - -eval(Self,Form):- - current_self(SelfS),SelfS==Self,!, - do_metta(true,exec,Self,Form,_Out). -eval(Form,Out):- - current_self(Self), - eval(Self,Form,Out). - -eval(Self,Form,Out):- - do_metta(prolog,exec,Self,Form,Out). - -name_vars(X='$VAR'(X)). -interactively_do_metta_exec(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- - catch(interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut),'$aborted',fbug(aborted(From,TermV))). - -interactively_do_metta_exec0(From,Self,TermV,Term,X,NamedVarsList,Was,Output,FOut):- - notrace(( - Result = res(FOut), - inside_assert(Term,BaseEval), - option_else(answer,Leap,each), - Control = contrl(inf,Leap), - Skipping = _, - % Initialize Control as a compound term with 'each' as its argument. - %GG = interact(['Result'=X|NamedVarsList],Term,trace_off), - (((From = file(_Filename), option_value('exec',skip), \+ always_exec(BaseEval))) - -> (GG = (skip(Term),deterministic(Complete)), - %Output = - %FOut = "Skipped", - Skipping = 1,!, - %color_g_mesg('#da70d6', (write('% SKIPPING: '), writeq(eval_H(100,Self,BaseEval,X)),writeln('.'))), - % color_g_mesg('#fa90f6', (writeln('; SKIPPING'), with_indents(true,write_src(exec(BaseEval))))), - % if_t(is_list(BaseEval),add_history_src(exec(TermV))), - true - ) - ; GG = %$ locally(set_prolog_flag(gc,false), - ( - (( (Term),deterministic(Complete), nb_setarg(1,Result,Output)))), - !, % metta_toplevel - flag(result_num,_,0), - PL=eval(Self,BaseEval,X), - ( % with_indents(true, - \+ \+ ( - maplist(name_vars,NamedVarsList), - name_vars('OUT'=X), - %add_history_src(exec(BaseEval)), - write_exec(TermV), - if_t(Skipping==1,writeln(' ; SKIPPING')), - if_t(TermV\=BaseEval,color_g_mesg('#fa90f6', (write('; '), with_indents(false,write_src(exec(BaseEval)))))), - if_t((is_interactive(From);Skipping==1), - ( - if_t( \+ option_value(doing_repl,true), - if_t( \+ option_value(repl,true), - if_t( option_value(prolog,true), add_history_pl(PL)))), - if_t(option_value(repl,true), add_history_src(exec(BaseEval))))), - - prolog_only((color_g_mesg('#da70d6', (write('% DEBUG: '), writeq(PL),writeln('.'))))), - true))))), - - (forall_interactive( - From, WasInteractive,Complete, %may_rtrace - (timed_call(GG,Seconds)), - ((Complete==true->!;true), - %repeat, - set_option_value(interactive,WasInteractive), - Control = contrl(Max,DoLeap), - nb_setarg(1,Result,Output), - read_pending_codes(user_input,_,[]), - flag(result_num,R,R+1), - flag(result_num,ResNum,ResNum), - if_t(ResNum=(format('~NDeterministic: ', []), !); %or Nondet - ( Complete==true -> (format('~NLast Result(~w): ',[ResNum]),! ); - format('~NNDet Result(~w): ',[ResNum])))), - color_g_mesg(yellow, ignore((( if_t( \+ atomic(Output), nl), write_src(Output), nl)))), - give_time('Execution',Seconds), - color_g_mesg(green, - ignore((NamedVarsList \=@= Was ->( maplist(print_var,NamedVarsList), nl) ; true))))), - ( - (Complete\==true, WasInteractive, DoLeap\==leap, ResNum - (write("More Solutions? "),get_single_char_key(C), writeq(key=C),nl, - (C=='b' -> (once(repl),fail) ; - (C=='m' -> make ; - (C=='t' -> (nop(set_debug(eval,true)),rtrace) ; - (C=='T' -> (set_debug(eval,true)); - (C==';' -> true ; - (C==esc('[A',[27,91,65]) -> nb_setarg(2, Control, leap) ; - (C=='L' -> nb_setarg(1, Control, ResNum) ; - (C=='l' -> nb_setarg(2, Control, leap) ; - (((C=='\n');(C=='\r')) -> (!,fail); - (!,fail)))))))))))); - (Complete\==true, \+ WasInteractive, Control = contrl(Max,leap)) -> true ; - (((Complete==true ->! ; true))))) - *-> (ignore(Result = res(FOut)),ignore(Output = (FOut))) - ; (flag(result_num,ResNum,ResNum),(ResNum==0->(format('~N~n~n'),!,true);true))), - ignore(Result = res(FOut)). - - - -mqd:- - forall(metta_atom(_KB,['query-info',E,T,Q]), - (writeln(E), - term_variables(T,TVs), - term_variables(Q,QVs), - intersection(TVs,QVs,_,_,SVs), - notrace(eval(['match','&flybase',Q,T],SVs)))). - - -get_single_char_key(O):- get_single_char(C),get_single_char_key(C,O). -get_single_char_key(27,esc(A,[27|O])):- !,read_pending_codes(user_input,O,[]),name(A,O). -get_single_char_key(C,A):- name(A,[C]). - -forall_interactive(file(_),false,Complete,Goal,After):- !, Goal, (Complete==true -> ( After,!) ; ( \+ After )). -forall_interactive(prolog,false,Complete,Goal,After):- !, Goal, (Complete == true -> ! ; true), quietly(After). -forall_interactive(From,WasInteractive,Complete,Goal,After):- - (is_interactive(From) -> WasInteractive = true ; WasInteractive = false),!, - Goal, (Complete==true -> ( quietly(After),!) ; ( quietly( \+ After) )). - -print_var(Name=Var) :- print_var(Name,Var). -print_var(Name,_Var) :- atom_concat('Num',Rest,Name),atom_number(Rest,_),!. -print_var(Name,Var):- write('$'),write(Name), write(' = '), write_src(Var), nl. - -% Entry point for the user to call with tracing enabled -toplevel_goal(Goal) :- - term_variables(Goal,Vars), - trace_goal(Vars, Goal, trace_off). - -% Entry point for the user to call with tracing enabled -trace_goal(Goal) :- - trace_goal(Goal, trace_on). - -% Handle tracing -trace_goal(Goal, Tracing) :- - (Tracing == trace_on -> writeln('Entering goal:'), writeln(Goal) ; true), - term_variables(Goal, Variables), - ( call(Goal) -> - (Tracing == trace_on -> writeln('Goal succeeded with:'), writeln(Variables) ; true), - interact(Variables, Goal, Tracing) - ; (Tracing == trace_on -> writeln('Goal failed.') ; true), - false - ). - -% Interaction with the user -interact(Variables, Goal, Tracing) :- - call(Goal),write('Solution: '), write_src(Variables), - write(' [;next]?'), - get_single_char(Code), - (command(Code, Command) -> - handle_command(Command, Variables, Goal, Tracing) - ; writeln('Unknown command.'), interact(Variables, Goal, Tracing) % handle unknown commands - ). - -install_readline(Input):- - add_history_string("!(pfb3)"), - add_history_string("!(load-flybase-full)"), - add_history_string("!(obo-alt-id $X BS:00063)"), - add_history_string("!(and (total-rows $T TR$) (unique-values $T2 $Col $TR))"), - ignore(editline:el_wrap), - ignore(editline:add_prolog_commands(Input)). - - - - -% Command descriptions -command(59, retry). % ';' to retry -command(115, skip). % 's' to skip to the next solution -command(108, leap). % 'l' to leap (end the debugging session) -command(103, goals). % 'g' to show current goals -command(102, fail). % 'f' to force fail -command(116, trace). % 't' to toggle tracing -command(117, up). % 'u' to continue without interruption -command(101, exit). % 'e' to exit the debugger -command(97, abort). % 'a' to abort -command(98, break). % 'b' to set a breakpoint -command(99, creep). % 'c' to proceed step by step -command(104, help). % 'h' for help -command(65, alternatives). % 'A' for alternatives -command(109, make). % 'm' for make (recompile) -command(67, compile). % 'C' for Compile (compile new executable) - -:- style_check(-singleton). - -% Command implementations -handle_command(make, Variables, Goal, Tracing) :- - writeln('Recompiling...'), - % Insert the logic to recompile the code. - % This might involve calling `make/0` or similar. - make, % This is assuming your Prolog environment has a `make` predicate. - fail. % interact(Variables, Goal, Tracing). - -handle_command(compile, Variables, Goal, Tracing) :- - writeln('Compiling new executable...'), - % Insert the logic to compile a new executable. - % This will depend on how you compile Prolog programs in your environment. - % For example, you might use `qsave_program/2` to create an executable. - % Pseudocode: compile_executable(ExecutableName) - fail. % interact(Variables, Goal, Tracing). -handle_command(alternatives, Variables, Goal, Tracing) :- - writeln('Showing alternatives...'), - % Here you would include the logic for displaying the alternatives. - % For example, showing other clauses that could be tried for the current goal. - writeln('Alternatives for current goal:'), - writeln(Goal), - % Pseudocode: find_alternatives(Goal, Alternatives) - % Pseudocode: print_alternatives(Alternatives) - fail. % interact(Variables, Goal, Tracing). -% Extend the command handling with the 'help' command implementation -handle_command(help, Variables, Goal, Tracing) :- - print_help, - fail. % interact(Variables, Goal, Tracing). -handle_command(abort, _, _, _) :- - writeln('Aborting...'), abort. -handle_command(break, Variables, Goal, Tracing) :- - writeln('Breakpoint set.'), % Here you should define what 'setting a breakpoint' means in your context - fail. % interact(Variables, Goal, Tracing). -handle_command(creep, Variables, Goal, Tracing) :- - writeln('Creeping...'), % Here you should define how to 'creep' (step by step execution) through the code - trace. % interact(Variables, Goal, Tracing). -handle_command(retry, Variables, Goal, Tracing) :- - writeln('Continuing...'),!. - %trace_goal(Goal, Tracing). -handle_command(skip, Variables, Goal, Tracing) :- - writeln('Skipping...'). -handle_command(leap, _, _, _) :- - writeln('Leaping...'), nontrace. % Cut to ensure we stop the debugger -handle_command(goals, Variables, Goal, Tracing) :- - writeln('Current goal:'), writeln(Goal), - writeln('Current variables:'), writeln(Variables), - bt,fail. % interact(Variables, Goal, Tracing). -handle_command(fail, _, _, _) :- - writeln('Forcing failure...'), fail. -handle_command(trace, Variables, Goal, Tracing) :- - (Tracing == trace_on -> - NewTracing = trace_off, writeln('Tracing disabled.') - ; NewTracing = trace_on, writeln('Tracing enabled.') - ), - interact(Variables, Goal, NewTracing). -handle_command(up, Variables, Goal, Tracing) :- - writeln('Continuing up...'), - repeat, - ( trace_goal(Goal, Tracing) -> true ; !, fail ). -handle_command(exit, _, _, _) :- - writeln('Exiting debugger...'), !. % Cut to ensure we exit the debugger - -:- style_check(+singleton). - - -% Help description -print_help :- - writeln('Debugger commands:'), - writeln('(;) next - Retry with next solution.'), - writeln('(g) goal - Show the current goal.'), - writeln('(u) up - Finish this goal without interruption.'), - writeln('(s) skip - Skip to the next solution.'), - writeln('(c) creep or - Proceed step by step.'), - writeln('(l) leap - Leap over (the debugging).'), - writeln('(f) fail - Force the current goal to fail.'), - writeln('(B) back - Go back to the previous step.'), - writeln('(t) trace - Toggle tracing on or off.'), - writeln('(e) exit - Exit the debugger.'), - writeln('(a) abort - Abort the current operation.'), - writeln('(b) break - Break to a new sub-REPL.'), - writeln('(h) help - Display this help message.'), - writeln('(A) alternatives - Show alternative solutions.'), - writeln('(m) make - Recompile/Update the current running code.'), - writeln('(C) compile - Compile a fresh executable (based on the running state).'), - writeln('(E) error msg - Show the latest error messages.'), - writeln('(r) retry - Retry the previous command.'), - writeln('(I) info - Show information about the current state.'), - !. - - - - -really_trace:- once(option_value('exec',rtrace);option_value('eval',rtrace);is_debugging((exec));is_debugging((eval))). -% !(pragma! exec rtrace) -may_rtrace(Goal):- really_trace,!, really_rtrace(Goal). -may_rtrace(Goal):- Goal*->true;( \+ tracing, trace,really_rtrace(Goal)). -really_rtrace(Goal):- use_metta_compiler,!,rtrace(call(Goal)). -really_rtrace(Goal):- with_debug((eval),with_debug((exec),Goal)). - -rtrace_on_existence_error(G):- !, catch_err(G,E, (fbug(E=G), \+ tracing, trace, rtrace(G))). -%rtrace_on_existence_error(G):- catch(G,error(existence_error(procedure,W),Where),rtrace(G)). - -prolog_only(Goal):- !,Goal. -prolog_only(Goal):- if_trace(prolog,Goal). - -write_compiled_exec(Exec,Goal):- -% ignore(Res = '$VAR'('ExecRes')), - compile_for_exec(Res,Exec,Goal), - notrace((color_g_mesg('#114411',portray_clause(exec(Res):-Goal)))). - -verbose_unify(Term):- verbose_unify(trace,Term). -verbose_unify(What,Term):- term_variables(Term,Vars),maplist(verbose_unify0(What),Vars),!. -verbose_unify0(What,Var):- put_attr(Var,verbose_unify,What). -verbose_unify:attr_unify_hook(Attr, Value) :- - format('~N~q~n',[verbose_unify:attr_unify_hook(Attr, Value)]), - vu(Attr,Value). -vu(_Attr,Value):- is_ftVar(Value),!. -vu(fail,_Value):- !, fail. -vu(true,_Value):- !. -vu(trace,_Value):- trace. -:- nodebug(metta(eval)). -:- nodebug(metta(exec)). -% Measures the execution time of a Prolog goal and displays the duration in seconds, -% milliseconds, or microseconds, depending on the execution time. -% -% Args: -% - Goal: The Prolog goal to be executed and timed. -% -% The predicate uses the `statistics/2` predicate to measure the CPU time before -% and after executing the provided goal. It calculates the elapsed time in seconds -% and converts it to milliseconds and microseconds. The output is formatted to -% provide clear timing information: -% -% - If the execution takes more than 2 seconds, it displays the time in seconds. -% - If the execution takes between 1 millisecond and 2 seconds, it displays the time -% in milliseconds. -% - If the execution takes less than 1 millisecond, it displays the time in microseconds. -% -% Example usage: -% ?- time_eval(my_goal(X)). -% -% ?- time_eval(sleep(0.95)). -% -% Output examples: -% ; Evaluation took 2.34 seconds. -% ; Evaluation took 123.45 ms. -% ; Evaluation took 0.012 ms. (12.33 microseconds) -% -time_eval(Goal):- - time_eval('Evaluation',Goal). -time_eval(What,Goal) :- - timed_call(Goal,Seconds), - give_time(What,Seconds). - -give_time(What,Seconds):- - Milliseconds is Seconds * 1_000, - (Seconds > 2 - -> format('; ~w took ~2f seconds.~n', [What, Seconds]) - ; (Milliseconds >= 1 - -> format('; ~w took ~3f secs. (~2f milliseconds) ~n', [What, Seconds, Milliseconds]) - ;( Micro is Milliseconds * 1_000, - format('; ~w took ~6f secs. (~2f microseconds) ~n', [What, Seconds, Micro])))). - -timed_call(Goal,Seconds):- - statistics(cputime, Start), - call(Goal), - statistics(cputime, End), - Seconds is End - Start. - -%:- nb_setval(cmt_override,lse('; ',' !(" ',' ") ')). - -:- abolish(fbug/1). -fbug(Info):- notrace(in_cmt(color_g_mesg('#2f2f2f',write_src(Info)))). -example0(_):- fail. -example1(a). example1(_):- fail. -example2(a). example2(b). example2(_):- fail. -example3(a). example3(b). example3(c). example3(_):- fail. -%eval_H(100,'&self',['change-state!','&var',[+,1,['get-state','&var']]],OUT) -%dcall(X):- (call(X),deterministic(YN)),trace,((YN==true)->!;true). -chkdet_call(XX):- !, call(XX). -chkdet_call0(XX):- !, call(XX). - -dcall0000000000(XX):- - USol = sol(dead), - copy_term(XX,X), - call_nth(USol,X,Nth,Det,Prev), - %fbug(call_nth(USol,X,Nth,Det,Prev)), - XX=Prev, - (Det==yes -> (!, (XX=Prev;XX=X)) ; - (((var(Nth) -> ( ! , Prev\==dead) ; - true), - (Nth==1 -> ! ; true)))). - -call_nth(USol,XX,Nth,Det,Prev):- - repeat, - ((call_nth(XX,Nth),deterministic(Det),arg(1,USol,Prev))*-> - ( nb_setarg(1,USol,XX)) - ; (!, arg(1,USol,Prev))). - -catch_red(Term):- catch_err(Term,E,pp_m(red,in(Term,E))). -%catch_red(Term):- call(Term). - -s2p(I,O):- sexpr_s2p(I,O),!. - -discover_head(Self,Load,Head):- - ignore(([Fn|PredDecl]=Head, - nop(( arg_types(PredDecl,[],EachArg), - metta_anew1(Load,metta_head(Self,Fn,EachArg)))))). - -discover_body(Self,Load,Body):- - nop(( [Fn|PredDecl] = Body, arg_types(PredDecl,[],EachArg), - metta_anew1(Load,metta_body(Self,Fn,EachArg)))). - -decl_length(TypeDecL,Len):- is_list(TypeDecL),!,length(TypeDecL,Len). -decl_length(_TypeDecL,1). - -arg_types([['->'|L]],R,LR):-!, arg_types(L,R,LR). -arg_types(['->'|L],R,LR):-!, arg_types(L,R,LR). -arg_types(L,R,LR):- append(L,R,LR). - -%:- ensure_loaded('../../examples/factorial'). -%:- ensure_loaded('../../examples/fibonacci'). - -%:- abolish(system:notrace/1). -%system:notrace(G):- once(G). - -%print_preds_to_functs:-preds_to_functs_src(factorial_tail_basic) -ggtrace(G):- call(G). -ggtrace0(G):- ggtrace, - leash(-all), - visible(-all), - % debug, - %visible(+redo), - visible(+call), - visible(+exception), - maybe_leash(+exception), - setup_call_cleanup(trace,G,notrace). -:- dynamic(began_loon/1). -loon:- loon(typein). - - -catch_red_ignore(G):- catch_red(G)*->true;true. - -:- export(loon/1). -:- public(loon/1). - - -%loon(Why):- began_loon(Why),!,fbug(begun_loon(Why)). -loon(Why):- is_compiling,!,fbug(compiling_loon(Why)),!. -%loon( _Y):- current_prolog_flag(os_argv,ArgV),member('-s',ArgV),!. -% Why\==toplevel,Why\==default, Why\==program,! -loon(Why):- is_compiled, Why\==toplevel,!,fbug(compiled_loon(Why)),!. -loon(Why):- began_loon(_),!,fbug(skip_loon(Why)). -loon(Why):- fbug(began_loon(Why)), assert(began_loon(Why)), - do_loon. - -do_loon:- - ignore(( - \+ prolog_load_context(reloading,true), - maplist(catch_red_ignore,[ - - %if_t(is_compiled,ensure_metta_learner), - metta_final, - load_history, - update_changed_files, - run_cmd_args, - maybe_halt(7)]))),!. - - -need_interaction:- \+ option_value('had_interaction',true), - \+ is_converting, \+ is_compiling, \+ is_pyswip,!, - option_value('prolog',false), option_value('repl',false), \+ metta_file(_Self,_Filename,_Directory). - -pre_halt1:- is_compiling,!,fail. -pre_halt1:- loonit_report,fail. -pre_halt2:- is_compiling,!,fail. -pre_halt2:- option_value('prolog',true),!,set_option_value('prolog',started),call_cleanup(prolog,pre_halt2). -pre_halt2:- option_value('repl',true),!,set_option_value('repl',started),call_cleanup(repl,pre_halt2). -pre_halt2:- need_interaction, set_option_value('had_interaction',true),call_cleanup(repl,pre_halt2). - -%loon:- time(loon_metta('./examples/compat/test_scripts/*.metta')),fail. -%loon:- repl, (option_value('halt',false)->true;halt(7)). -%maybe_halt(Seven):- option_value('prolog',true),!,call_cleanup(prolog,(set_option_value('prolog',false),maybe_halt(Seven))). -%maybe_halt(Seven):- option_value('repl',true),!,call_cleanup(repl,(set_option_value('repl',false),maybe_halt(Seven))). -%maybe_halt(Seven):- option_value('repl',true),!,halt(Seven). -maybe_halt(_):- once(pre_halt1), fail. -maybe_halt(Seven):- option_value('repl',false),!,halt(Seven). -maybe_halt(Seven):- option_value('halt',true),!,halt(Seven). -maybe_halt(_):- once(pre_halt2), fail. -maybe_halt(Seven):- fbug(maybe_halt(Seven)). - -:- initialization(nb_setval(cmt_override,lse('; ',' !(" ',' ") ')),restore). - - -%needs_repl:- \+ is_converting, \+ is_pyswip, \+ is_compiling, \+ has_file_arg. -% libswipl: ['./','-q',--home=/usr/local/lib/swipl] - -:- initialization(show_os_argv). - -:- initialization(loon(program),program). -:- initialization(loon(default)). - -ensure_mettalog_system:- - abolish(began_loon/1), - dynamic(began_loon/1), - system:use_module(library(quasi_quotations)), - system:use_module(library(hashtable)), - system:use_module(library(gensym)), - system:use_module(library(sort)), - system:use_module(library(writef)), - system:use_module(library(rbtrees)), - system:use_module(library(dicts)), - system:use_module(library(shell)), - system:use_module(library(edinburgh)), - % system:use_module(library(lists)), - system:use_module(library(statistics)), - system:use_module(library(nb_set)), - system:use_module(library(assoc)), - system:use_module(library(pairs)), - user:use_module(library(swi_ide)), - user:use_module(library(prolog_profile)), - %metta_python, - %ensure_loaded('./metta_vspace/pyswip/flybase_convert'), - %ensure_loaded('./metta_vspace/pyswip/flybase_main'), - ensure_loaded(library(metta_python)), - ensure_loaded(library(flybase_convert)), - ensure_loaded(library(flybase_main)), - autoload_all, - make, - autoload_all, - %pack_install(predicate_streams, [upgrade(true),global(true)]), - %pack_install(logicmoo_utils, [upgrade(true),global(true)]), - %pack_install(dictoo, [upgrade(true),global(true)]), - !. - -file_save_name(E,_):- \+ atom(E),!,fail. -file_save_name(E,Name):- file_base_name(E,BN),BN\==E,!,file_save_name(BN,Name). -file_save_name(E,E):- atom_concat('Sav.',_,E),!. -file_save_name(E,E):- atom_concat('Bin.',_,E),!. -before_underscore(E,N):-atomic_list_concat([N|_],'_',E),!. -save_name(Name):- current_prolog_flag(os_argv,ArgV),member(E,ArgV),file_save_name(E,Name),!. -next_save_name(Name):- save_name(E), - before_underscore(E,N), - atom_concat(N,'_',Stem), - gensym(Stem,Name), - \+ exists_file(Name), - Name\==E,!. -next_save_name(SavMeTTaLog):- option_value(exeout,SavMeTTaLog),atomic(SavMeTTaLog),atom_length(SavMeTTaLog,Len),Len>1,!. -next_save_name('Sav.MeTTaLog'). -qcompile_mettalog:- - ensure_mettalog_system, - option_value(exeout,Named), - catch_err(qsave_program(Named, - [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(true)]),E,writeln(E)), - halt(0). -qsave_program:- ensure_mettalog_system, next_save_name(Name), - catch_err(qsave_program(Name, - [class(development),autoload(true),goal(loon(goal)), toplevel(loon(toplevel)), stand_alone(false)]),E,writeln(E)), - !. - - -:- initialization(update_changed_files,restore). - -:- ignore((( - \+ prolog_load_context(reloading,true), - initialization(loon(restore),restore), - metta_final -))). -:- set_prolog_flag(metta_interp,ready). diff --git a/metta_vspace/pyswip_lng/metta_interp.pl b/metta_vspace/pyswip_lng/metta_interp.pl new file mode 120000 index 00000000..d493688a --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_interp.pl @@ -0,0 +1 @@ +../pyswip/metta_interp.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_prelude.pl b/metta_vspace/pyswip_lng/metta_prelude.pl deleted file mode 100755 index 8594b787..00000000 --- a/metta_vspace/pyswip_lng/metta_prelude.pl +++ /dev/null @@ -1,242 +0,0 @@ -%;`$then`, `$else` should be of `Atom` type to avoid evaluation -%; and infinite cycle in inference -metta_type('&self',if,[ ->, 'Bool','Atom','Atom',_]). -metta_defn_ES([if,'True',A,_],A). -metta_defn_ES([if,'False',_,A],A). -metta_type('&self','Error',[->,'Atom','Atom','ErrorType']). -metta_defn_ES(['if-non-empty-expression',A,B,C],[ chain, - [ eval, - ['get-metatype',A]], - D, - [ eval, - [ 'if-equal', D,'Expression', - [ eval, - [ 'if-equal', A, [], C, B]], - C]]]). -metta_defn_ES([ 'if-decons', A,B,C,D, - E],[ eval, - [ 'if-non-empty-expression', - A, - [ chain, - [decons,A], - F, - [ match, - F, - [B,C], D,E]], - E]]). -metta_defn_ES(['if-empty',A,B,C],[ eval, - [ 'if-equal', A,'Empty',B,C]]). -metta_defn_ES(['if-error',A,B,C],[ eval, - [ 'if-decons', A,D,_, - [ eval, - [ 'if-equal', D,'Error',B,C]], - C]]). -metta_defn_ES(['return-on-error',A,B],[ eval, - [ 'if-empty', A,'Empty', - [ eval, - ['if-error',A,A,B]]]]). -metta_defn_ES([car,A],[ eval, - [ 'if-decons', A,B,_,B, - [ 'Error', - [car,A], - '$STRING'("car expects a non-empty expression as an argument")]]]). -metta_defn_ES([switch,A,B],[ chain, - [decons,B], - C, - [ eval, - ['switch-internal',A,C]]]). -metta_defn_ES([ 'switch-internal', - A, - [ [B,C], - D]],[ match, A,B,C, - [ eval, - [switch,A,D]]]). -metta_defn_ES([subst,A,B,C],[ match, A,B,C, - [ 'Error', - [subst,A,B,C], - '$STRING'("subst expects a variable as a second argument")]]). -metta_defn_ES([reduce,A,B,C],[ chain, - [eval,A], - D, - [ eval, - [ 'if-error', D,D, - [ eval, - [ 'if-empty', - D, - [ eval, - [subst,A,B,C]], - [ eval, - [reduce,D,B,C]]]]]]]). -metta_defn_ES(['type-cast',A,B,C],[ chain, - [ eval, - ['get-type',A,C]], - D, - [ eval, - [ switch, - [D,B], - [ [ ['%Undefined%',E], - A], - [ [E,'%Undefined%'], - A], - [ [B,E], - A], - [ E, - ['Error',A,'BadType']]]]]]). -metta_defn_ES(['is-function',A],[ chain, - [ eval, - ['get-metatype',A]], - B, - [ eval, - [ switch, - [A,B], - [ [ [C,'Expression'], - [ chain, - [ eval, - [car,A]], - D, - [ match, D,->,'True','False']]], - [C,'False']]]]]). -metta_defn_ES([interpret,A,B,C],[ chain, - [ eval, - ['get-metatype',A]], - D, - [ eval, - [ switch, - [B,D], - [ [ ['Atom',_], - A], - [ [D,D], - A], - [ [E,'Variable'], - A], - [ [E,'Symbol'], - [ eval, - ['type-cast',A,B,C]]], - [ [E,'Grounded'], - [ eval, - ['type-cast',A,B,C]]], - [ [E,'Expression'], - [ eval, - ['interpret-expression',A,B,C]]]]]]]). -metta_defn_ES(['interpret-expression',A,B,C],[ eval, - [ 'if-decons', A,D,_, - [ chain, - [ eval, - ['get-type',D,C]], - E, - [ chain, - [ eval, - ['is-function',E]], - F, - [ match, F,'True', - [ chain, - [ eval, - ['interpret-func',A,E,C]], - G, - [ eval, - [call,G,B,C]]], - [ chain, - [ eval, - ['interpret-tuple',A,C]], - G, - [ eval, - [call,G,B,C]]]]]], - [ eval, - ['type-cast',A,B,C]]]]). -metta_defn_ES(['interpret-func',A,B,C],[ eval, - [ 'if-decons', A,D,E, - [ chain, - [ eval, - [interpret,D,B,C]], - F, - [ eval, - [ 'return-on-error', - F, - [ eval, - [ 'if-decons', B,_,G, - [ chain, - [ eval, - [ 'interpret-args', A,E,G, - C]], - H, - [ eval, - [ 'return-on-error', - H, - [cons,F,H]]]], - [ 'Error', B,'$STRING'("Function type expected")]]]]]], - [ 'Error', - A, - '$STRING'("Non-empty expression atom is expected")]]]). -metta_defn_ES([ 'interpret-args', A,B,C,D],[ match, - B, - [], - [ match, - C, - [_], - [], - ['Error',A,'BadType']], - [ eval, - [ 'if-decons', B,E,F, - [ eval, - [ 'if-decons', C,G,H, - [ chain, - [ eval, - [interpret,E,G,D]], - I, - [ eval, - [ 'if-equal', I,E, - [ eval, - [ 'interpret-args-tail', A,I,F, - H,D]], - [ eval, - [ 'return-on-error', - I, - [ eval, - [ 'interpret-args-tail', A,I,F, - H,D]]]]]]], - ['Error',A,'BadType']]], - [ 'Error', - [ 'interpret-atom', A,B,C, - D], - '$STRING'("Non-empty expression atom is expected")]]]]). -%; check that head was changed otherwise Error or Empty in the head -%; can be just an argument which is passed by intention -metta_defn_ES([ 'interpret-args-tail', A,B,C,D, - E],[ chain, - [ eval, - [ 'interpret-args', A,C,D,E]], - F, - [ eval, - [ 'return-on-error', - F, - [cons,B,F]]]]). -metta_defn_ES(['interpret-tuple',A,B],[ match, - A, - [], - A, - [ eval, - [ 'if-decons', A,C,D, - [ chain, - [ eval, - [interpret,C,'%Undefined%',B]], - E, - [ chain, - [ eval, - ['interpret-tuple',D,B]], - F, - [cons,E,F]]], - [ 'Error', - ['interpret-tuple',A,B], - '$STRING'("Non-empty expression atom is expected as an argument")]]]]). -metta_defn_ES([call,A,B,C],[ chain, - [eval,A], - D, - [ eval, - [ 'if-empty', D,A, - [ eval, - [ 'if-error', D,D, - [ eval, - [interpret,D,B,C]]]]]]]). -% 1,264,919 inferences, 0.139 CPU in 0.140 seconds (99% CPU, 9074539 Lips) -% (= metta_prelude.metta 0) - diff --git a/metta_vspace/pyswip_lng/metta_prelude.pl b/metta_vspace/pyswip_lng/metta_prelude.pl new file mode 120000 index 00000000..3fc39d84 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_prelude.pl @@ -0,0 +1 @@ +../pyswip/metta_prelude.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_printer.pl b/metta_vspace/pyswip_lng/metta_printer.pl deleted file mode 100755 index 44c1bbe6..00000000 --- a/metta_vspace/pyswip_lng/metta_printer.pl +++ /dev/null @@ -1,143 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). - -% =============================== -% PRINTERS -% =============================== -% 'ppc' and 'ppc1' rules pretty-print original terms and convert them to metta if different, -% printing the converted forms as well. -ppc(Msg,Term):- ppc1(Msg,Term), p2m(Term,MeTTa),!, (MeTTa\==Term -> ppc1(p2m(Msg),MeTTa) ; true). - -ppc1(Msg,Term):- \+ \+ ( ppct(Msg,Term) ),!. - -ppc1(Msg,Term):- \+ \+ ( ignore(guess_pretty(Term)), - writeln('---------------------'), - write(p(Msg)),write(':'),nl, - portray_clause(Term), - writeln('---------------------'), - \+ \+ (print_tree(?-show_cvts(Term))),nl, - writeln('---------------------'), - write(s(Msg)),write(':'),nl, - write_src(Term),nl). - -ppct(Msg,Term):- is_list(Term),!, - writeln('---------------------'), - numbervars(Term,666,_,[attvar(bind)]), - write((Msg)),write(':'),nl, - write_src(Term),nl. -ppct(Msg,Term):- Term=(_ :- _),!, - writeln('---------------------'), - write((Msg)),write(':'),nl, - portray_clause(Term),nl. -ppct(Msg,Term):- Term=(_=_),!, - writeln('---------------------'), - write((Msg)),write(':'),nl, - numbervars(Term,444,_,[attvar(bind)]), - write_src(Term),nl. -ppct(Msg,Term):- Term=(_ :- _),!, - writeln('---------------------'), - write((Msg)),write(':'),nl, - numbervars(Term,222,_,[attvar(bind)]), - print_tree(Term),nl. - -% 'pp_metta' rule is responsible for pretty-printing metta terms. -pp_metta(P):- pretty_numbervars(P,PP),with_option(concepts=false,pp_fb(PP)). - -% The predicate with_indents/2 modifies the src_indents option value during the execution of a goal. -% The first argument is the desired value for src_indents, -% and the second argument is the Goal to be executed with the given src_indents setting. -with_indents(TF, Goal) :- - % Set the value of the `src_indents` option to TF and then execute the Goal - with_option(src_indents, TF, Goal). - -% The predicate allow_concepts/0 checks whether the use of concepts is allowed. -% It does this by checking the value of the concepts option and ensuring it is not false. -allow_concepts :- !, fail, - % Check if the option `concepts` is not set to false - option_else(concepts, TF, 'False'), - \+ TF == 'False'. - -% The predicate with_concepts/2 enables or disables the use of concepts during the execution of a given goal. -% The first argument is a Boolean indicating whether to enable (true) or disable (false) concepts. -% The second argument is the Goal to be executed with the given concepts setting. -with_concepts(TF, Goal) :- - % Set the value of the `concepts` option to TF and then execute the Goal - with_option(concepts, TF, Goal). - - -% Various 'write_src' and 'write_src0' rules are handling the writing of the source, -% dealing with different types of values, whether they are lists, atoms, numbers, strings, compounds, or symbols. -write_src(V):- notrace(write_src0(V)). -write_src0(V):- V ==[],!,write('()'). -write_src0(V):- allow_concepts,!,with_concepts('False',write_src1(V)),flush_output. -write_src0(V):- is_list(V),!,pp_sexi(V). -write_src0(V):- write_src1(V),!. - -% Handling the final write when the value is a variable or a '$VAR' structure. -is_final_write(V):- var(V), !, format('$~p',[V]). -is_final_write('$VAR'(S)):- !, write('$'),write(S). - -% Handling more cases for 'write_src1', when the value is a number, a string, a symbol, or a compound. -write_src1(V) :- is_final_write(V),!. -write_src1((Head:-Body)) :- !, print_metta_clause0(Head,Body). -write_src1(''):- !, write('()'). -write_src1(V):- number(V),!, writeq(V). -write_src1(V):- string(V),!, writeq(V). - -% Continuing with 'write_src1', 'write_mobj', and related rules, -% handling different cases based on the value’s type and structure, and performing the appropriate writing action. -write_src1(V):- symbol(V), should_quote(V),!, - symbol_string(V,S),writeq(S). -write_src1(V):- symbol(V),!,write(V). -write_src1(V):- compound(V), \+ is_list(V),!,write_mobj(V). -write_src1(V):- pp_sex(V),!. - -write_mobj(V) :- is_final_write(V),!. -write_mobj(V):- ( \+ compound(V) ; is_list(V)),!, write_src0(V). - -write_mobj(V):- compound_name_list(V,F,Args),write_mobj(F,Args),!. -write_mobj(V):- writeq(V). -write_mobj(exec,[V]):- !, write('!'),write_src(V). -write_mobj('$OBJ',[_,S]):- write('['),write_src(S),write(' ]'). -write_mobj('{...}',[S]):- write('{'),write_src(S),write(' }'). -write_mobj('[...]',[S]):- write('['),write_src(S),write(' ]'). -write_mobj('$STRING',[S]):- !, writeq(S). -write_mobj(F,Args):- fail, mlog_sym(K),!,pp_sexi([K,F|Args]). -write_mobj(F,Args):- pp_sexi([F|Args]). - -% Rules for determining when a symbol needs to be quoted in metta. -dont_quote(Atom):- atom_length(Atom,1), !, char_type(Atom,punct). -dont_quote(Atom):- atom(Atom),upcase_atom(Atom,Atom),downcase_atom(Atom,Atom). - -should_quote(Atom) :- \+ atom(Atom), \+ string(Atom),!,fail. -should_quote(Atom) :- - \+ dont_quote(Atom), - % atom(Atom), % Ensure that the input is an atom - atom_chars(Atom, Chars), - once(should_quote_chars(Chars);should_quote_atom_chars(Atom,Chars)). - -contains_unescaped_quote(['"']):- !, fail. % End with a quote -contains_unescaped_quote(['"'|_]) :- !. -contains_unescaped_quote(['\\', '"'|T]) :- !, contains_unescaped_quote(T). -contains_unescaped_quote([_|T]) :- contains_unescaped_quote(T). - -% Check if the list of characters should be quoted based on various conditions -should_quote_chars([]). -should_quote_chars(['"'|Chars]):- !, contains_unescaped_quote(Chars). -should_quote_chars(Chars) :- - member('"', Chars); % Contains quote not captured with above clause - member(' ', Chars); % Contains space - member('''', Chars); % Contains single quote - % member('/', Chars); % Contains slash - member(',', Chars); % Contains comma - (fail,member('|', Chars)). % Contains pipe -%should_quote_atom_chars(Atom,_) :- atom_number(Atom,_),!. -should_quote_atom_chars(Atom,[Digit|_]) :- fail, char_type(Digit, digit), \+ atom_number(Atom,_). - -% Example usage: -% ?- should_quote('123abc'). -% true. -% ?- should_quote('123.456'). -% false. - diff --git a/metta_vspace/pyswip_lng/metta_printer.pl b/metta_vspace/pyswip_lng/metta_printer.pl new file mode 120000 index 00000000..57532dce --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_printer.pl @@ -0,0 +1 @@ +../pyswip/metta_printer.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_python.pl b/metta_vspace/pyswip_lng/metta_python.pl deleted file mode 100755 index 402ba431..00000000 --- a/metta_vspace/pyswip_lng/metta_python.pl +++ /dev/null @@ -1,314 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). -%:- '$set_source_module'('user'). -/* -# Core in Rust -In the original version, the core logic and functionalities of the MeTTa system are implemented in Rust. Rust is known for its performance and safety features, making it a suitable choice for building robust, high-performance systems. - -# Python Extensions -Python is used to extend or customize MeTTa. Typically, Python interacts with the Rust core through a Foreign Function Interface (FFI) or similar bridging mechanisms. This allows Python programmers to write code that can interact with the lower-level Rust code, while taking advantage of Python's ease of use and rich ecosystem. - -# Prolog Allows Python Extensions -Just like the Rust core allowed for Python extensions, the Prolog code also permits Python and Rust developers (thru python right now) to extend or customize parts of MeTTa. This maintains the system?s extensibility and allows users who are more comfortable with Python to continue working with the system effectively. - -*/ - - -:- use_module(library(janus)). -:- use_module(library(filesex)). - -:- multifile(is_python_space/1). -:- dynamic(is_python_space/1). -:- volatile(is_python_space/1). - -is_rust_space(GSpace):- is_python_space(GSpace). - -is_not_prolog_space(GSpace):- is_rust_space(GSpace), !. -is_not_prolog_space(GSpace):- \+ is_asserted_space(GSpace), \+ is_nb_space(GSpace), !. - -with_safe_argv(Goal):- - current_prolog_flag(argv,Was), - setup_call_cleanup(set_prolog_flag(argv,[]),Goal,set_prolog_flag(argv,Was)). - -ensure_space_py(Space,GSpace):- py_is_object(Space),!,GSpace=Space. -ensure_space_py(Space,GSpace):- var(Space),ensure_primary_metta_space(GSpace), Space=GSpace. -ensure_space_py(metta_self,GSpace):- ensure_primary_metta_space(GSpace),!. - -:- dynamic(is_metta/1). -:- volatile(is_metta/1). -ensure_rust_metta(MeTTa):- is_metta(MeTTa),!. -ensure_rust_metta(MeTTa):- - with_safe_argv(py_call(hyperon:'MeTTa'(),MeTTa)), - asserta(is_metta(MeTTa)). - -ensure_rust_metta:- ensure_rust_metta(_). - -:- dynamic(is_metta_learner/1). -:- volatile(is_metta_learner/1). -ensure_metta_learner(Metta_Learner):- is_metta_learner(Metta_Learner),!. -ensure_metta_learner(Metta_Learner):- - with_safe_argv(py_call(metta_vspace:'metta_learner':'MettaLearner'(),Metta_Learner)), - asserta(is_metta_learner(Metta_Learner)). - - -:- multifile(space_type_method/3). -:- dynamic(space_type_method/3). -space_type_method(is_not_prolog_space,new_space,new_rust_space). -space_type_method(is_not_prolog_space,add_atom,add_to_space). -space_type_method(is_not_prolog_space,remove_atom,remove_from_space). -space_type_method(is_not_prolog_space,replace_atom,replace_in_space). -space_type_method(is_not_prolog_space,atom_count,atom_count_from_space). -space_type_method(is_not_prolog_space,get_atoms,query_from_space). -space_type_method(is_not_prolog_space,atom_iter,atoms_iter_from_space). -space_type_method(is_not_prolog_space,query,query_from_space). - -:- dynamic(is_primary_metta_space/1). -:- volatile(is_primary_metta_space/1). -% Initialize a new hyperon.base.GroundingSpace and get a reference -ensure_primary_metta_space(GSpace) :- is_primary_metta_space(GSpace),!. -ensure_primary_metta_space(GSpace) :- ensure_rust_metta(MeTTa), - with_safe_argv(py_call(MeTTa:space(),GSpace)), - asserta(is_primary_metta_space(GSpace)). -ensure_primary_metta_space(GSpace) :- new_rust_space(GSpace). -ensure_primary_metta_space:- ensure_primary_metta_space(_). - -:- if( \+ current_predicate(new_rust_space/1 )). -% Initialize a new hyperon.base.GroundingSpace and get a reference -new_rust_space(GSpace) :- - with_safe_argv(py_call(hyperon:base:'GroundingSpace'(), GSpace)), - asserta(is_python_space(GSpace)). -:- endif. - -:- if( \+ current_predicate(query_from_space/3 )). -% Query from hyperon.base.GroundingSpace -query_from_space(Space, QueryAtom, Result) :- - ensure_space(Space,GSpace), - py_call(GSpace:'query'(QueryAtom), Result). - - -% Replace an atom in hyperon.base.GroundingSpace -replace_in_space(Space, FromAtom, ToAtom) :- - ensure_space(Space,GSpace), - py_call(GSpace:'replace'(FromAtom, ToAtom), _). - -% Get the atom count from hyperon.base.GroundingSpace -atom_count_from_space(Space, Count) :- - ensure_space(Space,GSpace), - py_call(GSpace:'atom_count'(), Count). - -% Get the atoms from hyperon.base.GroundingSpace -atoms_from_space(Space, Atoms) :- - ensure_space(Space,GSpace), - py_call(GSpace:'get_atoms'(), Atoms). - -atom_from_space(Space, Sym):- - atoms_iter_from_space(Space, Atoms),elements(Atoms,Sym). - -% Get the atom iterator from hyperon.base.GroundingSpace -atoms_iter_from_space(Space, Atoms) :- - ensure_space(Space,GSpace), - with_safe_argv(py_call(metta_vspace:'metta_learner':get_atoms_iter_from_space(GSpace),Atoms)), - %py_call(GSpace:'atoms_iter'(), Atoms). - true. -:- endif. - -py_to_pl(I,O):- py_to_pl(_,I,O). -py_to_pl(VL,I,O):- ignore(VL=[vars]), py_to_pl(VL,[],[],_,I,O),!. -is_var_or_nil(I):- var(I),!. -is_var_or_nil([]). -%py_to_pl(VL,Par,_Cir,_,L,_):- fbug(py_to_pl(VL,Par,L)),fail. -py_to_pl(_VL,_Par,Cir,Cir,L,E):- var(L),!,E=L. -py_to_pl(_VL,_Par,Cir,Cir,L,E):- L ==[],!,E=L. -py_to_pl(_VL,_Par,Cir,Cir,L,E):- member(N-NE,Cir), N==L, !, (E=L;NE=E), !. -py_to_pl(_VL,_Par,Cir,Cir, LORV:_B:_C,LORV):- is_var_or_nil(LORV), !. -py_to_pl(VL,Par,Cir,CirO,[H|T]:B:C,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B:C,HH), py_to_pl(VL,Par,CirM,CirO,T:B:C,TT). -py_to_pl(_VL,_Par,Cir,Cir, LORV:_B,LORV):- is_var_or_nil(LORV), !. -py_to_pl(VL,Par,Cir,CirO,[H|T]:B,[HH|TT]):- py_to_pl(VL,Par,Cir,CirM,H:B,HH), py_to_pl(VL,Par,CirM,CirO,T:B,TT). -py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R:C,AB). -py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),py_to_pl(VL,Par,Cir,CirO,R,AB). -py_to_pl(VL,Par,Cir,CirO,A:B,AA:BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). -py_to_pl(VL,Par,Cir,CirO,A-B,AA-BB):- !, py_to_pl(VL,Par,Cir,CirM,A,AA),py_to_pl(VL,Par,CirM,CirO,B,BB). -py_to_pl(_VL,_Par,Cir,Cir,L,E):- atom(L),!,E=L. -py_to_pl(VL,Par,Cir,CirO,[H|T],[HH|TT]):- !, py_to_pl(VL,Par,Cir,CirM,H,HH), py_to_pl(VL,Par,CirM,CirO,T,TT). -py_to_pl(VL,Par,Cir,CirO,O,E):- py_is_object(O),py_class(O,Cl),!,pyo_to_pl(VL,Par,[O=E|Cir],CirO,Cl,O,E). -py_to_pl(VL,Par,Cir,CirO,L,E):- is_dict(L,F),!,dict_pair(L,F,NV),!,py_to_pl(VL,Par,Cir,CirO,NV,NVL),dict_pair(E,F,NVL). -py_to_pl(_VL,_Par,Cir,Cir,L,E):- \+ callable(L),!,E=L. -%py_to_pl(VL,Par,Cir,CirO,A:B:C,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R:C,AB). -%py_to_pl(VL,Par,Cir,CirO,A:B,AB):- py_is_object(A),callable(B),py_call(A:B,R),!, py_to_pl(VL,Par,[A:B-AB|Cir],CirO,R,AB). -py_to_pl(VL,Par,Cir,CirO,A,AA):- compound(A),!,compound_name_arguments(A,F,L),py_to_pl(VL,Par,Cir,CirO,L,LL),compound_name_arguments(AA,F,LL). -py_to_pl(_VL,_Par,Cir,Cir,E,E). -/* -varname_to_real_var(RL,E):- upcase_atom(RL,R),varname_to_real_var0(R,E). -varname_to_real_var0(R,E):- nb_current('cvariable_names',VL),!,varname_to_real_var0(R,VL,E). -varname_to_real_var0(R,E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). -varname_to_real_var0(R,[],E):- nb_setval('cvariable_names',[R=v(_)]),!,varname_to_real_var0(R,E). -varname_to_real_var0(R,VL,E):- member(N=V,VL), N==R,!,arg(1,V,E). -varname_to_real_var0(R,VL,E):- extend_container(VL,R=v(_)),varname_to_real_var0(R,E).*/ -% Predicate to extend the list inside the container -extend_container(Container, Element) :- - arg(2, Container, List), - nb_setarg(2, Container, [Element|List]). - -rinto_varname(R,RN):- atom_number(R,N),atom_concat('Num',N,RN). -rinto_varname(R,RN):- upcase_atom(R,RN). -real_VL_var(RL,VL,E):- nonvar(RL), !, rinto_varname(RL,R),!,real_VL_var0(R,VL,E). -real_VL_var(RL,VL,E):- member(N=V,VL), V==E,!,RL=N. -real_VL_var(RL,VL,E):- compound(E),E='$VAR'(RL),ignore(real_VL_var0(RL,VL,E)),!. -real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), member(N=V,VL), N==RL,!,V=E. -real_VL_var(RL,VL,E):- format(atom(RL),'~p',[E]), real_VL_var0(RL,VL,E). -real_VL_var0(R,VL,E):- member(N=V,VL), N==R,!,V=E. -real_VL_var0(R,VL,E):- extend_container(VL,R=E),!. % ,E='$VAR'(R). - -pyo_to_pl(VL,_Par,Cir,Cir,Cl,O,E):- Cl=='VariableAtom', !, py_call(O:get_name(),R), real_VL_var(R,VL,E),!. -pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl1(Par,Cl,M),py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). -pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- class_to_pl(Par,Cl,M), % fbug(class_to_pl(Par,Cl,M)), - py_member_values(O,M,R), !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E). -pyo_to_pl(VL,Par,Cir,CirO,Cl,O,E):- catch(py_obj_dir(O,L),_,fail),fbug(py_obj_dir(O,L)),py_decomp(M),meets_dir(L,M),fbug(py_decomp(M)), - py_member_values(O,M,R), member(N-_,Cir), R\==N, !, py_to_pl(VL,[Cl|Par],Cir,CirO,R,E),!. - -pl_to_py(Var,Py):- pl_to_py(_VL,Var,Py). -pl_to_py(VL,Var,Py):- var(VL),!,ignore(VL=[vars]),pl_to_py(VL,Var,Py). -pl_to_py(_VL,Sym,Py):- is_list(Sym),!, maplist(pl_to_py,Sym,PyL), py_call(metta_vspace:'metta_learner':'MkExpr'(PyL),Py),!. -pl_to_py(VL,Var,Py):- var(Var), !, real_VL_var(Sym,VL,Var), py_call('hyperon.atoms':'V'(Sym),Py),!. -pl_to_py(VL,'$VAR'(Sym),Py):- !, real_VL_var(Sym,VL,_),py_call('hyperon.atoms':'V'(Sym),Py),!. -pl_to_py(VL,DSym,Py):- atom(DSym),atom_concat('$',VName,DSym), rinto_varname(VName,Sym),!, pl_to_py(VL,'$VAR'(Sym),Py). -pl_to_py(_VL,Sym,Py):- atom(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. -pl_to_py(_VL,Sym,Py):- string(Sym),!, py_call('hyperon.atoms':'S'(Sym),Py),!. -%pl_to_py(VL,Sym,Py):- is_list(Sym), maplist(pl_to_py,Sym,PyL), py_call('hyperon.atoms':'E'(PyL),Py),!. -pl_to_py(_VL,Sym,Py):- py_is_object(Sym),py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. -pl_to_py(_VL,Sym,Py):- py_call('hyperon.atoms':'ValueAtom'(Sym),Py),!. - -%elements(Atoms,E):- is_list(Atoms),!, -meets_dir(L,M):- atom(M),!,member(M,L),!. -meets_dir(L,M):- is_list(M),!,maplist(meets_dir(L),M). -meets_dir(L,M):- compound_name_arity(M,N,0),!,member(N,L),!. -meets_dir(L,M):- compound(M),!,compound_name_arguments(M,F,[A|AL]),!,maplist(meets_dir(L),[F,A|AL]). - -py_member_values(O,C,R):- is_list(O),!,maplist(py_member_values,O,C,R). -py_member_values(O,C,R):- is_list(C),!,maplist(py_member_values(O),C,R). -%py_member_values(O,C,R):- atom(C),!,compound_name_arity(CC,C,0),!,py_call(O:CC,R). -py_member_values(O,f(F,AL),R):- !,py_member_values(O,[F|AL],[RF|RAL]), compound_name_arguments(R,RF,RAL). -py_member_values(O,C,R):- py_call(O:C,R,[py_string_as(atom),py_object(false)]). - -py_to_str(PyObj,Str):- - with_output_to(string(Str),py_pp(PyObj,[nl(false)])). - - tafs:- - atoms_from_space(Space, _),py_to_pl(VL,Space,AA), print_tree(aa(Pl,aa)),pl_to_py(VL,AA,Py), print_tree(py(Pl,py)),pl_to_py(VL,Py,Pl),print_tree(pl(Pl,pl)) - , - atoms_from_space(Space, [A]),py_to_pl(VL,A,AA), - atoms_from_space(Space, [A]),py_obj_dir(A,D),writeq(D),!,py_to_pl(VL,D:get_object(),AA),writeq(AA),!,fail. - -py_class(A,AA):- py_call(A:'__class__',C), py_call(C:'__name__',AA,[py_string_as(atom)]),!. -py_decomp(M,C):- py_decomp(M), compound_name_arity(C,M,0). - - -class_to_pl1(_Par,'GroundingSpaceRef',get_atoms()). -class_to_pl1(_Par,'ExpressionAtom',get_children()). -class_to_pl1(_Par,'SpaceRef',get_atoms()). -class_to_pl1(_Par,'VariableAtom','__repr__'()). -class_to_pl1(_Par,'SymbolAtom',get_name()). -class_to_pl1(_Par,'bool','__repr__'()). -class_to_pl(_Par,'ValueAtom','__repr__'()). -class_to_pl(_Par,'ValueObject','value'). -class_to_pl(Par,'GroundedAtom','__repr__'()):- length(Par,Len),Len>=5,!. -class_to_pl(Par,_,'__str__'()):- length(Par,Len),Len>15,!. -class_to_pl(_Par,'GroundedAtom',get_object()). - -/* - - -class_to_pl(Par,'bool','__repr__'()). - -*/ -py_decomp('__repr__'()). -py_decomp('__str__'()). -py_decomp(get_atoms()). -py_decomp(get_children()). -py_decomp(get_object()). -py_decomp(get_name()). -py_decomp(value()). - -py_decomp('__class__':'__name__'). -%py_decomp(f(get_grounded_type(),['__str__'()])). -py_decomp(f('__class__',['__str__'()])). -%__class__ -%get_type() - -%atoms_from_space(Space, [Atoms]),py_pp(Atoms),py_call(Atoms:get_object(),A),atoms_from_space(A,Dir),member(E,Dir),py_obj_dir(E,C),py_call(E:get_children(),CH),py_pp(CH). - - -% Remove an atom from hyperon.base.GroundingSpace -:- if( \+ current_predicate(remove_from_space/2 )). -remove_from_space(Space, Sym) :- - ensure_space(Space,GSpace), - py_call(GSpace:'remove'(Sym), _). -:- endif. - -% Add an atom to hyperon.base.GroundingSpace -:- if( \+ current_predicate(add_to_space/2 )). -add_to_space(Space, Sym) :- - ensure_space(Space,GSpace), - py_call(GSpace:'add'(Sym), _). -:- endif. - - -'extend-py!'(Module,_):- - with_safe_argv(( - %listing(ensure_rust_metta/1), - ensure_metta_learner, - fbug('extend-py!'(Module)), - ensure_rust_metta(MeTTa), - replace_in_string(["/"="."],Module,ToPython), - py_call(MeTTa:load_py_module(ToPython),Result), - fbug(result(MeTTa->Result)))),!. - -ensure_metta_learner:- - with_safe_argv(ensure_metta_learner(Learner)), - fbug(ensure_metta_learner(Learner)). - -% Example usage -example_usage :- - with_safe_argv(ensure_primary_metta_space(GSpace)), - %some_query(Query), - Query = [], - with_safe_argv(query_from_space(GSpace, Query , Result)), - writeln(Result). - -%atoms_from_space(Sym):- atoms_iter_from_space(metta_self, Atoms),py_iter(Atoms,Sym). -atom_count_from_space(Count):- atom_count_from_space(metta_self, Count). - - -%:- . -%:- ensure_rust_metta. -%:- with_safe_argv(ensure_primary_metta_space(_GSpace)). -/* -Rust: The core of MeTTa is implemented in Rust, which provides performance and safety features. - -Python Extensions: Python is used for extending the core functionalities. Python communicates with Rust via a Foreign Function Interface (FFI) or similar mechanisms. - -Prolog: The Prolog code is an additional layer that allows you to extend or customize parts of MeTTa using Python and Rust. It maintains the system's extensibility. - - -VSpace is a space with its backend in Prolog, it implies that you're using Prolog's logic programming capabilities to manage and manipulate a particular domain, which in this context is referred to as a "space" (possibly akin to the GroundingSpace in Python, but implemented in Prolog). - -To integrate VSpace with the existing Python and Rust components, similar interfacing techniques could be used. You could expose Prolog predicates as functions that can be called from Python or Rust, and likewise, call Python or Rust functions from within Prolog. - - -*/ - -%:- ensure_loaded(metta_interp). -on_restore1:- ensure_metta_learner. - -:- dynamic(want_py_lib_dir/1). -:- prolog_load_context(directory, ChildDir), - file_directory_name(ChildDir, ParentDir), - file_directory_name(ParentDir, GParentDir), - assert(want_py_lib_dir(GParentDir)). - -want_py_lib_dir:- - with_safe_argv(forall(want_py_lib_dir(GParentDir), py_add_lib_dir(GParentDir))). - -%:- initialization(on_restore1,restore). -%:- initialization(on_restore2,restore). diff --git a/metta_vspace/pyswip_lng/metta_python.pl b/metta_vspace/pyswip_lng/metta_python.pl new file mode 120000 index 00000000..5453e3b4 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_python.pl @@ -0,0 +1 @@ +../pyswip/metta_python.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_reader.pl b/metta_vspace/pyswip_lng/metta_reader.pl deleted file mode 100755 index 58c76bdd..00000000 --- a/metta_vspace/pyswip_lng/metta_reader.pl +++ /dev/null @@ -1,1616 +0,0 @@ -/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Parsing -- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ -%:- encoding(iso_latin_1). -:- if(flush_output). :- endif. -:- if(setenv('RUST_BACKTRACE',full)). :- endif. -%:- if(\+ current_module(sxpr_reader)). -:- if( (false, \+ current_prolog_flag(wamcl_modules,false))). -:- module(s3xpr,[ - parse_sexpr/2, - codelist_to_forms/2, - svar_fixvarname/2, - parse_sexpr_untyped/2, - with_kifvars/1, - current_input_to_forms/2, - input_to_forms/2, - input_to_forms/3, - input_to_forms_debug/1, - input_to_forms_debug/2, - sexpr_sterm_to_pterm_list/3, - sexpr//1, - fixvars/4, - txt_to_codes/2, - quietly_sreader/1, - file_sexpr_with_comments//1, - with_lisp_translation/2, - to_untyped/2, - ok_var_name/1, - with_all_rest_info/1, - svar_fixvarname/2, - sexpr_sterm_to_pterm/2, - lisp_read/2, - phrase_from_stream_nd/2, - write_trans/4, - parse_sexpr/2]). -:- endif. - -:- ensure_loaded(swi_support). -:- ensure_loaded(metta_utils). -:- ensure_loaded(metta_testing). -:- set_prolog_flag(encoding,iso_latin_1). -is_wam_cl:- fail. - -:- use_module(library(backcomp)). -:- use_module(library(rbtrees)). - - -:- use_module(library(logicmoo/dcg_must)). -:- use_module(library(logicmoo/dcg_meta)). - - -%:- meta_predicate always_b(//,?,?). -%:- meta_predicate bx(0). -:- meta_predicate call_proc(1,?). -:- meta_predicate dcg_and2(//,//,?,?). -:- meta_predicate dcg_each_call_cleanup(0,//,0,?,?). -:- meta_predicate dcg_not(//,?,?). -:- meta_predicate dcg_phrase(//,?,?). -:- meta_predicate dcg_xor(//,//,?,?). -%:- meta_predicate expr_with_text(*,2,*,*,*). - -:- meta_predicate remove_optional_char(//,?,?). - -:- meta_predicate sexpr_vector0(*,//,?,?). -:- meta_predicate with_all_rest_info(1). -:- meta_predicate with_lisp_translation_stream(*,1). -:- meta_predicate write_trans(+,*,2,?). - -%:- assert((s3xpr:'$exported_op'(_,_,_):- fail)). -%:- assert((xlisting:'$exported_op'(_,_,_):- fail)). -:- assert((user:'$exported_op'(_,_,_):- fail)). -:- abolish((system:'$exported_op'/3)). -:- assert((system:'$exported_op'(_,_,_):- fail)). - -def_is_characterp(CH):- current_predicate(is_characterp/1),!,call(call,is_characterp,CH). -def_is_characterp_def('#\\'(_)). - -def_to_prolog_string(I,O):- current_predicate(to_prolog_string/2),!,call(call,to_prolog_string,I,O). -def_to_prolog_string(I,O):- any_to_string(I,O). - - -def_compile_all(I,O):- current_predicate(compile_all/2),!,call(call,compile_all,I,O). -def_compile_all(I,O):- fbug(undefined_compile_all(I)),I=O. - - -zalwayzz(G):- call(G)*->true;throw(fail_zalwayzz(G)). -zalwayzz(G,I,O):- phrase(G,I,O)*->true;ignore(((ignore((append(I,[],Txt),name(Str,Txt))),throw(fail_zalwayzz(Str,G))))). - - -% DCG rules for S-expressions metta_with metta_whitespace and comments -s_expr_metta(List) --> metta_wspace,!, s_expr_metta(List). -s_expr_metta(List) --> `(`, !, items_metta(List, `)`). -s_expr_metta(['[...]',List]) --> `[`, !, items_metta(List, `]`). -s_expr_metta(['{...}',List]) --> `{`, !, items_metta(List, `}`). - - -items_metta([], Until) --> Until,!. -items_metta([Item|Rest], Until) --> s_item_metta(Item, dcg_peek(Until)), !, items_metta(Rest, Until). - -%s_line_metta(end_of_file) --> file_eof,!. -s_line_metta(Expr) --> metta_wspace, !, s_line_metta(Expr). -s_line_metta(exec(Expr)) --> `!`, !, s_item_metta(Expr, e_o_s). -s_line_metta(Expr) --> s_item_metta(Expr, e_o_s). - -%s_item_metta(end_of_file, _) --> file_eof,!. -s_item_metta(Expr, Until) --> metta_wspace, !, s_item_metta(Expr, Until). -%s_item_metta('Expr', Until) --> Until,!. -s_item_metta(List,_Until) --> s_expr_metta(List),!. -s_item_metta(String,_Until) --> string_metta(String),!. -s_item_metta(Symbol, Until) --> symbol_metta(Symbol, Until). - -:- encoding(iso_latin_1). -%string_metta(S) --> `"`, !, string_until_metta(S, `"`), {atomics_to_string_metta(A,S)}. -%string_metta(Text) --> `"`, !, zalmetta_wayzz_metta(string_until_metta(Text,`"`)),!. -%string_metta(Text) --> `“`, !, zalmetta_wayzz_metta(string_until_metta(Text,(`”`;`“`))),!. -string_metta(Text) --> (`"`), string_until_metta(L,(`"`)), {atomics_to_string(L,Text)}, !. -string_metta(Text) --> (`”`;`“`;`"`), !, string_until_metta(L,(`“`;`”`;`"`)), {atomics_to_string(L,Text)}. -:- encoding(utf8). -%string_metta(Text) --> `#|`, !, zalmetta_wayzz_metta(string_until_metta(Text,`|#`)),!. - -% string_until_metta([], _) --> e_o_s, !. -%string_until_metta([], _) --> file_eof,!. -string_until_metta([], Until) --> Until, !. -string_until_metta([C|Cs], Until) --> escape_sequence_metta(C), !, string_until_metta(Cs, Until). -string_until_metta([C|Cs], Until) --> [R], { name(C, [R]) }, string_until_metta(Cs, Until). - -escape_sequence_metta(Char) --> `\\`,[Esc], { escape_char_metta([Esc], Char) }. -escape_char_metta(`"`, "\""). -escape_char_metta(`\\`, "\\"). -escape_char_metta(`n`, "\n"). -escape_char_metta(`r`, "\r"). -escape_char_metta(`t`,"\t"). -escape_char_metta(C,S):- sformat(S,'~s',[[C]]). - -symbol_metta(S, Until) --> metta_wspace,!,symbol_metta(S, Until). -symbol_metta(S, Until) --> string_until_metta(SChars,(dcg_peek(metta_white); Until)), { atomic_list_concat(SChars, S) }. - -%comment --> `;`,!,comment_chars_metta(S). -comment_chars_metta(S) --> string_until_metta(SChars,`\n`), { atomic_list_concat(SChars, S) }. - -%e_o_s --> file_eof,!. -e_o_s --> \+ [_|_]. - -%metta_ws --> e_o_s,!. -metta_ws --> metta_wspace, !, metta_ws. -metta_ws --> []. -metta_wspace --> `;`,!, comment_chars_metta(S), {assert(comment_metta(S))}. -metta_wspace --> metta_white. -metta_white --> [W], { char_type(W, white) }, !. - - - -%:- meta_predicate(always(0)). -%always(G):- must(G). - -:- use_module(library(logicmoo/filestreams)). -%:- use_module(library(bugger)). - -:- if(exists_file('./header')). -% :- include('./header'). -:- endif. -%:- use_module(eightball). - -:- thread_local(t_l:sreader_options/2). -kif_ok:- t_l:sreader_options(logicmoo_read_kif,TF),!,TF==true. - -with_kif_ok(G):- - locally(t_l:sreader_options(logicmoo_read_kif,true),G). - -with_kif_not_ok(G):- - locally(t_l:sreader_options(logicmoo_read_kif,false),G). - - -:- meta_predicate((with_lisp_translation(+,1),input_to_forms_debug(+,:))). -:- meta_predicate sexpr_vector(*,//, - ?,?). - - -:- dynamic user:file_search_path/2. -:- multifile user:file_search_path/2. - -:- thread_local(t_l:s_reader_info/1). - -:- meta_predicate(quietly_sreader(0)). -%quietly_sreader(G):- quietly(G). -quietly_sreader(G):- !, call(G). - -%% with_lisp_translation( +FileOrStream, :Pred1) is det. -% -% With File or Stream read all S-expressions submitting each to Pred1 -% -with_lisp_translation(In,Pred1):- - is_stream(In),!,with_lisp_translation_stream(In,Pred1). -with_lisp_translation(Other,Pred1):- - setup_call_cleanup(l_open_input(Other,In), - with_lisp_translation_stream(In,Pred1), - ignore(notrace_catch_fail(close(In)))),!. - -with_lisp_translation_stream(In,Pred1):- - repeat, - once((lisp_read(In,O))), - (O== end_of_file - -> (with_all_rest_info(Pred1),!) ; - (((once((zalwayzz(call_proc(Pred1,O))))),fail))). - -call_proc(Pred1,O):- call(Pred1,O),!,with_all_rest_info(Pred1),!. - -with_all_rest_info(Pred1):- - forall(clause(t_l:s_reader_info(O2),_,Ref), - (zalwayzz(once(call(Pred1,O2))),erase(Ref))),!. - -parse_sexpr_untyped(I,O):- quietly_sreader((parse_sexpr(I,M))), - quietly_sreader((to_untyped(M,O))). - -read_pending_whitespace(In):- repeat, peek_char(In,Code), - (( \+ char_type(Code,space), \+ char_type(Code,white))-> ! ; (get_char(In,_),fail)). - - -make_tmpfile_name(Name,Temp):- - atomic_list_concat(List1,'/',Name),atomic_list_concat(List1,'_',Temp1), - atomic_list_concat(List2,'.',Temp1),atomic_list_concat(List2,'_',Temp2), - atomic_list_concat(List3,'\\',Temp2),atomic_list_concat(List3,'_',Temp3), - atom_concat_or_rtrace(Temp3,'.tmp',Temp),!. - - - - -:- meta_predicate(with_lisp_translation_cached(:,2,1)). -:- meta_predicate(maybe_cache_lisp_translation(+,+,2)). - -with_lisp_translation_cached(M:LFile,WithPart2,WithPart1):- - absolute_file_name(LFile,File), - make_tmpfile_name(LFile,Temp), - maybe_cache_lisp_translation(File,Temp,WithPart2),!, - finish_lisp_translation_cached(M,File,Temp,WithPart1). - -finish_lisp_translation_cached(M,File,Temp,WithPart1):- - multifile(M:lisp_trans/2), - dynamic(M:lisp_trans/2), - file_base_name(File,BaseName), - M:load_files([Temp],[qcompile(auto)]), - forall(M:lisp_trans(Part2,BaseName:Line), - once((b_setval('$lisp_translation_line',Line), - zalwayzz(M:call(WithPart1,Part2))))). - -maybe_cache_lisp_translation(File,Temp,_):- \+ file_needs_rebuilt(Temp,File),!. -maybe_cache_lisp_translation(File,Temp,WithPart2):- - file_base_name(File,BaseName), - setup_call_cleanup(open(Temp,write,Outs,[encoding(utf8)]), - must_det((format(Outs,'~N~q.~n',[:- multifile(lisp_trans/2)]), - format(Outs,'~N~q.~n',[:- dynamic(lisp_trans/2)]), - format(Outs,'~N~q.~n',[:- style_check(-singleton)]), - format(Outs,'~N~q.~n',[lisp_trans(translated(File,Temp,BaseName),BaseName:( -1))]), - with_lisp_translation(File,write_trans(Outs,BaseName,WithPart2)), - format(Outs,'~N~q.~n',[end_of_file]))), - ((ignore(notrace_catch_fail(flush_output(Outs),_,true)),ignore(notrace_catch_fail(close(Outs),_,true))))),!. - - -write_trans(Outs,File,WithPart2,Lisp):- - zalwayzz((call(WithPart2,Lisp,Part), - nb_current('$lisp_translation_line',Line), - format(Outs,'~N~q.~n',[lisp_trans(Part,File:Line)]))),!. - -/* alternate method*/ -phrase_from_stream_partial(Grammar, In):- - phrase_from_stream((Grammar,!,lazy_forgotten(In)), In). - -lazy_forgotten(In,UnUsed,UnUsed):- - (is_list(UnUsed)-> true ; append(UnUsed,[],UnUsed)), - length(UnUsed,PlzUnread), - seek(In, -PlzUnread, current, _). - - -% :- use_module(library(yall)). -% :- rtrace. -% tstl(I):- with_lisp_translation(I,([O]>>(writeq(O),nl))). -tstl(I):- with_kifvars(with_lisp_translation(I,writeqnl)). - -with_kifvars(Goal):- - locally(t_l:sreader_options(logicmoo_read_kif,true),Goal). - - - -%:- thread_local(t_l:fake_buffer_codes/2). - - -%% parse_sexpr( :TermS, -Expr) is det. -% -% Parse S-expression. -% - -parse_sexpr(S, Expr) :- quietly_sreader(parse_meta_term( - file_sexpr_with_comments, S, Expr)). - -%% parse_sexpr_ascii( +Codes, -Expr) is det. -% -% Parse S-expression Codes. -% -parse_sexpr_ascii(S, Expr) :- quietly_sreader(parse_meta_ascii(file_sexpr_with_comments, S,Expr)),!. - - -parse_sexpr_ascii_as_list(Text, Expr) :- txt_to_codes(Text,DCodes), - clean_fromt_ws(DCodes,Codes),!,append([`(`,Codes,`)`],NCodes),!, - phrase(sexpr_rest(Expr), NCodes, []). - - -%% parse_sexpr_string( +Codes, -Expr) is det. -% -% Parse S-expression That maybe sees string from Codes. -% -parse_sexpr_string(S,Expr):- - locally_setval('$maybe_string',t,parse_sexpr(string(S), Expr)),!. - -%% parse_sexpr_stream( +Stream, -Expr) is det. -% -% Parse S-expression from a Stream -% -parse_sexpr_stream(S,Expr):- quietly_sreader(parse_meta_stream(file_sexpr_with_comments,S,Expr)),!. - -:- export('//'(file_sexpr,1)). -:- export('//'(sexpr,1)). - -% for offline use of this lisp reader -intern_and_eval(UTC,V):- current_predicate(lisp_compiled_eval/2),!, - call(call,(reader_intern_symbols(UTC,M),!,lisp_compiled_eval(M,V))). -intern_and_eval(UTC,'$intern_and_eval'(UTC)). - -% Use DCG for parser. - - -%file_sexpr_with_comments(O) --> [], {clause(t_l:s_reader_info(O),_,Ref),erase(Ref)},!. -file_sexpr_with_comments(end_of_file) --> file_eof,!. -file_sexpr_with_comments('+') --> `+`, swhite,!. - -file_sexpr_with_comments(O) --> one_blank,!,file_sexpr_with_comments(O),!. % WANT? -file_sexpr_with_comments(end_of_file) --> `:EOF`,!. -file_sexpr_with_comments(C) --> dcg_peek(`#|`),!,zalwayzz(comment_expr(C)),swhite,!. -file_sexpr_with_comments(C) --> dcg_peek(`;`),!, zalwayzz(comment_expr(C)),swhite,!. -file_sexpr_with_comments(Out) --> {kif_ok}, prolog_expr_next, prolog_readable_term(Out), !. -file_sexpr_with_comments(Out,S,E):- \+ t_l:sreader_options(with_text,true),!,phrase(file_sexpr(Out),S,E),!. -file_sexpr_with_comments(Out,S,E):- expr_with_text(Out,file_sexpr(O),O,S,E),!. - -prolog_expr_next--> dcg_peek(`:-`). -prolog_expr_next--> dcg_peek(read_string_until(S,(eol;`.`))),{atom_contains(S,':-')}. -prolog_expr_next--> dcg_peek(`.{`). - -prolog_readable_term(Expr) --> `.`,prolog_readable_term(Read), {arg(1,Read,Expr),!}. -prolog_readable_term(Expr,S,E):- - notrace(catch((read_term_from_codes(S,Expr,[subterm_positions(FromTo),cycles(true), module( baseKB), - double_quotes(string), - comments(CMT), variable_names(Vars)]),implode_threse_vars(Vars), - arg(2,FromTo,To), length(TermCodes,To), - append(TermCodes,Remaining,S), - `.`=[Dot],(Remaining=[Dot|E]/*;Remaining=E*/),!, - must(record_plterm_comments(CMT))),_,fail)). -record_plterm_comments(L):- is_list(L),!,maplist(record_plterm_comments,L). -record_plterm_comments(_-CMT):- assert(t_l:s_reader_info(CMT)). - - -% in Cyc there was a fitness heuristic that every time an logical axiom had a generated a unique consequent it was considered to have utility as it would expand the breadth of a search .. the problem often was those consequents would feed a another axiom's antecedant where that -:- asserta((system:'$and'(X,Y):- (X,Y))). - -%expr_with_text(Out,DCG,O,S,E):- -% call(DCG,S,E) -> append(S,Some,E) -> get_sexpr_with_comments(O,Some,Out,S,E),!. - -get_sexpr_with_comments(O,_,O,_,_):- compound(O),functor(O,'$COMMENT',_),!. -get_sexpr_with_comments(O,Txt,with_text(O,Str),S,_E):-append(Txt,_,S),!,text_to_string(Txt,Str). -%file_sexpr_with_comments(O,with_text(O,Txt),S,E):- copy_until_tail(S,Copy),text_to_string_safe(Copy,Txt),!. - - -file_sexpr(end_of_file) --> file_eof,!. -% WANT? -file_sexpr(O) --> sblank,!,file_sexpr(O),!. -% file_sexpr(planStepLPG(Name,Expr,Value)) --> swhite,sym_or_num(Name),`:`,swhite, sexpr(Expr),swhite, `[`,sym_or_num(Value),`]`,swhite. % 0.0003: (PICK-UP ANDY IBM-R30 CS-LOUNGE) [0.1000] -% file_sexpr(Term,Left,Right):- eoln(EOL),append(LLeft,[46,EOL|Right],Left),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. -% file_sexpr(Term,Left,Right):- append(LLeft,[46|Right],Left), ( \+ member(46,Right)),read_term_from_codes(LLeft,Term,[double_quotes(string),syntax_errors(fail)]),!. -file_sexpr(Expr) --> sexpr(Expr),!. -% file_sexpr(Expr,H,T):- lisp_dump_break,rtrace(phrase(file_sexpr(Expr), H,T)). -/* -file_sexpr(Expr) --> {fail}, - sexpr_lazy_list_character_count(Location,Stream), - {break, - seek(Stream,Location,bof,_), - read_clause(Stream,Expr,[cycles(true),double_quotes(string),variable_names(Vars)]), - implode_threse_vars(Vars)},!. - -file_sexpr(Expr) --> sexpr(Expr),!. - -file_sexpr(end_of_file) --> []. -*/ -% file_sexpr('$ERROR'(S_EOF)) --> read_until_eof_e(Unitl_EOF),!,{sformat(S_EOF,'~s',[Unitl_EOF])}. -% read_until_eof_e(Unitl_EOF,S,E):- append(S,E,Unitl_EOF),break,is_list(Unitl_EOF),!. - -%read_dispatch(E,[Disp,Char|In],Out):- read_dispatch_char([Disp,Char],E,In,Out). -read_dispatch(E,[DispatCH|In],Out):- read_dispatch_char([DispatCH],E,In,Out). - -read_dispatch_char(DispatCH,Form,In,Out):- sread_dyn:plugin_read_dispatch_char(DispatCH,Form,In,Out),!. -% read_dispatch_char(`@`,Form,In,Out):- phrase(sexpr(Form), In, Out),!. - -read_dispatch_error(Form,In,Out):- trace, dumpST,trace_or_throw((read_dispatch_error(Form,In,Out))). - - - - -:- multifile(sread_dyn:plugin_read_dispatch_char/4). -:- dynamic(sread_dyn:plugin_read_dispatch_char/4). - -:- use_module(library(dcg/basics)). - -% #x Hex -sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- - member(DispatCH,`Xx`),(phrase((`-`,dcg_basics:xinteger(FormP)), In, Out)),!,Form is -FormP. - -sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- - member(DispatCH,`Xx`),!,zalwayzz(phrase(dcg_basics:xinteger(Form), In, Out)),!. - -% #B Binary -sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- - member(DispatCH,`Bb`),!,phrase(signed_radix_2(2,Form), In, Out),!. - -% #O Octal -sread_dyn:plugin_read_dispatch_char([DispatCH],Form,In,Out):- - member(DispatCH,`Oo`),!,phrase(signed_radix_2(8,Form), In, Out),!. - -signed_radix_2(W,V)--> signed_radix_2_noext(W,Number),extend_radix(W,Number,V). - -signed_radix_2_noext(W,Number) --> `-`,!,unsigned_radix_2(W,NumberP),{Number is - NumberP },!. -signed_radix_2_noext(W,Number) --> `+`,!,unsigned_radix_2(W,Number). -signed_radix_2_noext(W,Number) --> unsigned_radix_2(W,Number). - -unsigned_radix_2(W,Number) --> radix_digits(W,Xs),!,{mkvar_w(Xs,W,Number)},!. - - -radix(Radix)-->`#`,integer(Radix),ci(`r`). -radix(16)-->`#`,ci(`X`). -radix(8)-->`#`,ci(`O`). -radix(2)-->`#`,ci(`B`). - -signed_radix_number(V)--> radix(Radix),!,signed_radix_2(Radix,V). -unsigned_radix_number(V)--> radix(Radix),!,unsigned_radix_2(Radix,V). - -extend_radix(Radix,Number0,'$RATIO'(Number0,Number1)) --> `/`,unsigned_radix_2(Radix,Number1). -%extend_radix(Radix,Number0,'/'(NumberB,Number1)) --> `.`,radix_number(Radix,Number1),{NumberB is (Number0*Number1)+1},!. -%extend_radix(Radix,Number0,'/'(NumberB,NumberR)) --> `.`,radix_number(Radix,Number1),{NumberR is Number1 * Radix, NumberB is (Number0*Number1)+1},!. -extend_radix(_Radix,Number,Number) --> []. - -radix_digits(OF,[X|Xs]) --> xdigit(X),{X alpha_to_lower(C),{X is C - 87,X []. - - - -mkvar_w([W0|Weights], Base, Val) :- - mkvar_w(Weights, Base, W0, Val). - -mkvar_w([], _, W, W). -mkvar_w([H|T], Base, W0, W) :- - W1 is W0*Base+(H), - mkvar_w(T, Base, W1, W). - - -ci([])--> !, []. -ci([U|Xs]) --> {to_lower(U,X)},!,alpha_to_lower(X),ci(Xs). - - -remove_optional_char(S)--> S,!. -remove_optional_char(_)-->[]. - -implode_threse_vars([N='$VAR'(N)|Vars]):-!, implode_threse_vars(Vars). -implode_threse_vars([]). - -ugly_sexpr_cont('$OBJ'([S|V])) --> rsymbol_maybe(``,S), sexpr_vector(V,`>`),swhite,!. -ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. -ugly_sexpr_cont('$OBJ'(V)) --> sexpr_vector(V,`>`),swhite,!. -ugly_sexpr_cont('$OBJ'(V)) --> read_string_until_pairs(VS,`>`), swhite,{parse_sexpr_ascii_as_list(VS,V)},!. -ugly_sexpr_cont('$OBJ'(sugly,S)) --> read_string_until(S,`>`), swhite,!. - -%% sexpr(L)// is det. -% - -%sexpr(L) --> sblank,!,sexpr(L),!. -%sexpr(_) --> `)`,!,{trace,break,throw_reader_error(": an object cannot start with #\\)")}. -sexpr(X,H,T):- zalwayzz(sexpr0(X),H,M),zalwayzz(swhite,M,T), nop(if_debugging(sreader,(fbug(sexpr(X))))),!. -%sexpr(X,H,T):- zalwayzz(sexpr0(X,H,T)),!,swhite. -is_common_lisp:- fail. - -sexpr0(L) --> sblank,!,sexpr(L),!. -sexpr0(L) --> `(`, !, swhite, zalwayzz(sexpr_list(L)),!, swhite. -sexpr0((Expr)) --> `.{`, read_string_until(S,`}.`), swhite, - {prolog_readable_term(Expr,S,_)}. - - -sexpr0(['#'(quote),E]) --> `'`, !, sexpr(E). -sexpr0(['#'(hbackquote),E]) --> {is_scm}, `#```, !, sexpr(E). -sexpr0(['#'(backquote),E]) --> ````, !, sexpr(E). -sexpr0(['#BQ-COMMA-ELIPSE',E]) --> `,@`, !, sexpr(E). -sexpr0(['#COMMA',E]) --> { is_common_lisp }, `,`, !, sexpr(E). -sexpr0(['#HCOMMA',E]) --> {is_scm}, `#,`, !, sexpr(E). -sexpr0('$OBJ'(claz_bracket_vector,V)) --> `[`, sexpr_vector(V,`]`),!, swhite. - -% MeTTA/NARS % sexpr0('#'(A)) --> `|`, !, read_string_until(S,`|`), swhite,{quietly_sreader(((atom_string(A,S))))}. - -% maybe this is KIF -sexpr0('?'(E)) --> {kif_ok}, `?`, dcg_peek(([C],{sym_char(C)})),!, rsymbol(``,E), swhite. -% @TODO if KIF sexpr('#'(E)) --> `&%`, !, rsymbol(`#$`,E), swhite. - -sexpr0('$STRING'(S)) --> s_string(S),!. - -/******** BEGIN HASH ************/ - -sexpr0('#') --> `#`, swhite,!. -sexpr0('#\\'(35)) --> `#\\#`,!, swhite. -sexpr0(E) --> `#`,read_dispatch(E),!. - - -%sexpr('#\\'(C)) --> `#\\`,ci(`u`),!,remove_optional_char(`+`),dcg_basics:xinteger(C),!. -%sexpr('#\\'(C)) --> `#\\`,dcg_basics:digit(S0), swhite,!,{atom_codes(C,[S0])}. -sexpr0('#\\'(32)) --> `#\\ `,!. -sexpr0('#\\'(C)) --> `#\\`,!,zalwayzz(rsymbol(``,C)), swhite. - -%sexpr(['#-',K,Out]) --> `#-`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. -%sexpr(['#+',K,Out]) --> `#+`,!,sexpr(C),swhite,expr_with_text(Out,sexpr(O),O),!,{as_keyword(C,K)}. - -sexpr0(['#-',K,O]) --> `#-`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. -sexpr0(['#+',K,O]) --> `#+`,!,sexpr(C),swhite,sexpr(O),!,{as_keyword(C,K)},!. - -:- if(is_wam_cl). - sexpr0(P) --> `#`,ci(`p`),!,zalwayzz((sexpr(C),{f_pathname(C,P)})),!. -:- endif. -sexpr0('$S'(C)) --> (`#`, ci(`s`),`(`),!,zalwayzz(sexpr_list(C)),swhite,!. -%sexpr('$COMPLEX'(R,I)) --> `#`,ci(`c`),`(`,!, lnumber(R),lnumber(I),`)`. -sexpr0('$COMPLEX'(R,I)) --> (`#`, ci(`c`),`(`),!,zalwayzz(sexpr_list([R,I])),swhite,!. -sexpr0('$OBJ'(claz_bitvector,C)) --> `#*`,radix_digits(2,C),swhite,!. - -sexpr0(function(E)) --> `#\'`, sexpr(E), !. %, swhite. -sexpr0('$OBJ'(claz_vector,V)) --> `#(`, !, zalwayzz(sexpr_vector(V,`)`)),!, swhite,!. - -sexpr0(Number) --> `#`,integer(Radix),ci(`r`),!,zalwayzz((signed_radix_2(Radix,Number0),extend_radix(Radix,Number0,Number))),!. -sexpr0('$ARRAY'(Dims,V)) --> `#`,integer(Dims),ci(`a`),!,sexpr(V). -sexpr0(V) --> `#.`, !,sexpr(C),{to_untyped(C,UTC),!,intern_and_eval(UTC,V)},!. -sexpr0('#'(E)) --> `#:`, !,zalwayzz(rsymbol(`#:`,E)), swhite. - -sexpr0(OBJ)--> `#<`,!,zalwayzz(ugly_sexpr_cont(OBJ)),!. - -% @TODO if CYC sexpr('#'(E)) --> `#$`, !, rsymbol(`#$`,E), swhite. -% @TODO if scheme sexpr('#'(t)) --> `#t`, !, swhite. -% @TODO if schemesexpr('#'(f)) --> `#f`, !, swhite. - -% sexpr(E) --> `#`,read_dispatch_error(E). - -/*********END HASH ***********/ - -sexpr0(E) --> sym_or_num(E), swhite,!. -sexpr0(Sym) --> `#`,integer(N123), swhite,!, {atom_concat('#',N123,Sym)}. -sexpr0(C) --> s_line_metta(C) ,swhite, !. %s_line_metta(C), !. -sexpr0(C) --> s_item_metta(C, e_o_s), swhite. %s_line_metta(C), !. -sexpr0(E) --> !,zalwayzz(sym_or_num(E)), swhite,!. - -is_scm:- fail. - -% c:/opt/logicmoo_workspace/packs_sys/logicmoo_opencog/guile/module/ice-9/and-let-star.scm - -priority_symbol((`|-`)). -/* -priority_symbol((`#=`)). -priority_symbol((`#+`)). -priority_symbol((`#-`)). -priority_symbol((`#false`)). -priority_symbol((`#true`)). -priority_symbol((`#nil`)). -priority_symbol((`#null`)). -priority_symbol((`#f`)). -priority_symbol((`#;`)):- is_scm. -priority_symbol((`#t`)). -priority_symbol((`+1+`)). -priority_symbol((`+1-`)). -priority_symbol((`-#+`)). -priority_symbol((`-1+`)). -priority_symbol((`-1-`)). -priority_symbol((`1+`)). -priority_symbol((`1-`)). -*/ - -sym_or_num('$COMPLEX'(L)) --> `#C(`,!, swhite, sexpr_list(L), swhite. -%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. -%sym_or_num((E)) --> unsigned_number(S),{number_string(E,S)}. - -%sym_or_num((E)) --> lnumber(E),swhite,!. -sym_or_num(E) --> rsymbol_maybe(``,E),!. -%sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. - -sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. -%sym_or_num(E) --> dcg_xor(rsymbol(``,E),lnumber(E)),!. -% sym_or_num('#'(E)) --> [C],{atom_codes(E,[C])}. - - -dcg_xor(DCG1,DCG2,S,E):- copy_term(DCG1,DCG1C),phrase(DCG1C,S,E),!, - (phrase(DCG2,S,[])->true;zalwayzz(DCG1C=DCG1)),!. -dcg_xor(_,DCG2,S,E):- phrase(DCG2,S,E),!. -%sblank --> [C], {var(C)},!. - -% sblank --> comment_expr(S,I,CP),!,{assert(t_l:s_reader_info('$COMMENT'(S,I,CP)))},!,swhite. -sblank --> comment_expr(CMT),!,{assert(t_l:s_reader_info(CMT))},!,swhite. -sblank --> [C], {nonvar(C),charvar(C),!,bx(C =< 32)},!,swhite. - -sblank_line --> eoln,!. -sblank_line --> [C],{bx(C =< 32)},!, sblank_line. - -s_string(Text) --> sexpr_string(Text). -s_string(Text) --> {kif_ok},`'`, !, zalwayzz(read_string_until(Text,`'`)),!. - - - -swhite --> sblank,!. -swhite --> []. - - -sexpr_lazy_list_character_count(Location, Stream, Here, Here) :- - sexpr_lazy_list_character_count(Here, Location, Stream). - -sexpr_lazy_list_character_count(Here, CharNo, Stream) :- - '$skip_list'(Skipped, Here, Tail), - ( attvar(Tail) - -> frozen(Tail, - pure_input:read_to_input_stream(Stream, _PrevPos, Pos, _List)), - stream_position_data(char_count, Pos, EndRecordCharNo), - CharNo is EndRecordCharNo - Skipped - ; Tail == [] - -> CharNo = end_of_file-Skipped - ; type_error(lazy_list, Here) - ). - - - -comment_expr('$COMMENT'(Expr,I,CP)) --> comment_expr_3(Expr,I,CP),!. - -comment_expr_3(T,N,CharPOS) --> {\+ kif_ok}, `#|`, !, my_lazy_list_location(file(_,_,N,CharPOS)),!, zalwayzz(read_string_until_no_esc(S,`|#`)),!, - {text_to_string_safe(S,T)},!. -comment_expr_3(T,N,CharPOS) --> `;`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, - {text_to_string_safe(S,T)},!. -comment_expr_3(T,N,CharPOS) --> {kif_ok}, `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,eoln)),!, - {text_to_string_safe(S,T)},!. -% For Scheme -comment_expr_3(T,N,CharPOS) --> `#!`,!, my_lazy_list_location(file(_,_,N,CharPOS)),!,zalwayzz(read_string_until_no_esc(S,`!#`)),!, - {text_to_string_safe(S,T)},!. - - -sexprs([H|T]) --> sexpr(H), !, sexprs(T). -sexprs([]) --> []. - - -:- export('//'(sexpr_list,1)). - - -peek_symbol_breaker_or_number --> dcg_peek([C]),{\+ sym_char(C),\+ char_type(C,digit)}. -peek_symbol_breaker --> dcg_peek([C]),{\+ sym_char(C)}. -peek_symbol_breaker --> one_blank. - -sexpr_list(X) --> one_blank,!,sexpr_list(X). -sexpr_list([]) --> `)`, !. -%sexpr_list(_) --> `.`, [C], {\+ sym_char(C)}, {fail}. -sexpr_list([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. - -sexpr_rest([]) --> `)`, !. -% allow dotcons/improper lists.. but also allow dot in the middle of the list (non-CL) -sexpr_rest(E) --> `.`, [C], {\+ sym_char(C)}, sexpr(E,C), `)` , ! . -sexpr_rest(E) --> {kif_ok}, `@`, rsymbol(`?`,E), `)`. -sexpr_rest([Car|Cdr]) --> sexpr(Car), !, sexpr_rest(Cdr),!. - -sexpr_vector(O,End) --> zalwayzz(sexpr_vector0(IO,End)),!,{zalwayzz(O=IO)}. - -sexpr_vector0(X) --> one_blank,!,sexpr_vector0(X). -sexpr_vector0([],End) --> End, !. -sexpr_vector0([First|Rest],End) --> sexpr(First), !, sexpr_vector0(Rest,End). - -%s_string_cont(Until,"") --> Until,!, swhite. -:- encoding(iso_latin_1). -sexpr_string(Text) --> `"`, !, zalwayzz(read_string_until(Text,`"`)),!. -sexpr_string(Text) --> `“`, !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. -sexpr_string(Text) --> (`”`;`“`), !, zalwayzz(read_string_until(Text,(`”`;`“`))),!. -sexpr_string(Text) --> `#|`, !, zalwayzz(read_string_until(Text,`|#`)),!. -:- encoding(utf8). -%sexpr_string([C|S],End) --> `\\`,!, zalwayzz(escaped_char(C)),!, sexpr_string(S,End). -%sexpr_string([],End) --> End, !. -% sexpr_string([32|S]) --> [C],{eoln(C)}, sexpr_string(S). -%sexpr_string([C|S],End) --> [C],!,sexpr_string(S,End). - -rsymbol_chars([C1,C2|Rest]) --> [C1,C2], {priority_symbol([C1,C2|Rest])},Rest,!. -rsymbol_chars([C|S])--> [C], {sym_char(C)},!, sym_continue(S),!. -%rsymbol_cont(Prepend,E) --> sym_continue(S), {append(Prepend,S,AChars),string_to_atom(AChars,E)},!. - -rsymbol(Chars,E) --> rsymbol_chars(List), {append(Chars,List,AChars),string_to_atom(AChars,E)},!. - -rsymbol_maybe(Prepend,ES) --> rsymbol(Prepend,E),{maybe_string(E,ES)},!. - -maybe_string(E,ES):- nb_current('$maybe_string',t),!,text_to_string_safe(E,ES),!. -maybe_string(E,E). - -sym_continue([H|T]) --> [H], {sym_char(H)},!, sym_continue(T). -sym_continue([39]) --> `'`, peek_symbol_breaker,!. -sym_continue([]) --> peek_symbol_breaker,!. -sym_continue([]) --> []. - -string_vector([First|Rest]) --> sexpr(First), !, string_vector(Rest),!. -string_vector([]) --> [], !. - -% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - -lnumber(_)--> [C],{code_type(C,alpha)},!,{fail}. -lnumber(N)--> lnumber0(N),!. % (peek_symbol_breaker;[]). - -oneof_ci(OneOf,[C])--> {member(C,OneOf)},ci([C]). -dcg_and2(DCG1,DCG2,S,E) :- dcg_phrase(DCG1,S,E),!,dcg_phrase(DCG2,S,E),!. -dcg_each_call_cleanup(Setup,DCG,Cleanup,S,E) :- each_call_cleanup(Setup,dcg_phrase(DCG,S,E),Cleanup). -dcg_phrase(\+ DCG1,S,E):- !, \+ phrase(DCG1,S,E). -dcg_phrase(DCG1,S,E):- phrase(DCG1,S,E),!. - -dcg_not(DCG1,S,E) :- \+ dcg_phrase(DCG1,S,E). - -enumber(N)--> lnumber(L),!,{to_untyped(L,N)},!. - -/* -Format Minimum Precision Minimum Exponent Size -Short 13 bits 5 bits -Single 24 bits 8 bits -Double 50 bits 8 bits -Long 50 bits 8 bits -*/ - -float_e_type(`E`,claz_single_float). -float_e_type(`f`,claz_single_float). -float_e_type(`d`,claz_double_float). -float_e_type(`L`,claz_long_float). -float_e_type(`s`,claz_short_float). - -lnumber_exp('$EXP'(N,T,E))-->snumber_no_exp(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),{exp:float_e_type(TC,T)},!. -lnumber_exp('$EXP'(N,T,E))-->dcg_basics:integer(N),!,oneof_ci(`EsfdL`,TC),dcg_basics:integer(E),!,{float_e_type(TC,T)},!. - - -lnumber0(N) --> lnumber_exp(N),!. -lnumber0('$RATIO'(N,D)) --> sint(N),`/`,uint(D),!. -lnumber0(N) --> snumber_no_exp(N),!. -%lnumber0(N) --> dcg_basics:number(N),!. - - -snumber_no_exp(N)--> `-`,!,unumber_no_exp(S),{N is -S},!. -snumber_no_exp(N)--> `+`,!,unumber_no_exp(N),!. -snumber_no_exp(N)--> unumber_no_exp(N),!. -%snumber_no_exp(N)--> sint(N),!. - - -sint(N) --> signed_radix_number(N),!. -sint(N)--> `-`,!,uint(S),{N is -S},!. -sint(N)--> `+`,!,uint(N),!. -sint(N)--> uint(N),!. - -natural_int(_) --> dcg_not(dcg_basics:digit(_)),!,{fail}. -natural_int(N) --> dcg_basics:integer(N),!. - -digits_dot_digits --> natural_int(_),!,`.`,!,natural_int(_),!. - -unumber_no_exp(N) --> dcg_and2(digits_dot_digits,dcg_basics:float(N)),!. -unumber_no_exp(N) --> `.`,!,dcg_basics:digit(S0),!,dcg_basics:digits(S),{(notrace_catch_fail(number_codes(N,[48,46,S0|S])))},!. -unumber_no_exp(N)--> natural_int(E),`.`,natural_int(S),{(notrace_catch_fail(number_codes(ND,[48,46|S]))),N is ND + E},!. -unumber_no_exp(N) --> natural_int(N),!,remove_optional_char(`.`),!. - -uint(N) --> unsigned_radix_number(N),!. -uint(N) --> natural_int(N),!,remove_optional_char(`.`),!. - - -% . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - -%= - -%% sexpr( ?E, ?C, ?X, ?Z) is det. -% -% S-Expression. -% -sexpr(E,C,X,Z) :- swhite([C|X],Y), sexpr(E,Y,Z),!. - -% dquote semicolon parens hash qquote comma backquote - -%= - -%% sym_char( ?C) is det. -% -% Sym Char. (not ";()#',` -% ) -% - -sym_char(C):- bx(C =< 32),!,fail. -%sym_char(44). % allow comma in middle of symbol -sym_char(C):- memberchk(C,`"()```),!,fail. % maybe 44 ? comma maybe not # or ; ? ' -%sym_char(C):- nb_current('$maybe_string',t),memberchk(C,`,.:;!%`),!,fail. -sym_char(_):- !. - -sym_char_start(C):- C\==44,C\==59,sym_char(C). - - - -:- thread_initialization(nb_setval('$maybe_string',[])). - -:- thread_local(t_l:s2p/1). -:- thread_local(t_l:each_file_term/1). - - - -%= - -%% to_unbackquote( ?I, ?O) is det. -% -% Converted To Unbackquote. -% -to_unbackquote(I,O):-to_untyped(I,O),!. - -:- export(to_untyped/2). - - -%atom_or_string(X):- (atom(X);string(X)),!. -as_keyword(C,K):- atom(C),!,(atom_concat_or_rtrace(':',_,C)->K=C;atom_concat_or_rtrace(':',C,K)),!. -as_keyword(C,C):- \+compound(C),!. -as_keyword([A|B],[AK|BK]):- !, as_keyword(A,AK),as_keyword(B,BK),!. -as_keyword(C,C). - - -%% to_untyped( :TermVar, :TermName) is det. -% -% Converted To Untyped. -% -to_untyped(S,S):- var(S),!. -to_untyped(S,S):- is_dict(S),!. -to_untyped([],[]):-!. -to_untyped('#-'(C,I),'#-'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. -to_untyped('#+'(C,I),'#+'(K,O)):- as_keyword(C,K),!,to_untyped(I,O),!. -to_untyped('?'(S),_):- S=='??',!. -% to_untyped('?'(S),'$VAR'('_')):- S=='??',!. -% to_untyped(VAR,NameU):-atom(VAR),atom_concat_or_rtrace('#$',NameU,VAR),!. -to_untyped(VAR,NameU):-atom(VAR),(atom_concat_or_rtrace(N,'.',VAR)->true;N=VAR),(notrace_catch_fail(atom_number(N,NameU))),!. -%to_untyped(S,s(L)):- string(S),atom_contains(S,' '),atomic_list_concat(['(',S,')'],O),parse_sexpr_string(O,L),!. -to_untyped(S,S):- string(S),!. -to_untyped(S,S):- number(S),!. -%to_untyped(S,O):- atom(S),notrace_catch_fail(atom_number(S,O)),!. -to_untyped(Var,'$VAR'(Name)):-svar(Var,Name),!. -to_untyped('?'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. -to_untyped(Atom,Atom):- \+ compound(Atom),!. -to_untyped('@'(Var),'$VAR'(Name)):-svar_fixvarname(Var,Name),!. -to_untyped('#'(S),O):- !, (nonvar(S)->to_untyped(S,O) ; O='#'(S)). -to_untyped('$CHAR'(S),C):-!,to_untyped('#\\'(S),C),!. -to_untyped('#\\'(S),C):-to_char(S,C),!. -to_untyped('#\\'(S),'#\\'(S)):-!. -to_untyped('$OBJ'([FUN, F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). -to_untyped('$OBJ'([FUN| F]),O):- atom(FUN),!,to_untyped('$OBJ'(FUN, F),O). -to_untyped('$OBJ'(S),'$OBJ'(O)):-to_untyped(S,O),!. -to_untyped('$OBJ'(Ungly,S),'$OBJ'(Type,O)):- text_to_string_safe(Ungly,Str),string_to_atom(Str,Type),to_untyped(S,O),!. -to_untyped('$OBJ'(Ungly,S),'$OBJ'(Ungly,O)):-to_untyped(S,O),!. -to_untyped('$OBJ'(Ungly,S),O):-to_untyped(S,SO),!,O=..[Ungly,SO]. -to_untyped('$COMPLEX'(N0,D0),N):- to_untyped(D0,D), notrace_catch_fail(( 0 =:= D)),to_untyped(N0,N). -to_untyped('$RATIO'(N0,D0),V):- to_untyped(N0,N),to_untyped(D0,D), notrace_catch_fail(( 0 is N mod D, V is N div D)). -to_untyped('$NUMBER'(S),O):-nonvar(S),to_number(S,O),to_untyped(S,O),!. -to_untyped('$NUMBER'(S),'$NUMBER'(claz_short_float,S)):- float(S),!. -to_untyped('$NUMBER'(S),'$NUMBER'(claz_bignum,S)). -to_untyped('$EXP'(I,'E',E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. -to_untyped('$EXP'(I,claz_single_float,E),N):- (notrace_catch_fail(N is 0.0 + ((I * 10^E)))),!. -to_untyped('$EXP'(I,T,E),'$NUMBER'(T,N)):- (notrace_catch_fail(N is (I * 10^E))),!. -to_untyped('$EXP'(I,T,E),'$EXP'(I,T,E)):-!. - -to_untyped(with_text(I,_Txt),O):-to_untyped(I,O),!. -to_untyped(with_text(I,Txt),with_text(O,Txt)):-to_untyped(I,O),!. - -% to_untyped([[]],[]):-!. -to_untyped('$STR'(Expr),Forms):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. -to_untyped('$STRING'(Expr),'$STRING'(Forms)):- (text_to_string_safe(Expr,Forms);to_untyped(Expr,Forms)),!. -to_untyped(['#'(Backquote),Rest],Out):- is_common_lisp, Backquote == backquote, !,to_untyped(['#'('#BQ'),Rest],Out). -to_untyped(['#'(S)|Rest],OOut):- nonvar(S), is_list(Rest),must_maplist(to_untyped,[S|Rest],[F|Mid]), - ((atom(F),t_l:s2p(F))-> Out=..[F|Mid];Out=[F|Mid]), - to_untyped(Out,OOut). -to_untyped(ExprI,ExprO):- ExprI=..[F|Expr],atom_concat_or_rtrace('$',_,F),!,must_maplist(to_untyped,Expr,TT),ExprO=..[F|TT]. - -% to_untyped([H|T],Forms):-is_list([H|T]),zalwayzz(text_to_string_safe([H|T],Forms);maplist(to_untyped,[H|T],Forms)). -to_untyped([H|T],[HH|TT]):-!,zalwayzz((to_untyped(H,HH),!,to_untyped(T,TT))). -to_untyped(ExprI,ExprO):- zalwayzz(ExprI=..Expr), - must_maplist(to_untyped,Expr,[HH|TT]),(atom(HH)-> ExprO=..[HH|TT] ; ExprO=[HH|TT]),!. -% to_untyped(Expr,Forms):-def_compile_all(Expr,Forms),!. - -to_number(S,S):-number(S),!. -to_number(S,N):- text_to_string_safe(S,Str),number_string(N,Str),!. - - -to_char(S,'#\\'(S)):- var(S),!. -to_char('#'(S),C):- !, to_char(S,C). -to_char('#\\'(S),C):- !, to_char(S,C). -to_char(S,C):- atom(S),atom_concat('^',SS,S),upcase_atom(SS,SU),atom_codes(SU,[N64]),N is N64-64,N>=0,!,to_char(N,C). -to_char(S,C):- atom(S),atom_codes(S,[N]),!,to_char(N,C). -to_char(N,C):- text_to_string_safe(N,Str),name_to_charcode(Str,Code),to_char(Code,C),!. -%to_char(N,'#\\'(S)):- to_number(N,NC),!,char_code_to_char(NC,S),!. -to_char(N,'#\\'(S)):- integer(N),!,char_code_to_char(N,S),!. -to_char(N,'#\\'(N)). - -char_code_int(Char,Code):- notrace_catch_fail(char_code(Char,Code)),!. -char_code_int(Char,Code):- notrace_catch_fail(atom_codes(Char,[Code])),!. -char_code_int(Char,Code):- atom(Char),name_to_charcode(Char,Code),!. -char_code_int(Char,Code):- var(Char),!,fbug(char_code_int(Char,Code)), only_debug(break). -char_code_int(Char,Code):- fbug(char_code_int(Char,Code)),only_debug(break). - -char_code_to_char(N,S):- atom(N),atom_codes(N,[_]),!,S=N. -char_code_to_char(N,S):- atom(N),!,S=N. -%char_code_to_char(N,S):- code_type(N,graph),atom_codes(S,[N]),atom(S),!. -%char_code_to_char(N,O):- \+ integer(N),char_type(N,_),!,N=O. -%char_code_to_char(32,' '):-!. -%char_code_to_char(N,N):- \+ code_type(N,graph),!. -%char_code_to_char(N,N):- code_type(N,white),!. -char_code_to_char(N,S):- notrace_catch_fail(atom_codes(S,[N])),!. - - - -name_to_charcode(Str,Code):-find_from_name(Str,Code),!. -name_to_charcode(Str,Code):-text_upper(Str,StrU),find_from_name2(StrU,Code). -name_to_charcode(Str,Code):-string_codes(Str,[S,H1,H2,H3,H4|HEX]),memberchk(S,`Uu`),char_type(H4,xdigit(_)), - notrace_catch_fail(read_from_codes([48, 120,H1,H2,H3,H4|HEX],Code)). -name_to_charcode(Str,Code):-string_codes(Str,[S,H1|BASE10]),memberchk(S,`nd`),char_type(H1,digit), - notrace_catch_fail(read_from_codes([H1|BASE10],Code)). - -find_from_name(Str,Code):-string_codes(Str,Chars),lisp_code_name_extra(Code,Chars). -find_from_name(Str,Code):-lisp_code_name(Code,Str). -find_from_name(Str,Code):-string_chars(Str,Chars),lisp_code_name(Code,Chars). - -make_lisp_character(I,O):-quietly(to_char(I,O)). - -f_code_char(CH,CC):- zalwayzz(to_char(CH,CC)),!. -f_name_char(Name,CC):- zalwayzz((def_to_prolog_string(Name,CH),name_to_charcode(CH,Code),to_char(Code,CC))). -f_char_name(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz(code_to_name(CH,CC)). -f_char_int(CH,CC):- zalwayzz(def_is_characterp(CH)),zalwayzz('#\\'(C)=CH),(integer(C)->CC=C;char_code_int(C,CC)). -f_char_code(CH,CC):- f_char_int(CH,CC). - -to_prolog_char('#\\'(X),O):-!,to_prolog_char(X,O). -to_prolog_char(Code,Char):- number(Code),!,zalwayzz(char_code_int(Char,Code)),!. -%to_prolog_char(S,S):- atom(S),char_type(S,_),!. -to_prolog_char(Atom,Char):- name(Atom,[C|Odes]),!, - ((Odes==[] -> char_code_int(Char,C); - zalwayzz((text_to_string(Atom,String),name_to_charcode(String,Code),char_code_int(Char,Code))))). - -code_to_name(Char,Str):- number(Char),Char=Code,!,zalwayzz((code_to_name0(Code,Name),!,text_to_string(Name,Str))). -code_to_name(Char,Str):- zalwayzz((to_prolog_char(Char,PC),char_code_int(PC,Code),code_to_name0(Code,Name),!,text_to_string(Name,Str))). - -code_to_name0(Code,Name):-lisp_code_name_extra(Code,Name). -code_to_name0(Code,Name):-lisp_code_name(Code,Name). -code_to_name0(Code,Name):- Code<32, Ascii is Code+64,atom_codes(Name,[94,Ascii]). -code_to_name0(Code,Name):- code_type(Code,graph),!,atom_codes(Name,[Code]). - - -find_from_name2(Str,Code):-find_from_name(Str,Code). -find_from_name2(Str,Code):-lisp_code_name(Code,Chars),text_upper(Chars,Str). -find_from_name2(Str,Code):-lisp_code_name_extra(Code,Chars),text_upper(Chars,Str). - -text_upper(T,U):-text_to_string_safe(T,S),string_upper(S,U). - -lisp_code_name_extra(0,`Null`). -lisp_code_name_extra(1,`Soh`). -lisp_code_name_extra(2,`^B`). -lisp_code_name_extra(7,`Bell`). -lisp_code_name_extra(7,`bell`). -lisp_code_name_extra(8,`BCKSPC`). -lisp_code_name_extra(10,`Newline`). -lisp_code_name_extra(10,`LF`). -lisp_code_name_extra(10,`Linefeed`). -lisp_code_name_extra(11,`Vt`). -lisp_code_name_extra(27,`Escape`). -lisp_code_name_extra(27,`Esc`). -lisp_code_name_extra(32,`Space`). -lisp_code_name_extra(28,`fs`). -lisp_code_name_extra(13,`Ret`). - - -% @TODO undo this temp speedup -:- set_prolog_flag(all_lisp_char_names,false). -:- use_module('chars.data'). -/* - -(with-open-file (strm "lisp_code_names.pl" :direction :output :if-exists :supersede :if-does-not-exist :create) - (format strm ":- module(lisp_code_names,[lisp_code_name/2]).~%:- set_prolog_flag(double_quotes,chars).~%~%") - (loop for i from 0 to 655360 do (let ((cname (char-name (code-char i))) (uname4 (format () "U~4,'0X" i)) (uname8 (format () "U~8,'0X" i))) - (unless (equal cname uname4) (unless (equal cname uname8) (format strm "lisp_code_name(~A,~S).~%" i cname )))))) -*/ - - -%% remove_incompletes( :TermN, :TermCBefore) is det. -% -% Remove Incompletes. -% -remove_incompletes([],[]). -remove_incompletes([N=_|Before],CBefore):-var(N),!, - remove_incompletes(Before,CBefore). -remove_incompletes([NV|Before],[NV|CBefore]):- - remove_incompletes(Before,CBefore). - -:- export(extract_lvars/3). - -%= - -%% extract_lvars( ?A, ?B, ?After) is det. -% -% Extract Lvars. -% -extract_lvars(A,B,After):- - (get_varname_list(Before)->true;Before=[]), - remove_incompletes(Before,CBefore),!, - copy_lvars(A,CBefore,B,After),!. - -% copy_lvars( VAR,Vars,VAR,Vars):- var(VAR),!. - -%= - -%% copy_lvars( :TermVAR, ?Vars, :TermNV, ?NVars) is det. -% -% Copy Lvars. -% -copy_lvars(Term,Vars,Out,VarsO):- Term ==[],!,zalwayzz((Out=Term,VarsO=Vars)). -copy_lvars( VAR,Vars,Out,VarsO):- var(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). -copy_lvars([H|T],Vars,[NH|NT],VarsO):- !, copy_lvars(H,Vars,NH,SVars),!, copy_lvars(T,SVars,NT,VarsO). -copy_lvars('?'(Inner),Vars,Out,VarsO):- !, copy_lvars(Inner,Vars,NInner,VarsO), zalwayzz((atom(NInner) -> atom_concat_or_rtrace('?',NInner,Out) ; Out = '?'(NInner))),!. -copy_lvars( VAR,Vars,Out,VarsO):- svar(VAR,Name)->zalwayzz(atom(Name)),!,zalwayzz(register_var(Name=Out,Vars,VarsO)). -copy_lvars( VAR,Vars,Out,VarsO):- \+ compound(VAR),!,zalwayzz((Out=VAR,VarsO=Vars)). -copy_lvars(Term,Vars,NTerm,VarsO):- - Term=..[F|Args], % decompose term - (svar(F,_)-> copy_lvars( [F|Args],Vars,NTerm,VarsO); - % construct copy term - (copy_lvars(Args,Vars,NArgs,VarsO), NTerm=..[F|NArgs])),!. - - - -%= - -%% svar( ?Var, ?NameU) is det. -% -% If this is a KIF var, convert to a name for prolog -% -svar(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar(SVAR,UP)). -svar(Var,Name):- var(Var),!,zalwayzz(svar_fixvarname(Var,Name)). -svar('$VAR'(Var),Name):-number(Var),Var > -1, !, zalwayzz(format(atom(Name),'~w',['$VAR'(Var)])),!. -svar('$VAR'(Name),VarName):-!,zalwayzz(svar_fixvarname(Name,VarName)). -svar('?'(Name),NameU):-svar_fixvarname(Name,NameU),!. -svar(_,_):- \+ kif_ok,!,fail. -svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('?',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. -svar([],_):-!,fail. -svar('#'(Name),NameU):-!,svar(Name,NameU),!. -svar('@'(Name),NameU):-svar_fixvarname(Name,NameU),!. -% svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('_',_,VAR),svar_fixvarname(VAR,Name),!. -svar(VAR,Name):-atom(VAR),atom_concat_or_rtrace('@',A,VAR),non_empty_atom(A),svar_fixvarname(VAR,Name),!. - - -:- export(svar_fixvarname/2). - -%= - -%% svar_fixvarname( ?SVARIN, ?UP) is det. -% -% Svar Fixvarname. -% - -svar_fixvarname(SVAR,UP):- nonvar(UP),!,trace_or_throw(nonvar_svar_fixvarname(SVAR,UP)). -svar_fixvarname(SVAR,UP):- svar_fixname(SVAR,UP),!. -svar_fixvarname(SVAR,UP):- fail,trace_or_throw(svar_fixname(SVAR,UP)). - -svar_fixname(Var,NameO):-var(Var),!,variable_name_or_ref(Var,Name),sanity(nonvar(Name)),!,svar_fixvarname(Name,NameO). -svar_fixname('$VAR'(Name),UP):- !,svar_fixvarname(Name,UP). -svar_fixname('@'(Name),UP):- !,svar_fixvarname(Name,UP). -svar_fixname('?'(Name),UP):- !,svar_fixvarname(Name,UP). -svar_fixname('block'(Name),UP):- !,svar_fixvarname(Name,UP). -svar_fixname(SVAR,SVARO):- ok_var_name(SVAR),!,SVARO=SVAR. -svar_fixname('??','_'):-!. -svar_fixname(QA,AU):-atom_concat_or_rtrace('??',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO),atom_concat_or_rtrace('_',AO,AU). -svar_fixname(QA,AO):-atom_concat_or_rtrace('?',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). -svar_fixname(QA,AO):-atom_concat_or_rtrace('@',A,QA),non_empty_atom(A),!,svar_fixvarname(A,AO). -svar_fixname(NameU,NameU):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name),atom_number(Name,_),!. -svar_fixname(NameU,NameUO):-atom_concat_or_rtrace('_',Name,NameU),non_empty_atom(Name), - \+ atom_number(Name,_),!,svar_fixvarname(Name,NameO),atom_concat_or_rtrace('_',NameO,NameUO). -svar_fixname(I,O):- - notrace(( - notrace(catch(fix_varcase(I,M0),_,fail)), - atom_subst(M0,'@','_AT_',M1), - atom_subst(M1,'?','_Q_',M2), - atom_subst(M2,':','_C_',M3), - atom_subst(M3,'-','_',O), - ok_var_name(O))),!. - -%= - -%% fix_varcase( ?I, ?O) is det. -% -% Fix Varcase. -% -fix_varcase(Word,Word):- atom_concat_or_rtrace('_',_,Word),!. -fix_varcase(Word,WordC):- !, atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). -% the cut above stops the rest -fix_varcase(Word,Word):-upcase_atom(Word,UC),UC=Word,!. -fix_varcase(Word,WordC):-downcase_atom(Word,UC),UC=Word,!,atom_codes(Word,[F|R]),to_upper(F,U),atom_codes(WordC,[U|R]). -fix_varcase(Word,Word). % mixed case - -:- export(ok_varname_or_int/1). - -%% ok_varname_or_int( ?Name) is det. -% -% Ok Varname. -% -ok_varname_or_int(Name):- atom(Name),!,ok_var_name(Name). -ok_varname_or_int(Name):- number(Name). - -%% ok_var_name( ?Name) is det. -% -% Ok Varname. -% -ok_var_name(Name):- - notrace(( - quietly_sreader(( atom(Name),atom_codes(Name,[C|_List]),char_type(C,prolog_var_start), - notrace(catch(read_term_from_atom(Name,Term,[variable_names(Vs)]),_,fail)), - !,var(Term),Vs=[RName=RVAR],!,RVAR==Term,RName==Name)))). - -%:- export(ok_codes_in_varname/1). -%ok_codes_in_varname([]). -%ok_codes_in_varname([C|List]):-!,ok_in_varname(C),ok_codes_in_varname(List). - -%:- export(ok_in_varname/1). -%ok_in_varname(C):-sym_char(C),\+member(C,`!@#$%^&*?()`). - - - -%= - -%% atom_upper( ?A, ?U) is det. -% -% Atom Upper. -% -atom_upper(A,U):-string_upper(A,S),quietly_sreader(((atom_string(U,S)))). - - -%= - -%% lisp_read_from_input( ?Forms) is det. -% -% Lisp Read Converted From Input. -% -lisp_read_from_input(Forms):-lisp_read(current_input,Forms),!. - -readCycL(Forms):-lisp_read(current_input,Forms). - -%% lisp_read_from_stream( ?I, ?Forms) is det. -% -% Lisp Read Converted To Simple Form. -% -lisp_read_from_stream(Input,Forms):- - lisp_read(Input,Forms). - - -%% lisp_read( ?I, ?Forms) is det. -% -% Lisp Read Converted To Simple Form. -% -lisp_read(Input,Forms):- - lisp_read_typed(Input, Forms0),!, - quietly_sreader((zalwayzz(to_untyped(Forms0,Forms)))). - - - -%% lisp_read_typed( ?I, -Expr) is det. -% -% Lisp Read, Expression models DCG -% -lisp_read_typed(In,Expr):- track_stream(In,parse_sexpr(In,Expr)),!. -/* -lisp_read_typed(In,Expr):- fail, % old_stream_read - (read_line_to_codes(current_input,AsciiCodes), - (AsciiCodes==[]-> (at_end_of_stream(In) -> (Expr=end_of_file); lisp_read_typed(In,Expr)); - once(zalwayzz(parse_sexpr(AsciiCodes,Expr);lisp_read_typed(In,Expr));read_term_from_codes(AsciiCodes,Expr,[])))). -*/ - - -%= - -%% lowcase( :TermC1, :TermC2) is det. -% -% Lowcase. -% -lowcase([],[]). -lowcase([C1|T1],[C2|T2]) :- lowercase(C1,C2), lowcase(T1,T2). - - -%= - -%% lowercase( ?C1, ?C2) is det. -% -% Lowercase. -% -lowercase(C1,C2) :- C1 >= 65, C1 =< 90, !, C2 is C1+32. -lowercase(C,C). - - -/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Interpretation - -------------- - - Declaratively, execution of a Lisp form is a relation between the - (function and variable) binding environment before its execution - and the environment after its execution. A Lisp program is a - sequence of Lisp forms, and its result is the sequence of their - results. The environment is represented as a pair of association - lists Fs-Vs, associating function names with argument names and - bodies, and variables with values. DCGs are used to implicitly - thread the environment state through. -- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ - - - -%= - -%% codelist_to_forms( ?AsciiCodesList, ?FormsOut) is det. -% -% Codelist Converted To Forms. -% -codelist_to_forms(AsciiCodesList,FormsOut):- - parse_sexpr(AsciiCodesList, Forms0),!, - zalwayzz(def_compile_all(Forms0, FormsOut)),!. - - -/* - -:- export(baseKB:rff/0). - -baseKB:rff:-baseKB:rff(dbginfo(n(first)),dbginfo(n(retry)),dbginfo(n(success)),dbginfo(n(failure))). - -:- export(baseKB:rff/4). -baseKB:rff(OnFirst,OnRetry,OnSuccess,OnFailure) :- CU = was(never,first), - call_cleanup(( - process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), - (nb_setarg(1,CU,first));((nb_setarg(1,CU,second)),!,fail)), - (nb_setarg(2,CU,second),process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure),dbginfo(cleanup(CU)))), - once(( - process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure), - CU \= was(second, _))). - -:- export(process_rff/5). -process_rff(CU,OnFirst,OnRetry,OnSuccess,OnFailure):- - dbginfo(next(CU)), - once(((CU==was(first,first)->OnFirst;true), - (CU==was(second,first)->OnRetry;true), - (CU==was(second,second)->OnFailure;true), - (CU==was(first,second)-e>OnSuccess;true))). - - -*/ - - -/* -:- prolog_load_context(directory,Dir), - DirFor = plarkc, - (( \+ user:file_search_path(DirFor,Dir)) ->asserta(user:file_search_path(DirFor,Dir));true), - absolute_file_name('../../../../',Y,[relative_to(Dir),file_type(directory)]), - (( \+ user:file_search_path(pack,Y)) ->asserta(user:file_search_path(pack,Y));true). -:- attach_packs. -:- initialization(attach_packs). -*/ - -% [Required] Load the Logicmoo Library Utils -% = % :- ensure_loaded(logicmoo(logicmoo_utils)). - -% % :- ensure_loaded(logicmoo(plarkc/mpred_cyc_api)). - - -:- export(fixvars/4). - -%= - -%% fixvars( ?P, ?VALUE2, :TermARG3, ?P) is det. -% -% Fixvars. -% -fixvars(P,_,[],P):-!. -fixvars(P,N,[V|VARS],PO):- - quietly_sreader((atom_string(Name,V))), - svar_fixvarname(Name,NB),Var = '$VAR'(NB), - substM(P,'$VAR'(N),Var,PM0), - substM(PM0,'$VAR'(Name),Var,PM), - % (get_varname_list(Vs)->true;Vs=[]), - % append(Vs,[Name=Var],NVs), - % nput_variable_names( NVs), - N2 is N + 1, fixvars(PM,N2,VARS,PO). - - - - -non_empty_atom(A1):- atom(A1),atom_length(A1,AL),!,AL>0. - -:- meta_predicate(sexpr_sterm_to_pterm(+,?,?)). -:- meta_predicate(sexpr_sterm_to_pterm_list(+,?,?)). - -is_relation_sexpr('=>'). -is_relation_sexpr('<=>'). -is_relation_sexpr('==>'). -is_relation_sexpr('<==>'). -is_relation_sexpr('not'). -is_relation_sexpr(typeGenls). - -is_va_relation('or'). -is_va_relation('and'). -%= - - -is_exact_symbol(N,_):- \+ atom(N),!,fail. -is_exact_symbol(N,P):- nonvar(P),!,is_exact_symbol(N,PP),zalwayzz(P=PP). -is_exact_symbol(':-',':-'). -is_exact_symbol('?-','?-'). -is_exact_symbol('??',_). - -%:- baseKB:ensure_loaded(logicmoo('plarkc/logicmoo_i_cyc_rewriting')). - -maybe_var(S,Name,'$VAR'(Name)):- S=='?',atom(Name),!. - -%% sexpr_sterm_to_pterm(?VAR, ?V) is det. -% -% S-expression Sterm Converted To Pterm. -% -sexpr_sterm_to_pterm(S,P):- sexpr_sterm_to_pterm(0,S,P). - - -sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ compound(STERM), !. -sexpr_sterm_to_pterm_pre_list(_,STERM,STERM):- \+ is_list(STERM), !. -% sexpr_sterm_to_pterm_pre_list(_,[S|STERM],[S|STERM]):- STERM == [], !. -sexpr_sterm_to_pterm_pre_list(TD,[S0|STERM0],[S|STERM]):- - (is_list(S0)->sexpr_sterm_to_pterm(TD,S0,S);sexpr_sterm_to_pterm_pre_list(TD,S0,S)), - sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM). - -sexpr_sterm_to_pterm(_TD,VAR,VAR):-is_ftVar(VAR),!. -sexpr_sterm_to_pterm(_TD,S,P):- is_exact_symbol(S,P),!. -sexpr_sterm_to_pterm(_TD,'#'(S),P):- is_exact_symbol(S,P),!. -sexpr_sterm_to_pterm(_TD,VAR,'$VAR'(Name)):- atom(VAR),svar(VAR,Name),!. - -% sexpr_sterm_to_pterm(TD,List,PTERM):- append(Left,[S,Name|TERM],List),maybe_var(S,Name,Var),!,append(Left,[Var|TERM],NewList), sexpr_sterm_to_pterm(TD,NewList,PTERM). -% sexpr_sterm_to_pterm(TD,[S|TERM],dot_holds(PTERM)):- \+ (is_list(TERM)),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. -/* -sexpr_sterm_to_pterm(TD,[S,Vars|TERM],PTERM):- nonvar(S), - call_if_defined(common_logic_snark:is_quantifier(S)), - zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST), - PTERM=..[S,Vars|PLIST])),!. -*/ - -sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- var(S), TD1 is TD + 1, sexpr_sterm_to_pterm_pre_list(TD1,STERM0,STERM), sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. -sexpr_sterm_to_pterm(_,[S,STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. -sexpr_sterm_to_pterm(_,[S|STERM0],PTERM):- is_quoter(S),sexpr_sterm_to_pterm_pre_list(0,STERM0,STERM), !,PTERM=..[S,STERM],!. -sexpr_sterm_to_pterm(TD,[S|STERM0],PTERM):- sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), is_list(STERM), - next_args_are_lists_unless_string(S,NonList), - length(LEFT,NonList),append(LEFT,[List|RIGHT],STERM),is_list(List), - TD1 is TD+1, - sexpr_sterm_to_pterm_list(TD1,LEFT,PLEFTLIST), - sexpr_sterm_to_pterm_list(0,RIGHT,PRIGHTLIST), - append(PLEFTLIST,[List|PRIGHTLIST],PLIST), - s_univ(TD,PTERM,[S|PLIST]),!. - -sexpr_sterm_to_pterm(TD,STERM0,PTERM):- TD1 is TD+1,sexpr_sterm_to_pterm_pre_list(TD,STERM0,STERM), - is_list(STERM),!, sexpr_sterm_to_pterm_list(TD1,STERM,PLIST),s_univ(TD,PTERM,PLIST),!. -sexpr_sterm_to_pterm(_TD,VAR,VAR). - -is_quoter('#BQ'):- is_common_lisp. -is_quoter('#COMMA'):- is_common_lisp. -is_quoter('quote'). - -next_args_are_lists_unless_string(defmacro,1). -next_args_are_lists_unless_string(defun,1). -next_args_are_lists_unless_string(let,0). -next_args_are_lists_unless_string('let*',0). - -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- (number(S); (atom(S),fail,atom_concat_or_rtrace(_,'Fn',S))),sexpr_sterm_to_pterm_list(TD,[S|TERM],PTERM),!. -%sexpr_sterm_to_pterm(TD,[S],O):- is_ftVar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. -%sexpr_sterm_to_pterm(TD,[S],O):- nonvar(S),sexpr_sterm_to_pterm(TD,S,Y),!,s_univ(TD,O,[Y]),!. -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_ftVar(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- \+ atom(S), sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[t,S|PLIST]),!. -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- S==and,!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(',',PLIST,PTERM))). -% sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_va_relation(S),!,zalwayzz((maplist(sexpr_sterm_to_pterm,TERM,PLIST),list_to_conjuncts(S,PLIST,PTERM))). -%sexpr_sterm_to_pterm(TD,[S|TERM],PTERM):- is_relation_sexpr(S),zalwayzz((sexpr_sterm_to_pterm_list(TD,TERM,PLIST),PTERM=..[S|PLIST])),!. -%sexpr_sterm_to_pterm(TD,STERM,PTERM):- STERM=..[S|TERM],sexpr_sterm_to_pterm_list(TD,TERM,PLIST),s_univ(TD,PTERM,[S|PLIST]),!. - -s_functor(F):- \+ atom(F), !,fail. -s_functor(F):- \+ atom_concat('?',_,F). - -s_univ(1,S,S):-!. -s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),length(ARGS,A),l_arity(F,A),P=..[F|ARGS]. -s_univ(0,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. -s_univ(_TD,P,[F|ARGS]):- s_functor(F),is_list(ARGS),P=..[F|ARGS]. -s_univ(_TD,P,S):-P=S. - -l_arity(F,A):- clause_b(arity(F,A)). -l_arity(function,1). -l_arity(quote,1). -l_arity('#BQ',1):- is_common_lisp. -l_arity(F,A):-current_predicate(F/A). -l_arity(_,1). - -%% sexpr_sterm_to_pterm_list(TD, ?VAR, ?VAR) is det. -% -% S-expression Converted To Pterm List. -% - -sexpr_sterm_to_pterm_list(TD,TERM,PTERMO):- is_list(TERM),append(BEFORE,[VAR],TERM),atom(VAR), - atom_concat_or_rtrace('@',RVAR,VAR),non_empty_atom(RVAR),svar_fixvarname(RVAR,V),!,append(BEFORE,'$VAR'(V),PTERM), - sexpr_sterm_to_pterm_list0(TD,PTERM,PTERMO). -sexpr_sterm_to_pterm_list(TD,TERM,PTERM):- sexpr_sterm_to_pterm_list0(TD,TERM,PTERM). - -sexpr_sterm_to_pterm_list0(_,VAR,VAR):-is_ftVar(VAR),!. -sexpr_sterm_to_pterm_list0(_,[],[]):-!. -sexpr_sterm_to_pterm_list0(TD,[S|STERM],[P|PTERM]):-sexpr_sterm_to_pterm(TD,S,P),sexpr_sterm_to_pterm_list0(TD,STERM,PTERM),!. -sexpr_sterm_to_pterm_list0(_,VAR,VAR). - - -/*=================================================================== -% input_to_forms/3 does less consistancy checking then conv_to_sterm - -Always a S-Expression: 'WFFOut' placing variables in 'VARSOut' - -|?-input_to_forms(`(isa a b)`,Clause,Vars). -Clause = [isa,a,b] -Vars = _h70 - -| ?- input_to_forms(`(isa a (b))`,Clause,Vars). -Clause = [isa,a,[b]] -Vars = _h70 - -|?-input_to_forms(`(list a b )`,Clause,Vars) -Clause = [list,a,b] -Vars = _h70 - -?- input_to_forms_debug("(=> (isa ?NUMBER ImaginaryNumber) (exists (?REAL) (and (isa ?REAL RealNumber) (equal ?NUMBER (MultiplicationFn ?REAL (SquareRootFn -1))))))"). - -?- input_to_forms_debug("(=> (isa ?PROCESS DualObjectProcess) (exists (?OBJ1 ?OBJ2) (and (patient ?PROCESS ?OBJ1) (patient ?PROCESS ?OBJ2) (not (equal ?OBJ1 ?OBJ2)))))"). - - -| ?- input_to_forms(`(genlMt A ?B)`,Clause,Vars). -Clause = [genlMt,'A',_h998] -Vars = [=('B',_h998)|_h1101] - -| ?- input_to_forms(` - (goals Iran (not (exists (?CITIZEN) - (and (citizens Iran ?CITIZEN) (relationExistsInstance maleficiary ViolentAction ?CITIZEN)))))` - ). - -Clause = [goals,Iran,[not,[exists,[_h2866],[and,[citizens,Iran,_h2866],[relationExistsInstance,maleficiary,ViolentAction,_h2866]]]]] -Vars = [=(CITIZEN,_h2866)|_h3347] - -| ?- input_to_forms_debug(` -(queryTemplate-Reln QuestionTemplate definitionalDisplaySentence - (NLPatternList - (NLPattern-Exact "can you") - (RequireOne - (NLPattern-Word Acquaint-TheWord Verb) - (NLPattern-Word Tell-TheWord Verb)) - (RequireOne - (NLPattern-Exact "me with") - (NLPattern-Exact "me what")) - (OptionalOne - (WordSequence "the term") "a" "an") - (NLPattern-Template NPTemplate :THING) - (OptionalOne "is" ) - (OptionalOne TemplateQuestionMarkMarker)) - (definitionalDisplaySentence :THING ?SENTENCE)) ` -). - -| ?- input_to_forms_debug(` - (#$STemplate #$bioForProposal-short - (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) - (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) - (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2))` - ). - -input_to_forms_debug("(=> (disjointDecomposition ?CLASS @ROW) (forall (?ITEM1 ?ITEM2) (=> (and (inList ?ITEM1 (ListFn @ROW)) (inList ?ITEM2 (ListFn @ROW)) (not (equal ?ITEM1 ?ITEM2))) (disjoint ?ITEM1 ?ITEM2))))"). - - -input_to_forms_debug( -` - (#$STemplate #$bioForProposal-short - (#$NLPatternList (#$NLPattern-Template #$NPTemplate :ARG1) - (#$NLPattern-Exact "short bio for use in proposals" ) (#$NLPattern-Word #$Be-TheWord #$Verb) - (#$NLPattern-Exact "") (#$NLPattern-Template #$NPTemplate :ARG2)) (#$bioForProposal-short :ARG1 :ARG2)) ` - ). - -% txt_to_codes("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X). -input_to_forms_debug("(documentation Predicate EnglishLanguage \"A &%Predicate is a sentence-forming &%Relation. Each tuple in the &%Relation is a finite, ordered sequence of objects. The fact that a particular tuple is an element of a &%Predicate is denoted by '(*predicate* arg_1 arg_2 .. arg_n)', where the arg_i are the objects so related. In the case of &%BinaryPredicates, the fact can be read as `arg_1 is *predicate* arg_2' or `a *predicate* of arg_1 is arg_2'.\")",X,Y). - -// ==================================================================== */ -:- export(current_input_to_forms/2). - - -%% input_to_forms( ?FormsOut, ?Vars) is det. -% -% Input Converted To Forms. -% -current_input_to_forms(FormsOut,Vars):- - current_input(In), - input_to_forms(In, FormsOut,Vars). - -show_wff_debug(Wff,Vs):- nonvar(Wff),Wff=(H=B),!,show_wff_debug((H:-B),Vs). -show_wff_debug(Wff,Vs):- fmt("\n"), - must_or_rtrace(portray_clause_w_vars(Wff,Vs,[])),!. - -% input_to_forms_debug(String):- sumo_to_pdkb(String,Wff),dbginfo(Wff),!. -input_to_forms_debug(String):- - input_to_forms_debug(String,['=']). - -input_to_forms_debug(String,M:Decoders):- - setup_call_cleanup( - fmt("% ========================\n"), - (get_varnames(Was), show_wff_debug(input=String,Was), - input_to_forms(String,Wff,Vs), - b_setval('$variable_names',Vs), - show_wff_debug(to_forms=Wff,Vs), - do_decoders(Wff,Vs,M,Decoders),!, - ignore((nonvar(Vs),Vs\==[], show_wff_debug(vars=Vs,Vs)))), - fmt("\n% ========================\n")). - -do_decoders(_,_,_,[]):-!. -do_decoders(Wff,Vs,M,[Decoder|Decoders]):- !, - ((M:call(Decoder,Wff,WffO), ignore((Wff \== WffO , show_wff_debug((M:Decoder:-WffO),Vs)))) - -> do_decoders(WffO,Vs,M,Decoders) - ; - (fmt(decoder_failed(M:Decoder)), - do_decoders(Wff,Vs,M,Decoders))). -do_decoders(Wff,Vs,M,Decoder):- do_decoders(Wff,Vs,M,[Decoder]). - -:- export(input_to_forms/2). -%% input_to_forms( ?In, ?FormsOut) is det. -% -% Get Input Converted To Forms. -% -input_to_forms(Codes,FormsOut):- - input_to_forms(Codes,FormsOut,Vars) -> - add_variable_names(Vars). - -:- export(input_to_forms/3). - -%% input_to_forms( ?In, ?FormsOut, ?Vars) is det. -% -% Get Input Converted To Forms. -% -input_to_forms(Codes,FormsOut,Vars):- - push_varnames(_) -> - quietly_sreader((input_to_forms0(Codes,FormsOut,Vars))). - -is_variable_names_safe(Vars):- var(Vars),!. -is_variable_names_safe([N=V|Vars]):- !, - is_name_variable_safe(N,V) -> - is_variable_names_safe(Vars). -is_variable_names_safe([]). - -is_name_variable_safe(N,V):- - ok_var_name(N)-> var(V). - - -get_varnames(Was):- nb_current('$variable_names',Was)->true;Was=[]. - -push_varnames(New):- - (nonvar(New)-> b_setval('$variable_names',New) - ; (get_varnames(Was), Was = New, b_setval('$variable_names',Was))). - -add_variable_names(Vars):- var(Vars),!. -add_variable_names(N=V):- !, ignore(set_varname_s(N,V)). -add_variable_names([NV|Vars]):- add_variable_names(NV),!, add_variable_names(Vars). -add_variable_names([]). - -set_varname_s(N,V):- get_varnames(Was), set_varname4(Was,N,V,New),b_setval('$variable_names',New). - -set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), NN==N,!, (V=VV->true;setarg(2,NV,V)), New = Was. -set_varname4(Was,N,V,New):- member(NV,Was),NV=(NN=VV), VV==V,!, (N=NN->true;setarg(1,NV,N)), New = Was. -set_varname4(Was,N,V,[N=V|Was]). - - -set_variable_names_safe(Vars):- - is_variable_names_safe(Vars)-> - b_setval('$variable_names',Vars); true. - -input_to_forms0(Codes,FormsOut,Vars):- - % is_openable(Codes),!, - parse_sexpr(Codes, Forms0),!, - once((to_untyped(Forms0, Forms1), - extract_lvars(Forms1,FormsOut,Vars))). - -input_to_forms0(Forms,FormsOut,Vars):- - (to_untyped(Forms, Forms1) -> - extract_lvars(Forms1,FormsOut,Vars)-> true),!. - - -/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Lisprolog -- Interpreter for a simple Lisp. Written in Prolog. - Written Nov. 26th, 2006 by Markus Triska (triska@gmx.at). - Public domain code. -- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ - -%:- style_check(-singleton). -%:- style_check(-discontiguous). -% :- style_check(-atom). -/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Parsing -- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ - - -tstl:- tstl('./ontologyportal_sumo/Merge.kif'), - tstl('./ontologyportal_sumo/Translations/relations-en.txt'), - tstl('./ontologyportal_sumo/english_format.kif'), - tstl('./ontologyportal_sumo/domainEnglishFormat.kif'), - tstl('./ontologyportal_sumo/Mid-level-ontology.kif'), - !. - -writeqnl(O):- writeq(O),nl. - - - -%:- fixup_exports. -%:- endif. - diff --git a/metta_vspace/pyswip_lng/metta_reader.pl b/metta_vspace/pyswip_lng/metta_reader.pl new file mode 120000 index 00000000..c1896ea3 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_reader.pl @@ -0,0 +1 @@ +../pyswip/metta_reader.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_rust.pl b/metta_vspace/pyswip_lng/metta_rust.pl deleted file mode 100755 index fcae66a4..00000000 --- a/metta_vspace/pyswip_lng/metta_rust.pl +++ /dev/null @@ -1,5 +0,0 @@ - - -:- ensure_loaded(metta_python). -:- ensure_loaded(metta_interp). - diff --git a/metta_vspace/pyswip_lng/metta_rust.pl b/metta_vspace/pyswip_lng/metta_rust.pl new file mode 120000 index 00000000..e70d25da --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_rust.pl @@ -0,0 +1 @@ +../pyswip/metta_rust.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_server.pl b/metta_vspace/pyswip_lng/metta_server.pl deleted file mode 100755 index 94bee387..00000000 --- a/metta_vspace/pyswip_lng/metta_server.pl +++ /dev/null @@ -1,95 +0,0 @@ - -:- use_module(library(socket)). -:- use_module(library(thread)). - -call_wdet(Goal,WasDet):- call(Goal),deterministic(WasDet). -% Helper to parse Server and Port -parse_server_port(ServerPort,DefaultPort, Server, Port) :- - ( ServerPort = Server:Port -> true - ; integer(ServerPort) -> Server = localhost, Port = ServerPort - ; Server = ServerPort, Port = DefaultPort % Default port if none specified - ). - -start_vspace_server(Port) :- - thread_create(run_vspace_server(Port),_,[detached(true),alias(vspace_server)]). - -run_vspace_server(Port) :- - tcp_socket(Socket), tcp_bind(Socket, Port), tcp_listen(Socket, 5), tcp_open_socket(Socket, ListenFd), - fbug(run_vspace_server(Port)), - accept_vspace_connections(ListenFd). - -accept_vspace_connections(ListenFd) :- - tcp_accept(ListenFd, ClientFd, ClientAddr), - format(atom(ThreadAlias), 'client_~w', [ClientAddr]), - thread_create(setup_call_cleanup( - tcp_open_socket(ClientFd, Stream), - ignore(handle_vspace_client(Stream)), - catch(close(Stream),_,true)), _, [detached(true), alias(ThreadAlias)] ), - accept_vspace_connections(ListenFd). - -handle_vspace_client(Stream) :- - read_term(Stream, Goal,[]), - ( Goal \= end_of_file - -> ( catch(call_wdet(Goal,WasDet), Error, true) - *-> ( var(Error) -> send_term(Stream, success(Goal,WasDet)) ; send_term(Stream,error(Error))) - ;send_term(Stream, 'failed'))), - handle_vspace_client(Stream). - -% Start the server automatically on a default port or a specified port -:- dynamic vspace_port/1. -start_vspace_server:- ( vspace_port(Port) -> start_vspace_server(Port); start_vspace_server(3023) ). - -:- initialization(start_vspace_server). - -% Connects to the server and sends the goal -remote_call(ServerPort, Goal) :- - setup_call_cleanup( - (connect_to_server(ServerPort, Stream),send_term(Stream, Goal)), - read_response(Stream,Goal), - close(Stream)). - -% Helper to establish connection -connect_to_server(HostPort, Stream) :- - parse_server_port(HostPort, 3023, Host, Port), - tcp_socket(Socket), - tcp_connect(Socket, Host:Port), - tcp_open_socket(Socket, Stream). - -% Helper to send goal and receive response -send_term(Stream, Goal) :- write_canonical(Stream, Goal),writeln(Stream, '.'), flush_output(Stream). - - -% Read and process the server's response -read_response(Stream,Goal) :- - flush_output(Stream), - repeat, read_term(Stream,Response,[]), - (Response == failed -> (!,fail) ; - (Response = error(Throw) -> throw(Throw) ; - ((Response = success(Goal,WasDet)), - (WasDet==true-> (!, true) ; true)))). - -% Example usage -% ?- remote_call('localhost', member(X, [1,2,3])). - -:- dynamic predicate_server/2. % Maps predicate to server - -% Registers a predicate to a server -register_predicate_server(Predicate, Server) :- assertz(predicate_server(Predicate, Server)). - -% Meta-interpreter with cut handling -execute_goal(Goal, IsCut) :- - predicate_server(Goal, Server), !, - remote_call(Server, Goal), % If the goal is registered for a server, call remotely - IsCut = _. -execute_goal(!, IsCut) :- !, IsCut = cut. % Handle cuts -execute_goal(Goal, IsCut) :- predicate_property(Goal,numberr_of_clauses(_)),!, - clause(Goal, Body), % Retrieve the clause body for the goal - execute_goal(Body, IsCut), - (nonvar(IsCut)->!;true). -execute_goal((SubGoal1, SubGoal2), IsCut) :- !, execute_goal(SubGoal1, IsCut), execute_goal(SubGoal2, IsCut). -execute_goal((SubGoal1; SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut); execute_goal(SubGoal2, IsCut)). -execute_goal((SubGoal1 -> SubGoal2), IsCut) :- !, (execute_goal(SubGoal1, IsCut) -> execute_goal(SubGoal2, IsCut)). -execute_goal(findall(X, Y, Z), _) :- !, findall(X, execute_goal(Y, _), Z). -execute_goal(forall(X, Y), _) :- !, forall(execute_goal(X, _), execute_goal(Y, _)). -execute_goal(SubGoal, _IsCut) :- call_wdet(SubGoal, _WasDet). - diff --git a/metta_vspace/pyswip_lng/metta_server.pl b/metta_vspace/pyswip_lng/metta_server.pl new file mode 120000 index 00000000..6d104d75 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_server.pl @@ -0,0 +1 @@ +../pyswip/metta_server.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_space.pl b/metta_vspace/pyswip_lng/metta_space.pl deleted file mode 100755 index 954c28dc..00000000 --- a/metta_vspace/pyswip_lng/metta_space.pl +++ /dev/null @@ -1,679 +0,0 @@ -:- encoding(iso_latin_1). -:- flush_output. -:- setenv('RUST_BACKTRACE',full). -:- ensure_loaded(metta_compiler). -%:- ensure_loaded(metta_compiler). -% TODO move non flybase specific code between here and the compiler -:- ensure_loaded(flybase_main). - -:- multifile(is_pre_statistic/2). -:- dynamic(is_pre_statistic/2). -save_pre_statistic(Name):- is_pre_statistic(Name,_)-> true; (statistics(Name,AS),term_number(AS,FN),assert(is_pre_statistic(Name,FN))). -pre_statistic(N,V):- is_pre_statistic(N,V)-> true ; V = 0. -post_statistic(N,V):- statistics(N,VV),term_number(VV,FV),pre_statistic(N,WV), V0 is FV-WV, (V0<0 -> V = 0 ; V0=V). -term_number(T,N):- sub_term(N,T),number(N). - - -call_match([G]):-!, call(G). -call_match([G|GG]):- !, call(G), call_match(GG). -call_match(G):- call(G). - - -:- dynamic(repeats/1). -:- dynamic(not_repeats/1). -assert_new(P):- call(P),!,assert_new1(repeats(P)). -assert_new(P):- assert(P), flag(assert_new,TA,TA+1),assert_new1(not_repeats(P)),!. - -retract1(P):- \+ call(P),!. -retract1(P):- ignore(\+ retract(P)). - -assert_new1(P):- \+ \+ call(P),!. -assert_new1(P):- assert(P). - - -:- dynamic(fb_pred/3). -:- dynamic(mod_f_a/3). -decl_m_fb_pred(Mod,Fn,A):- var(Mod),!,mod_f_a(Mod,Fn,A). -decl_m_fb_pred(Mod,Fn,A):- mod_f_a(Mod,Fn,A)->true;(dynamic(Mod:Fn/A),assert(mod_f_a(Mod,Fn,A))). -:- dynamic(fb_pred_file/3). -decl_fb_pred(Fn,A):- - (fb_pred(Fn,A)-> true; (dynamic(Fn/A),assert(fb_pred(Fn,A)))), - ignore((nb_current(loading_file,File), - (fb_pred_file(Fn,A,File)-> true; assert(fb_pred_file(Fn,A,File))))). -% Import necessary libraries -:- use_module(library(readutil)). - - -skip(_). - -% =============================== -% MeTTa Python incoming interface -% =============================== - -% ============================ -% %%%% Atom Manipulations -% ============================ - -% Clear all atoms from a space -'clear-atoms'(SpaceNameOrInstance) :- - debug_metta(['clear-atoms',SpaceNameOrInstance]), - space_type_method(Type,clear_space,Method), call(Type,SpaceNameOrInstance),!, - debug_metta(['type-method',Type,Method]), - call(Method,SpaceNameOrInstance). - -% Add an atom to the space -'add-atom'(SpaceNameOrInstance, Atom) :- % debug_metta(['add-atom',SpaceNameOrInstance, Atom]), - space_type_method(Type,add_atom,Method), call(Type,SpaceNameOrInstance),!, - if_t((SpaceNameOrInstance\=='&self' ; Type\=='is_asserted_space'), - debug_metta(['type-method',Type,Method,SpaceNameOrInstance,Atom])), - call(Method,SpaceNameOrInstance,Atom). -% Add Atom -'add-atom'(Environment, AtomDeclaration, Result):- eval_args(['add-atom', Environment, AtomDeclaration], Result). - -% remove an atom from the space -'remove-atom'(SpaceNameOrInstance, Atom) :- - debug_metta(['remove-atom',SpaceNameOrInstance, Atom]), - space_type_method(Type,remove_atom,Method), call(Type,SpaceNameOrInstance),!, - debug_metta(['type-method',Type,Method]), - call(Method,SpaceNameOrInstance,Atom). -% Remove Atom -'remove-atom'(Environment, AtomDeclaration, Result):- eval_args(['remove-atom', Environment, AtomDeclaration], Result). - -% Add an atom to the space -'replace-atom'(SpaceNameOrInstance, Atom, New) :- - debug_metta(['replace-atom',SpaceNameOrInstance, Atom, New]), - space_type_method(Type,replace_atom,Method), call(Type,SpaceNameOrInstance),!, - debug_metta(['type-method',Type,Method]), - call(Method,SpaceNameOrInstance,Atom, New). -% Replace Atom -'atom-replace'(Environment, OldAtom, NewAtom, Result):- eval_args(['atom-replace', Environment, OldAtom, NewAtom], Result). - -% Count atoms in a space -'atom-count'(SpaceNameOrInstance, Count) :- - debug_metta(['atom-count',SpaceNameOrInstance]), - space_type_method(Type,atom_count,Method), call(Type,SpaceNameOrInstance),!, - call(Method,SpaceNameOrInstance,Count), - debug_metta(['type-method-result',Type,Method,Count]). -% Count Atoms -'atom-count'(Environment, Count):- eval_args(['atom-count', Environment], Count). - -% Fetch all atoms from a space -'get-atoms'(SpaceNameOrInstance, AtomsL) :- - debug_metta(['get-atoms',SpaceNameOrInstance]), - space_type_method(Type,get_atoms,Method), call(Type,SpaceNameOrInstance),!, - call(Method,SpaceNameOrInstance, AtomsL), - length(AtomsL,Count), - debug_metta(['type-method-result',Type,Method,Count]). -% Get Atoms -'get-atoms'(Environment, Atoms):- eval_args(['get-atoms', Environment], Atoms). - -% Iterate all atoms from a space -'atoms_iter'(SpaceNameOrInstance, Iter) :- - debug_metta(['atoms_iter',SpaceNameOrInstance]), - space_type_method(Type,atoms_iter,Method), call(Type,SpaceNameOrInstance),!, - call(Method,SpaceNameOrInstance, Iter), - debug_metta(['type-method-result',Type,Method,Iter]). - -% Match all atoms from a space -'atoms_match'(SpaceNameOrInstance, Atoms, Template, Else) :- - space_type_method(Type,atoms_match,Method), call(Type,SpaceNameOrInstance),!, - call(Method,SpaceNameOrInstance, Atoms, Template, Else), - debug_metta(['type-method-result',Type,Method,Atoms, Template, Else]). - - -% Query all atoms from a space -'space_query'(SpaceNameOrInstance, QueryAtom, Result) :- - space_type_method(Type,query,Method), call(Type,SpaceNameOrInstance),!, - call(Method,SpaceNameOrInstance, QueryAtom, Result), - debug_metta(['type-method-result',Type,Method,Result]). - - -subst_pattern_template(SpaceNameOrInstance, Pattern, Template) :- - debug_metta([subst_pattern_template,SpaceNameOrInstance, Pattern, Template]), - 'atoms_match'(SpaceNameOrInstance, Pattern, Template, []). - -/* -space_query_vars(SpaceNameOrInstance, Query, Vars) :- is_as_nb_space(SpaceNameOrInstance),!, - fetch_or_create_space(SpaceNameOrInstance, Space), - call_metta(Space,Query,Vars). -*/ -:- dynamic(was_asserted_space/1). - -was_asserted_space('&flybase'). -was_asserted_space('&self'). -was_asserted_space('&attentional_focus'). -was_asserted_space('&belief_events'). -was_asserted_space('&goal_events'). -was_asserted_space('&tempset'). -was_asserted_space('&concepts'). -was_asserted_space('&belief_events'). - -is_asserted_space(X):- was_asserted_space(X). -is_asserted_space(X):- \+ is_as_nb_space(X), \+ py_named_space(X),!. - -is_python_space_not_prolog(X):- \+ is_as_nb_space(X), \+ is_asserted_space(X). - -:- dynamic(is_python_space/1). - -:- dynamic(py_named_space/1). - -%py_named_space('&self'). -%py_named_space('&vspace'). -% Function to check if an atom is registered as a space name -:- dynamic is_registered_space_name/1. -is_as_nb_space('&nb'). -is_as_nb_space(G):- is_valid_nb_space(G) -> true ; - is_registered_space_name(G),nb_current(G,S),is_valid_nb_space(S). - -is_nb_space(G):- nonvar(G), is_as_nb_space(G). -% ============================ -% %%%% Pattern Matching -% ============================ -% Pattern Matching with an else branch -'match'(Environment, Pattern, Template, ElseBranch, Result):- eval_args(['match', Environment, Pattern, Template, ElseBranch], Result). -% Pattern Matching without an else branch -'match'(Environment, Pattern, Template, Result):- eval_argss(['match', Environment, Pattern, Template], Result). -%'match'(_Environment, Pattern, Template, Result):- callable(Pattern),!, call(Pattern),Result=Template. -%'match'(_Environment, Pattern, Template, Result):- !, is_True(Pattern),Result=Template. - - -'new-space'(Space):- gensym('hyperon::space::DynSpace@_',Name), fetch_or_create_space(Name, Space). - -:- dynamic(is_python_space/1). -% =============================== -% MeTTa Python incoming interface -% =============================== - -:- multifile(space_type_method/3). -:- dynamic(space_type_method/3). -space_type_method(is_as_nb_space,new_space,init_space). -space_type_method(is_as_nb_space,clear_space,clear_nb_atoms). -space_type_method(is_as_nb_space,add_atom,add_nb_atom). -space_type_method(is_as_nb_space,remove_atom,remove_nb_atom). -space_type_method(is_as_nb_space,replace_atom,replace_nb_atom). -space_type_method(is_as_nb_space,atom_count,atom_nb_count). -space_type_method(is_as_nb_space,get_atoms,get_nb_atoms). -%space_type_method(is_as_nb_space,get_atoms,arg(1)). -space_type_method(is_as_nb_space,atom_iter,atom_nb_iter). -%space_type_method(is_as_nb_space,query,space_nb_query). - -% Clear all atoms from a space -clear_nb_atoms(SpaceNameOrInstance) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - nb_setarg(1, Space, []). - -% Add an atom to the space -add_nb_atom(SpaceNameOrInstance, Atom) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - arg(1, Space, Atoms), - NewAtoms = [Atom | Atoms], - nb_setarg(1, Space, NewAtoms). - -% Count atoms in a space -atom_nb_count(SpaceNameOrInstance, Count) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - arg(1, Space, Atoms), - length(Atoms, Count). - -% Remove an atom from a space -remove_nb_atom(SpaceNameOrInstance, Atom) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - arg(1, Space, Atoms), - select(Atom, Atoms, UpdatedAtoms), - nb_setarg(1, Space, UpdatedAtoms). - -% Fetch all atoms from a space -get_nb_atoms(SpaceNameOrInstance, Atoms) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - arg(1, Space, Atoms). - -% Replace an atom in the space -replace_nb_atom(SpaceNameOrInstance, OldAtom, NewAtom) :- - fetch_or_create_space(SpaceNameOrInstance, Space), - arg(1, Space, Atoms), - ( (select(Found, Atoms, TempAtoms),OldAtom=@=Found) - -> NewAtoms = [NewAtom | TempAtoms], - nb_setarg(1, Space, NewAtoms) - ; false - ). - - - -% Function to confirm if a term represents a space -is_valid_nb_space(Space):- compound(Space),functor(Space,'Space',_). - -% Find the original name of a given space -space_original_name(Space, Name) :- - is_registered_space_name(Name), - nb_current(Name, Space). - -% Register and initialize a new space -init_space(Name) :- - Space = 'Space'([]), - asserta(is_registered_space_name(Name)), - nb_setval(Name, Space). - -fetch_or_create_space(Name):- fetch_or_create_space(Name,_). -% Fetch an existing space or create a new one -fetch_or_create_space(NameOrInstance, Space) :- - ( atom(NameOrInstance) - -> (is_registered_space_name(NameOrInstance) - -> nb_current(NameOrInstance, Space) - ; init_space(NameOrInstance), - nb_current(NameOrInstance, Space)) - ; is_valid_nb_space(NameOrInstance) - -> Space = NameOrInstance - ; writeln('Error: Invalid input.') - ), - is_valid_nb_space(Space). - - -% Match Pattern in Space and produce Template -'match'(Space, Pattern, Template) :- - 'get-atoms'(Space, Atoms), - 'match-pattern'(Atoms, Pattern, Template). - -% Simple pattern match -'match-pattern'([], _, []). -'match-pattern'([H |_T], H, H) :- !. -'match-pattern'([_H| T], Pattern, Template) :- 'match-pattern'(T, Pattern, Template). - -%is_python_space(X):- python_object(X). - -ensure_space(X,Y):- catch(ensure_space_py(X,Y),_,fail),!. -ensure_space(_N,_V):- fail. - -% =============================== -% Clause Database interface -% =============================== -%debug_metta(Call):- skip(Call). -if_metta_debug(Goal):- getenv('VSPACE_VERBOSE','2'),!,ignore(call(Goal)). -%if_metta_debug(_):-!. -if_metta_debug(Goal):- !,ignore(call(Goal)). -debug_metta(Term):- notrace(if_metta_debug((format('~N; ~@~n',[write_src(Term)])))). -debug_metta(Msg,Term):- notrace(if_metta_debug((format('~N; ~w: ~@~n',[Msg,write_src(Term)])))),!. - -:- multifile(space_type_method/3). -:- dynamic(space_type_method/3). -space_type_method(is_asserted_space,new_space,init_space). -space_type_method(is_asserted_space,clear_space,clear_nb_atoms). -space_type_method(is_asserted_space,add_atom,metta_assertdb_add). -space_type_method(is_asserted_space,remove_atom,metta_assertdb_rem). -space_type_method(is_asserted_space,replace_atom,metta_assertdb_replace). -space_type_method(is_asserted_space,atom_count,metta_assertdb_count). -space_type_method(is_asserted_space,get_atoms,metta_assertdb_get_atoms). -space_type_method(is_asserted_space,atom_iter,metta_assertdb_iter). -%space_type_method(is_asserted_space,query,space_nb_query). - -%:- dynamic(for_metta/2). -%for_metta(_,T):- fb_pred(F,A),functor(T,F,A),call(T). -metta_assertdb_ls(KB):-listing(asserted_metta_atom(KB,_)). -metta_assertdb_add(KB,Atom):- subst_vars(Atom,New), - decl_m_fb_pred(user,asserted_metta_atom,2), - MP = asserted_metta_atom(KB,New), - assert_new(MP). -metta_assertdb_rem(KB,Old):- metta_assertdb_del(KB,Old). -metta_assertdb_del(KB,Atom):- subst_vars(Atom,Old), decl_m_fb_pred(user,asserted_metta_atom,2), MP = asserted_metta_atom(KB,Old), - copy_term(MP,Copy), clause(MP,true,Ref), MP=@= Copy, !, erase(Ref). % ,metta_assertdb('DEL',Old). -metta_assertdb_replace(KB,Old,New):- metta_assertdb_del(KB,Old), metta_assertdb_add(KB,New). -metta_assertdb_count(KB,Count):- - must_det_ll(( - decl_m_fb_pred(user,asserted_metta_atom,2), full_atom_count(SL1), - MP = asserted_metta_atom(KB,_), - predicate_property(MP,number_of_clauses(SL2)), - predicate_property(MP,number_of_rules(SL3)), - %metta_assertdb_ls(KB), - Count is SL1 + SL2 - SL3)),!. -metta_assertdb_count(_KB,0):-!. -%metta_assertdb_count(KB,Count):- writeln(metta_assertdb_count_in(KB,Count)), findall(Atom,for_metta(KB,Atom),AtomsL),length(AtomsL,Count),writeln(metta_assertdb_count_out(KB,Count)). -metta_assertdb_iter(KB,Atoms):- decl_m_fb_pred(user,asserted_metta_atom,2), asserted_metta_atom(KB,Atoms). - - - -metta_iter_bind(KB,Query,Vars,VarNames):- - term_variables(Query,QVars), - align_varnames(VarNames,Vars), - TV = debug_metta(['match',KB,Query,QVars,Vars,VarNames]), -% \+ \+ (numbervars(TV,0,_,[]),print(tv=TV),nl), - ignore(QVars=Vars), -% \+ \+ (numbervars(TV,0,_,[]),print(qv=TV),nl), - \+ \+ (%numbervars(TV,0,_,[]), - writeq(av=TV),nl), - space_query_vars(KB,Query,TF),TF\=='False'. - - -% Query from hyperon.base.GroundingSpace -space_query_vars(KB,Query,Vars):- is_asserted_space(KB),!, - decl_m_fb_pred(user,asserted_metta_atom,2), - call_metta(KB,Query,Vars), - debug_metta('RES',space_query_vars(KB,Query,Vars)). - - -metta_assertdb_get_atoms(KB,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Atom,asserted_metta_atom(KB,Atom),AtomsL). -/* - -%metta_assertdb_iter_bind(KB,Query,Template,AtomsL):- decl_m_fb_pred(user,asserted_metta_atom,2), findall(Template,asserted_metta_atom(KB,Query),AtomsL). -metta_assertdb_iter_bind(KB,Query,Vars):- - ignore(term_variables(Query,Vars)), - print(metta_assertdb(['match',KB,Query,Vars])),nl, - decl_m_fb_pred(user,asserted_metta_atom,2), (asserted_metta_atom(KB,Query)*->true;call_metta_assertdb(KB,Query,Vars)), - metta_assertdb('RES',metta_assertdb_iter_bind(KB,Query,Vars)). -%metta_assertdb_iter_bind(KB,Atom,Template):- metta_assertdb_stats, findall(Template,metta_assertdb_iter(KB,Atom),VarList). - -metta_assertdb_iter_bind(KB,Atoms,Vars):- - metta_assertdb_stats, - term_variables(Atoms,AVars), - metta_assertdb_iter(KB,Atoms), ignore(AVars = Vars). -*/ - - -align_varnames(VarNames,Vars):- - list_to_set(VarNames,NameSet), - merge_named_vars(NameSet,VarNames,Vars). - -merge_named_vars([],_VarNames,_Vars):-!. -merge_named_vars([N|NameSet],VarNames,Vars):- - merge_named(N,_V,VarNames,Vars), - merge_named_vars(NameSet,VarNames,Vars). -%merge_named_vars(_,_,_). - -merge_named(_,_,[],[]):-!. -merge_named(N,V,[N|VarNames],[V|Vars]):- - merge_named(N,V,VarNames,Vars). - - -call_metta( KB,Query,_Vars):- metta_atom(KB,Query). -call_metta(_KB,Query,_Vars):- metta_to_pyswip([],Query,Call),!, - print(user:Call),nl,user:call(Call). - -metta_to_pyswip(_PS,Query,Call):- var(Query),!,Call=Query. -metta_to_pyswip(_PS,Query,Call):- \+ compound(Query),!,Call=Query,!. -metta_to_pyswip(PS,Query,Call):- is_list(Query),Query=[Q|Uery],!,cmpd_to_pyswip(PS,Q,Uery,Call). -metta_to_pyswip(PS,Query,Call):- Query=..[Q|Uery], cmpd_to_pyswip(PS,Q,Uery,Call). - -cmpd_to_pyswip(PS,Q,Uery,Call):- atom(Q),maplist(metta_to_pyswip([Q|PS]),Uery,Cery),Call=..[Q|Cery]. -cmpd_to_pyswip(PS,"and",Uery,Call):- maplist(metta_to_pyswip(PS),Uery,Args),list_to_conjuncts(Args,Call). - - -'show-metta-def'(Pred, []):- - 'get-metta-src'(Pred,[_|SrcL]), - maplist(write_src_nl,SrcL). - -write_src_nl(Src):- format('~N'),write_src(Src),format('~N'). - -%'get-metta-src'(Pred,[Len|SrcL]):- findall(['AtomDef',Src],'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). -'get-metta-src'(Pred,[Len|SrcL]):- findall(Src,'get-metta-src1'(Pred,Src),SrcL), length(SrcL,Len). -'get-metta-src1'(Pred,Src):- - current_self(Space), - metta_atom(Space,[F,A|List]), - once((sub_var(Pred,A)->Src = [F,A|List];sub_var(Pred,F)->Src = [F,A|List])). - -% is a quine -'AtomDef'(X,['AtomDef',X]). - -% =============================== -% PRINTERS -% =============================== - - -pp_sax(V) :- is_final_write(V),!. -pp_sax(S) :- \+ allow_concepts,!, write_src(S). -pp_sax(S) :- is_englishy(S),!,print_concept("StringValue",S). -pp_sax(S) :- symbol_length(S,1),symbol_string(S,SS),!,print_concept("StringValue",SS). -pp_sax(S) :- is_an_arg_type(S,T),!,print_concept("TypeNode",T). -pp_sax(S) :- has_type(S,T),!,format('(~wValueNode "~w")',[T,S]). -pp_sax(S) :- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,(Aft>0->format('(~wValueNode "~w")',[Type,S]);format('(TypeNode "~w")',[Type])). -pp_sax(S) :- print_concept("ConceptNode",S). - -print_concept( CType,V):- allow_concepts, !, write("("),write(CType),write(" "),ignore(with_concepts(false,write_src(V))),write(")"). -print_concept(_CType,V):- ignore(write_src(V)). -write_val(V):- number(V),!, write_src(V). -write_val(V):- compound(V),!, write_src(V). -write_val(V):- write('"'),write(V),write('"'). - -% Base case: atoms are printed as-is. -pp_as(V) :- \+ \+ pp_sex(V),flush_output. -pp_sex(V) :- is_final_write(V),!. -pp_sex('!'(V)) :- write('!'),!,pp_sex(V). -pp_sex('exec'(V)) :- write('!'),!,pp_sex(V). -%pp_sex('') :- format('(EmptyNode null)',[]). -pp_sex('') :- !, format('""',[]). -pp_sex([]):- !, write('()'). -pp_sex('='(N,V)):- allow_concepts, !, format("~N;; ~w == ~n",[N]),!,pp_sex(V). -pp_sex(V) :- (number(V) ; is_dict(V)), !, print_concept('ValueAtom',V). -%pp_sex(V) :- (symbol(V),symbol_number(V,N)), !, print_concept('ValueAtom',N). -pp_sex(S) :- symbol(S), always_dash_functor(S,D), pp_sax(D),!. -pp_sex(S) :- string(S),!, print_concept('StringValue',S). -% Lists are printed with parentheses. -pp_sex(V) :- \+ compound(V), !, format('~p',[V]). -pp_sex(V) :- V = '$VAR'(_), !, format('$~p',[V]). -pp_sex('!'(V)) :- write('!'),!,pp_sex(V). -pp_sex(listOf(S,_)) :- !,pp_sex(listOf(S)). -pp_sex(listOf(S)) :- !,format('(ListValue ~@)',[pp_sex(S)]). - -pp_sex([H|T]) :- \+ no_src_indents, atom(H),member(H,['If','cond','let','let*']),!, - with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T])))). - -pp_sex([H|T]) :- is_list(T), length(T,Args),Args =< 2, fail, - wots(SS,((with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')')))))), - ((atom_length(SS,Len),Len < 20) ->write(SS); - with_indents(true,w_proper_indent(2,w_in_p(pp_sexi([H|T]))))),!. -/* - -pp_sex([H|T]) :- is_list(T),atom(H),upcase_atom(H,U),downcase_atom(H,U),!, - with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression(T), write(')'))). - -%pp_sex([H,B,C|T]) :- T==[],!, -% with_indents(false,(write('('), pp_sex(H), print_list_as_sexpression([B,C]), write(')'))). -*/ -pp_sex(V) :- no_src_indents,!,pp_sexi(V). - -pp_sex(V) :- w_proper_indent(2,w_in_p(pp_sexi(V))). - -:- nb_setval(src_indents,'True'). -no_src_indents:- nb_setval(src_indents,'False'). - %option_else(src_indents,TF,true),!,TF=='False'. - -pp_sexi_l([H,S]):-H=='[...]', write('['),print_items_list(S),write(' ]'). -pp_sexi_l([H,S]):-H=='{...}', write('{'),print_items_list(S),write(' }'). -pp_sexi_l([H|T]):-write('('), pp_sex(H), print_list_as_sexpression(T), write(')'). - -print_items_list(X):- is_list(X),!,print_list_as_sexpression(X). -print_items_list(X):- write_src(X). - -pp_sexi(V) :- is_final_write(V),!. -pp_sexi([H|T]) :- is_list(T),!,pp_sexi_l([H|T]). -% Compound terms. -%pp_sex(Term) :- compound(Term), Term =.. [Functor|Args], write('('),format('(~w ',[Functor]), write_args_as_sexpression(Args), write(')'). -%pp_sex(Term) :- Term =.. ['=',H|Args], length(Args,L),L>2, write('(= '), pp_sex(H), write('\n\t\t'), maplist(pp_sex(2),Args). -pp_sexi(Term) :- Term==[],!,write('()'). -pp_sexi(Term) :- compound_name_arity(Term,F,0),!,pp_sexi([F]). -pp_sexi(Term) :- Term =.. [Functor|Args], always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. -pp_sexi(Term) :- allow_concepts, Term =.. [Functor|Args], format('(EvaluationLink (PredicateNode "~w") (ListLink ',[Functor]), write_args_as_sexpression(Args), write('))'),!. -pp_sexi(Term) :- Term =.. [Functor|Args], - always_dash_functor(Functor,DFunctor), format('(~w ',[DFunctor]), write_args_as_sexpression(Args), write(')'),!. - -pp_sex(2,Result):- write('\t\t'),pp_sex(Result). - - -current_column(Column) :- current_output(Stream), line_position(Stream, Column),!. -current_column(Column) :- stream_property(current_output, position(Position)), stream_position_data(column, Position, Column). -min_indent(Sz):- current_column(Col),Col>Sz,nl,indent_len(Sz). -min_indent(Sz):- current_column(Col),Need is Sz-Col,indent_len(Need),!. -min_indent(Sz):- nl, indent_len(Sz). -indent_len(Need):- forall(between(1,Need,_),write(' ')). - -w_proper_indent(N,G):- - flag(w_in_p,X,X), %(X==0->nl;true), - XX is (X*2)+N,setup_call_cleanup(min_indent(XX),G,true). -w_in_p(G):- setup_call_cleanup(flag(w_in_p,X,X+1),G,flag(w_in_p,_,X)). - - -always_dash_functor(A,B):- once(dash_functor(A,B)),A\=@=B,!. -always_dash_functor(A,A). - -dash_functor(A,C):- \+ symbol(A),!,C=A. -dash_functor(A,C):- fail, p2m(A,B),A\==B,!,always_dash_functor(B,C). -dash_functor(Functor,DFunctor):- - symbol(Functor), atomic_list_concat(L,'-',Functor), L\=[_],maplist(always_dash_functor,L,LL), - atomic_list_concat(LL,'-',DFunctor). -dash_functor(Functor,DFunctor):- fail, - symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), - atomic_list_concat(LL,'-',DFunctor). -dash_functor(Functor,DFunctor):- - symbol(Functor), atomic_list_concat(L,'_',Functor), L\=[_],maplist(always_dash_functor,L,LL), - atomic_list_concat(LL,'_',DFunctor). - -sort_on(C,R,A,B):- (A==B-> R= (=) ; must_det_ll((call(C,A,AA),call(C,B,BB),!,compare(R,AA+A,BB+B)))),!. -tokens(X,VL):- unaccent_atom(X,A),!, findall(E,(is_tokenizer(T),call(T,A,E)),L),predsort(sort_on(length_fw_len),L,S),last(S,VL). - -length_fw_len([W|List],L+WL):- length(List,L),atom_length(W,WL). - -print_token_args:- make, - fb_arg(X),tokens(X,A0), - exclude(is_dash,A0,A),tterm(A,AT),writeq(X),write(' '),writeq(AT),write(' '),write_src(A),nl,fail. -is_dash('_'). -is_dash('-'). -tterm([A],A):-!. -tterm([A,':',B|M],BA):- atom(A),!,BA=..[A,B|M]. -tterm([A,B|M],BA):- atom(B),!,BA=..[B,A|M]. -tterm([A|B],BA):- atom(A),!,BA=..[B|A]. -tterm(A,A). - -is_tokenizer(into_list). -is_tokenizer(to_case_break_atoms). -is_tokenizer(atom_to_stem_list). -is_tokenizer(tokenize_atom). -%is_tokenizer(double_metaphone). - - - -is_an_arg_type(S,T):- flybase_identifier(S,T),!. -has_type(S,Type):- sub_atom(S,0,4,Aft,FB),flybase_identifier(FB,Type),!,Aft>0. - -% Print arguments of a compound term. -write_args_as_sexpression([]). -write_args_as_sexpression([H|T]) :- write(' '), pp_sex(H), write_args_as_sexpression(T). - -% Print the rest of the list. -print_list_as_sexpression([]). -%print_list_as_sexpression([H]):- w_proper_indent(pp_sex(H)),!. -print_list_as_sexpression([H|T]):- write(' '), pp_sex(H), print_list_as_sexpression(T). - -call_sexpr(S):- writeln(call=S). -%call_sexpr(Space,Expr,Result):- - -:- dynamic(fb_pred/2). - -%full_atom_count(SL):- flag(total_loaded_atoms,SL,SL),SL>1,!. -full_atom_count(SL):- findall(NC,(fb_pred_nr(F,A),metta_stats(F,A,NC)),Each), sumlist(Each,SL). - -fb_pred_nr(F,A):- dcall0000000000(no_repeats((F=A), fb_pred(F,A))). - -heartbeat :- - % Get the current time and the last printed time - get_time(CurrentTime), - % Check if the global variable is set - ( nb_current(last_printed_time, _) - -> true - ; nb_setval(last_printed_time, CurrentTime) - ), - - nb_getval(last_printed_time, LastPrintedTime), - - % Calculate the difference - Diff is CurrentTime - LastPrintedTime, - - % If the difference is greater than or equal to 60 seconds (1 minute) - ( Diff >= 60 - -> % Print the heartbeat message and update the last printed time - metta_stats - ; % Otherwise, do nothing - true - ). - -metta_stats:- gc_now, - writeln('\n\n\n\n\n\n;~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), - writeln(';~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~'), - full_atom_count(SL), - format("~N~n; Total\t\tAtoms (Atomspace size): ~`.t ~D~108|~n",[SL]), - get_time(CurrentTime), nb_setval(last_printed_time, CurrentTime), - post_statistic(memory,Mem), - post_statistic(atom_space,AS), - post_statistic(cputime,TotalSeconds), - post_statistic(atoms,Concepts), - flag(assert_new,CTs,CTs), - post_statistic(stack,StackMem), - - - PM is Mem + StackMem, - RM is Mem-AS, - PA is RM//(SL+1), - APS is 60*floor(SL/(TotalSeconds+1)), - ACS is AS//(Concepts+1), - - pl_stats('SymbolAtoms',Concepts), - pl_stats('Random samples',CTs), - skip((pl_stats('Bytes Per Atom (Average)',PA), pl_stats('Bytes Per ConceptNode (Average)',ACS))), - skip((pl_stats('Relational Memory',RM), pl_stats('ConceptNode Memory',AS))), - %pl_stats('Queryspace Memory',StackMem), - %CPU is CPUTime-57600, - format_time(TotalSeconds, Formatted), - skip((pl_stats('Atoms per minute',APS))), - pl_stats('Total Memory Used',PM), - pl_stats('Runtime (days:hh:mm:ss)',Formatted), - nl,nl,!. - -metta_stats(F):- for_all(fb_pred_nr(F,A),metta_stats(F,A)). - -metta_stats(F,A):- forall(metta_stats(F,A,NC), pl_stats(F/A,NC)). -metta_stats(F,A,NC):- functor(P,F,A),(predicate_property(P,number_of_clauses(NC))->true;NC=0). -pl_stats(Stat):- statistics(Stat,Value),pl_stats(Stat,Value). -pl_stats(Stat,[Value|_]):- nonvar(Value),!, pl_stats(Stat,Value). -pl_stats(Stat,Value):- format("~N;\t\t~@: ~`.t ~@~100|",[format_value(Stat),format_value(Value)]),!. - - -% AsPred to print the formatted result. -format_value(Value) :- float(Value),!,format("~2f",[Value]),!. -format_value(Bytes) :- integer(Bytes),format_bytes(Bytes, Formatted), write(Formatted). -format_value(Term) :- format("~w",[Term]). -% Base case: If the number is 1G or more, show it in gigabytes (G). -format_bytes(Bytes, Formatted) :- Bytes >= 1073741824, GB is Bytes / 1073741824, format(string(Formatted), '~2fG', [GB]). -% If the number is less than 1G, show it in megabytes (M). -format_bytes(Bytes, Formatted) :- Bytes >= 104857600, Bytes < 1073741824, !, MB is Bytes / 1048576, D is floor(MB), format(string(Formatted), '~DM', [D]). -% If the number is less than 1K, show it in bytes (B). -format_bytes(Bytes, Formatted) :- format(string(Formatted), '~D', [Bytes]). -% % If the number is less than 1M, show it in kilobytes (K). -%format_bytes(Bytes, Formatted) :- Bytes >= 1024, Bytes < 1048576, !, KB is Bytes / 1024, format(string(Formatted), '~0fK', [KB]). - -% Convert total seconds to days, hours, minutes, seconds, and milliseconds. -format_time(TotalSeconds, Formatted) :- - Seconds is floor(TotalSeconds), - % Get days, remaining seconds - Days is div(Seconds, 86400), - Remain1 is mod(Seconds, 86400)-57600, - format_time(string(Out),'%T',Remain1), - % Format the result - format(string(Formatted), '~w:~w', [Days, Out]). - -% AsPred to print the formatted time. -print_formatted_time(TotalSeconds) :- - format_time(TotalSeconds, Formatted), - writeln(Formatted). - - -metta_final:- - save_pre_statistic(memory), - save_pre_statistic(atoms), - save_pre_statistic(atom_space). -/* -symbol(X):- atom(X). -symbol_number(S,N):- atom_number(S,N). -symbol_string(S,N):- atom_string(S,N). -symbol_chars(S,N):- atom_chars(S,N). -symbol_length(S,N):- atom_length(S,N). -symbol_concat(A,B,C):- atom_concat(A,B,C). -symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). -symbol_contains(T,TT):- atom_contains(T,TT). -*/ - diff --git a/metta_vspace/pyswip_lng/metta_space.pl b/metta_vspace/pyswip_lng/metta_space.pl new file mode 120000 index 00000000..e6b5dcdf --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_space.pl @@ -0,0 +1 @@ +../pyswip/metta_space.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_subst.pl b/metta_vspace/pyswip_lng/metta_subst.pl deleted file mode 100755 index 23d76490..00000000 --- a/metta_vspace/pyswip_lng/metta_subst.pl +++ /dev/null @@ -1,937 +0,0 @@ -%self_subst(X):- var(X),!. -%self_subst(X):- string(X),!. -%self_subst(X):- number(X),!. -%self_subst([]). -self_subst(X):- \+ callable(X),!. -self_subst(X):- self_eval(X),!. -self_subst(X):- is_valid_nb_state(X),!. -self_subst(X):- is_list(X),!,fail. -%self_subst(X):- compound(X),!. -%self_subst(X):- is_ref(X),!,fail. -self_subst(X):- atom(X),!, \+ nb_current(X,_),!. -self_subst('True'). self_subst('False'). self_subst('F'). - -:- style_check(-singleton). - -:- nb_setval(self_space, '&self'). -substs_to(XX,Y):- Y==XX,!. -substs_to(XX,Y):- Y=='True',!, is_True(XX),!. - -%current_self(Space):- nb_current(self_space,Space). -subst_args(Eq,RetType,A,AA):- - current_self(Space), - subst_args(Eq,RetType,11,Space,A,AA). - -%subst_args(Eq,RetType,Depth,_Self,X,_Y):- forall(between(6,Depth,_),write(' ')),writeqln(subst_args(Eq,RetType,X)),fail. - -subst_args(Eq,RetType,Depth,Self,X,Y):- atom(Eq), ( Eq \== ('=')) ,!, - call(Eq,'=',RetType,Depth,Self,X,Y). - - - -%subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- nonvar(Y),X=Y,!. -%subst_args(Eq,RetType,Depth,Self,X,Y):- nonvar(Y),!,subst_args(Eq,RetType,Depth,Self,X,XX),substs_to(XX,Y). -subst_args(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. -subst_args(Eq,RetType,_Dpth,_Slf,[X|T],Y):- T==[], \+ callable(X),!,Y=[X]. - -subst_args(Eq,RetType,Depth,Self,[F|X],Y):- - % (F=='superpose' ; ( option_value(no_repeats,false))), - mnotrace((D1 is Depth-1)),!, - subst_args0(D1,Self,[F|X],Y). - -subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args0(Depth,Self,X,Y). -/* -subst_args(Eq,RetType,Depth,Self,X,Y):- - mnotrace((no_repeats_var(YY), - D1 is Depth-1)), - subst_args0(D1,Self,X,Y), - mnotrace(( \+ (Y\=YY))). -*/ - - - -:- nodebug(metta(eval)). - -/* -debugging_metta(G):-is_debugging((eval))->ignore(G);true. -w_indent(Depth,Goal):- - \+ \+ mnotrace(ignore((( - format('~N'), - setup_call_cleanup(forall(between(Depth,101,_),write(' ')),Goal, format('~N')))))). -indentq(Depth,Term):- - \+ \+ mnotrace(ignore((( - format('~N'), - setup_call_cleanup(forall(between(Depth,101,_),write(' ')),format('~q',[Term]), - format('~N')))))). - - -with_debug(Flag,Goal):- is_debugging(Flag),!, call(Goal). -with_debug(Flag,Goal):- flag(eval_num,_,0), - setup_call_cleanup(set_debug(Flag,true),call(Goal),set_debug(Flag,flase)). - -flag_to_var(Flag,Var):- atom(Flag), \+ atom_concat('trace-on-',_,Flag),!,atom_concat('trace-on-',Flag,Var). -flag_to_var(metta(Flag),Var):- !, nonvar(Flag), flag_to_var(Flag,Var). -flag_to_var(Flag,Var):- Flag=Var. - -set_debug(Flag,Val):- \+ atom(Flag), flag_to_var(Flag,Var), atom(Var),!,set_debug(Var,Val). -set_debug(Flag,true):- !, debug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,true). -set_debug(Flag,false):- nodebug(metta(Flag)),flag_to_var(Flag,Var),set_option_value(Var,false). -if_trace((Flag;true),Goal):- !, notrace(( catch_err(ignore((Goal)),E,fbug(E-->if_trace((Flag;true),Goal))))). -if_trace(Flag,Goal):- notrace((catch_err(ignore((is_debugging(Flag),Goal)),E,fbug(E-->if_trace(Flag,Goal))))). - - -%maybe_efbug(SS,G):- efbug(SS,G)*-> if_trace(eval,fbug(SS=G)) ; fail. -maybe_efbug(_,G):- call(G). -%efbug(P1,G):- call(P1,G). -efbug(_,G):- call(G). - - - -is_debugging(Flag):- var(Flag),!,fail. -is_debugging((A;B)):- !, (is_debugging(A) ; is_debugging(B) ). -is_debugging((A,B)):- !, (is_debugging(A) , is_debugging(B) ). -is_debugging(not(Flag)):- !, \+ is_debugging(Flag). -is_debugging(Flag):- Flag== false,!,fail. -is_debugging(Flag):- Flag== true,!. -is_debugging(Flag):- debugging(metta(Flag),TF),!,TF==true. -is_debugging(Flag):- debugging(Flag,TF),!,TF==true. -is_debugging(Flag):- flag_to_var(Flag,Var), - (option_value(Var,true)->true;(Flag\==Var -> is_debugging(Var))). - -:- nodebug(metta(overflow)). - -*/ - -subst_args0(Depth,_Slf,X,Y):- Depth<1,!,X=Y, (\+ trace_on_overflow-> true; flag(eval_num,_,0),debug(metta(eval))). -subst_args0(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. -subst_args0(Depth,Self,X,Y):- - Depth2 is Depth-1, - subst_args11(Depth,Self,X,M), - (M\=@=X ->subst_args0(Depth2,Self,M,Y);Y=X). - - - -subst_args11(_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. -subst_args11(Depth,Self,X,Y):- \+ debugging(metta(eval)),!, subst_args1(Eq,RetType,Depth,Self,X,Y). -subst_args11(Depth,Self,X,Y):- - -notrace(( - - flag(eval_num,EX,EX+1), - D1 is Depth-1, - DR is 99-D1, - PrintRet = _, - option_else('trace-length',Max,100), - if_t((EX>Max), (set_debug(eval,false),MaxP1 is Max+1, set_debug(overflow,false), - format('; Switched off tracing. For a longer trace: !(pragma! trace-length ~w)',[MaxP1]))), - nop(notrace(no_repeats_var(YY))), - - if_t(DR<10,if_trace((eval),(PrintRet=1, indentq(Depth,'-->'(EX,subst_args(Self,X,'$VAR'('RET')),depth(DR)))))), - Ret=retval(fail))), - - call_cleanup(( - subst_args1(Eq,RetType,D1,Self,X,Y), - mnotrace(( \+ (Y\=YY), nb_setarg(1,Ret,Y)))), - mnotrace(ignore(((Y\=@=X,if_trace(metta(eval),indentq(Depth,'<--'(EX,Ret)))))))), - (Ret\=@=retval(fail)->true;(rtrace(subst_args0(D1,Self,X,Y)),fail)). - - -:- discontiguous subst_args1/6. -:- discontiguous subst_args2/6. - -subst_args1(Eq,RetType,Depth,Self,X,Y):- - var(Eq) -> (!,subst_args1('=',RetType,Depth,Self,X,Y)); - (atom(Eq), ( Eq \== ('=')) ,!, call(Eq,'=',RetType,Depth,Self,X,Y)). - -subst_args1(Eq,RetType,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. - -subst_args1(Eq,RetType,Depth,Self,[V|VI],VVO):- \+ is_list(VI),!, - subst_args(Eq,RetType,Depth,Self,VI,VM), - ( VM\==VI -> subst_args(Eq,RetType,Depth,Self,[V|VM],VVO) ; - (subst_args(Eq,RetType,Depth,Self,V,VV), (V\==VV -> subst_args(Eq,RetType,Depth,Self,[VV|VI],VVO) ; VVO = [V|VI]))). - -subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- \+ is_list(X),!,Y=X. - -subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- var(V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). - -subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],OO):- !, - %(var(A)->true;trace), - ((subst_args(Eq,RetType,Depth,Self,A5,AE), AE=A)), - subst_args(Eq,RetType,Depth,Self,AA,OO). -%subst_args1(Eq,RetType,Depth,Self,['let',A,A5,AA],AAO):- !,subst_args(Eq,RetType,Depth,Self,A5,A),subst_args(Eq,RetType,Depth,Self,AA,AAO). -subst_args1(Eq,RetType,Depth,Self,['let*',[],Body],RetVal):- !, subst_args(Eq,RetType,Depth,Self,Body,RetVal). -subst_args1(Eq,RetType,Depth,Self,['let*',[[Var,Val]|LetRest],Body],RetVal):- !, - subst_args1(Eq,RetType,Depth,Self,['let',Var,Val,['let*',LetRest,Body]],RetVal). - - is_sl_op('>'). is_sl_op('<'). % is_sl_op('>'). - is_sl_op('\\=@='). - -subst_args1(Eq,RetType,Depth,Self,[OP,N1,N2],TF):- is_sl_op(OP), !, - ((subst_args(Eq,RetType,Depth,Self,N1,N1Res),subst_args(Eq,RetType,Depth,Self,N2,N2Res), - ((N1,N2)\=@=(N1Res,N2Res)),subst_args1(Eq,RetType,Depth,Self,[OP,N1Res,N2Res],TF)) - *->true; - subst_selfless([OP,N1,N2],TF)). - - - -subst_args1(Eq,RetType,_Dpth,_Slf,['repl!'],'True'):- !, repl. -subst_args1(Eq,RetType,Depth,Self,['!',Cond],Res):- !, call(subst_args(Eq,RetType,Depth,Self,Cond,Res)). -subst_args1(Eq,RetType,Depth,Self,['rtrace',Cond],Res):- !, rtrace(subst_args(Eq,RetType,Depth,Self,Cond,Res)). -subst_args1(Eq,RetType,Depth,Self,['time',Cond],Res):- !, time(subst_args(Eq,RetType,Depth,Self,Cond,Res)). -subst_args1(Eq,RetType,Depth,Self,['print',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). -% !(println! $1) -subst_args1(Eq,RetType,Depth,Self,['println!',Cond],Res):- !, subst_args(Eq,RetType,Depth,Self,Cond,Res),format('~N'),print(Res),format('~N'). - -subst_args1(Eq,RetType,_Dpth,_Slf,List,Y):- is_list(List),maplist(self_subst,List),List=[H|_], \+ atom(H), !,Y=List. - -subst_args1(Eq,RetType,Depth,Self,['assertTrue', X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'True'],TF). -subst_args1(Eq,RetType,Depth,Self,['assertFalse',X],TF):- !, subst_args(Eq,RetType,Depth,Self,['assertEqual',X,'False'],TF). - -subst_args1(Eq,RetType,Depth,Self,['assertEqual',X0,Y0],RetVal):- !, - subst_vars(X0,X),subst_vars(Y0,Y), - l1t_loonit_assert_source_tf( - ['assertEqual',X0,Y0], - (bagof_subst(Depth,Self,X,XX), - bagof_subst(Depth,Self,Y,YY)), - equal_enough_for_test(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]). - -subst_args1(Eq,RetType,Depth,Self,['assertNotEqual',X0,Y0],RetVal):- !, - subst_vars(X0,X),subst_vars(Y0,Y), - l1t_loonit_assert_source_tf( - ['assertNotEqual',X0,Y0], - (setof_subst(Depth,Self,X,XX), setof_subst(Depth,Self,Y,YY)), - \+ equal_enough(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,not,YY]). - -subst_args1(Eq,RetType,Depth,Self,['assertEqualToResult',X0,Y0],RetVal):- !, - subst_vars(X0,X),subst_vars(Y0,Y), - l1t_loonit_assert_source_tf( - ['assertEqualToResult',X0,Y0], - (bagof_subst(Depth,Self,X,XX), =(Y,YY)), - equal_enough_for_test(XX,YY), TF), - (TF=='True'->return_empty(RetVal);RetVal=[got,XX,expected,YY]),!. - - -l1t_loonit_assert_source_tf(Src,Goal,Check,TF):- - copy_term(Goal,OrigGoal), - l1t_loonit_asserts(Src, time_eval('\n; EVAL TEST\n;',Goal), Check), - as_tf(Check,TF),!, - ignore(( - once((TF='True', is_debugging(pass));(TF='False', is_debugging(fail))), - with_debug((eval),time_eval('Trace',OrigGoal)))). - -l1t_loonit_asserts(Src,Goal,Check):- - loonit_asserts(Src,Goal,Check). - - -/* -sort_result(Res,Res):- \+ compound(Res),!. -sort_result([And|Res1],Res):- is_and(And),!,sort_result(Res1,Res). -sort_result([T,And|Res1],Res):- is_and(And),!,sort_result([T|Res1],Res). -sort_result([H|T],[HH|TT]):- !, sort_result(H,HH),sort_result(T,TT). -sort_result(Res,Res). - -unify_enough(L,L):-!. -unify_enough(L,C):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). -unify_enough(C,L):- is_list(L),into_list_args(C,CC),!,unify_lists(CC,L). -unify_enough(C,L):- \+ compound(C),!,L=C. -unify_enough(L,C):- \+ compound(C),!,L=C. -unify_enough(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,unify_lists(CC,LL). - -unify_lists(C,L):- \+ compound(C),!,L=C. -unify_lists(L,C):- \+ compound(C),!,L=C. -unify_lists([C|CC],[L|LL]):- unify_enough(L,C),!,unify_lists(CC,LL). - -equal_enough(R,V):- is_list(R),is_list(V),sort(R,RR),sort(V,VV),!,equal_enouf(RR,VV),!. -equal_enough(R,V):- copy_term(R,RR),copy_term(V,VV),equal_enouf(R,V),!,R=@=RR,V=@=VV. - -equal_enough_for_test(X,Y):- must_det_ll((subst_vars(X,XX),subst_vars(Y,YY))),!,equal_enough(XX,YY),!. - -equal_enouf(R,V):- R=@=V, !. -equal_enouf(_,V):- V=@='...',!. -equal_enouf(L,C):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). -equal_enouf(C,L):- is_list(L),into_list_args(C,CC),!,equal_enouf_l(CC,L). -%equal_enouf(R,V):- (var(R),var(V)),!, R=V. -equal_enouf(R,V):- (var(R);var(V)),!, R==V. -equal_enouf(R,V):- number(R),number(V),!, RV is abs(R-V), RV < 0.03 . -equal_enouf(R,V):- atom(R),!,atom(V), has_unicode(R),has_unicode(V). -equal_enouf(R,V):- (\+ compound(R) ; \+ compound(V)),!, R==V. -equal_enouf(L,C):- into_list_args(L,LL),into_list_args(C,CC),!,equal_enouf_l(CC,LL). - -equal_enouf_l(C,L):- \+ compound(C),!,L=@=C. -equal_enouf_l(L,C):- \+ compound(C),!,L=@=C. -equal_enouf_l([C|CC],[L|LL]):- !, equal_enouf(L,C),!,equal_enouf_l(CC,LL). - - -has_unicode(A):- atom_codes(A,Cs),member(N,Cs),N>127,!. -set_last_error(_). - -*/ -subst_args1(Eq,RetType,Depth, Self, [OP|ARGS], Template):- - is_space_op(OP), !, - subst_args_as(Depth, Self, [OP|ARGS], Template). - -% Definition of uses_op to validate operations -is_space_op('match'). -is_space_op('get-atoms'). -is_space_op('add-atom'). -is_space_op('remove-atom'). -is_space_op('atom-count'). -is_space_op('atom-replace'). - -subst_args_as(Depth, Self, [OP|ARGS], Template):- !, eval('=',_,Depth, Self, [OP|ARGS], Template). - -subst_args_as(Depth,Self,['match',Other,Goal,Template],Template):- into_space(Self,Other,Space),!, metta_atom_iter_l1t(Eq,Depth,Space,Goal). -subst_args_as(Depth,Self,['match',Other,Goal,Template,Else],Template):- - (subst_args_as(Depth,Self,['match',Other,Goal,Template],Template)*->true;Template=Else). -subst_args_as(Depth,Self,['get-atoms',Other],PredDecl):- !,into_space(Self,Other,Space), metta_atom_iter_l1t(Eq,Depth,Space,PredDecl). -subst_args_as(_Dpth,Self,['add-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,load,PredDecl),TF). -subst_args_as(_Dpth,Self,['remove-atom',Other,PredDecl],TF):- !, into_space(Self,Other,Space), as_tf(do_metta(Space,unload,PredDecl),TF). -subst_args_as(_Dpth,Self,['atom-count',Other],Count):- !, into_space(Self,Other,Space), findall(_,metta_defn(Eq,Other,_,_),L_as),length(L_as,C_as),findall(_,get_metta_atom(Eq,Space,_),L2),length(L2,C2),Count is C_as+C2. -subst_args_as(_Dpth,Self,['atom-replace',Other,Rem,Add],TF):- !, into_space(Self,Other,Space), copy_term(Rem,RCopy), - as_tf((metta_atom_iter_l1t_ref(Space,RCopy,Ref), RCopy=@=Rem,erase(Ref), do_metta(Other,load,Add)),TF). - -subst_args1(Eq,RetType,Depth,Self,X,Res):- - X= [CaseSym|_],CaseSym == 'case', !, eval('=',_,Depth, Self, X,Res). - -% Macro: case -subst_args1_hide(Depth,Self,X,Res):- - X= [CaseSym,A,CL],CaseSym == 'case', !, - into_case_l1t_list(CL,CASES), - findall(Key-Value, - (nth0(Nth,CASES,Case0), - (is_case_l1t(Key,Case0,Value), - if_trace((case),(format('~N'), - writeqln(c(Nth,Key)=Value))))),KVs),!, - ((subst_args(Eq,RetType,Depth,Self,A,AA), if_trace((case),writeqln(switch=AA)), - (select_case_l1t(Depth,Self,AA,KVs,Value)->true;(member(Void -Value,KVs),Void=='%void%'))) - *->true;(member(Void -Value,KVs),Void=='%void%')), - subst_args(Eq,RetType,Depth,Self,Value,Res). - - select_case_l1t(Depth,Self,AA,Cases,Value):- - (best_key_l1t(AA,Cases,Value) -> true ; - (maybe_special_key_l1ts(Depth,Self,Cases,CasES), - (best_key_l1t(AA,CasES,Value) -> true ; - (member(Void -Value,CasES),Void=='%void%')))). - - best_key_l1t(AA,Cases,Value):- - ((member(Match-Value,Cases),unify_enough(AA,Match))->true; - ((member(Match-Value,Cases),AA ==Match)->true; - ((member(Match-Value,Cases),AA=@=Match)->true; - (member(Match-Value,Cases),AA = Match)))). - - %into_case_l1t_list([[C|ASES0]],CASES):- is_list(C),!, into_case_l1t_list([C|ASES0],CASES),!. - into_case_l1t_list(CASES,CASES):- is_list(CASES),!. - is_case_l1t(AA,[AA,Value],Value):-!. - is_case_l1t(AA,[AA|Value],Value). - - maybe_special_key_l1ts(Depth,Self,[K-V|KVI],[AK-V|KVO]):- - subst_args(Eq,RetType,Depth,Self,K,AK), K\=@=AK,!, - maybe_special_key_l1ts(Depth,Self,KVI,KVO). - maybe_special_key_l1ts(Depth,Self,[_|KVI],KVO):- - maybe_special_key_l1ts(Depth,Self,KVI,KVO). - maybe_special_key_l1ts(_Depth,_Self,[],[]). - - -%[collapse,[1,2,3]] -subst_args1(Eq,RetType,Depth,Self,['collapse',List],Res):-!, bagof_subst(Depth,Self,List,Res). -%[superpose,[1,2,3]] -subst_args1(Eq,RetType,Depth,Self,['superpose',List],Res):- !, member(E,List),subst_args(Eq,RetType,Depth,Self,E,Res). - -get_l1t_sa_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_l1t_sa_p2(P3,E,Cmpd,SA). -get_l1t_sa_p2(P3,E,Cmpd,call(P3,N1,Cmpd)):- arg(N1,Cmpd,E). -get_l1t_sa_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_l1t_sa_p1(P3,E,Arg,SA). -subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, - mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), % ST\==Term, - compound(ST), ST = [F,List],F=='superpose',nonvar(List), %maplist(atomic,List), - call(P1,Var))), !, - %max_counting(F,20), - member(Var,List), - subst_args(Eq,RetType,Depth,Self, Term, Res). - -/* - -sub_sterm(Sub,Sub). -sub_sterm(Sub,Term):- sub_sterm1(Sub,Term). -sub_sterm1(_ ,List):- \+ compound(List),!,fail. -sub_sterm1(Sub,List):- is_list(List),!,member(SL,List),sub_sterm(Sub,SL). -sub_sterm1(_ ,[_|_]):-!,fail. -sub_sterm1(Sub,Term):- arg(_,Term,SL),sub_sterm(Sub,SL). -*/ -% ================================================================= -% ================================================================= -% ================================================================= -% NOP/EQUALITU/DO -% ================================================================= -% ================================================================= -% ================================================================ -subst_args1(Eq,RetType,_Depth,_Self,['nop'], _ ):- !, fail. -subst_args1(Eq,RetType,Depth,Self,['nop',Expr], Empty):- !, - ignore(subst_args(Eq,RetType,Depth,Self,Expr,_)), - return_empty([], Empty). - -subst_args1(Eq,RetType,Depth,Self,['do',Expr], Empty):- !, - forall(subst_args(Eq,RetType,Depth,Self,Expr,_),true), - return_empty([],Empty). - -subst_args1(Eq,RetType,_Depth,_Self,['call',S], TF):- !, eval_call(S,TF). - -% ================================================================= -% ================================================================= -% ================================================================= -% if/If -% ================================================================= -% ================================================================= -% ================================================================= - - -subst_args1(Eq,RetType,Depth,Self,PredDecl,Res):- - Do_more_defs = do_more_defs(true), - clause(eval_21(subst_args,RetType,Depth,Self,PredDecl,Res),Body), - Do_more_defs == do_more_defs(true), - (call(Body), nb_setarg(1,Do_more_defs,false), - deterministic(TF), (TF==true -> ! ; true)). - - -subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then,Else],Res):- !, - subst_args(Eq,'Bool',Depth,Self,Cond,TF), - (is_True(TF) - -> subst_args(Eq,RetType,Depth,Self,Then,Res) - ; subst_args(Eq,RetType,Depth,Self,Else,Res)). - -subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then,Else],Res):- !, - subst_args(Eq,'Bool',Depth,Self,Cond,TF), - (is_True(TF) - -> subst_args(Eq,RetType,Depth,Self,Then,Res) - ; subst_args(Eq,RetType,Depth,Self,Else,Res)). - -subst_args1(Eq,RetType,Depth,Self,['If',Cond,Then],Res):- !, - subst_args(Eq,'Bool',Depth,Self,Cond,TF), - (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; - (!, fail,Res = [],!)). - -subst_args1(Eq,RetType,Depth,Self,['if',Cond,Then],Res):- !, - subst_args(Eq,'Bool',Depth,Self,Cond,TF), - (is_True(TF) -> subst_args(Eq,RetType,Depth,Self,Then,Res) ; - (!, fail,Res = [],!)). - - -subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],NothingO):- - 'Nothing'==Nothing,!,do_expander(Eq,RetType,Nothing,NothingO). - - - -subst_args1(Eq,RetType,Depth,Self, Term, Res):- fail, - mnotrace(( get_l1t_sa_p1(setarg,ST,Term,P1), - compound(ST), ST = [F,List],F=='collapse',nonvar(List), %maplist(atomic,List), - call(P1,Var))), !, setof_subst(Depth,Self,List,Var), - subst_args(Eq,RetType,Depth,Self, Term, Res). - - -%max_counting(F,Max):- flag(F,X,X+1), X true; (flag(F,_,10),!,fail). - - -subst_args1(Eq,RetType,_Dpth,_Slf,[_,Nothing],Nothing):- 'Nothing'==Nothing,!. - - - -subst_args1(Eq,RetType,Depth,Self,['colapse'|List], Flat):- !, maplist(subst_args(Eq,RetType,Depth,Self),List,Res),flatten(Res,Flat). -subst_args1(Eq,RetType,_Dpth,_Slf,['car-atom',Atom],CAR):- !, Atom=[CAR|_],!. -subst_args1(Eq,RetType,_Dpth,_Slf,['cdr-atom',Atom],CDR):- !, Atom=[_|CDR],!. - -subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],['Cons', AA, BB]):- no_cons_reduce, !, - subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). - -subst_args1(Eq,RetType,Depth,Self,['Cons', A, B ],[AA|BB]):- \+ no_cons_reduce, !, - subst_args(Eq,RetType,Depth,Self,A,AA), subst_args(Eq,RetType,Depth,Self,B,BB). - - -subst_args1(Eq,RetType,Depth,Self,['change-state!',StateExpr, UpdatedValue], Ret):- !, subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), - subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'change-state!'(Depth,Self,StateMonad, Value, Ret). -subst_args1(Eq,RetType,Depth,Self,['new-state',UpdatedValue],StateMonad):- !, - subst_args(Eq,RetType,Depth,Self,UpdatedValue,Value), 'new-state'(Depth,Self,Value,StateMonad). -subst_args1(Eq,RetType,Depth,Self,['get-state',StateExpr],Value):- !, - subst_args(Eq,RetType,Depth,Self,StateExpr,StateMonad), 'get-state'(StateMonad,Value). - - - -% subst_args1(Eq,RetType,Depth,Self,['get-state',Expr],Value):- !, subst_args(Eq,RetType,Depth,Self,Expr,State), arg(1,State,Value). - - - -% check_type:- option_else(typecheck,TF,'False'), TF=='True'. - -:- dynamic is_registered_state/1. -:- flush_output. -:- setenv('RUST_BACKTRACE',full). - -/* -% Function to check if an value is registered as a state name -:- dynamic(is_registered_state/1). - -is_nb_state(G):- is_valid_nb_state(G) -> true ; - is_registered_state(G),nb_current(G,S),is_valid_nb_state(S). - - -:- multifile(state_type_method/3). -:- dynamic(state_type_method/3). -space_type_method(is_nb_state,new_space,init_state). -space_type_method(is_nb_state,clear_space,clear_nb_values). -space_type_method(is_nb_state,add_atom,add_nb_value). -space_type_method(is_nb_state,remove_atom,'change-state!'). -space_type_method(is_nb_state,replace_atom,replace_nb_value). -space_type_method(is_nb_state,atom_count,value_nb_count). -space_type_method(is_nb_state,get_atoms,'get-state'). -space_type_method(is_nb_state,atom_iter,value_nb_iter). - -state_type_method(is_nb_state,new_state,init_state). -state_type_method(is_nb_state,clear_state,clear_nb_values). -state_type_method(is_nb_state,add_value,add_nb_value). -state_type_method(is_nb_state,remove_value,'change-state!'). -state_type_method(is_nb_state,replace_value,replace_nb_value). -state_type_method(is_nb_state,value_count,value_nb_count). -state_type_method(is_nb_state,'get-state','get-state'). -state_type_method(is_nb_state,value_iter,value_nb_iter). -%state_type_method(is_nb_state,query,state_nb_query). - -% Clear all values from a state -clear_nb_values(StateNameOrInstance) :- - fetch_or_create_state(StateNameOrInstance, State), - nb_setarg(1, State, []). - - - -% Function to confirm if a term represents a state -is_valid_nb_state(State):- compound(State),functor(State,'State',_). - -% Find the original name of a given state -state_original_name(State, Name) :- - is_registered_state(Name), - nb_current(Name, State). - -% Register and initialize a new state -init_state(Name) :- - State = 'State'(_,_), - asserta(is_registered_state(Name)), - nb_setval(Name, State). - -% Change a value in a state -'change-state!'(Depth,Self,StateNameOrInstance, UpdatedValue, Out) :- - fetch_or_create_state(StateNameOrInstance, State), - arg(2, State, Type), - ( (check_type,\+ get_type_l1t(Depth,Self,UpdatedValue,Type)) - -> (Out = ['Error', UpdatedValue, 'BadType']) - ; (nb_setarg(1, State, UpdatedValue), Out = State) ). - -% Fetch all values from a state -'get-state'(StateNameOrInstance, Values) :- - fetch_or_create_state(StateNameOrInstance, State), - arg(1, State, Values). - -'new-state'(Depth,Self,Init,'State'(Init, Type)):- check_type->get_type_l1t(Depth,Self,Init,Type);true. - -'new-state'(Init,'State'(Init, Type)):- check_type->get_type_l1t(10,'&self',Init,Type);true. - -fetch_or_create_state(Name):- fetch_or_create_state(Name,_). -% Fetch an existing state or create a new one - -fetch_or_create_state(State, State) :- is_valid_nb_state(State),!. -fetch_or_create_state(NameOrInstance, State) :- - ( atom(NameOrInstance) - -> (is_registered_state(NameOrInstance) - -> nb_current(NameOrInstance, State) - ; init_state(NameOrInstance), - nb_current(NameOrInstance, State)) - ; is_valid_nb_state(NameOrInstance) - -> State = NameOrInstance - ; writeln('Error: Invalid input.') - ), - is_valid_nb_state(State). - -*/ - -subst_args1(Eq,RetType,Depth,Self,['get-type',Val],Type):- !, get_type_l1t(Depth,Self,Val,Type),ground(Type),Type\==[], Type\==Val,!. - -% mnotrace(G):- once(G). -/* -is_decl_type(ST):- metta_type(_,_,Type),sub_term(T,Type),T=@=ST, \+ nontype(ST). -is_type(Type):- nontype(Type),!,fail. -is_type(Type):- is_decl_type(Type). -is_type(Type):- atom(Type). - -nontype(Type):- var(Type),!. -nontype('->'). -nontype(N):- number(N). - -*/ - -needs_subst(EvalMe):- is_list(EvalMe),!. - - -get_type_l1t(_Dpth,_Slf,Var,'%Undefined%'):- var(Var),!. -get_type_l1t(_Dpth,_Slf,Val,'Number'):- number(Val),!. -get_type_l1t(Depth,Self,Expr,['StateMonad',Type]):- is_valid_nb_state(Expr),'get-state'(Expr,Val),!, - get_type_l1t(Depth,Self,Val,Type). - - -get_type_l1t(Depth,Self,EvalMe,Type):- needs_subst(EvalMe),subst_args(Eq,RetType,Depth,Self,EvalMe,Val), \+ needs_subst(Val),!, - get_type_l1t(Depth,Self,Val,Type). - -get_type_l1t(_Dpth,Self,[Fn|_],Type):- symbol(Fn),metta_type(Self,Fn,List),last_element(List,Type), nonvar(Type), - is_type(Type). -get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,List,LType),last_element(LType,Type), nonvar(Type), - is_type(Type). - -get_type_l1t(Depth,_Slf,Type,Type):- Depth<1,!. -get_type_l1t(_Dpth,Self,List,Type):- is_list(List),metta_type(Self,Type,['->'|List]). -get_type_l1t(Depth,Self,List,Types):- List\==[], is_list(List),Depth2 is Depth-1,maplist(get_type_l1t(Depth2,Self),List,Types). -get_type_l1t(_Dpth,Self,Fn,Type):- symbol(Fn),metta_type(Self,Fn,Type),!. -%get_type_l1t(Depth,Self,Fn,Type):- nonvar(Fn),metta_type(Self,Fn,Type2),Depth2 is Depth-1,get_type_l1t(Depth2,Self,Type2,Type). -%get_type_l1t(Depth,Self,Fn,Type):- Depth>0,nonvar(Fn),metta_type(Self,Type,Fn),!. %,!,last_element(List,Type). - -get_type_l1t(Depth,Self,Expr,Type):-Depth2 is Depth-1, subst_args(Eq,RetType,Depth2,Self,Expr,Val),Expr\=@=Val,get_type_l1t(Depth2,Self,Val,Type). - - -get_type_l1t(_Dpth,_Slf,Val,'String'):- string(Val),!. -get_type_l1t(_Dpth,_Slf,Val,Type):- is_decl_type(Val),Type=Val. -get_type_l1t(_Dpth,_Slf,Val,'Bool'):- (Val=='False';Val=='True'),!. -get_type_l1t(_Dpth,_Slf,Val,'Symbol'):- symbol(Val). -%get_type_l1t(Depth,Self,[T|List],['List',Type]):- Depth2 is Depth-1, is_list(List),get_type_l1t(Depth2,Self,T,Type),!, -% forall((member(Ele,List),nonvar(Ele)),get_type_l1t(Depth2,Self,Ele,Type)),!. -%get_type_l1t(Depth,_Slf,Cmpd,Type):- compound(Cmpd), functor(Cmpd,Type,1),!. -get_type_l1t(_Dpth,_Slf,Cmpd,Type):- \+ ground(Cmpd),!,Type=[]. -get_type_l1t(_Dpth,_Slf,_,'%Undefined%'):- fail. - - -subst_args1(Eq,RetType,Depth,Self,['length',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). -subst_args1(Eq,RetType,Depth,Self,['CountElement',L],Res):- !, subst_args(Eq,RetType,Depth,Self,L,LL), !, (is_list(LL)->length(LL,Res);Res=1). - -/* - -is_feo_f('Cons'). - -is_seo_f('{...}'). -is_seo_f('[...]'). -is_seo_f('{}'). -is_seo_f('[]'). -is_seo_f('StateMonad'). -is_seo_f('State'). -is_seo_f('Event'). -is_seo_f('Concept'). -is_seo_f(N):- number(N),!. - -*/ - -/* -subst_args1(Eq,RetType,Depth,Self,[F,A|Args],Res):- - \+ self_subst(A), - subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A, - subst_args(Eq,RetType,Depth,Self,[F,AA|Args],Res). - - -subst_args1(Eq,RetType,Depth,Self,[F,A1|AArgs],Res):- fail, member(F,['+']), - cwdl(40,(( - append(L,[A|R],AArgs), - \+ self_subst(A), - subst_args(Eq,RetType,Depth,Self,A,AA),AA\==A,!, - append(L,[AA|R],NewArgs), subst_args(Eq,RetType,Depth,Self,[F,A1|NewArgs],Res)))). -*/ - -/* %% - -% !(assertEqualToResult ((inc) 2) (3)) -subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), - metta_atom_iter_l1t(Eq,Depth,Self,['=',F,R]), subst_args(Eq,RetType,Depth,Self,[R|Args],Res). - -subst_args1(Eq,RetType,Depth,Self,[F|Args],Res):- is_list(F), Args\==[], - append(F,Args,FArgs),!,subst_args(Eq,RetType,Depth,Self,FArgs,Res). -*/ -subst_args1(Eq,RetType,_Dpth,Self,['import!',Other,File],RetVal):- into_space(Self,Other,Space),!, include_metta(Space,File),!,return_empty(Space,RetVal). %RetVal=[]. -subst_args1(Eq,RetType,Depth,Self,['bind!',Other,Expr],RetVal):- - into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),nb_setval(Name,Value), return_empty(Value,RetVal). -subst_args1(Eq,RetType,Depth,Self,['pragma!',Other,Expr],RetVal):- - into_name(Self,Other,Name),!,subst_args(Eq,RetType,Depth,Self,Expr,Value),set_option_value(Name,Value), return_empty(Value,RetVal). -subst_args1(Eq,RetType,_Dpth,Self,['transfer!',File],RetVal):- !, include_metta(Self,File), return_empty(Self,RetVal). - - - -%l_l1t_args1(Depth,Self,['nop',Expr],Empty):- !, subst_args(Eq,RetType,Depth,Self,Expr,_), return_empty([],Empty). - -/* -is_True(T):- T\=='False',T\=='F',T\==[]. - -is_and(S):- \+ atom(S),!,fail. -is_and('#COMMA'). is_and(','). is_and('and'). is_and('And'). -*/ -subst_args1(Eq,RetType,_Dpth,_Slf,[And],'True'):- is_and(And),!. -subst_args1(Eq,RetType,Depth,Self,['and',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True'),subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). -subst_args1(Eq,RetType,Depth,Self,[And,X|Y],TF):- is_and(And),!,subst_args(Eq,RetType,Depth,Self,X,TF1), - is_True(TF1),subst_args1(Eq,RetType,Depth,Self,[And|Y],TF). -%subst_args2(Eq,Depth,Self,[H|T],_):- \+ is_list(T),!,fail. -subst_args1(Eq,RetType,Depth,Self,['or',X,Y],TF):- !, as_tf((subst_args(Eq,RetType,Depth,Self,X,'True');subst_args(Eq,RetType,Depth,Self,Y,'True')),TF). - - - - -subst_args1(Eq,RetType,Depth,Self,['+',N1,N2],N):- number(N1),!, - subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1+N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). -subst_args1(Eq,RetType,Depth,Self,['-',N1,N2],N):- number(N1),!, - subst_args(Eq,RetType,Depth,Self,N2,N2Res), catch_err(N is N1-N2Res,_E,(set_last_error(['Error',N2Res,'Number']),fail)). - -subst_args1(Eq,RetType,Depth,Self,[V|VI],[V|VO]):- nonvar(V),is_metta_data_functor(Eq,V),is_list(VI),!,maplist(subst_args(Eq,RetType,Depth,Self),VI,VO). - -subst_args1(Eq,RetType,Depth,Self,X,Y):- - (subst_args2(Eq,Depth,Self,X,Y)*->true; - (subst_args2_failed(Depth,Self,X,Y)*->true;X=Y)). - - -subst_args2_failed(_Dpth,_Slf,T,TT):- T==[],!,TT=[]. -subst_args2_failed(_Dpth,_Slf,T,TT):- var(T),!,TT=T. -subst_args2_failed(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace([F|LESS]\==Res),!. -%subst_args2_failed(Depth,Self,[V|Nil],[O]):- Nil==[], once(subst_args(Eq,RetType,Depth,Self,V,O)),V\=@=O,!. -subst_args2_failed(Depth,Self,[H|T],[HH|TT]):- !, - subst_args(Eq,RetType,Depth,Self,H,HH), - subst_args2_failed(Depth,Self,T,TT). - -subst_args2_failed(Depth,Self,T,TT):- subst_args(Eq,RetType,Depth,Self,T,TT). - - %subst_args(Eq,RetType,Depth,Self,X,Y):- subst_args1(Eq,RetType,Depth,Self,X,Y)*->true;Y=[]. - -%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. -%subst_args1(Eq,RetType,Depth,_,X,Y):- Depth<3, !, ground(X), (Y=X). -%subst_args1(Eq,RetType,_Dpth,_Slf,X,Y):- self_subst(X),!,Y=X. - -% Kills zero arity functions subst_args1(Eq,RetType,Depth,Self,[X|Nil],[Y]):- Nil ==[],!,subst_args(Eq,RetType,Depth,Self,X,Y). - - -/* -into_values(List,Many):- List==[],!,Many=[]. -into_values([X|List],Many):- List==[],is_list(X),!,Many=X. -into_values(Many,Many). -subst_args2(Eq,_Dpth,_Slf,Name,Value):- atom(Name), nb_current(Name,Value),!. -*/ -% Macro Functions -%subst_args1(Eq,RetType,Depth,_,_,_):- Depth<1,!,fail. -subst_args2(Eq,Depth,_,X,Y):- Depth<3, !, fail, ground(X), (Y=X). -subst_args2(Eq,Depth,Self,[F|PredDecl],Res):- fail, - Depth>1, - mnotrace((sub_sterm1(SSub,PredDecl), ground(SSub),SSub=[_|Sub], is_list(Sub), maplist(atomic,SSub))), - subst_args(Eq,RetType,Depth,Self,SSub,Repl), - mnotrace((SSub\=Repl, subst(PredDecl,SSub,Repl,Temp))), - subst_args(Eq,RetType,Depth,Self,[F|Temp],Res). - - - -% user defined function -subst_args2(Eq,Depth,Self,[H|PredDecl],Res):- mnotrace(is_user_defined_head(Eq,Self,H)),!, - subst_args30(Eq,Depth,Self,[H|PredDecl],Res). - -% function inherited by system -subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args40(Eq,Depth,Self,PredDecl,Res). - -/* -last_element(T,E):- \+ compound(T),!,E=T. -last_element(T,E):- is_list(T),last(T,L),last_element(L,E),!. -last_element(T,E):- compound_name_arguments(T,_,List),last_element(List,E),!. - - - - -%catch_warn(G):- notrace(catch_err(G,E,(fbug(catch_warn(G)-->E),fail))). -%catch_nowarn(G):- notrace(catch_err(G,error(_,_),fail)). - -%as_tf(G,TF):- catch_nowarn((call(G)*->TF='True';TF='False')). -*/ -subst_selfless(['==',X,Y],TF):- as_tf(X=:=Y,TF),!. -subst_selfless(['==',X,Y],TF):- as_tf(X=@=Y,TF),!. -subst_selfless(['=',X,Y],TF):-!,as_tf(X=Y,TF). -subst_selfless(['>',X,Y],TF):-!,as_tf(X>Y,TF). -subst_selfless(['<',X,Y],TF):-!,as_tf(X',X,Y],TF):-!,as_tf(X>=Y,TF). -subst_selfless(['<=',X,Y],TF):-!,as_tf(X= Bool Atom Atom)) -(= (ift True $then) $then) - -; For anything that is green, assert it is Green in &kb22 -!(ift (green $x) - (add-atom &kb22 (Green $x))) - -; Retrieve the inferred Green things: Fritz and Sam. -!(assertEqualToResult - (match &kb22 (Green $x) $x) - (Fritz Sam)) -*/ -:- discontiguous subst_args3/4. -%subst_args2(Eq,Depth,Self,PredDecl,Res):- subst_args3(Depth,Self,PredDecl,Res). - -%subst_args2(Eq,_Dpth,_Slf,L1,Res):- is_list(L1),maplist(self_subst,L1),!,Res=L1. -%subst_args2(Eq,_Depth,_Self,X,X). - -/* -is_user_defined_head(Eq,Other,H):- mnotrace(is_user_defined_head0(Eq,Other,H)). -is_user_defined_head0(Eq,Other,[H|_]):- !, nonvar(H),!, is_user_defined_head_f(Eq,Other,H). -is_user_defined_head0(Eq,Other,H):- callable(H),!,functor(H,F,_), is_user_defined_head_f(Eq,Other,F). -is_user_defined_head0(Eq,Other,H):- is_user_defined_head_f(Eq,Other,H). - -is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,H). -is_user_defined_head_f(Eq,Other,H):- is_user_defined_head_f1(Eq,Other,[H|_]). - -%is_user_defined_head_f1(Eq,Other,H):- metta_type(Other,H,_). -is_user_defined_head_f1(Eq,Other,H):- get_metta_atom(Eq,Other,[H|_]). -is_user_defined_head_f1(Eq,Other,H):- metta_defn(Eq,Other,[H|_],_). -%is_user_defined_head_f(Eq,_,H):- is_metta_builtin(H). - - -is_special_op(F):- \+ atom(F), \+ var(F), !, fail. -is_special_op('case'). -is_special_op(':'). -is_special_op('='). -is_special_op('->'). -is_special_op('let'). -is_special_op('let*'). -is_special_op('if'). -is_special_op('rtrace'). -is_special_op('or'). -is_special_op('and'). -is_special_op('not'). -is_special_op('match'). -is_special_op('call'). -is_special_op('let'). -is_special_op('let*'). -is_special_op('nop'). -is_special_op('assertEqual'). -is_special_op('assertEqualToResult'). - -is_metta_builtin(Special):- is_special_op(Special). -is_metta_builtin('=='). -is_metta_builtin(F):- once(atom(F);var(F)), current_op(_,yfx,F). -is_metta_builtin('println!'). -is_metta_builtin('transfer!'). -is_metta_builtin('collapse'). -is_metta_builtin('superpose'). -is_metta_builtin('+'). -is_metta_builtin('-'). -is_metta_builtin('*'). -is_metta_builtin('/'). -is_metta_builtin('%'). -is_metta_builtin('=='). -is_metta_builtin('<'). -is_metta_builtin('>'). -is_metta_builtin('all'). -is_metta_builtin('import!'). -is_metta_builtin('pragma!'). -*/ - - -subst_args30(Eq,Depth,Self,H,B):- (subst_args34(Depth,Self,H,B)*->true;subst_args37(Eq,Depth,Self,H,B)). - -subst_args34(_Dpth,Self,H,B):- (metta_defn(Eq,Self,H,B);(get_metta_atom(Eq,Self,H),B=H)). - -% Has argument that is headed by the same function -subst_args37(Eq,Depth,Self,[H1|Args],Res):- - mnotrace((append(Left,[[H2|H2Args]|Rest],Args), H2==H1)),!, - subst_args(Eq,RetType,Depth,Self,[H2|H2Args],ArgRes), - mnotrace((ArgRes\==[H2|H2Args], append(Left,[ArgRes|Rest],NewArgs))), - subst_args30(Eq,Depth,Self,[H1|NewArgs],Res). - -subst_args37(Eq,Depth,Self,[[H|Start]|T1],Y):- - mnotrace((is_user_defined_head_f(Eq,Self,H),is_list(Start))), - metta_defn(Eq,Self,[H|Start],Left), - subst_args(Eq,RetType,Depth,Self,[Left|T1],Y). - -% Has subterm to subst -subst_args37(Eq,Depth,Self,[F|PredDecl],Res):- - Depth>1, fail, - quietly(sub_sterm1(SSub,PredDecl)), - mnotrace((ground(SSub),SSub=[_|Sub], is_list(Sub),maplist(atomic,SSub))), - subst_args(Eq,RetType,Depth,Self,SSub,Repl), - mnotrace((SSub\=Repl,subst(PredDecl,SSub,Repl,Temp))), - subst_args30(Eq,Depth,Self,[F|Temp],Res). - -%subst_args37(Eq,Depth,Self,X,Y):- (subst_args38(Eq,Depth,Self,X,Y)*->true;metta_atom_iter_l1t(Eq,Depth,Self,[=,X,Y])). - -subst_args37(Eq,Depth,Self,PredDecl,Res):- fail, - ((term_variables(PredDecl,Vars), - (get_metta_atom(Eq,Self,PredDecl) *-> (Vars ==[]->Res='True';Vars=Res); - (subst_args(Eq,RetType,Depth,Self,PredDecl,Res),ignore(Vars ==[]->Res='True';Vars=Res))))), - PredDecl\=@=Res. - -subst_args38(Eq,_Dpth,Self,[H|_],_):- mnotrace( \+ is_user_defined_head_f(Eq,Self,H) ), !,fail. -subst_args38(Eq,_Dpth,Self,[H|T1],Y):- metta_defn(Eq,Self,[H|T1],Y). -subst_args38(Eq,_Dpth,Self,[H|T1],'True'):- get_metta_atom(Eq,Self,[H|T1]). -subst_args38(Eq,_Dpth,Self,CALL,Y):- fail,append(Left,[Y],CALL),metta_defn(Eq,Self,Left,Y). - - -%subst_args3(Depth,Self,['ift',CR,Then],RO):- fail, !, %fail, % trace, -% metta_defn(Eq,Self,['ift',R,Then],Become),subst_args(Eq,RetType,Depth,Self,CR,R),subst_args(Eq,RetType,Depth,Self,Then,_True),subst_args(Eq,RetType,Depth,Self,Become,RO). - -metta_atom_iter_l1t(Eq,_Dpth,Other,[Equal,H,B]):- Eq == Equal,!, - (metta_defn(Eq,Other,H,B)*->true;(get_metta_atom(Eq,Other,H),B=H)). - -metta_atom_iter_l1t(Eq,Depth,_,_):- Depth<3,!,fail. -metta_atom_iter_l1t(Eq,_Dpth,_Slf,[]):-!. -metta_atom_iter_l1t(Eq,_Dpth,Other,H):- get_metta_atom(Eq,Other,H). -metta_atom_iter_l1t(Eq,Depth,Other,H):- D2 is Depth -1, metta_defn(Eq,Other,H,B),metta_atom_iter_l1t(Eq,D2,Other,B). -metta_atom_iter_l1t(Eq,_Dpth,_Slf,[And]):- is_and(And),!. -metta_atom_iter_l1t(Eq,Depth,Self,[And,X|Y]):- is_and(And),!,D2 is Depth -1, metta_atom_iter_l1t(Eq,D2,Self,X),metta_atom_iter_l1t(Eq,D2,Self,[And|Y]). -/* -metta_atom_iter_l1t2(_,Self,[=,X,Y]):- metta_defn(Eq,Self,X,Y). -metta_atom_iter_l1t2(_Dpth,Other,[Equal,H,B]):- '=' == Equal,!, metta_defn(Eq,Other,H,B). -metta_atom_iter_l1t2(_Dpth,Self,X,Y):- metta_defn(Eq,Self,X,Y). %, Y\=='True'. -metta_atom_iter_l1t2(_Dpth,Self,X,Y):- get_metta_atom(Eq,Self,[=,X,Y]). %, Y\=='True'. - -*/ -metta_atom_iter_l1t_ref(Other,['=',H,B],Ref):-clause(metta_defn(Eq,Other,H,B),true,Ref). -metta_atom_iter_l1t_ref(Other,H,Ref):-clause(get_metta_atom(Eq,Other,H),true,Ref). - -%not_compound(Term):- \+ is_list(Term),!. -%subst_args2(Eq,Depth,Self,Term,Res):- maplist(not_compound,Term),!,subst_args345(Depth,Self,Term,Res). - - -% function inherited by system -subst_args40(Eq,Depth,Self,[F|X],FY):- is_function(F), \+ is_special_op(F), is_list(X), - maplist(subst_args(Eq,RetType,Depth,Self),X,Y),!,subst_args5(Depth,Self,[F|Y],FY). -subst_args40(Eq,Depth,Self,FX,FY):- subst_args5(Depth,Self,FX,FY). - -subst_args5(_Dpth,_Slf,[F|LESS],Res):- once(subst_selfless([F|LESS],Res)),mnotrace(([F|LESS]\==Res)),!. -subst_args5(Depth,Self,[AE|More],TF):- fail, is_system_pred(AE), length(More,Len), - (is_syspred(AE,Len,Pred),catch_warn(as_tf(apply(Pred,More),TF)))*->true;subst_args6(Depth,Self,[AE|More],TF). -subst_args6(_Dpth,_Slf,[AE|More],TF):- fail, is_system_pred(AE),length([AE|More],Len), is_syspred(AE,Len,Pred),append(More,[TF],Args),!,catch_warn(apply(Pred,Args)). - -%subst_args40(Eq,Depth,Self,[X1|[F2|X2]],[Y1|Y2]):- is_function(F2),!,subst_args(Eq,RetType,Depth,Self,[F2|X2],Y2),subst_args(Eq,RetType,Depth,Self,X1,Y1). - - -%cwdl(DL,Goal):- call_with_depth_limit(Goal,DL,R), (R==depth_limit_exceeded->(!,fail);true). -bagof_subst(Depth,Self,X,L):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L). -setof_subst(Depth,Self,X,S):- !,findall(E,subst_args(Eq,RetType,Depth,Self,X,E),L),sort(L,S). -%setof_subst(Depth,Self,X,S):- setof(E,subst_args(Eq,RetType,Depth,Self,X,E),S)*->true;S=[]. - - diff --git a/metta_vspace/pyswip_lng/metta_subst.pl b/metta_vspace/pyswip_lng/metta_subst.pl new file mode 120000 index 00000000..c09b1b07 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_subst.pl @@ -0,0 +1 @@ +../pyswip/metta_subst.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_test_nars_1.pl b/metta_vspace/pyswip_lng/metta_test_nars_1.pl deleted file mode 100755 index e80375a7..00000000 --- a/metta_vspace/pyswip_lng/metta_test_nars_1.pl +++ /dev/null @@ -1,1752 +0,0 @@ -% (track_load_into_file "../../examples/VRUN_tests1.metta") -:-metta_eval(['extend-py!',metta_learner]). - -%;; stdlib extension -metta_type('&self','If',[->,'Bool','Atom','Atom']). - -metta_defn_ES(['If','True',Then],Then). - -metta_defn_ES(['If','False',Then],[]). - -metta_type('&self','If',[->,'Bool','Atom','Atom','Atom']). - -metta_defn_ES( - ['If',Cond,Then,Else], - [if,Cond,Then,Else]). - -metta_defn_ES( - ['TupleConcat',Ev1,Ev2], - [ collapse, - [ superpose, - [ [ superpose, Ev1 ], - [ superpose, Ev2 ]]]]). - -metta_defn_ES( - [max,Num1,Num2], - [ 'If', - [>,Num1,Num2], Num1,Num2]). - -metta_defn_ES( - [min,Num1,Num2], - [ 'If', - [<,Num1,Num2], Num1,Num2]). - -metta_defn_ES( - [abs,X], - [ 'If', - [<,X,0], - [-,0,X], - X]). - -metta_type('&self',sequential,[->,'Expression','%Undefined%']). - -metta_defn_ES([sequential,Num1],[superpose,Num1]). - -metta_type('&self',do,[->,'Expression','%Undefined%']). - -metta_defn_ES([do,Num1],[case,Num1,[]]). - -metta_defn_ES(['TupleCount',[]],0). - -metta_defn_ES(['TupleCount',[1]],1). - -metta_defn_ES( - ['BuildTupleCounts',TOld,C,N], - [ let, - T, - [ collapse, - [ superpose, - [ 1, - [superpose,TOld]]]], - [ superpose, - [ [ 'add-atom', - '&self', - [ =, - ['TupleCount',T], - [+,C,2]]], - [ 'If', - [<,C,N], - [ 'BuildTupleCounts', - T, - [+,C,1], - N]]]]]). - -metta_type('&self','CountElement',[->,'Expression','Number']). - -metta_defn_ES( - ['CountElement',X], - [ case, - X, - [ [ Y,1]]]). - -%;;Build for count up to 100 (takes a few sec but it is worth it if space or generally collapse counts are often needed) -:-metta_eval(['BuildTupleCounts',[1],0,100]). - -metta_defn_ES( - [ 'BuildTupleCounts', - [1], 0,100], - [ let, - A, - [ collapse, - [ superpose, - [ 1, - [ superpose, - [1]]]]], - [ superpose, - [ [ 'add-atom', - '&self', - [ =, - ['TupleCount',A], - [+,0,2]]], - [ 'If', - [<,0,100], - [ 'BuildTupleCounts', - A, - [+,0,1], - 100]]]]]). - -metta_type('&self','CollapseCardinality',[->,'Expression','Number']). - -metta_defn_ES( - ['CollapseCardinality',Expression], - [ 'TupleCount', - [ collapse, - ['CountElement',Expression]]]). - -%;; Truth functions -metta_defn_ES( - ['Truth_c2w',C], - [ /, - C, - [-,1,C]]). - -metta_defn_ES( - ['Truth_w2c',W], - [ /, - W, - [+,W,1]]). - -metta_defn_ES( - [ 'Truth_Deduction', - [F1,C1], - [F2,C2]], - [ [*,F1,F2], - [ *, - [*,F1,F2], - [*,C1,C2]]]). - -metta_defn_ES( - [ 'Truth_Abduction', - [F1,C1], - [F2,C2]], - [ F2, - [ 'Truth_w2c', - [ *, - [*,F1,C1], - C2]]]). - -metta_defn_ES( - ['Truth_Induction',T1,T2], - ['Truth_Abduction',T2,T1]). - -metta_defn_ES( - [ 'Truth_Exemplification', - [F1,C1], - [F2,C2]], - [ 1.0, - [ 'Truth_w2c', - [ *, - [*,F1,F2], - [*,C1,C2]]]]). - -metta_defn_ES( - ['Truth_StructuralDeduction',T], - [ 'Truth_Deduction', - T, - [1.0,0.9]]). - -metta_defn_ES( - [ 'Truth_Negation', - [F,C]], - [ [-,1,F], - C]). - -metta_defn_ES( - ['Truth','StructuralDeductionNegated',T], - [ 'Truth_Negation', - ['Truth_StructuralDeduction',T]]). - -metta_defn_ES( - [ 'Truth_Intersection', - [F1,C1], - [F2,C2]], - [ [ * ,F1,F2], - [ * ,C1,C2]]). - -metta_defn_ES( - ['Truth_StructuralIntersection',T], - [ 'Truth_Intersection', - T, - [1.0,0.9]]). - -metta_defn_ES( - ['Truth_or',A,B], - [ -, - 1, - [ *, - [-,1,A], - [-,1,B]]]). - -metta_defn_ES( - [ 'Truth_Comparison', - [F1,C1], - [F2,C2]], - [ let, - F0, - ['Truth_or',F1,F2], - [ [ 'If', - [==,F0,0.0], - 0.0, - [ /, - [*,F1,F2], - F0]], - [ 'Truth_w2c', - [ *, - F0, - [*,C1,C2]]]]]). - -metta_defn_ES( - [ 'Truth_Analogy', - [F1,C1], - [F2,C2]], - [ [*,F1,F2], - [ *, - [*,C1,C2], - F2]]). - -metta_defn_ES( - [ 'Truth_Resemblance', - [F1,C1], - [F2,C2]], - [ [*,F1,F2], - [ *, - [*,C1,C2], - ['Truth_or',F1,F2]]]). - -metta_defn_ES( - [ 'Truth_Union', - [F1,C1], - [F2,C2]], - [ [ 'Truth_or', F1 , F2 ], - [ * , C1 , C2 ]]). - -metta_defn_ES( - [ 'Truth_Difference', - [F1,C1], - [F2,C2]], - [ [ *, - F1, - [-,1,F2]], - [*,C1,C2]]). - -metta_defn_ES( - [ 'Truth_DecomposePNN', - [F1,C1], - [F2,C2]], - [ let, - Fn, - [ *, - F1, - [-,1,F2]], - [ [-,1,Fn], - [ *, - Fn, - [*,C1,C2]]]]). - -metta_defn_ES( - [ 'Truth_DecomposeNPP', - [F1,C1], - [F2,C2]], - [ let, - F, - [ *, - [-,1,F1], - F2], - [ F, - [ *, - F, - [*,C1,C2]]]]). - -metta_defn_ES( - [ 'Truth_DecomposePNP', - [F1,C1], - [F2,C2]], - [ let, - F, - [ *, - F1, - [-,1,F2]], - [ F, - [ *, - F, - [*,C1,C2]]]]). - -metta_defn_ES( - ['Truth_DecomposePPP',V1,V2], - [ 'Truth_DecomposeNPP', - ['Truth_Negation',V1], - V2]). - -metta_defn_ES( - [ 'Truth_DecomposeNNN', - [F1,C1], - [F2,C2]], - [ let, - Fn, - [ *, - [-,1,F1], - [-,1,F2]], - [ [-,1,Fn], - [ *, - Fn, - [*,C1,C2]]]]). - -metta_defn_ES( - [ 'Truth_Eternalize', - [F,C]], - [ F, - ['Truth_w2c',C]]). - -metta_defn_ES( - [ 'Truth_Revision', - [F1,C1], - [F2,C2]], - [ 'let*', - [ [ W1, - ['Truth_c2w',C1]], - [ W2, - ['Truth_c2w',C2]], - [ W, - [+,W1,W2]], - [ F, - [ /, - [ +, - [*,W1,F1], - [*,W2,F2]], - W]], - [ C, - ['Truth_w2c',W]]], - [ [min,1.0,F], - [ min, - 0.99, - [ max, - [max,C,C1], - C2]]]]). - -metta_defn_ES( - [ 'Truth_Expectation', - [F,C]], - [ +, - [ *, - C, - [-,F,0.5]], - 0.5]). -% ;;NAL-1 -% ;;!Syllogistic rules for Inheritance: -metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[A,-->,D],['Truth_Deduction',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,-->,B],['Truth_Induction',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,-->,A],['Truth_Abduction',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[B,-->,D],E]] , [[D,-->,A],['Truth_Exemplification',C,E]]). -% ;;NAL-2 -% ;;!Rules for Similarity: -metta_defn_ES(['|-',[[A,<->,B],C]] , [[B,<->,A],['Truth_StructuralIntersection',C]]). -metta_defn_ES(['|-',[[A,<->,B],C],[[D,<->,A],E]] , [[D,<->,B],['Truth_Resemblance',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[D,<->,A],['Truth_Comparison',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[D,<->,B],['Truth_Comparison',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,A],E]] , [[D,-->,B],['Truth_Analogy',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,<->,B],E]] , [[A,-->,D],['Truth_Analogy',C,E]]). -% ;;!Dealing with properties and instances: -metta_defn_ES(['|-',[[A,-->,['{',B,'}']],C]] , [[A,<->,['{',B,'}']],['Truth_StructuralIntersection',C]]). -metta_defn_ES(['|-',[[['$OBJ'(claz_bracket_vector,['$S'])],-->,A],B]] , [[['$OBJ'(claz_bracket_vector,['$S'])],<->,A],['Truth_StructuralIntersection',B]]). -metta_defn_ES(['|-',[[['{',A,'}'],-->,B],C],[[D,<->,A],E]] , [[['{',D,'}'],-->,B],['Truth_Analogy',C,E]]). -metta_defn_ES(['|-',[[A,-->,['$OBJ'(claz_bracket_vector,['$M'])]],B],[[_,<->,_],C]] , [[A,-->,['$OBJ'(claz_bracket_vector,['$S'])]],['Truth_Analogy',B,C]]). -metta_defn_ES([=,['|-',[[['{',A,'}'],<->,['{',B,'}']]],[A,<->,B],['Truth_StructuralIntersection',_]]]). -metta_defn_ES([=,['|-',[[['$OBJ'(claz_bracket_vector,[A])],<->,['$OBJ'(claz_bracket_vector,[B])]]],[_,<->,_],['Truth_StructuralIntersection',_]]]). -% ;;NAL-3 -% ;;!Set decomposition: -metta_defn_ES(['|-',[[['{',A,_,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[['{',_,A,'}'],-->,B],C]] , [[['{',A,'}'],-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[A])]],['Truth_StructuralDeduction',A]]). -metta_defn_ES(['|-',[['M',-->,['$OBJ'(claz_bracket_vector,[A,B])]],A]] , [['M',-->,['$OBJ'(claz_bracket_vector,[B])]],['Truth_StructuralDeduction',A]]). -% ;;!Extensional and intensional intersection decomposition: -metta_defn_ES(['|-',[[[A,'|',_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[A,-->,[B,&,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[[_,'|',A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[A,-->,[_,&,B]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[[A,~,_],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[A,-->,[B,-,_]],C]] , [[A,-->,B],['Truth_StructuralDeduction',C]]). -metta_defn_ES(['|-',[[[_,~,A],-->,B],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). -metta_defn_ES(['|-',[[A,-->,[_,-,B]],C]] , [[A,-->,B],['Truth_StructuralDeductionNegated',C]]). -% ;;!Extensional and intensional intersection composition: (sets via reductions). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,'|',D],-->,B],['Truth_Intersection',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,&,D],-->,B],['Truth_Union',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[D,-->,B],E]] , [[[A,~,D],-->,B],['Truth_Difference',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,&,D]],['Truth_Intersection',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,'|',D]],['Truth_Union',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,D],E]] , [[A,-->,[B,-,D]],['Truth_Difference',C,E]]). -% ;;!Extensional and intensional intersection decomposition: -metta_defn_ES(['|-',[[A,-->,B],C],[[[A,'|',D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[[D,'|',A],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNN',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[[A,&,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[[D,&,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNPP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[[A,~,D],-->,B],E]] , [[D,-->,B],['Truth_DecomposePNP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[[D,~,A],-->,B],E]] , [[D,-->,B],['Truth_DecomposeNNN',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,&,D]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,&,B]],E]] , [[A,-->,D],['Truth_DecomposePNN',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,'|',D]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,'|',B]],E]] , [[A,-->,D],['Truth_DecomposeNPP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[B,-,D]],E]] , [[A,-->,D],['Truth_DecomposePNP',C,E]]). -metta_defn_ES(['|-',[[A,-->,B],C],[[A,-->,[D,-,B]],E]] , [[A,-->,D],['Truth_DecomposeNNN',C,E]]). -% ;; NAL-4 -% ;;!Transformation rules between product and image: -metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[A,-->,[C,'/1',B]],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D]] , [[B,-->,[C,'/2',A]],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\1',C],-->,B],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D]] , [[[A,'\\2',B],-->,C],['Truth_StructuralIntersection',D]]). -% ;;other direction of same rules (as these are bi-directional). -metta_defn_ES(['|-',[[A,-->,[B,'/1',C]],D]] , [[[A,*,C],-->,B],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[A,-->,[B,'/2',C]],D]] , [[[C,*,A],-->,B],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[[A,'\\1',B],-->,C],D]] , [[A,-->,[C,*,B]],['Truth_StructuralIntersection',D]]). -metta_defn_ES(['|-',[[[A,'\\2',B],-->,C],D]] , [[A,-->,[B,*,C]],['Truth_StructuralIntersection',D]]). -% ;;!Comparative relations -metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[>>>,_]],['Truth_FrequencyGreater',B,D]]). -metta_defn_ES(['|-',[[[A,*,B],-->,[>>>,C]],D],[[[B,*,E],-->,[>>>,C]],F]] , [[[A,*,E],-->,[>>>,C]],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[['{',A,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],B],[[['{',C,'}'],'|-',>,['$OBJ'(claz_bracket_vector,['$P'])]],D]] , [[[['{',A,'}'],*,['{',C,'}']],-->,[===,_]],['Truth_FrequencyEqual',B,D]]). -metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D],[[[B,*,E],-->,[===,C]],F]] , [[[A,*,E],-->,[===,C]],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,[===,C]],D]] , [[[B,*,A],-->,[===,C]],['Truth_StructuralIntersection',D]]). -% ;;!Optional rules for more efficient reasoning about relation components: -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[E,-->,A],['Truth_Abduction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[E,-->,B],['Truth_Abduction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[E,-->,B],['Truth_Induction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[E,-->,C],['Truth_Induction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,A],F]] , [[[E,*,B],-->,C],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[A,-->,E],F]] , [[[E,*,B],-->,C],['Truth_Induction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,A],F]] , [[[E,*,B],-->,C],['Truth_Analogy',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,-->,B],F]] , [[[A,*,E],-->,C],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[B,-->,E],F]] , [[[A,*,E],-->,C],['Truth_Induction',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[E,<->,B],F]] , [[[A,*,E],-->,C],['Truth_Analogy',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[B,-->,E],F]] , [[A,-->,[E,*,C]],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,B],F]] , [[A,-->,[E,*,C]],['Truth_Abduction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,B],F]] , [[A,-->,[E,*,C]],['Truth_Analogy',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[C,-->,E],F]] , [[A,-->,[B,*,E]],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,-->,C],F]] , [[A,-->,[B,*,E]],['Truth_Abduction',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[E,<->,C],F]] , [[A,-->,[B,*,E]],['Truth_Analogy',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[E,*,B],-->,C],F]] , [[A,<->,E],['Truth_Comparison',D,F]]). -metta_defn_ES(['|-',[[[A,*,B],-->,C],D],[[[A,*,E],-->,C],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[E,*,C]],F]] , [[B,<->,E],['Truth_Comparison',D,F]]). -metta_defn_ES(['|-',[[A,-->,[B,*,C]],D],[[A,-->,[B,*,E]],F]] , [[C,<->,E],['Truth_Comparison',D,F]]). -% ;;NAL-5 -% ;;!Negation conjunction and disjunction decomposition: -metta_defn_ES(['|-',[[!,A],B]],[A,['Truth_Negation',B]]). -metta_defn_ES(['|-',[[A,&&,_],B]],[A,['Truth_StructuralDeduction',B]]). -metta_defn_ES(['|-',[[_,&&,A],B]],[A,['Truth_StructuralDeduction',B]]). -metta_defn_ES(['|-',[[A,&&,B],C]] , [[B,&&,A],['Truth_StructuralIntersection',C]]). -metta_defn_ES(['|-',[A,B],[[A,&&,C],D]],[C,['Truth_DecomposePNN',B,D]]). -metta_defn_ES(['|-',[A,B],[[A,'||',C],D]],[C,['Truth_DecomposeNPP',B,D]]). -metta_defn_ES(['|-',[A,B],[[[!,A],&&,C],D]],[C,['Truth_DecomposeNNN',B,D]]). -metta_defn_ES(['|-',[A,B],[[[!,A],'||',C],D]],[C,['Truth_DecomposePPP',B,D]]). -% ;;!Syllogistic rules for Implication: -metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[A,==>,D],['Truth_Deduction',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,==>,B],['Truth_Induction',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,==>,A],['Truth_Abduction',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,D],E]] , [[D,==>,A],['Truth_Exemplification',C,E]]). -% ;;!Conditional composition for conjunction and disjunction: -metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,&&,D],==>,B],['Truth_Union',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[[A,'||',D],==>,B],['Truth_Intersection',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,&&,D]],['Truth_Intersection',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[A,==>,[B,'||',D]],['Truth_Union',C,E]]). -% ;;!Multi-conditional inference: -metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[A,==>,C],E]],[B,['Truth_Abduction',D,E]]). -metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[E,==>,B],F]] , [[[A,&&,E],==>,C],['Truth_Deduction',D,F]]). -metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[[A,&&,E],==>,C],F]] , [[E,==>,B],['Truth_Abduction',D,F]]). -metta_defn_ES(['|-',[[[A,&&,B],==>,C],D],[[B,==>,E],F]] , [[[A,&&,E],==>,C],['Truth_Induction',D,F]]). -% ;;!Rules for equivalence: -metta_defn_ES(['|-',[[A,<=>,B],C]] , [[B,<=>,A],['Truth_StructuralIntersection',C]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[B,==>,A],D]] , [[A,<=>,B],['Truth_Intersection',C,D]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[D,==>,B],E]] , [[D,<=>,A],['Truth_Comparison',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[A,==>,D],E]] , [[D,<=>,B],['Truth_Comparison',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,A],E]] , [[D,==>,B],['Truth_Analogy',C,E]]). -metta_defn_ES(['|-',[[A,==>,B],C],[[D,<=>,B],E]] , [[A,==>,D],['Truth_Analogy',C,E]]). -metta_defn_ES(['|-',[[A,<=>,B],C],[[D,<=>,A],E]] , [[D,<=>,B],['Truth_Resemblance',C,E]]). -% ;;!Higher-order decomposition -metta_defn_ES(['|-',[A,B],[[A,==>,C],D]],[C,['Truth_Deduction',B,D]]). -metta_defn_ES(['|-',[A,B],[[[A,&&,C],==>,D],E]] , [[C,==>,D],['Truth_Deduction',B,E]]). -metta_defn_ES(['|-',[A,B],[[C,==>,A],D]],[C,['Truth_Abduction',B,D]]). -metta_defn_ES(['|-',[A,B],[[A,<=>,C],D]],[C,['Truth_Analogy',B,D]]). -% ;;NAL term reductions -% ;;!Extensional intersection, union, conjunction reductions: -metta_defn_ES([A,&,A],A). -metta_defn_ES([A,'|',A],A). -metta_defn_ES([A,&&,A],A). -metta_defn_ES([A,'||',A],A). -% ;;!Extensional set reductions: -metta_defn_ES([['{',A,'}'],'|',['{',B,'}']],['{',A,B,'}']). -metta_defn_ES([['{',A,B,'}'],'|',['{',C,'}']],['{',[A|B],C,'}']). -metta_defn_ES([['{',A,'}'],'|',['{',B,C,'}']],['{',A,[B|C],'}']). -% ;;!Intensional set reductions: -metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B])]],['$OBJ'(claz_bracket_vector,[A,B])]). -metta_defn_ES([['$OBJ'(claz_bracket_vector,[A,B])],&,['$OBJ'(claz_bracket_vector,[C])]],['$OBJ'(claz_bracket_vector,[[A|B],C])]). -metta_defn_ES([['$OBJ'(claz_bracket_vector,[A])],&,['$OBJ'(claz_bracket_vector,[B,C])]],['$OBJ'(claz_bracket_vector,[A,[B|C]])]). -% ;;!Reduction for set element copula: -metta_defn_ES(['{',[A|B],'}'],['{',A,B,'}']). -metta_defn_ES(['$OBJ'(claz_bracket_vector,[[A|B]])],['$OBJ'(claz_bracket_vector,[A,B])]). - -%;params -metta_defn_ES(['BeliefEventsMax'],10). - -metta_defn_ES(['GoalEventsMax'],10). - -%;spaces -:-metta_eval(['bind!','&belief_events',['new-space']]). - -:-metta_eval(['bind!','&goal_events',['new-space']]). - -%;states -:-metta_eval(['bind!','¤tTime',['new-state',1]]). - -:-metta_eval(['bind!','&evidentialBase',['new-state',1]]). - -metta_defn_ES( - [increment,Atom], - [ 'change-state!', - Atom, - [ +, - 1, - ['get-state',Atom]]]). - -metta_defn_ES( - ['UpdateReasonerState'], - [ [ increment , '¤tTime' ], - [ increment ,'&evidentialBase']]). - -metta_defn_ES( - ['GetReasonerState'], - [ ['get-state','¤tTime'], - [ [ 'get-state' ,'&evidentialBase']]]). - -%;priority of events -metta_defn_ES( - [ 'EventPriorityNow', - [T,P], - T], - [ *, - P, - [ /, - 1, - [ +, - 1, - [-,T,T]]]]). - -%;retrieve the best candidate (allows to use tuples / collapse results / spaces as a PQ) -:-metta_eval(['bind!','&tempbest',['new-state',[]]]). - -:-metta_eval(['bind!','&tempbestscore',['new-state',0]]). - -metta_defn_ES( - ['BestCandidate',Tuple,EvaluateCandidateFunction,T], - [ sequential, - [ [ do, - ['change-state!','&tempbestscore',0]], - [ do, - ['change-state!','&tempbest',[]]], - [ do, - [ 'let*', - [ [ X, - [superpose,Tuple]], - [ Fx, - [EvaluateCandidateFunction,X,T]]], - [ superpose, - [ [ 'If', - [ >, - Fx, - ['get-state','&tempbestscore']], - [ sequential, - [ [ 'change-state!' , '&tempbest' , X ], - [ 'change-state!' ,'&tempbestscore', Fx ]]]]]]]], - ['get-state','&tempbest']]]). - -%;functions to select highest-priority events in belief and goal PQ -metta_defn_ES( - [ 'PriorityOf', - [ 'Event', - Sentence, - [OccT,Ev,Prio]], - T], - ['EventPriorityNow',Prio,T]). - -metta_defn_ES( - ['SelectHighestPriorityEvent',Collection,T], - [ 'BestCandidate', - [ collapse, - ['get-atoms',Collection]], 'PriorityOf',T]). - -%;a belief event to process, which demands adding it to the PQ and updating its concept -metta_defn_ES( - ['ProcessBeliefEvent',Ev,T], - [ sequential, - [ [ 'add-atom' ,'&belief_events', Ev ], - [ 'UpdateConcept' , Ev , T ]]]). - -%;bound the size of the attentional focus for tasks / events -metta_defn_ES( - [ 'BoundEvents', Collection,Threshold, - Increment, TargetAmount, T], - [ sequential, - [ [ do, - [ 'let*', - [ [ Ev, - ['get-atoms',Collection]], - [ [ 'Event', - Sentence, - [Time,Evidence,EPrio]], - Ev]], - [ 'If', - [ <, - ['EventPriorityNow',EPrio,T], - Threshold], - ['remove-atom',Collection,Ev]]]], - [ let, - CurrentAmount, - [ 'CollapseCardinality', - ['get-atoms',Collection]], - [ 'If', - [>,CurrentAmount,TargetAmount], - [ 'BoundEvents', - Collection, - [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). - -%;params -metta_defn_ES(['AttentionalFocusConceptsMax'],10). - -%;spaces -:-metta_eval(['bind!','&concepts',['new-space']]). - -:-metta_eval(['bind!','&attentional_focus',['new-space']]). - -%;priority of concepts -metta_defn_ES( - [ 'ConceptPriorityNow', - [T,P], - T], - [ *, - P, - [ /, - 1, - [ +, - 1, - [-,T,T]]]]). - -%;whether evidence was just counted once -:-metta_eval(['bind!','&tempstate',['new-state','False']]). - -:-metta_eval(['bind!','&tempset',['new-space']]). - -metta_defn_ES( - ['StampDisjoint',X], - [ not, - [ sequential, - [ [ do, - ['change-state!','&tempstate','False']], - [ do, - [ case, - ['get-atoms','&tempset'], - [ [ Y, - ['remove-atom','&tempset',Y]]]]], - [ do, - [ let, - Z, - [superpose,X], - [ case, - [match,'&tempset',Z,Z], - [ [ W, - ['change-state!','&tempstate','True']], - [ '%void%', - ['add-atom','&tempset',Z]]]]]], - ['get-state','&tempstate']]]]). - -%;revise if there is no evidential overlap, else use higher-confident candidate -metta_defn_ES( - [ 'RevisionAndChoice', - [ 'Event', - [ Term1, - [F1,C1]], - [eternal,Ev1,EPrio1]], - [ 'Event', - [ Term2, - [F2,C2]], - [eternal,Ev2,EPrio2]]], - [ let, - ConclusionStamp, - ['TupleConcat',Ev1,Ev2], - [ 'If', - ['StampDisjoint',ConclusionStamp], - [ 'Event', - [ Term1, - [ 'Truth_Revision', - [F1,C1], - [F2,C2]]], - [ eternal, - ConclusionStamp, - [0,0.0]]], - [ 'If', - [>,C1,C2], - [ 'Event', - [ Term1, - [F1,C1]], - [ eternal, - Ev1, - [0,0.0]]], - [ 'Event', - [ Term2, - [F2,C2]], - [ eternal, - Ev2, - [0,0.0]]]]]]). - -%;;update beliefs in existing concept with the new event or create new concept to enter the new evidence -metta_defn_ES( - ['UpdateConcept',NewEvent,T], - [ 'let*', - [ [ [ 'Event', - [Term,TV], - [Time,Evidence,EPrio]], - NewEvent], - [ NewEventEternalized, - ['Eternalize',NewEvent]], - [ MatchConcept, - [ 'Concept', Term,Belief, - BeliefEvent,CPrio]]], - [ sequential, - [ [ case, - [match,'&attentional_focus',MatchConcept,MatchConcept], - [ [ MatchConcept, - [ sequential, - [ ['remove-atom','&attentional_focus',MatchConcept], - [ 'let*', - [ [ RevisedBelief, - ['RevisionAndChoice',Belief,NewEventEternalized]], - [ MaxPrio, - [ 'If', - [ >, - ['EventPriorityNow',EPrio,T], - ['ConceptPriorityNow',CPrio,T]], EPrio,CPrio]]], - [ 'add-atom', - '&attentional_focus', - [ 'Concept', Term, RevisedBelief, NewEvent, MaxPrio]]]]]], - [ '%void%', - [ case, - [match,'&concepts',MatchConcept,MatchConcept], - [ [ MatchConcept, - [ sequential, - [ [ 'remove-atom' , '&concepts' , MatchConcept ], - [ 'add-atom' ,'&attentional_focus', MatchConcept ], - [ 'UpdateConcept' , NewEvent , T ]]]], - [ '%void%', - [ 'add-atom', - '&attentional_focus', - [ 'Concept', Term, NewEventEternalized, NewEvent, EPrio]]]]]]]]]]]). - -%;bound the size of attentional focus of concepts -metta_defn_ES( - [ 'BoundAttention', Threshold,Increment, - TargetAmount,T], - [ sequential, - [ [ do, - [ 'let*', - [ [ C, - ['get-atoms','&attentional_focus']], - [ [ 'Concept', - Term, - ['Event',Sentence,Metadata], BeliefEvent,CPrio], - C]], - [ 'If', - [ <, - ['ConceptPriorityNow',CPrio,T], - Threshold], - [ sequential, - [ [ 'remove-atom' ,'&attentional_focus', C ], - [ 'add-atom' , '&concepts' , C ]]]]]], - [ let, - CurrentAmount, - [ 'CollapseCardinality', - ['get-atoms','&attentional_focus']], - [ 'If', - [>,CurrentAmount,TargetAmount], - [ 'BoundAttention', - [+,Threshold,Increment], Increment, TargetAmount, T]]]]]). - -%;get eternal belief of concept -metta_type('&self','EternalQuestion',[->,'Expression',T]). - -metta_defn_ES( - ['EternalQuestion',Term], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', Term,Belief, - BeliefEvent,CPrio], - Belief], - [ [Ev,Ev], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;get event belief of concept -metta_type('&self','EventQuestion',[->,'Expression',T]). - -metta_defn_ES( - ['EventQuestion',Term], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', Term,Belief, - BeliefEvent,CPrio], - BeliefEvent], - [ [Ev,Ev], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [0,[],0.0]]]]]). - -%;;Declarative inference (deriving events and knowledge from observed events) -%;Derived belief event priority -metta_defn_ES( - ['ConclusionPriority',EPrio,CPrio,ConcTV], - [ *, - [*,EPrio,CPrio], - ['Truth_Expectation',ConcTV]]). - -%;making declarative inferences on two events (task from PQ and belief from concept) -metta_defn_ES( - [ 'Conclude', - [ 'Event', - S1, - [Time1,Ev1,Prio1]], - [ 'Event', - S2, - [Time2,Ev2,Prio2]], CPrio,T], - [ let, - ConclusionStamp, - ['TupleConcat',Ev1,Ev2], - [ 'If', - ['StampDisjoint',ConclusionStamp], - [ let, - [ConcTerm,ConcTV], - [ superpose, - [ [ '|-', S1 , S2 ], - [ '|-', S2 , S1 ]]], - [ 'Event', - [ConcTerm,ConcTV], - [ Time1, - ConclusionStamp, - [ T, - [ 'ConclusionPriority', - ['EventPriorityNow',Prio1,T], - ['ConceptPriorityNow',CPrio,T], - ConcTV]]]]]]]). - -%;find a belief for the task to generate conclusions with -metta_defn_ES( - [ 'ReasonWithTask', - [ 'Event', - S1, - [Time1,Ev1,Prio1]], - T], - [ let, - [Belief,CPrio], - [ case, - ['get-atoms','&attentional_focus'], - [ [ [ 'Concept', - Term, - [ 'Event', - SE2, - [TimeE2,EvE2,PrioE2]], - [ 'Event', - S2, - [Time2,Ev2,Prio2]], - CPrio], - [ 'If', - [ and, - [ not, - [==,Time1,eternal]], - [ >, - [ abs, - [-,Time1,Time2]], - 20]], - [ [ 'Event', - SE2, - [TimeE2,EvE2,PrioE2]], - Cprio], - [ [ 'Event', - S2, - [Time2,Ev2,Prio2]], - CPrio]]]]], - [ case, - [ 'Conclude', - [ 'Event', - S1, - [Time1,Ev1,Prio1]], - ['TemporallyAlignedBelief',Time1,Belief], CPrio,T], - [ [ ['Event',Num1,Num2], - [ 'ProcessBeliefEvent', - ['Event',Num1,Num2], - T]]]]]). - -%;select the highest priority belief event from the PQ and use it for reasoning -metta_defn_ES( - ['BeliefCycle',T], - [ do, - [ sequential, - [ [ let, - Ev, - ['SelectHighestPriorityEvent','&belief_events',T], - [ sequential, - [ [ 'remove-atom' ,'&belief_events', Ev ], - [ 'ReasonWithTask', Ev , T ]]]], - ['UpdateReasonerState'], - [ 'BoundEvents', '&belief_events',0.0,0.1, - ['BeliefEventsMax'], - T], - [ 'BoundAttention', 0.0,0.1, - ['AttentionalFocusConceptsMax'], - T]]]]). - -%;;Temporal inference (sequence and implication formation based on FIFO) -%;use the event's evidence to induce a time-independent belief which can be used in the future -metta_defn_ES( - ['Eternalize',Ev], - [ let, - [ 'Event', - [Term,TV], - [Time,Evidence,EPrio]], - Ev, - [ 'If', - [==,Time,eternal], - Ev, - [ 'Event', - [ Term, - ['Truth_Eternalize',TV]], - [ eternal, - Evidence, - [0,0.0]]]]]). - -%;use evidence of an event at a slightly different moment in time -metta_defn_ES( - [ 'Projection', - [ 'Event', - [ Term, - [F,C]], - [Time,Evidence,EPrio]], - TargetTime], - [ 'Event', - [ Term, - [ F, - [ *, - C, - [ min, - 1, - [ /, - 1, - [ abs, - [-,Time,TargetTime]]]]]]], - [TargetTime,Evidence,EPrio]]). - -%;make the belief occurrence time compatible with the task's -metta_defn_ES( - ['TemporallyAlignedBelief',TaskTime,Belief], - [ 'If', - [==,TaskTime,eternal], - ['Eternalize',Belief], - ['Projection',Belief,TaskTime]]). - -%;FIFO max. size bound -:-metta_eval(['bind!','&FIFO',['new-state',[]]]). - -metta_defn_ES(['ListFirstK',C,[]],[]). - -metta_defn_ES( - [ 'ListFirstK', - C, - [LH,LT]], - [ 'If', - [>,C,0], - [ LH, - [ 'ListFirstK', - [-,C,1], - LT]], - []]). - -%;Add event to FIFO -metta_defn_ES( - ['EventToFIFO',Ev], - [ let, - Newlist, - [ 'ListFirstK', - 3, - [ Ev, - ['get-state','&FIFO']]], - ['change-state!','&FIFO',Newlist]]). - -%;Form a sequence of two events -metta_defn_ES( - [ 'TemporalSequence', - Ev1, - [ 'Event', - [Term2,Truth2], - [Time2,Evidence2,EPrio2]]], - [ let, - [ 'Event', - [Term1,Truth1], - [Time1,Evidence1,EPrio1]], - ['Projection',Ev1,Time2], - [ 'Event', - [ [ Term1 , &/ , Term2 ], - [ 'Truth_Intersection', Truth1 , Truth2 ]], - [ Time2, - ['TupleConcat',Evidence1,Evidence2], - [0,0.0]]]]). - -%;Form a temporal implication between two events -metta_defn_ES( - [ 'TemporalImplication', - Ev1, - [ 'Event', - [Term2,Truth2], - [Time2,Evidence2,EPrio2]]], - [ let, - [ 'Event', - [Term1,Truth1], - [Time1,Evidence1,EPrio1]], - ['Projection',Ev1,Time2], - [ 'Event', - [ [ Term1 , =/> , Term2 ], - [ 'Truth_Induction', Truth1 , Truth2 ]], - [ Time2, - ['TupleConcat',Evidence1,Evidence2], - [0,0.0]]]]). - -%;Whether an event's term is an operation -metta_defn_ES( - [ 'IsOp', - [ 'Event', - [Term,Truth], - Metadata]], - [ case, - Term, - [ [ [^,Opname], - 'True'], - [Otherwise,'False']]]). - -%;Find implications in the event FIFO: -%;procedural implications -metta_defn_ES( - [ 'TemporalImplicationInduction', - [ Cons, - [ Op, - [Prec,Tail]]]], - [ 'If', - [ and, - ['IsOp',Op], - [ and, - [ not, - ['IsOp',Cons]], - [ not, - ['IsOp',Prec]]]], - [ let, - PrecOp, - ['TemporalSequence',Prec,Op], - ['TemporalImplication',PrecOp,Cons]]]). - -%;and temporal without operation -metta_defn_ES( - [ 'TemporalImplicationInduction', - [ Cons, - [Prec,Tail]]], - [ 'If', - [ and, - [ not, - ['IsOp',Prec]], - [ not, - ['IsOp',Cons]]], - ['TemporalImplication',Prec,Cons]]). - -%;Add negative evidence for implications which predicted the input unsuccessfully -metta_defn_ES( - ['NegConfirmation',PrecTerm,ObservedCons,T], - [ let, - [ 'Event', - [ [PrecTerm,=/>,PredictedCons], - ImpTV], - ImpMetadata], - [ 'EternalQuestion', - [PrecTerm,=/>,PredictedCons]], - [ 'If', - [ not, - [==,ObservedCons,PredictedCons]], - [ 'UpdateConcept', - [ 'Event', - [ [ PrecTerm , =/> ,PredictedCons], - [ 0.0 , 0.1 ]], - [ T, - [], - [0,0.0]]], - T]]]). - -%;Check if the implication's preconditions are met to anticipate the by the implication predicted outcome -get_metta_atom(Eq, '&self', [ - =, - [ 'Anticipate', - [Pos,[]], - T]]). - -metta_defn_ES( - [ 'Anticipate', - [ Pos, - [Pre,[]]], - T], - [ 'let*', - [ [ [ 'Event', - [PreTerm,PreTV], - PreMetadata], - Pre], - [ [ 'Event', - [PosTerm,PosTV], - PosMetadata], - Pos]], - [ 'If', - [ not, - ['IsOp',Pre]], - ['NegConfirmation',PreTerm,PosTerm,T]]]). - -metta_defn_ES( - [ 'Anticipate', - [ Pos, - [ Op, - [Pre,Trail]]], - T], - [ 'let*', - [ [ [ 'Event', - [PreTerm,PreTV], - PreMetadata], - Pre], - [ [ 'Event', - [OpTerm,OpTV], - OpMetadata], - Op], - [ [ 'Event', - [PosTerm,PosTV], - PosMetadata], - Pos], - [ Sequence, - [Pre,&/,'Pos']]], - [ 'If', - [ and, - ['IsOp',Op], - [ not, - ['IsOp',Pre]]], - [ 'NegConfirmation', - [PreTerm,&/,OpTerm], PosTerm,T]]]). - -%;;Input procedure -metta_defn_ES( - ['AddBeliefEvent',Sentence], - [ 'let*', - [ [ [ T , EvidentialBase ], - [ 'GetReasonerState']], - [ InputEvent, - [ 'Event', - Sentence, - [ T, - EvidentialBase, - [T,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',InputEvent], - [ let, - InducedHypothesis, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',InducedHypothesis,T]], - ['ProcessBeliefEvent',InputEvent,T], - [ 'Anticipate', - ['get-state','&FIFO'], - T], - ['BeliefCycle',T]]]]]). - -%;;Procedural inference (decision making with operation execution and subgoaling) -%;Derived goal event priority -metta_defn_ES( - ['SubgoalPriority',EPrio,ConcTV], - [ *, - EPrio, - ['Truth_Expectation',ConcTV]]). - -%;Expectation of an operation is the truth expectation of its desire value -metta_defn_ES( - [ 'OpExpectation', - [ 'Decision', - [Opname,DVOp], - Subgoal], - T], - ['Truth_Expectation',DVOp]). - -%;Inject executed operation as an event and return its name -metta_defn_ES( - ['Execute',Opname], - [ superpose, - [ [ 'AddBeliefEvent', - [ Opname, - [1.0,0.9]]], - Opname]]). - -%;Add subgoals to the PQ -metta_defn_ES( - ['DeriveSubgoals',Options], - [ do, - [ let, - ['Decision',Op,Subgoal], - [superpose,Options], - ['add-atom','&goal_events',Subgoal]]]). - -%;execute the operation which most likely gets the goal achieved in current contexts, and if contexts are not yet fulfilled, derive them as subgoals -metta_defn_ES( - [ 'BestDecision', - T, - [ 'Event', - [Term,DV], - [GoalTime,GoalEvBase,GoalPrio]], - FIFO], - [ let, - Options, - [ collapse, - [ 'let*', - [ [ [ 'Event', - [ [ [ Prec, - &/, - [^,Op]], =/>,Term], - ImpTV], - [ImpTime,ImpEvBase,ImpPrio]], - [ 'EternalQuestion', - [ [ Prec, - &/, - [^,Op]], =/>,Term]]], - [ DVPrecOp, - ['Truth_Deduction',DV,ImpTV]], - [ [ 'Event', - [PrecTerm,PrecTV], - PrecMetadata], - [ 'Projection', - ['EventQuestion',Prec], - T]], - [ DVOp, - ['Truth_Deduction',PrecTV,DVPrecOp]], - [ DVPrec, - ['Truth_StructuralDeduction',DVPrecOp]], - [ SubgoalStamp, - ['TupleConcat',GoalEvBase,ImpEvBase]]], - [ 'If', - ['StampDisjoint',SubgoalStamp], - [ 'Decision', - [ [^,Op], - DVOp], - [ 'Event', - [ Prec, - ['Truth_StructuralDeduction',DVPrecOp]], - [ T, - SubgoalStamp, - [ T, - [ 'SubgoalPriority', - ['EventPriorityNow',GoalPrio,T], - DVPrec]]]]]]]], - [ let, - [ 'Decision', - [Opname,DVOp], - Subgoal], - ['BestCandidate',Options,'OpExpectation',T], - [ 'If', - [ >, - ['Truth_Expectation',DVOp], - 0.5], - ['Execute',Opname], - ['DeriveSubgoals',Options]]]]). - -%;;select the highest priority goal event from the PQ and use it for decision making -metta_defn_ES( - ['GoalCycle',T], - [ sequential, - [ [ let, - Ev, - ['SelectHighestPriorityEvent','&goal_events',T], - [ sequential, - [ [ do, - ['remove-atom','&goal_events',Ev]], - [ 'BestDecision', T,Ev, - ['get-state','&FIFO']]]]], - [ do, - ['UpdateReasonerState']], - [ do, - [ 'BoundEvents', '&goal_events',0.0,0.1, - ['GoalEventsMax'], - T]]]]). - -%;;Input procedure -metta_defn_ES( - ['AddGoalEvent',Sentence], - [ 'let*', - [ [ [ T , EvidentialBase ], - [ 'GetReasonerState']], - [ InputEvent, - [ 'Event', - Sentence, - [ T, - EvidentialBase, - [T,1.0]]]]], - [ sequential, - [ [ do, - ['add-atom','&goal_events',InputEvent]], - ['GoalCycle',T]]]]). - -:-metta_eval([print,'$STRING'("NARS test!!!!!!!!!!!!!!!!!!")]). - -:-metta_eval(['metta_learner::vspace-main']). - -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ ['{',garfield,'}'], -->,cat], - [1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ ['{',garfield,'}'], -->,cat], - [1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ ['{',garfield,'}'], -->,cat], - [1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ [cat,*,sky], -->,like], - [1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ [cat,*,sky], -->,like], - [1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ [cat,*,sky], -->,like], - [1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ sky, - -->, - [ '$OBJ'(claz_bracket_vector,[blue])]], - [1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ sky, - -->, - [ '$OBJ'(claz_bracket_vector,[blue])]], - [1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ sky, - -->, - [ '$OBJ'(claz_bracket_vector,[blue])]], - [1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -%;The following question needs both a deduction and abduction step: -( :- ( - metta_eval( [ 'EternalQuestion', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). - -metta_defn_ES( - [ 'EternalQuestion', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], - A], - [ [B,B], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.2965825874694874)) (eternal (Cons 2 (Cons 1 (Cons 3 Nil))) 0.643288027761712))] -%;Lets stress the control mechanism as these type of events with common extension or intension causes dozens of derivations: -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ A ,-->,cat], - [ 1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ 'A',-->,cat], - [ 1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ 'A',-->,cat], - [ 1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ B ,-->,cat], - [ 1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ 'B',-->,cat], - [ 1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ 'B',-->,cat], - [ 1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ C ,-->,cat], - [ 1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ 'C',-->,cat], - [ 1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ 'C',-->,cat], - [ 1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -:-metta_eval(['EternalQuestion',[['A',&,'B'],-->,cat]]). - -metta_defn_ES( - [ 'EternalQuestion', - [['A',&,'B'],-->,cat]], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', - [['A',&,'B'],-->,cat], A,_,_], - A], - [ [B,B], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;expected: [(Event (((A & B) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 4 (Cons 5 Nil)) (5 0.4525)))] -:-metta_eval(['EternalQuestion',[['B',&,'C'],-->,cat]]). - -metta_defn_ES( - [ 'EternalQuestion', - [['B',&,'C'],-->,cat]], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', - [['B',&,'C'],-->,cat], A,_,_], - A], - [ [B,B], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;expected: [(Event (((B & C) --> cat) (1.0 0.44751381215469616)) (eternal (Cons 5 (Cons 6 Nil)) (6 0.4525)))] -( :- ( - metta_eval( [ 'EternalQuestion', - [ [['A',&,'B'],&,'C'], -->,cat]])) ). - -metta_defn_ES( - [ 'EternalQuestion', - [ [['A',&,'B'],&,'C'], -->,cat]], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', - [ [['A',&,'B'],&,'C'], -->,cat], A,_,_], - A], - [ [B,B], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;expected: [(Event ((((A & B) & C) --> cat) (1.0 0.42163100057836905)) (eternal (Cons 5 (Cons 4 (Cons 6 Nil))) (6 0.195593125))) -( :- ( - metta_eval( [ 'AddBeliefEvent', - [ [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], - [1.0,0.9]]])) ). - -metta_defn_ES( - [ 'AddBeliefEvent', - [ [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], - [1.0,0.9]]], - [ 'let*', - [ [ [ A , B ], - [ 'GetReasonerState']], - [ C, - [ 'Event', - [ [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], - [1.0,0.9]], - [ A, - B, - [A,1.0]]]]], - [ do, - [ sequential, - [ ['EventToFIFO',C], - [ let, - D, - [ 'TemporalImplicationInduction', - ['get-state','&FIFO']], - ['UpdateConcept',D,A]], - ['ProcessBeliefEvent',C,A], - [ 'Anticipate', - ['get-state','&FIFO'], - A], - ['BeliefCycle',A]]]]]). - -( :- ( - metta_eval( [ 'EternalQuestion', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]])) ). - -metta_defn_ES( - [ 'EternalQuestion', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like]], - [ case, - [ match, - [ superpose, - ['&attentional_focus','&concepts']], - [ 'Concept', - [ [ ['{',garfield,'}'], - *, - [ '$OBJ'(claz_bracket_vector,[blue])]], -->,like], A,_,_], - A], - [ [B,B], - [ '%void%', - [ 'Event', - [ 'None', - [0.5,0.0]], - [eternal,[],0.0]]]]]). - -%;expected: [(Event (((({ garfield }) * ([ blue ])) --> like) (1.0 0.5692683291397822)) (eternal (Cons 7 (Cons 2 (Cons 1 (Cons 3 Nil)))) 0.0))] -%;Please notice that it has revised it with the prior derived result, as you can also see in the evidence trail 1,2,3 being included -:-metta_eval(['metta_learner::vspace-main']). - -%;debug: -:-metta_eval(['CollapseCardinality',['get-atoms','&belief_events']]). - -metta_defn_ES( - [ 'CollapseCardinality', - ['get-atoms','&belief_events']], - [ 'TupleCount', - [ collapse, - [ 'CountElement', - ['get-atoms','&belief_events']]]]). - -metta_defn_ES( - [ 'CountElement', - ['get-atoms','&belief_events']], - [ case, - ['get-atoms','&belief_events'], - [ [ _,1]]]). - -%;[8] -:-metta_eval(['CollapseCardinality',['get-atoms','&attentional_focus']]). - -metta_defn_ES( - [ 'CollapseCardinality', - ['get-atoms','&attentional_focus']], - [ 'TupleCount', - [ collapse, - [ 'CountElement', - ['get-atoms','&attentional_focus']]]]). - -metta_defn_ES( - [ 'CountElement', - ['get-atoms','&attentional_focus']], - [ case, - ['get-atoms','&attentional_focus'], - [ [ _,1]]]). - -%;[8] -:-metta_eval(['CollapseCardinality',['get-atoms','&concepts']]). - -metta_defn_ES( - [ 'CollapseCardinality', - ['get-atoms','&concepts']], - [ 'TupleCount', - [ collapse, - [ 'CountElement', - ['get-atoms','&concepts']]]]). - -metta_defn_ES( - [ 'CountElement', - ['get-atoms','&concepts']], - [ case, - ['get-atoms','&concepts'], - [ [ _,1]]]). - -%;[100] -:-metta_eval(['metta_learner::vspace-main']). - -% 17,439,387 inferences, 1.561 CPU in 1.572 seconds (99% CPU, 11172049 Lips) - diff --git a/metta_vspace/pyswip_lng/metta_test_nars_1.pl b/metta_vspace/pyswip_lng/metta_test_nars_1.pl new file mode 120000 index 00000000..f307b7b5 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_test_nars_1.pl @@ -0,0 +1 @@ +../pyswip/metta_test_nars_1.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_testing.pl b/metta_vspace/pyswip_lng/metta_testing.pl index c4bd58b4..ea8357d6 100755 --- a/metta_vspace/pyswip_lng/metta_testing.pl +++ b/metta_vspace/pyswip_lng/metta_testing.pl @@ -90,6 +90,7 @@ write_pass_fail(TestSrc,'PASS',G), flag(loonit_success, X, X+1),!, color_g_mesg(cyan,write_src(loonit_success(G))),!. + write_pass_fail([P,C,_],PASS_FAIL,G):- must_det_ll(( loonit_number(Number), @@ -123,8 +124,6 @@ ), write(Trimmed). - - loonit_asserts1(TestSrc,Pre,G) :- nop(Pre), call(G), !, give_pass_credit(TestSrc,Pre,G),!. @@ -145,6 +144,7 @@ color_g_mesg(red,write_src(loonit_failureR(G))),!, %itrace, G. ignore((( + % repl option_value('on-fail','trace'), setup_call_cleanup(debug(metta(eval)),call((Pre,G)),nodebug(metta(eval)))))). %(thread_self(main)->trace;sleep(0.3)) @@ -160,6 +160,7 @@ :- at_halt(loonit_report). + loonit_report(0,0):-!. % ansi_format([fg(yellow)], 'Nothing to report~n', []). loonit_report(Successes,Failures):- ansi_format([bold], 'LoonIt Report~n',[]), diff --git a/metta_vspace/pyswip_lng/metta_toplevel.pl b/metta_vspace/pyswip_lng/metta_toplevel.pl deleted file mode 100755 index 82b52d6e..00000000 --- a/metta_vspace/pyswip_lng/metta_toplevel.pl +++ /dev/null @@ -1,2155 +0,0 @@ -/* Part of SWI-Prolog - - Author: Jan Wielemaker - E-mail: J.Wielemaker@vu.nl - WWW: http://www.swi-prolog.org - Copyright (c) 1985-2021, University of Amsterdam - VU University Amsterdam - SWI-Prolog Solutions b.v. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in - the documentation and/or other materials provided with the - distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. -*/ -/* -:- module('metta_toplevel', - [ '$initialise'/0, % start Prolog - 'metta_toplevel'/0, % Prolog top-level (re-entrant) - '$compile'/0, % `-c' toplevel - '$config'/0, % --dump-runtime-variables toplevel - initialize/0, % Run program '$initialization' - version/0, % Write initial banner - version/1, % Add message to the banner - prolog/0, % user toplevel predicate - 'metta_query_loop'/0, % toplevel predicate - 'metta_execute_query'/3, % +Query, +Bindings, -Truth - residual_goals/1, % +Callable - ('$initialization')/1, % '$initialization' goal (directive) - '$thread_init'/0, % initialise thread - (thread_initialization)/1 % thread '$initialization' goal - ]). -*/ - - /******************************* - * VERSION BANNER * - *******************************/ - -:- dynamic - prolog:version_msg/1. - -%! version is det. -% -% Print the Prolog banner message and messages registered using -% version/1. - -version :- - print_message(banner, welcome). - -%! version(+Message) is det. -% -% Add message to version/0 -/* -:- multifile - system:term_expansion/2. - -system:term_expansion((:- version(Message)), - prolog:version_msg(Message)). - -version(Message) :- - ( prolog:version_msg(Message) - -> true - ; assertz(prolog:version_msg(Message)) - ). -*/ - - /******************************** - * INITIALISATION * - *********************************/ - -%! load_init_file is det. -% -% Load the user customization file. This can be done using ``swipl -f -% file`` or simply using ``swipl``. In the first case we search the -% file both directly and over the alias `user_app_config`. In the -% latter case we only use the alias. - -load_init_file :- - '$cmd_option_val'(init_file, OsFile), - !, - prolog_to_os_filename(File, OsFile), - load_init_file(File, explicit). -load_init_file :- - load_init_file('init.pl', implicit). - -%! loaded_init_file(?Base, ?AbsFile) -% -% Used by prolog_load_context/2 to confirm we are loading a script. - -:- dynamic - loaded_init_file/2. % already loaded init files - -load_init_file(none, _) :- !. -load_init_file(Base, _) :- - loaded_init_file(Base, _), - !. -load_init_file(InitFile, explicit) :- - exists_file(InitFile), - !, - ensure_loaded(user:InitFile). -load_init_file(Base, _) :- - absolute_file_name(user_app_config(Base), InitFile, - [ access(read), - file_errors(fail) - ]), - asserta(loaded_init_file(Base, InitFile)), - load_files(user:InitFile, - [ scope_settings(false) - ]). -load_init_file('init.pl', implicit) :- - ( current_prolog_flag(windows, true), - absolute_file_name(user_profile('swipl.ini'), InitFile, - [ access(read), - file_errors(fail) - ]) - ; expand_file_name('~/.swiplrc', [InitFile]), - exists_file(InitFile) - ), - !, - print_message(warning, backcomp(init_file_moved(InitFile))). -load_init_file(_, _). - -'$load_system_init_file' :- - loaded_init_file(system, _), - !. -'$load_system_init_file' :- - '$cmd_option_val'(system_init_file, Base), - Base \== none, - current_prolog_flag(home, Home), - file_name_extension(Base, rc, Name), - atomic_list_concat([Home, '/', Name], File), - absolute_file_name(File, Path, - [ file_type(prolog), - access(read), - file_errors(fail) - ]), - asserta(loaded_init_file(system, Path)), - load_files(user:Path, - [ silent(true), - scope_settings(false) - ]), - !. -'$load_system_init_file'. - -'$load_script_file' :- - loaded_init_file(script, _), - !. -'$load_script_file' :- - '$cmd_option_val'(script_file, OsFiles), - load_script_files(OsFiles). - -load_script_files([]). -load_script_files([OsFile|More]) :- - prolog_to_os_filename(File, OsFile), - ( absolute_file_name(File, Path, - [ file_type(prolog), - access(read), - file_errors(fail) - ]) - -> asserta(loaded_init_file(script, Path)), - load_files(user:Path, []), - load_files(More) - ; throw(error(existence_error(script_file, File), _)) - ). - - - /******************************* - * AT_INITIALISATION * - *******************************/ - -:- meta_predicate - '$initialization'(0). - -:- '$iso'(('$initialization')/1). - -%! '$initialization'(:Goal) -% -% Runs Goal after loading the file in which this directive -% appears as well as after restoring a saved state. -% -% @see '$initialization'/2 -/* -'$initialization'(Goal) :- - Goal = _:G, - prolog:initialize_now(G, Use), - !, - print_message(warning, initialize_now(G, Use)), - initialization(Goal, now). -'$initialization'(Goal) :- - initialization(Goal, after_load). - -:- multifile - prolog:initialize_now/2, - prolog:message//1. - -prolog:initialize_now(load_foreign_library(_), - 'use :- use_foreign_library/1 instead'). -prolog:initialize_now(load_foreign_library(_,_), - 'use :- use_foreign_library/2 instead'). - -prolog:message(initialize_now(Goal, Use)) --> - [ 'Initialization goal ~p will be executed'-[Goal],nl, - 'immediately for backward compatibility reasons', nl, - '~w'-[Use] - ]. - -'$run_initialization' :- - '$run_initialization'(_, []), - '$thread_init'. - -%! initialize -% -% Run goals registered with `:- '$initialization'(Goal, program).`. Stop -% with an exception if a goal fails or raises an exception. - -initialize :- - forall('$init_goal'(when(program), Goal, Ctx), - run_initialize(Goal, Ctx)). - -run_initialize(Goal, Ctx) :- - ( catch(Goal, E, true), - ( var(E) - -> true - ; throw(error(initialization_error(E, Goal, Ctx), _)) - ) - ; throw(error(initialization_error(failed, Goal, Ctx), _)) - ). - -*/ - /******************************* - * THREAD INITIALIZATION * - *******************************/ -/* -:- meta_predicate - thread_initialization(0). -:- dynamic - '$at_thread_initialization'/1. - -%! thread_initialization(:Goal) -% -% Run Goal now and everytime a new thread is created. - -thread_initialization(Goal) :- - assert('$at_thread_initialization'(Goal)), - call(Goal), - !. - -'$thread_init' :- - ( '$at_thread_initialization'(Goal), - ( call(Goal) - -> fail - ; fail - ) - ; true - ). -*/ - - /******************************* - * FILE SEARCH PATH (-p) * - *******************************/ -/* -%! '$set_file_search_paths' is det. -% -% Process -p PathSpec options. - -'$set_file_search_paths' :- - '$cmd_option_val'(search_paths, Paths), - ( '$member'(Path, Paths), - atom_chars(Path, Chars), - ( phrase('$search_path'(Name, Aliases), Chars) - -> '$reverse'(Aliases, Aliases1), - forall('$member'(Alias, Aliases1), - asserta(user:file_search_path(Name, Alias))) - ; print_message(error, commandline_arg_type(p, Path)) - ), - fail ; true - ). - -'$search_path'(Name, Aliases) --> - '$string'(NameChars), - [=], - !, - {atom_chars(Name, NameChars)}, - '$search_aliases'(Aliases). - -'$search_aliases'([Alias|More]) --> - '$string'(AliasChars), - path_sep, - !, - { '$make_alias'(AliasChars, Alias) }, - '$search_aliases'(More). -'$search_aliases'([Alias]) --> - '$string'(AliasChars), - '$eos', - !, - { '$make_alias'(AliasChars, Alias) }. - -path_sep --> - { current_prolog_flag(windows, true) - }, - !, - [;]. -path_sep --> - [:]. - -'$string'([]) --> []. -'$string'([H|T]) --> [H], '$string'(T). - -'$eos'([], []). - -'$make_alias'(Chars, Alias) :- - catch(term_to_atom(Alias, Chars), _, fail), - ( atom(Alias) - ; functor(Alias, F, 1), - F \== / - ), - !. -'$make_alias'(Chars, Alias) :- - atom_chars(Alias, Chars). - -*/ - /******************************* - * LOADING ASSIOCIATED FILES * - *******************************/ - -%! argv_files(-Files) is det. -% -% Update the Prolog flag `argv`, extracting the leading script files. -/* -argv_files(Files) :- - current_prolog_flag(argv, Argv), - no_option_files(Argv, Argv1, Files, ScriptArgs), - ( ( ScriptArgs == true - ; Argv1 == [] - ) - -> ( Argv1 \== Argv - -> set_prolog_flag(argv, Argv1) - ; true - ) - ; '$usage', - halt(1) - ). - -no_option_files([--|Argv], Argv, [], true) :- !. -no_option_files([Opt|_], _, _, ScriptArgs) :- - ScriptArgs \== true, - sub_atom(Opt, 0, _, _, '-'), - !, - '$usage', - halt(1). -no_option_files([OsFile|Argv0], Argv, [File|T], ScriptArgs) :- - file_name_extension(_, Ext, OsFile), - user:prolog_file_type(Ext, prolog), - !, - ScriptArgs = true, - prolog_to_os_filename(File, OsFile), - no_option_files(Argv0, Argv, T, ScriptArgs). -no_option_files([OsScript|Argv], Argv, [Script], ScriptArgs) :- - ScriptArgs \== true, - !, - prolog_to_os_filename(Script, OsScript), - ( exists_file(Script) - -> true - ; '$existence_error'(file, Script) - ), - ScriptArgs = true. -no_option_files(Argv, Argv, [], _). - -clean_argv :- - ( current_prolog_flag(argv, [--|Argv]) - -> set_prolog_flag(argv, Argv) - ; true - ). - -%! associated_files(-Files) -% -% If SWI-Prolog is started as ., where is -% the extension registered for associated files, set the Prolog -% flag associated_file, switch to the directory holding the file -% and -if possible- adjust the window title. - -associated_files([]) :- - current_prolog_flag(saved_program_class, runtime), - !, - clean_argv. -associated_files(Files) :- - '$set_prolog_file_extension', - argv_files(Files), - ( Files = [File|_] - -> absolute_file_name(File, AbsFile), - set_prolog_flag(associated_file, AbsFile), - set_working_directory(File), - set_window_title(Files) - ; true - ). - -%! set_working_directory(+File) -% -% When opening as a GUI application, e.g., by opening a file from -% the Finder/Explorer/..., we typically want to change working -% directory to the location of the primary file. We currently -% detect that we are a GUI app by the Prolog flag =console_menu=, -% which is set by swipl-win[.exe]. - -set_working_directory(File) :- - current_prolog_flag(console_menu, true), - access_file(File, read), - !, - file_directory_name(File, Dir), - working_directory(_, Dir). -set_working_directory(_). - -set_window_title([File|More]) :- - current_predicate(system:window_title/2), - !, - ( More == [] - -> Extra = [] - ; Extra = ['...'] - ), - atomic_list_concat(['SWI-Prolog --', File | Extra], ' ', Title), - system:window_title(_, Title). -set_window_title(_). - - -%! start_pldoc -% -% If the option =|--pldoc[=port]|= is given, load the PlDoc -% system. - -start_pldoc :- - '$cmd_option_val'(pldoc_server, Server), - ( Server == '' - -> call((doc_server(_), doc_browser)) - ; catch(atom_number(Server, Port), _, fail) - -> call(doc_server(Port)) - ; print_message(error, option_usage(pldoc)), - halt(1) - ). -start_pldoc. - - -%! load_associated_files(+Files) -% -% Load Prolog files specified from the commandline. - -load_associated_files(Files) :- - ( '$member'(File, Files), - load_files(user:File, [expand(false)]), - fail - ; true - ). - -hkey('HKEY_CURRENT_USER/Software/SWI/Prolog'). -hkey('HKEY_LOCAL_MACHINE/Software/SWI/Prolog'). - -'$set_prolog_file_extension' :- - current_prolog_flag(windows, true), - hkey(Key), - catch(win_registry_get_value(Key, fileExtension, Ext0), - _, fail), - !, - ( atom_concat('.', Ext, Ext0) - -> true - ; Ext = Ext0 - ), - ( user:prolog_file_type(Ext, prolog) - -> true - ; asserta(user:prolog_file_type(Ext, prolog)) - ). -'$set_prolog_file_extension'. - -*/ - /******************************** - * TOPLEVEL GOALS * - *********************************/ -/* -%! '$initialise' is semidet. -% -% Called from PL_initialise() to do the Prolog part of the -% '$initialization'. If an exception occurs, this is printed and -% '$initialise' fails. - -'$initialise' :- - catch(initialise_prolog, E, initialise_error(E)). - -initialise_error('$aborted') :- !. -initialise_error(E) :- - print_message(error, initialization_exception(E)), - fail. -*/ -initialise_prolog :- - '$clean_history', - apple_setup_app, - '$run_initialization', - '$load_system_init_file', - set_toplevel, - '$set_file_search_paths', - init_debug_flags, - start_pldoc, - opt_attach_packs, - load_init_file, - catch(setup_colors, E, print_message(warning, E)), - associated_files(Files), - '$load_script_file', - load_associated_files(Files), - '$cmd_option_val'(goals, Goals), - ( Goals == [], - \+ '$init_goal'(when(_), _, _) - -> version % default interactive run - ; run_init_goals(Goals), - ( load_only - -> version - ; run_program_init, - run_main_init - ) - ). - -:- if(current_prolog_flag(apple,true)). -apple_set_working_directory :- - ( expand_file_name('~', [Dir]), - exists_directory(Dir) - -> working_directory(_, Dir) - ; true - ). - -apple_set_locale :- - ( getenv('LC_CTYPE', 'UTF-8'), - apple_current_locale_identifier(LocaleID), - atom_concat(LocaleID, '.UTF-8', Locale), - catch(setlocale(ctype, _Old, Locale), _, fail) - -> setenv('LANG', Locale), - unsetenv('LC_CTYPE') - ; true - ). - -apple_setup_app :- - current_prolog_flag(apple, true), - current_prolog_flag(console_menu, true), % SWI-Prolog.app on MacOS - apple_set_working_directory, - apple_set_locale. -:- endif. -apple_setup_app. - -opt_attach_packs :- - current_prolog_flag(packs, true), - !, - attach_packs. -opt_attach_packs. - -set_toplevel :- - '$cmd_option_val'(toplevel, TopLevelAtom), - catch(term_to_atom(TopLevel, TopLevelAtom), E, - (print_message(error, E), - halt(1))), - create_prolog_flag(toplevel_goal, TopLevel, [type(term)]). - -load_only :- - current_prolog_flag(os_argv, OSArgv), - memberchk('-l', OSArgv), - current_prolog_flag(argv, Argv), - \+ memberchk('-l', Argv). - -%! run_init_goals(+Goals) is det. -% -% Run registered '$initialization' goals on order. If a goal fails, -% execution is halted. - -run_init_goals([]). -run_init_goals([H|T]) :- - run_init_goal(H), - run_init_goals(T). - -run_init_goal(Text) :- - catch(term_to_atom(Goal, Text), E, - ( print_message(error, init_goal_syntax(E, Text)), - halt(2) - )), - run_init_goal(Goal, Text). - -%! run_program_init is det. -% -% Run goals registered using - -run_program_init :- - forall('$init_goal'(when(program), Goal, Ctx), - run_init_goal(Goal, @(Goal,Ctx))). - -run_main_init :- - findall(Goal-Ctx, '$init_goal'(when(main), Goal, Ctx), Pairs), - '$last'(Pairs, Goal-Ctx), - !, - ( current_prolog_flag(toplevel_goal, default) - -> set_prolog_flag(toplevel_goal, halt) - ; true - ), - run_init_goal(Goal, @(Goal,Ctx)). -run_main_init. - -run_init_goal(Goal, Ctx) :- - ( catch_with_backtrace(user:Goal, E, true) - -> ( var(E) - -> true - ; print_message(error, init_goal_failed(E, Ctx)), - halt(2) - ) - ; ( current_prolog_flag(verbose, silent) - -> Level = silent - ; Level = error - ), - print_message(Level, init_goal_failed(failed, Ctx)), - halt(1) - ). - -%! init_debug_flags is det. -% -% Initialize the various Prolog flags that control the debugger and -% toplevel. - -init_debug_flags :- - once(print_predicate(_, [print], PrintOptions)), - Keep = [keep(true)], - create_prolog_flag(answer_write_options, PrintOptions, Keep), - create_prolog_flag(prompt_alternatives_on, determinism, Keep), - create_prolog_flag(toplevel_extra_white_line, true, Keep), - create_prolog_flag(toplevel_print_factorized, false, Keep), - create_prolog_flag(print_write_options, - [ portray(true), quoted(true), numbervars(true) ], - Keep), - create_prolog_flag(toplevel_residue_vars, false, Keep), - create_prolog_flag(toplevel_list_wfs_residual_program, true, Keep), - '$set_debugger_write_options'(print). - -%! setup_backtrace -% -% Initialise printing a backtrace. - -setup_backtrace :- - ( \+ current_prolog_flag(backtrace, false), - load_setup_file(library(prolog_stack)) - -> true - ; true - ). - -%! setup_colors is det. -% -% Setup interactive usage by enabling colored output. - -setup_colors :- - ( \+ current_prolog_flag(color_term, false), - stream_property(user_input, tty(true)), - stream_property(user_error, tty(true)), - stream_property(user_output, tty(true)), - \+ getenv('TERM', dumb), - load_setup_file(user:library(ansi_term)) - -> true - ; true - ). - -%! setup_history -% -% Enable per-directory persistent history. - -setup_history :- - ( \+ current_prolog_flag(save_history, false), - stream_property(user_input, tty(true)), - \+ current_prolog_flag(readline, false), - load_setup_file(library(prolog_history)) - -> prolog_history(enable) - ; true - ), - set_default_history, - '$load_history'. - -%! setup_readline -% -% Setup line editing. - -setup_readline :- - ( current_prolog_flag(readline, swipl_win) - -> true - ; stream_property(user_input, tty(true)), - current_prolog_flag(tty_control, true), - \+ getenv('TERM', dumb), - ( current_prolog_flag(readline, ReadLine) - -> true - ; ReadLine = true - ), - readline_library(ReadLine, Library), - load_setup_file(library(Library)) - -> set_prolog_flag(readline, Library) - ; set_prolog_flag(readline, false) - ). - -readline_library(true, Library) :- - !, - preferred_readline(Library). -readline_library(false, _) :- - !, - fail. -readline_library(Library, Library). - -preferred_readline(editline). -preferred_readline(readline). - -%! load_setup_file(+File) is semidet. -% -% Load a file and fail silently if the file does not exist. - -load_setup_file(File) :- - catch(load_files(File, - [ silent(true), - if(not_loaded) - ]), _, fail). - - -:- '$hide'('metta_toplevel'/0). % avoid in the GUI stacktrace - -%! 'metta_toplevel' -% -% Called from PL_toplevel() - -'metta_toplevel' :- - '$runtoplevel', - print_message(informational, halt). - -%! '$runtoplevel' -% -% Actually run the toplevel. The values `default` and `prolog` both -% start the interactive toplevel, where `prolog` implies the user gave -% =|-t prolog|=. -% -% @see prolog/0 is the default interactive toplevel - -'$runtoplevel' :- - current_prolog_flag(toplevel_goal, TopLevel0), - toplevel_goal(TopLevel0, TopLevel), - user:TopLevel. - -:- dynamic setup_done/0. -:- volatile setup_done/0. - -toplevel_goal(default, 'metta_query_loop') :- - !, - setup_interactive. -toplevel_goal(prolog, 'metta_query_loop') :- - !, - setup_interactive. -toplevel_goal(Goal, Goal). - -setup_interactive :- - setup_done, - !. -setup_interactive :- - asserta(setup_done), - catch(setup_backtrace, E, print_message(warning, E)), - catch(setup_readline, E, print_message(warning, E)), - catch(setup_history, E, print_message(warning, E)). - -%! '$compile' -% -% Toplevel called when invoked with -c option. - -'$compile' :- - ( catch('$compile_', E, (print_message(error, E), halt(1))) - -> true - ; print_message(error, error(goal_failed('$compile'), _)), - halt(1) - ), - halt. % set exit code - -'$compile_' :- - '$load_system_init_file', - catch(setup_colors, _, true), - '$set_file_search_paths', - init_debug_flags, - '$run_initialization', - opt_attach_packs, - use_module(library(qsave)), - qsave:qsave_toplevel. - -%! '$config' -% -% Toplevel when invoked with --dump-runtime-variables -/* -'$config' :- - '$load_system_init_file', - '$set_file_search_paths', - init_debug_flags, - '$run_initialization', - load_files(library(prolog_config)), - ( catch(prolog_dump_runtime_variables, E, - (print_message(error, E), halt(1))) - -> true - ; print_message(error, error(goal_failed(prolog_dump_runtime_variables),_)) - ). - -*/ - /******************************** - * USER INTERACTIVE LOOP * - *********************************/ - -%! prolog -% -% Run the Prolog toplevel. This is now the same as break/0, which -% pretends to be in a break-level if there is a parent -% environment. - -%prolog :- break. - -:- create_prolog_flag(toplevel_mode, backtracking, []). - -%! 'metta_query_loop' -% -% Run the normal Prolog query loop. Note that the query is not -% protected by catch/3. Dealing with unhandled exceptions is done -% by the C-function query_loop(). This ensures that unhandled -% exceptions are really unhandled (in Prolog). - -'metta_query_loop' :- - current_prolog_flag(toplevel_mode, recursive), - !, - break_level(Level), - read_expanded_query(Level, Query, Bindings), - ( Query == end_of_file - -> print_message(query, query(eof)) - ; '$call_no_catch'('metta_execute_query'(Query, Bindings, _)), - ( current_prolog_flag(toplevel_mode, recursive) - -> 'metta_query_loop' - ; '$switch_toplevel_mode'(backtracking), - 'metta_query_loop' % Maybe throw('$switch_toplevel_mode')? - ) - ). -'metta_query_loop' :- - break_level(BreakLev), - repeat, - read_expanded_query(BreakLev, Query, Bindings), - ( Query == end_of_file - -> !, print_message(query, query(eof)) - ; 'metta_execute_query'(Query, Bindings, _), - ( current_prolog_flag(toplevel_mode, recursive) - -> !, - '$switch_toplevel_mode'(recursive), - 'metta_query_loop' - ; fail - ) - ). - -break_level(BreakLev) :- - ( current_prolog_flag(break_level, BreakLev) - -> true - ; BreakLev = -1 - ). - -read_expanded_query(BreakLev, ExpandedQuery, ExpandedBindings) :- - '$current_typein_module'(TypeIn), - ( stream_property(user_input, tty(true)) - -> '$system_prompt'(TypeIn, BreakLev, Prompt), - prompt(Old, '| ') - ; Prompt = '', - prompt(Old, '') - ), - trim_stacks, - trim_heap, - repeat, - read_query(Prompt, Query, Bindings), - prompt(_, Old), - catch(call_expand_query(Query, ExpandedQuery, - Bindings, ExpandedBindings), - Error, - (print_message(error, Error), fail)), - !. - -%! read_s_term_with_history(-Term, +Options) -% -% Read a term guide by Options and maintain a history similar to most -% Unix shells. -% -% When read_history reads a term of the form $silent(Goal), it will -% call Goal and pretend it has not seen anything. This hook is used by -% the GNU-Emacs interface to for communication between GNU-EMACS and -% SWI-Prolog. - -read_s_term_with_history(Term, Options) :- - '$option'(prompt(Prompt), Options, '~! metta>'), - '$option'(input(Input), Options, user_input), - repeat, - prompt_history(Prompt), - read_query_line(Input, Raw), - read_history_(Raw, Term, Options), - !. - - -%! read_query(+Prompt, -Goal, -Bindings) is det. -% -% Read the next query. The first clause deals with the case where -% !-based history is enabled. The second is used if we have command -% line editing. - - -:- if(current_prolog_flag(emscripten, true)). -read_query(_Prompt, Goal, Bindings) :- - '$can_yield', - !, - await(goal, GoalString), - term_string(Goal, GoalString, [variable_names(Bindings)]). -:- endif. -read_query(Prompt, Goal, Bindings) :- - current_prolog_flag(history, N), - integer(N), N > 0, - !, - read_s_term_with_history( - Goal, - [ show(h), - help('!h'), - no_save([trace, end_of_file]), - prompt(Prompt), - variable_names(Bindings) - ]). -read_query(Prompt, Goal, Bindings) :- - remove_history_prompt(Prompt, Prompt1), - repeat, % over syntax errors - prompt1(Prompt1), - read_query_line(user_input, Line), - '$save_history_line'(Line), % save raw line (edit syntax errors) - '$current_typein_module'(TypeIn), - catch(read_s_term_as_atom(Line, Goal, - [ variable_names(Bindings), - module(TypeIn) - ]), E, - ( print_message(error, E), - fail - )), - !, - '$save_history_event'(Line). % save event (no syntax errors) - -%! read_query_line(+Input, -Line) is det. - -read_query_line(Input, Line) :- - stream_property(Input, error(true)), - !, - Line = end_of_file. -read_query_line(Input, Line) :- - catch(read_s_term_as_atom(Input, Line), Error, true), - save_debug_after_read, - ( var(Error) - -> true - ; catch(print_message(error, Error), _, true), - ( Error = error(syntax_error(_),_) - -> fail - ; throw(Error) - ) - ). - -%! read_s_term_as_atom(+Input, -Line) -% -% Read the next term as an atom and skip to the newline or a -% non-space character. - -read_s_term_as_atom(In, Line) :- - read_metta(In,Line), - ( Line == end_of_file - -> true - ; skip_to_nl(In) - ). -/* -read_s_term_as_atom(In, Line) :- - '$raw_read'(In, Line), - ( Line == end_of_file - -> true - ; skip_to_nl(In) - ). -*/ - -%! skip_to_nl(+Input) is det. -% -% Read input after the term. Skips white space and %... comment -% until the end of the line or a non-blank character. - -skip_to_nl(In) :- - repeat, - peek_char(In, C), - ( C == '%' - -> skip(In, '\n') - ; char_type(C, space) - -> get_char(In, _), - C == '\n' - ; true - ), - !. - -remove_history_prompt('', '') :- !. -remove_history_prompt(Prompt0, Prompt) :- - atom_chars(Prompt0, Chars0), - clean_history_prompt_chars(Chars0, Chars1), - delete_leading_blanks(Chars1, Chars), - atom_chars(Prompt, Chars). - -clean_history_prompt_chars([], []). -clean_history_prompt_chars(['~', !|T], T) :- !. -clean_history_prompt_chars([H|T0], [H|T]) :- - clean_history_prompt_chars(T0, T). - -delete_leading_blanks([' '|T0], T) :- - !, - delete_leading_blanks(T0, T). -delete_leading_blanks(L, L). - - -%! set_default_history -% -% Enable !-based numbered command history. This is enabled by default -% if we are not running under GNU-emacs and we do not have our own -% line editing. - -set_default_history :- - current_prolog_flag(history, _), - !. -set_default_history :- - ( ( \+ current_prolog_flag(readline, false) - ; current_prolog_flag(emacs_inferior_process, true) - ) - -> create_prolog_flag(history, 0, []) - ; create_prolog_flag(history, 25, []) - ). - - - /******************************* - * TOPLEVEL DEBUG * - *******************************/ - -%! save_debug_after_read -% -% Called right after the toplevel read to save the debug status if -% it was modified from the GUI thread using e.g. -% -% == -% thread_signal(main, gdebug) -% == -% -% @bug Ideally, the prompt would change if debug mode is enabled. -% That is hard to realise with all the different console -% interfaces supported by SWI-Prolog. - -save_debug_after_read :- - current_prolog_flag(debug, true), - !, - save_debug. -save_debug_after_read. - -save_debug :- - ( tracing, - notrace - -> Tracing = true - ; Tracing = false - ), - current_prolog_flag(debug, Debugging), - set_prolog_flag(debug, false), - create_prolog_flag(query_debug_settings, - debug(Debugging, Tracing), []). - -restore_debug :- - current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), - set_prolog_flag(debug, Debugging), - ( Tracing == true - -> trace - ; true - ). - -%:- '$initialization'(create_prolog_flag(query_debug_settings, debug(false, false), [])). - - - /******************************** - * PROMPTING * - ********************************/ - -'$system_prompt'(Module, BrekLev, Prompt) :- - current_prolog_flag(toplevel_prompt, PAtom), - atom_codes(PAtom, P0), - ( Module \== user - -> '$substitute'('~m', [Module, ': '], P0, P1) - ; '$substitute'('~m', [], P0, P1) - ), - ( BrekLev > 0 - -> '$substitute'('~l', ['[', BrekLev, '] '], P1, P2) - ; '$substitute'('~l', [], P1, P2) - ), - current_prolog_flag(query_debug_settings, debug(Debugging, Tracing)), - ( Tracing == true - -> '$substitute'('~d', ['[trace] '], P2, P3) - ; Debugging == true - -> '$substitute'('~d', ['[debug] '], P2, P3) - ; '$substitute'('~d', [], P2, P3) - ), - atom_chars(Prompt, P3). - -'$substitute'(From, T, Old, New) :- - atom_codes(From, FromCodes), - phrase(subst_chars(T), T0), - '$append'(Pre, S0, Old), - '$append'(FromCodes, Post, S0) -> - '$append'(Pre, T0, S1), - '$append'(S1, Post, New), - !. -'$substitute'(_, _, Old, Old). - -subst_chars([]) --> - []. -subst_chars([H|T]) --> - { atomic(H), - !, - atom_codes(H, Codes) - }, - Codes, - subst_chars(T). -subst_chars([H|T]) --> - H, - subst_chars(T). - - - /******************************** - * EXECUTION * - ********************************/ - -%! 'metta_execute_query'(Goal, Bindings, -Truth) is det. -% -% Execute Goal using Bindings. - -'metta_execute_query'(Var, _, true) :- - var(Var), - !, - print_message(informational, var_query(Var)). -'metta_execute_query'(Goal, Bindings, Truth) :- - '$current_typein_module'(TypeIn), - '$dwim_correct_goal'(TypeIn:Goal, Bindings, Corrected), - !, - setup_call_cleanup( - '$set_source_module'(M0, TypeIn), - expand_goal(Corrected, Expanded), - '$set_source_module'(M0)), - print_message(silent, toplevel_goal(Expanded, Bindings)), - '$execute_goal2'(Expanded, Bindings, Truth). -'metta_execute_query'(_, _, false) :- - notrace, - print_message(query, query(no)). - -'$execute_goal2'(Goal, Bindings, true) :- - restore_debug, - '$current_typein_module'(TypeIn), - residue_vars(TypeIn:Goal, Vars, TypeIn:Delays, Chp), - deterministic(Det), - ( save_debug - ; restore_debug, fail - ), - flush_output(user_output), - ( Det == true - -> DetOrChp = true - ; DetOrChp = Chp - ), - call_expand_answer(Bindings, NewBindings), - ( \+ \+ write_bindings(NewBindings, Vars, Delays, DetOrChp) - -> ! - ). -'$execute_goal2'(_, _, false) :- - save_debug, - print_message(query, query(no)). - -residue_vars(Goal, Vars, Delays, Chp) :- - current_prolog_flag(toplevel_residue_vars, true), - !, - '$wfs_call'(call_residue_vars(stop_backtrace(Goal, Chp), Vars), Delays). -residue_vars(Goal, [], Delays, Chp) :- - '$wfs_call'(stop_backtrace(Goal, Chp), Delays). - -stop_backtrace(Goal, Chp) :- - toplevel_call(Goal), - prolog_current_choice(Chp). - -toplevel_call(Goal) :- - call(Goal), - no_lco. - -no_lco. - -%! write_bindings(+Bindings, +ResidueVars, +Delays, +DetOrChp) -%! is semidet. -% -% Write bindings resulting from a query. The flag -% prompt_alternatives_on determines whether the user is prompted -% for alternatives. =groundness= gives the classical behaviour, -% =determinism= is considered more adequate and informative. -% -% Succeeds if the user accepts the answer and fails otherwise. -% -% @arg ResidueVars are the residual constraints and provided if -% the prolog flag `toplevel_residue_vars` is set to -% `project`. - -write_bindings(Bindings, ResidueVars, Delays, DetOrChp) :- - '$current_typein_module'(TypeIn), - translate_bindings(Bindings, Bindings1, ResidueVars, TypeIn:Residuals), - omit_qualifier(Delays, TypeIn, Delays1), - name_vars(Bindings1, Residuals, Delays1), - write_bindings2(Bindings1, Residuals, Delays1, DetOrChp). - -write_bindings2([], Residuals, Delays, _) :- - current_prolog_flag(prompt_alternatives_on, groundness), - !, - print_message(query, query(yes(Delays, Residuals))). -write_bindings2(Bindings, Residuals, Delays, true) :- - current_prolog_flag(prompt_alternatives_on, determinism), - !, - print_message(query, query(yes(Bindings, Delays, Residuals))). -write_bindings2(Bindings, Residuals, Delays, Chp) :- - repeat, - print_message(query, query(more(Bindings, Delays, Residuals))), - get_respons(Action, Chp), - ( Action == redo - -> !, fail - ; Action == show_again - -> fail - ; !, - print_message(query, query(done)) - ). - -name_vars(Bindings, Residuals, Delays) :- - current_prolog_flag(toplevel_name_variables, true), - !, - '$term_multitons'(t(Bindings,Residuals,Delays), Vars), - name_vars_(Vars, Bindings, 0), - term_variables(t(Bindings,Residuals,Delays), SVars), - anon_vars(SVars). -name_vars(_Bindings, _Residuals, _Delays). - -name_vars_([], _, _). -name_vars_([H|T], Bindings, N) :- - name_var(Bindings, Name, N, N1), - H = '$VAR'(Name), - name_vars_(T, Bindings, N1). - -anon_vars([]). -anon_vars(['$VAR'('_')|T]) :- - anon_vars(T). - -name_var(Bindings, Name, N0, N) :- - between(N0, infinite, N1), - I is N1//26, - J is 0'A + N1 mod 26, %' - ( I == 0 - -> format(atom(Name), '_~c', [J]) - ; format(atom(Name), '_~c~d', [J, I]) - ), - ( current_prolog_flag(toplevel_print_anon, false) - -> true - ; \+ is_bound(Bindings, Name) - ), - !, - N is N1+1. - -is_bound([Vars=_|T], Name) :- - ( in_vars(Vars, Name) - -> true - ; is_bound(T, Name) - ). - -in_vars(Name, Name) :- !. -in_vars(Names, Name) :- - '$member'(Name, Names). - -%! residual_goals(:NonTerminal) -% -% Directive that registers NonTerminal as a collector for residual -% goals. -/* -:- multifile - residual_goal_collector/1. - -:- meta_predicate - residual_goals(2). - -residual_goals(NonTerminal) :- - throw(error(context_error(nodirective, residual_goals(NonTerminal)), _)). - -system:term_expansion((:- residual_goals(NonTerminal)), - 'metta_toplevel':residual_goal_collector(M2:Head)) :- - \+ current_prolog_flag(xref, true), - prolog_load_context(module, M), - strip_module(M:NonTerminal, M2, Head), - '$must_be'(callable, Head). - -%! prolog:residual_goals// is det. -% -% DCG that collects residual goals that are not associated with -% the answer through attributed variables. - -:- public prolog:residual_goals//0. - -prolog:residual_goals --> - { findall(NT, residual_goal_collector(NT), NTL) }, - collect_residual_goals(NTL). - -collect_residual_goals([]) --> []. -collect_residual_goals([H|T]) --> - ( call(H) -> [] ; [] ), - collect_residual_goals(T). -*/ - - -%! prolog:translate_bindings(+Bindings0, -Bindings, +ResidueVars, -%! +ResidualGoals, -Residuals) is det. -% -% Translate the raw variable bindings resulting from successfully -% completing a query into a binding list and list of residual -% goals suitable for human consumption. -% -% @arg Bindings is a list of binding(Vars,Value,Substitutions), -% where Vars is a list of variable names. E.g. -% binding(['A','B'],42,[])` means that both the variable -% A and B have the value 42. Values may contain terms -% '$VAR'(Name) to indicate sharing with a given variable. -% Value is always an acyclic term. If cycles appear in the -% answer, Substitutions contains a list of substitutions -% that restore the original term. -% -% @arg Residuals is a pair of two lists representing residual -% goals. The first element of the pair are residuals -% related to the query variables and the second are -% related that are disconnected from the query. -/* -:- public - prolog:translate_bindings/5. -:- meta_predicate - prolog:translate_bindings(+, -, +, +, :). - -prolog:translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals) :- - translate_bindings(Bindings0, Bindings, ResVars, ResGoals, Residuals). -*/ -translate_bindings(Bindings0, Bindings, ResidueVars, Residuals) :- - prolog:residual_goals(ResidueGoals, []), - translate_bindings(Bindings0, Bindings, ResidueVars, ResidueGoals, - Residuals). - -translate_bindings(Bindings0, Bindings, [], [], _:[]-[]) :- - term_attvars(Bindings0, []), - !, - join_same_bindings(Bindings0, Bindings1), - factorize_bindings(Bindings1, Bindings2), - bind_vars(Bindings2, Bindings3), - filter_bindings(Bindings3, Bindings). -translate_bindings(Bindings0, Bindings, ResidueVars, ResGoals0, - TypeIn:Residuals-HiddenResiduals) :- - project_constraints(Bindings0, ResidueVars), - hidden_residuals(ResidueVars, Bindings0, HiddenResiduals0), - omit_qualifiers(HiddenResiduals0, TypeIn, HiddenResiduals), - copy_term(Bindings0+ResGoals0, Bindings1+ResGoals1, Residuals0), - '$append'(ResGoals1, Residuals0, Residuals1), - omit_qualifiers(Residuals1, TypeIn, Residuals), - join_same_bindings(Bindings1, Bindings2), - factorize_bindings(Bindings2, Bindings3), - bind_vars(Bindings3, Bindings4), - filter_bindings(Bindings4, Bindings). - -hidden_residuals(ResidueVars, Bindings, Goal) :- - term_attvars(ResidueVars, Remaining), - term_attvars(Bindings, QueryVars), - subtract_vars(Remaining, QueryVars, HiddenVars), - copy_term(HiddenVars, _, Goal). - -subtract_vars(All, Subtract, Remaining) :- - sort(All, AllSorted), - sort(Subtract, SubtractSorted), - ord_subtract(AllSorted, SubtractSorted, Remaining). - -ord_subtract([], _Not, []). -ord_subtract([H1|T1], L2, Diff) :- - diff21(L2, H1, T1, Diff). - -diff21([], H1, T1, [H1|T1]). -diff21([H2|T2], H1, T1, Diff) :- - compare(Order, H1, H2), - diff3(Order, H1, T1, H2, T2, Diff). - -diff12([], _H2, _T2, []). -diff12([H1|T1], H2, T2, Diff) :- - compare(Order, H1, H2), - diff3(Order, H1, T1, H2, T2, Diff). - -diff3(<, H1, T1, H2, T2, [H1|Diff]) :- - diff12(T1, H2, T2, Diff). -diff3(=, _H1, T1, _H2, T2, Diff) :- - ord_subtract(T1, T2, Diff). -diff3(>, H1, T1, _H2, T2, Diff) :- - diff21(T2, H1, T1, Diff). - - -%! project_constraints(+Bindings, +ResidueVars) is det. -% -% Call :project_attributes/2 if the Prolog flag -% `toplevel_residue_vars` is set to `project`. - -project_constraints(Bindings, ResidueVars) :- - !, - term_attvars(Bindings, AttVars), - phrase(attribute_modules(AttVars), Modules0), - sort(Modules0, Modules), - term_variables(Bindings, QueryVars), - project_attributes(Modules, QueryVars, ResidueVars). -project_constraints(_, _). - -project_attributes([], _, _). -project_attributes([M|T], QueryVars, ResidueVars) :- - ( current_predicate(M:project_attributes/2), - catch(M:project_attributes(QueryVars, ResidueVars), E, - print_message(error, E)) - -> true - ; true - ), - project_attributes(T, QueryVars, ResidueVars). - -attribute_modules([]) --> []. -attribute_modules([H|T]) --> - { get_attrs(H, Attrs) }, - attrs_modules(Attrs), - attribute_modules(T). - -attrs_modules([]) --> []. -attrs_modules(att(Module, _, More)) --> - [Module], - attrs_modules(More). - - -%! join_same_bindings(Bindings0, Bindings) -% -% Join variables that are bound to the same value. Note that we -% return the _last_ value. This is because the factorization may -% be different and ultimately the names will be printed as V1 = -% V2, ... VN = Value. Using the last, Value has the factorization -% of VN. - -join_same_bindings([], []). -join_same_bindings([Name=V0|T0], [[Name|Names]=V|T]) :- - take_same_bindings(T0, V0, V, Names, T1), - join_same_bindings(T1, T). - -take_same_bindings([], Val, Val, [], []). -take_same_bindings([Name=V1|T0], V0, V, [Name|Names], T) :- - V0 == V1, - !, - take_same_bindings(T0, V1, V, Names, T). -take_same_bindings([Pair|T0], V0, V, Names, [Pair|T]) :- - take_same_bindings(T0, V0, V, Names, T). - - -%! omit_qualifiers(+QGoals, +TypeIn, -Goals) is det. -% -% Omit unneeded module qualifiers from QGoals relative to the -% given module TypeIn. - - -omit_qualifiers([], _, []). -omit_qualifiers([Goal0|Goals0], TypeIn, [Goal|Goals]) :- - omit_qualifier(Goal0, TypeIn, Goal), - omit_qualifiers(Goals0, TypeIn, Goals). - -omit_qualifier(M:G0, TypeIn, G) :- - M == TypeIn, - !, - omit_meta_qualifiers(G0, TypeIn, G). -omit_qualifier(M:G0, TypeIn, G) :- - predicate_property(TypeIn:G0, imported_from(M)), - \+ predicate_property(G0, transparent), - !, - G0 = G. -omit_qualifier(_:G0, _, G) :- - predicate_property(G0, built_in), - \+ predicate_property(G0, transparent), - !, - G0 = G. -omit_qualifier(M:G0, _, M:G) :- - atom(M), - !, - omit_meta_qualifiers(G0, M, G). -omit_qualifier(G0, TypeIn, G) :- - omit_meta_qualifiers(G0, TypeIn, G). - -omit_meta_qualifiers(V, _, V) :- - var(V), - !. -omit_meta_qualifiers((QA,QB), TypeIn, (A,B)) :- - !, - omit_qualifier(QA, TypeIn, A), - omit_qualifier(QB, TypeIn, B). -omit_meta_qualifiers(tnot(QA), TypeIn, tnot(A)) :- - !, - omit_qualifier(QA, TypeIn, A). -omit_meta_qualifiers(freeze(V, QGoal), TypeIn, freeze(V, Goal)) :- - callable(QGoal), - !, - omit_qualifier(QGoal, TypeIn, Goal). -omit_meta_qualifiers(when(Cond, QGoal), TypeIn, when(Cond, Goal)) :- - callable(QGoal), - !, - omit_qualifier(QGoal, TypeIn, Goal). -omit_meta_qualifiers(G, _, G). - - -%! bind_vars(+BindingsIn, -Bindings) -% -% Bind variables to '$VAR'(Name), so they are printed by the names -% used in the query. Note that by binding in the reverse order, -% variables bound to one another come out in the natural order. - -bind_vars(Bindings0, Bindings) :- - bind_query_vars(Bindings0, Bindings, SNames), - bind_skel_vars(Bindings, Bindings, SNames, 1, _). - -bind_query_vars([], [], []). -bind_query_vars([binding(Names,Var,[Var2=Cycle])|T0], - [binding(Names,Cycle,[])|T], [Name|SNames]) :- - Var == Var2, % also implies var(Var) - !, - '$last'(Names, Name), - Var = '$VAR'(Name), - bind_query_vars(T0, T, SNames). -bind_query_vars([B|T0], [B|T], AllNames) :- - B = binding(Names,Var,Skel), - bind_query_vars(T0, T, SNames), - ( var(Var), \+ attvar(Var), Skel == [] - -> AllNames = [Name|SNames], - '$last'(Names, Name), - Var = '$VAR'(Name) - ; AllNames = SNames - ). - - - -bind_skel_vars([], _, _, N, N). -bind_skel_vars([binding(_,_,Skel)|T], Bindings, SNames, N0, N) :- - bind_one_skel_vars(Skel, Bindings, SNames, N0, N1), - bind_skel_vars(T, Bindings, SNames, N1, N). - -%! bind_one_skel_vars(+Subst, +Bindings, +VarName, +N0, -N) -% -% Give names to the factorized variables that do not have a name -% yet. This introduces names _S, avoiding duplicates. If a -% factorized variable shares with another binding, use the name of -% that variable. -% -% @tbd Consider the call below. We could remove either of the -% A = x(1). Which is best? -% -% == -% ?- A = x(1), B = a(A,A). -% A = x(1), -% B = a(A, A), % where -% A = x(1). -% == - -bind_one_skel_vars([], _, _, N, N). -bind_one_skel_vars([Var=Value|T], Bindings, Names, N0, N) :- - ( var(Var) - -> ( '$member'(binding(Names, VVal, []), Bindings), - same_term(Value, VVal) - -> '$last'(Names, VName), - Var = '$VAR'(VName), - N2 = N0 - ; between(N0, infinite, N1), - atom_concat('_S', N1, Name), - \+ memberchk(Name, Names), - !, - Var = '$VAR'(Name), - N2 is N1 + 1 - ) - ; N2 = N0 - ), - bind_one_skel_vars(T, Bindings, Names, N2, N). - - -%! factorize_bindings(+Bindings0, -Factorized) -% -% Factorize cycles and sharing in the bindings. - -factorize_bindings([], []). -factorize_bindings([Name=Value|T0], [binding(Name, Skel, Subst)|T]) :- - '$factorize_term'(Value, Skel, Subst0), - ( current_prolog_flag(toplevel_print_factorized, true) - -> Subst = Subst0 - ; only_cycles(Subst0, Subst) - ), - factorize_bindings(T0, T). - - -only_cycles([], []). -only_cycles([B|T0], List) :- - ( B = (Var=Value), - Var = Value, - acyclic_term(Var) - -> only_cycles(T0, List) - ; List = [B|T], - only_cycles(T0, T) - ). - - -%! filter_bindings(+Bindings0, -Bindings) -% -% Remove bindings that must not be printed. There are two of them: -% Variables whose name start with '_' and variables that are only -% bound to themselves (or, unbound). - -filter_bindings([], []). -filter_bindings([H0|T0], T) :- - hide_vars(H0, H), - ( ( arg(1, H, []) - ; self_bounded(H) - ) - -> filter_bindings(T0, T) - ; T = [H|T1], - filter_bindings(T0, T1) - ). - -hide_vars(binding(Names0, Skel, Subst), binding(Names, Skel, Subst)) :- - hide_names(Names0, Skel, Subst, Names). - -hide_names([], _, _, []). -hide_names([Name|T0], Skel, Subst, T) :- - ( sub_atom(Name, 0, _, _, '_'), - current_prolog_flag(toplevel_print_anon, false), - sub_atom(Name, 1, 1, _, Next), - char_type(Next, prolog_var_start) - -> true - ; Subst == [], - Skel == '$VAR'(Name) - ), - !, - hide_names(T0, Skel, Subst, T). -hide_names([Name|T0], Skel, Subst, [Name|T]) :- - hide_names(T0, Skel, Subst, T). - -self_bounded(binding([Name], Value, [])) :- - Value == '$VAR'(Name). - -%! get_respons(-Action, +Chp) -% -% Read the continuation entered by the user. - -:- if(current_prolog_flag(emscripten, true)). -get_respons(Action, _Chp) :- - '$can_yield', - !, - await(more, ActionS), - atom_string(Action, ActionS). -:- endif. -get_respons(Action, Chp) :- - repeat, - flush_output(user_output), - get_single_char(Char), - answer_respons(Char, Chp, Action), - ( Action == again - -> print_message(query, query(action)), - fail - ; ! - ). - -answer_respons(Char, _, again) :- - '$in_reply'(Char, '?h'), - !, - print_message(help, query(help)). -answer_respons(Char, _, redo) :- - '$in_reply'(Char, ';nrNR \t'), - !, - print_message(query, if_tty([ansi(bold, ';', [])])). -answer_respons(Char, _, redo) :- - '$in_reply'(Char, 'tT'), - !, - trace, - save_debug, - print_message(query, if_tty([ansi(bold, '; [trace]', [])])). -answer_respons(Char, _, continue) :- - '$in_reply'(Char, 'ca\n\ryY.'), - !, - print_message(query, if_tty([ansi(bold, '.', [])])). -answer_respons(0'b, _, show_again) :- %' - !, - break. -answer_respons(0'*, Chp, show_again) :- %' - !, - print_last_chpoint(Chp). -answer_respons(Char, _, show_again) :- - print_predicate(Char, Pred, Options), - !, - print_message(query, if_tty(['~w'-[Pred]])), - set_prolog_flag(answer_write_options, Options). -answer_respons(-1, _, show_again) :- - !, - print_message(query, halt('EOF')), - halt(0). -answer_respons(Char, _, again) :- - print_message(query, no_action(Char)). - -print_predicate(0'w, [write], [ quoted(true), - spacing(next_argument) - ]). -print_predicate(0'p, [print], [ quoted(true), - portray(true), - max_depth(10), - spacing(next_argument) - ]). - - -print_last_chpoint(Chp) :- - current_predicate(print_last_choice_point/0), - !, - print_last_chpoint_(Chp). -print_last_chpoint(Chp) :- - use_module(library(prolog_stack), [print_last_choicepoint/2]), - print_last_chpoint_(Chp). - -print_last_chpoint_(Chp) :- - print_last_choicepoint(Chp, [message_level(information)]). - - - /******************************* - * EXPANSION * - *******************************/ - -:- user:dynamic(expand_query/4). -:- user:multifile(expand_query/4). - -call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- - user:expand_query(Goal, Expanded, Bindings, ExpandedBindings), - !. -call_expand_query(Goal, Expanded, Bindings, ExpandedBindings) :- - toplevel_variables:expand_query(Goal, Expanded, Bindings, ExpandedBindings), - !. -call_expand_query(Goal, Goal, Bindings, Bindings). - - -:- user:dynamic(expand_answer/2). -:- user:multifile(expand_answer/2). - -call_expand_answer(Goal, Expanded) :- - user:expand_answer(Goal, Expanded), - !. -call_expand_answer(Goal, Expanded) :- - toplevel_variables:expand_answer(Goal, Expanded), - !. -call_expand_answer(Goal, Goal). - - - -/* Part of SWI-Prolog - - Author: Jan Wielemaker - E-mail: J.Wielemaker@vu.nl - WWW: http://www.swi-prolog.org - Copyright (c) 1985-2020, University of Amsterdam - VU University Amsterdam - CWI Amsterdam - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in - the documentation and/or other materials provided with the - distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. -*/ -/* -:- module('$history', - [ read_term_with_history/2, % -Term, +Line - '$save_history_line'/1, % +Line - '$clean_history'/0, - '$load_history'/0, - '$save_history_event'/1 - ]). - -%! read_term_with_history(-Term, +Options) -% -% Read a term guide by Options and maintain a history similar to most -% Unix shells. -% -% When read_history reads a term of the form $silent(Goal), it will -% call Goal and pretend it has not seen anything. This hook is used by -% the GNU-Emacs interface to for communication between GNU-EMACS and -% SWI-Prolog. - -read_term_with_history(Term, Options) :- - '$option'(prompt(Prompt), Options, '~! ?> '), - '$option'(input(Input), Options, user_input), - repeat, - prompt_history(Prompt), - read_query_line(Input, Raw), - read_history_(Raw, Term, Options), - !. -*/ -read_history_(Raw, _Term, Options) :- - '$option'(show(Raw), Options, history), - list_history, - !, - fail. -read_history_(Raw, _Term, Options) :- - '$option'(help(Raw), Options, '!help'), - '$option'(show(Show), Options, '!history'), - print_message(help, history(help(Show, Raw))), - !, - fail. -read_history_(Raw, Term, Options) :- - expand_history(Raw, Expanded, Changed), - '$save_history_line'(Expanded), - '$option'(module(Module), Options, Var), - ( Module == Var - -> '$current_typein_module'(Module) - ; true - ), - ( '$select'(variable_names(Bindings), Options, Options1) - -> true - ; Options1 = Options, - i(Bindings) % ignore - ), - catch(read_term_from_atom(Expanded, Term0, - [ module(Module), - variable_names(Bindings0) - | Options1 - ]), - E, - ( print_message(error, E), - fail - )), - ( var(Term0) - -> Term = Term0, - Bindings = Bindings0 - ; Term0 = '$silent'(Goal) - -> user:ignore(Goal), - read_term_with_history(Term, Options) - ; save_event(Expanded, Options), - ( Changed == true - -> print_message(query, history(expanded(Expanded))) - ; true - ), - Term = Term0, - Bindings = Bindings0 - ). - -i(_). - -% list_history -% Write history events to the current output stream. - -list_history :- - ( '$history'(Last, _) - -> true - ; Last = 0 - ), - history_depth_(Depth), - plus(First, Depth, Last), - findall(Nr/Event, - ( between(First, Last, Nr), - '$history'(Nr, Event) - ), - Events), - print_message(query, history(history(Events))). - -'$clean_history' :- - retractall('$history'(_,_)). - -%! '$load_history' is det. -% -% Load persistent history using a hook - -'$load_history' :- - '$clean_history', - current_prolog_flag(history, Depth), - Depth > 0, - catch(prolog:history(current_input, load), _, true), !. -'$load_history'. - - -%% prompt_history(+Prompt) -% -% Give prompt, substituting '~!' by the event number. - -prompt_history('') :- - !, - ttyflush. -prompt_history(Prompt) :- - ( '$history'(Last, _) - -> This is Last + 1 - ; This = 1 - ), - atom_codes(Prompt, SP), - atom_codes(This, ST), - ( atom_codes('~!', Repl), - substitute(Repl, ST, SP, String) - -> prompt1(String) - ; prompt1(Prompt) - ), - ttyflush. - -% substitute(+Old, +New, +String, -Substituted) -% substitute first occurence of Old in String by New - -substitute(Old, New, String, Substituted) :- - '$append'(Head, OldAndTail, String), - '$append'(Old, Tail, OldAndTail), - !, - '$append'(Head, New, HeadAndNew), - '$append'(HeadAndNew, Tail, Substituted), - !. - -%! '$save_history_line'(+Line) -% -% Add Line to the command line editing history. - -:- multifile - prolog:history_line/2. - -'$save_history_line'(end_of_file) :- !. -'$save_history_line'(Line) :- - format(string(CompleteLine), '~W~W', - [ Line, [partial(true)], - '.', [partial(true)] - ]), - catch(prolog:history(user_input, add(CompleteLine)), _, fail), - !. -'$save_history_line'(_). - -%! save_event(+Event, +Options) -% -% Save Event into the history system unless it appears in the -% option `no_save`. - -save_event(Event, Options) :- - '$option'(no_save(Dont), Options), - memberchk(Event, Dont), - !. -save_event(Event, _) :- - '$save_history_event'(Event). - -%! '$save_history_event'(+Event) is det. -% -% Save an input line as text into the !- based history. Event is one -% of -% -% * a *string*. The event is added with a next number at the end. -% * a *pair*. The event is added with the given sequence number. - -:- thread_local - '$history'/2. - -'$save_history_event'(Num-String) :- - integer(Num), string(String), - !, - asserta('$history'(Num, String)), - truncate_history(Num). -'$save_history_event'(Event) :- - to_string(Event, Event1), - !, - last_event(Num, String), - ( Event1 == String - -> true - ; New is Num + 1, - asserta('$history'(New, Event1)), - truncate_history(New) - ). -'$save_history_event'(Event) :- - '$type_error'(history_event, Event). - -last_event(Num, String) :- - '$history'(Num, String), - !. -last_event(0, ""). - -to_string(String, String) :- - string(String), - !. -to_string(Atom, String) :- - atom_string(Atom, String). - -truncate_history(New) :- - history_depth_(Depth), - remove_history(New, Depth). - -remove_history(New, Depth) :- - New - Depth =< 0, - !. -remove_history(New, Depth) :- - Remove is New - Depth, - retract('$history'(Remove, _)), - !. -remove_history(_, _). - -% history_depth_(-Depth) -% Define the depth to which to keep the history. - -history_depth_(N) :- - current_prolog_flag(history, N), - integer(N), - N > 0, - !. -history_depth_(25). - -% expand_history(+Raw, -Expanded) -% Expand Raw using the available history list. Expandations performed -% are: -% -% !match % Last event starting -% !n % Event nr. -% !! % last event -% -% Note: the first character after a '!' should be a letter or number to -% avoid problems with the cut. - -expand_history(Raw, Expanded, Changed) :- - atom_chars(Raw, RawString), - expand_history2(RawString, ExpandedString, Changed), - atom_chars(Expanded, ExpandedString), - !. - -expand_history2([!], [!], false) :- !. -expand_history2([!, C|Rest], [!|Expanded], Changed) :- - not_event_char(C), - !, - expand_history2([C|Rest], Expanded, Changed). -expand_history2([!|Rest], Expanded, true) :- - !, - match_event(Rest, Event, NewRest), - '$append'(Event, RestExpanded, Expanded), - !, - expand_history2(NewRest, RestExpanded, _). -expand_history2(['\''|In], ['\''|Out], Changed) :- - !, - skip_quoted(In, '\'', Out, Tin, Tout), - expand_history2(Tin, Tout, Changed). -expand_history2(['"'|In], ['"'|Out], Changed) :- - !, - skip_quoted(In, '"', Out, Tin, Tout), - expand_history2(Tin, Tout, Changed). -expand_history2([H|T], [H|R], Changed) :- - !, - expand_history2(T, R, Changed). -expand_history2([], [], false). - -skip_quoted([Q|T],Q,[Q|R], T, R) :- !. -skip_quoted([\,Q|T0],Q,[\,Q|T], In, Out) :- - !, - skip_quoted(T0, Q, T, In, Out). -skip_quoted([Q,Q|T0],Q,[Q,Q|T], In, Out) :- - !, - skip_quoted(T0, Q, T, In, Out). -skip_quoted([C|T0],Q,[C|T], In, Out) :- - !, - skip_quoted(T0, Q, T, In, Out). -skip_quoted([], _, [], [], []). - -% get_last_event(-String) -% return last event typed as a string - -get_last_event(Event) :- - '$history'(_, Atom), - atom_chars(Atom, Event), - !. -get_last_event(_) :- - print_message(query, history(no_event)), - fail. - -% match_event(+Spec, -Event, -Rest) -% Use Spec as a specification of and event and return the event as Event -% and what is left of Spec as Rest. - -match_event(Spec, Event, Rest) :- - find_event(Spec, Event, Rest), - !. -match_event(_, _, _) :- - print_message(query, history(no_event)), - fail. - -not_event_char(C) :- code_type(C, csym), !, fail. -not_event_char(!) :- !, fail. -not_event_char(_). - -find_event([!|Left], Event, Left) :- - !, - get_last_event(Event). -find_event([N|Rest], Event, Left) :- - code_type(N, digit), - !, - take_number([N|Rest], String, Left), - number_codes(Number, String), - '$history'(Number, Atom), - atom_chars(Atom, Event). -find_event(Spec, Event, Left) :- - take_string(Spec, String, Left), - matching_event(String, Event). - -take_string([C|Rest], [C|String], Left) :- - code_type(C, csym), - !, - take_string(Rest, String, Left). -take_string([C|Rest], [], [C|Rest]) :- !. -take_string([], [], []). - -take_number([C|Rest], [C|String], Left) :- - code_type(C, digit), - !, - take_string(Rest, String, Left). -take_number([C|Rest], [], [C|Rest]) :- !. -take_number([], [], []). - -% matching_event(+String, -Event) -% -% Return first event with prefix String as a Prolog string. - -matching_event(String, Event) :- - '$history'(_, AtomEvent), - atom_chars(AtomEvent, Event), - '$append'(String, _, Event), - !. - diff --git a/metta_vspace/pyswip_lng/metta_toplevel.pl b/metta_vspace/pyswip_lng/metta_toplevel.pl new file mode 120000 index 00000000..78f13d7e --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_toplevel.pl @@ -0,0 +1 @@ +../pyswip/metta_toplevel.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/metta_utils.pl b/metta_vspace/pyswip_lng/metta_utils.pl deleted file mode 100755 index e96034a0..00000000 --- a/metta_vspace/pyswip_lng/metta_utils.pl +++ /dev/null @@ -1,2513 +0,0 @@ - -:- set_prolog_flag(verbose_autoload, false). -:- set_prolog_flag(verbose, silent). -:- set_prolog_flag(verbose_load, silent). -:- ensure_loaded(library(logicmoo_utils)). -:- assert((user:'$exported_op'(_,_,_):- fail)). -:- abolish((system:'$exported_op'/3)). -:- assert((system:'$exported_op'(_,_,_):- fail)). - -:- if(exists_source(library(logicmoo_utils))). -:- ensure_loaded(library(logicmoo_utils)). -:- endif. -:- if(exists_source(library(dictoo))). -:- ensure_loaded(library(dictoo)). -:- endif. - - -:- export(plain_var/1). -plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). -catch_nolog(G):- ignore(catch(notrace(G),E,once(true;nop(u_dmsg(E=G))))). -catch_log(G):- ignore(catch(notrace(G),E,((u_dmsg(E=G),ugtrace(G))))). -% catch_log(G):- ignore(catch(notrace(G),E,((writeln(E=G),catch_nolog(ds))))). - -get_user_error(UE):- stream_property(UE,file_no(2)),!. -get_user_error(UE):- stream_property(UE,alias(user_error)),!. - -ufmt(G):- notrace((fbug(G)->true;ufmt0(G))). -ufmt0(G):- fmt(G)->true;writeln(G). -u_dmsg(G):- is_list(G),!,my_maplist(u_dmsg,G). -u_dmsg(M):- get_user_error(UE), \+ current_predicate(with_toplevel_pp/2),!, with_output_to(UE,ufmt(M)). -u_dmsg(M):- get_user_error(UE),!, with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))). -u_dmsg(M):- get_user_error(UE), stream_property(UO,file_no(1)), current_output(CO),!, - (UO==CO -> fbug(M) ; - (with_toplevel_pp(ansi, with_output_to(UE,ufmt(M))), with_output_to(CO,pp(M)))). -u_dmsg(G):-ufmt(G),!. - - -:- multifile(is_cgi/0). -:- dynamic(is_cgi/0). -:- multifile(arc_html/0). -:- dynamic(arc_html/0). - - -logicmoo_use_swish:- - set_prolog_flag(use_arc_swish,true), - ld_logicmoo_webui,call(call,webui_start_swish_and_clio), - http_handler('/swish', http_redirect(moved, '/swish/'), []). - -arc_user(Nonvar):- nonvar(Nonvar),!,arc_user(Var),!,Nonvar=Var. -arc_user(main):- main_thread, !. %\+ if_thread_main(fail),!. -arc_user(ID):- catch((pengine:pengine_user(ID)),_,fail),!. -arc_user(ID):- catch((xlisting_web:is_cgi_stream,xlisting_web:find_http_session(User),http_session:session_data(User,username(ID))),_,fail),!. -arc_user(ID):- catch((is_cgi, (xlisting_web:find_http_session(ID))),_,fail),!. -arc_user(ID):- is_cgi,!,ID=web_user. -arc_user(ID):- thread_self(ID). - -:- dynamic(arc_user_prop/3). - -%luser_setval(N,V):- nb_setval(N,V),!. -luser_setval(N,V):- arc_user(ID),luser_setval(ID,N,V),!. -luser_setval(ID,N,V):- \+ (arc_sensical_term(N),arc_sensical_term(V)), - warn_skip(not_arc_sensical_term(luser_setval(ID,N,V))). -luser_setval(ID,N,V):- - (atom(N)->nb_setval(N,V);true), - retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). - - -luser_unsetval(N):- ignore(nb_delete(N)), arc_user(ID),luser_unsetval(ID,N),!. -luser_unsetval(ID,N):- retractall(arc_user_prop(ID,N,_)). - -set_luser_default(N,V):- luser_setval(global,N,V). -luser_default(N,V):- var(V),!,luser_getval(N,V). -luser_default(N,V):- set_luser_default(N,V). - -luser_linkval(N,V):- arc_user(ID),luser_linkval(ID,N,V),!. -luser_linkval(ID,N,V):- \+ var(V), \+ (arc_sensical_term(N),arc_sensical_term(V)), - trace, - warn_skip(not_arc_sensical_term(luser_linkval(ID,N,V))). -luser_linkval(ID,N,V):- - (atom(N)->nb_linkval(N,V);true), - retractall(arc_user_prop(ID,N,_)),asserta(arc_user_prop(ID,N,V)). - -arc_sensical_term(O):- nonvar(O), O\==[], O\=='', O \= (_ - _), O\==end_of_file. -arc_sensical_term(V,O):- arc_sensical_term(V), !, O=V. - -%arc_option(grid_size_only):- !,fail. -arc_option(O):- luser_getval(O,t). -if_arc_option(O,G):- (arc_option(O)->must_det_ll(G); true). - -with_luser(N,V,Goal):- - (luser_getval(N,OV);OV=[]), - setup_call_cleanup( - luser_setval(N,V), - once(Goal), - luser_setval(N,OV)). - -%luser_getval(N,V):- nb_current(N,VVV),arc_sensical_term(VVV,VV),!,V=VV. -% caches the valuetemp on this thread -luser_getval(N,V):- luser_getval_0(N,VV),VV=V,arc_sensical_term(V),!. - -luser_getval_0(arc_user,V):- arc_user(V). -luser_getval_0(N,V):- luser_getval_1(N,V). - -luser_getval_1(N,V):- luser_getval_2(N,V). -luser_getval_1(N,V):- luser_getval_3(N,V), \+ (luser_getval_2(N,VV), nop(VV\=V)). -luser_getval_1(N,V):- get_luser_default(N,V), \+ (luser_getval_3(N,VV), nop(VV\=V)), \+ (luser_getval_2(N,VV), nop(VV\=V)). - -%luser_getval_0(N,V):- luser_getval_2(N,V), \+ luser_getval_1(N,_). -%luser_getval_0(N,V):- luser_getval_3(N,V), \+ luser_getval_2(N,_), \+ luser_getval_1(N,_). -%luser_getval_3(N,V):- is_cgi, current_predicate(get_param_req/2),get_param_req(N,M),url_decode_term(M,V). -luser_getval_2(N,V):- \+ main_thread, atom(N), httpd_wrapper:http_current_request(Request), member(search(List),Request),member(N=VV,List),url_decode_term(VV,V),arc_sensical_term(V),!. -luser_getval_2(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. - -luser_getval_3(N,V):- arc_user(ID), arc_user_prop(ID,N,V). -luser_getval_3(_,_):- \+ is_cgi, !, fail. -luser_getval_3(N,V):- \+ main_thread, atom(N), current_predicate(get_param_sess/2),get_param_sess(N,M),url_decode_term(M,V),arc_sensical_term(V). -%luser_getval_3(N,V):- atom(N), nb_current(N,ValV),arc_sensical_term(ValV,Val),Val=V. - - -get_luser_default(N,V):- arc_user_prop(global,N,VV),VV=V,arc_sensical_term(V),!. -get_luser_default(N,V):- atom(N), current_prolog_flag(N,VV),VV=V,arc_sensical_term(V),!. -%luser_getval(ID,N,V):- thread_self(ID),nb_current(N,V),!. -%luser_getval(ID,N,V):- !, ((arc_user_prop(ID,N,V);nb_current(N,V))*->true;arc_user_prop(global,N,V)). - - -ansi_main:- thread_self(main),nop(is_cgi),!. - -main_thread:- thread_self(main),!. -if_thread_main(G):- main_thread->call(G);true. - - - - -:- if(\+ current_predicate(fbug/1)). -%fbug(P):- format(user_error,'~N~p~n',[P]). -:- endif. - - - -substM(T, F, R, R):- T==F,!. -substM(T, _, _, R):- \+ compound(T),!,R=T. -substM([H1|T1], F, R, [H2|T2]) :- !, substM(H1, F, R, H2), substM(T1, F, R, T2). -substM(C1, F, R, C2) :- C1 =.. [Fn|A1], substM_l(A1,F,R,A2),!, C2 =.. [Fn|A2]. -substM_l([], _, _, []). substM_l([H1|T1], F, R, [H2|T2]) :- substM(H1, F, R, H2), substM_l(T1, F, R, T2). - - -pp_m(Cl):- write_src(Cl),!. -pp_m(C,Cl):- color_g_mesg(C,write_src(Cl)),!. -% notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). -pp_q(Cl):- - notrace((format('~N'), ignore(( \+ ((numbervars(Cl,0,_,[singletons(true)]), print_tree_with_final(Cl,"."))))))). - - -ncatch(G,E,F):- catch(G,E,F). -mcatch(G,E,F):- catch(G,E,F). -%mcatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),ignore(call(F)),throw(E))). -%ncatch(G,E,F):- catch(G,E,(fbug(G=E),catch(bt,_,fail),fbug(G=E),call(G))). -%ncatch(G,E,(F)). - - -:- if( \+ current_predicate(if_t/2)). -:- meta_predicate(if_t(0,0)). -if_t(IF, THEN) :- call(call,ignore((((IF,THEN))))). -:- endif. - -:- if( \+ current_predicate(must_ll/1)). -:- meta_predicate(must_ll(0)). -must_ll(G):- md(call,G)*->true;throw(not_at_least_once(G)). -:- endif. - -:- if( \+ current_predicate(at_least_once/1)). -:- meta_predicate(at_least_once(0)). -at_least_once(G):- call(G)*->true;throw(not_at_least_once(G)). -:- endif. - -%wraps_each(must_ll,call). -wraps_each(must_det_ll,once). -md_like(MD):- wraps_each(MD,_). - -remove_must_det(_):- !,fail. -%remove_must_det(MD):- !. -%remove_must_det(MD):- nb_current(remove_must_det(MD),TF),!,TF==true. -%remove_must_det(MD):- \+ false. - -%remove_mds(MD,G,GGG):- compound(G), G = must_det_ll(GG),!,expand_goal(GG,GGG),!. -%remove_mds(MD,G,GGG):- compound(G), G = must_det_l(GG),!,expand_goal(GG,GGG),!. -remove_mds(MD,GG,GO):- sub_term(G,GG),compound(G),compound_name_arg(G,MD,GGGG),subst001(GG,G,GGGG,GGG),remove_mds(MD,GGG,GO). -remove_mds(_,GG,GG). -%remove_mds(MD,G,GG):- compound(G), G = ..[MD,AA], compound(G),removed_term(G,GO),expand_goal(GO,GG). - -%never_rrtrace:-!. -never_rrtrace:- nb_current(cant_rrtrace,t),!,notrace. -never_rrtrace:- is_cgi,notrace. - - -%itrace:- !. -%itrace:- \+ current_prolog_flag(debug,true),!. -itrace:- if_thread_main(trace),!. -ibreak:- if_thread_main(((trace,break))). -%recolor(_,_):- ibreak. - -%tc_arg(N,C,E):- compound(C),!,arg(N,C,E). -tc_arg(N,C,E):- catch(arg(N,C,E),Err, - /*unrepress_output*/((bt,fbug(tc_arg(N,C,E)=Err),((tracing->true;trace),break,arg(N,C,E))))). - - - - - - -compound_name_arg(G,MD,Goal):- var(G),!,atom(MD),G=..[MD,Goal]. -compound_name_arg(G,MD,Goal):- compound(G),!, compound_name_arguments(G,MD,[Goal]). - - -:- multifile(user:message_hook/3). -:- dynamic(user:message_hook/3). -%user:message_hook(Term, Kind, Lines):- error==Kind, itrace,fbug(user:message_hook(Term, Kind, Lines)),trace,fail. -user:message_hook(Term, Kind, Lines):- error==Kind, fbug(user:message_hook(Term, Kind, Lines)),fail. - -:- meta_predicate(must_det_ll(0)). -:- meta_predicate(must_det_ll1(1,0)). -:- meta_predicate(md_failed(1,0)). -:- meta_predicate(must_not_error(0)). -%:- meta_predicate(must_det_l(0)). - -%:- no_xdbg_flags. -:- meta_predicate(wno_must(0)). - -wno_must(G):- locally(nb_setval(no_must_det_ll,t),locally(nb_setval(cant_rrtrace,t),call(G))). - -md_maplist(_MD,_,[]):-!. -md_maplist(MD,P1,[H|T]):- call(MD,call(P1,H)), md_maplist(MD,P1,T). - -md_maplist(_MD,_,[],[]):-!. -md_maplist(MD,P2,[HA|TA],[HB|TB]):- call(MD,call(P2,HA,HB)), md_maplist(MD,P2,TA,TB). - -md_maplist(_MD,_,[],[],[]):-!. -md_maplist(MD,P3,[HA|TA],[HB|TB],[HC|TC]):- call(MD,call(P3,HA,HB,HC)), md_maplist(MD,P3,TA,TB,TC). - -%must_det_ll(G):- !, once((/*notrace*/(G)*->true;md_failed(P1,G))). - -%:- if( \+ current_predicate(must_det_ll/1)). -must_det_ll(X):- tracing,!,once(X). -must_det_ll(X):- md(once,X). -%:- endif. - -md(P1,G):- tracing,!, call(P1,G). % once((call(G)*->true;md_failed(P1,G))). -md(P1,G):- remove_must_det(MD), wraps_each(MD,P1),!,call(G). -md(P1,G):- never_rrtrace,!, call(P1,G). -md(P1,G):- /*notrace*/(arc_html),!, ignore(/*notrace*/(call(P1,G))),!. -%md(P1,X):- !,must_not_error(X). -md(P1,(X,Goal)):- is_trace_call(X),!,call((itrace,call(P1,Goal))). -md(_, X):- is_trace_call(X),!,itrace. -md(P1, X):- nb_current(no_must_det_ll,t),!,call(P1,X). -md(P1,X):- \+ callable(X), !, throw(md_not_callable(P1,X)). -md(P1,(A*->X;Y)):- !,(must_not_error(A)*->md(P1,X);md(P1,Y)). -md(P1,(A->X;Y)):- !,(must_not_error(A)->md(P1,X);md(P1,Y)). -md(P1,(X,Cut)):- (Cut==(!)),md(P1,X),!. -md(MD,maplist(P1,List)):- !, call(MD,md_maplist(MD,P1,List)). -md(MD,maplist(P2,ListA,ListB)):- !, call(MD,md_maplist(MD,P2,ListA,ListB)). -md(MD,maplist(P3,ListA,ListB,ListC)):- !, call(MD,md_maplist(MD,P3,ListA,ListB,ListC)). -md(P1,(X,Cut,Y)):- (Cut==(!)), !, (md(P1,X),!,md(P1,Y)). -md(P1,(X,Y)):- !, (md(P1,X),md(P1,Y)). -%md(P1,X):- /*notrace*/(ncatch(X,_,fail)),!. -%md(P1,X):- conjuncts_to_list(X,List),List\=[_],!,maplist(must_det_ll,List). -md(_,must_det_ll(X)):- !, must_det_ll(X). -md(_,grid_call(P2,I,O)):- !, must_grid_call(P2,I,O). -%md(P1,call(P2,I,O)):- !, must_grid_call(P2,I,O). -%md(P1,(X,Y,Z)):- !, (md(P1,X)->md(P1,Y)->md(P1,Z)). -%md(P1,(X,Y)):- !, (md(P1,X)->md(P1,Y)). -%md(P1,if_t(X,Y)):- !, if_t(must_not_error(X),md(P1,Y)). -md(P1,forall(X,Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). -md(P1,\+ (X, \+ Y)):- !, md(P1,forall(must_not_error(X),must_not_error(Y))). - -md(P1,(X;Y)):- !, ((must_not_error(X);must_not_error(Y))->true;md_failed(P1,X;Y)). -md(P1,\+ (X)):- !, (\+ must_not_error(X) -> true ; md_failed(P1,\+ X)). -%md(P1,(M:Y)):- nonvar(M), !, M:md(P1,Y). -md(P1,X):- - ncatch(must_det_ll1(P1,X), - md_failed(P1,G,N), % <- ExceptionTerm - % bubble up and start running - ((M is N -1, M>0)->throw(md_failed(P1,G,M));(ugtrace(X),throw('$aborted')))),!. -%must_det_ll(X):- must_det_ll1(P1,X),!. - -must_det_ll1(P1,X):- tracing,!,must_not_error(call(P1,X)),!. -must_det_ll1(P1,once(A)):- !, once(md(P1,A)). -must_det_ll1(P1,X):- - strip_module(X,M,P),functor(P,F,A),setup_call_cleanup(nop(trace(M:F/A,+fail)),(must_not_error(call(P1,X))*->true;md_failed(P1,X)), - nop(trace(M:F/A,-fail))),!. - -ugtrace(_):- option_value(testing,true),!, give_up(5). -ugtrace(G):- notrace,trace,rtrace(G). -%ugtrace(G):- ggtrace(G). - -%must_not_error(G):- must(once(G)). - -must_not_error(G):- (tracing;never_rrtrace),!,call(G). -must_not_error(G):- notrace(is_cgi),!, ncatch((G),E,((u_dmsg(E=G)))). -%must_not_error(X):- is_guitracer,!, call(X). -%must_not_error(G):- !, call(G). -must_not_error(X):- !,ncatch(X,E,(fbug(E=X),ugtrace(X))). -must_not_error(X):- ncatch(X,E,(rethrow_abort(E);(/*arcST,*/writeq(E=X),pp(etrace=X), - trace, - rrtrace(visible_rtrace([-all,+exception]),X)))). - -always_rethrow(E):- never_rrtrace,!,throw(E). -always_rethrow('$aborted'). -always_rethrow(md_failed(_,_,_)). - -%catch_non_abort(Goal):- cant_rrtrace(Goal). -catch_non_abort(Goal):- catch(cant_rrtrace(Goal),E,rethrow_abort(E)),!. -rethrow_abort(E):- format(user_error,'~N~q~n',[catch_non_abort_or_abort(E)]),fail. -%rethrow_abort(time_limit_exceeded):-!. -rethrow_abort('$aborted'):- !, throw('$aborted'),!,forall(between(1,700,_),sleep(0.01)),writeln(timeout),!,fail. -rethrow_abort(E):- ds,!,format(user_error,'~N~q~n',[catch_non_abort(E)]),!. - -cant_rrtrace(Goal):- never_rrtrace,!,call(Goal). -cant_rrtrace(Goal):- setup_call_cleanup(cant_rrtrace,Goal,can_rrtrace). - -main_debug:- main_thread,current_prolog_flag(debug,true). -cant_rrtrace:- nb_setval(cant_rrtrace,t). -can_rrtrace:- nb_setval(cant_rrtrace,f). -%md_failed(P1,X):- predicate_property(X,number_of_clauses(1)),clause(X,(A,B,C,Body)), (B\==!),!,must_det_ll(A),must_det_ll((B,C,Body)). -md_failed(P1,G):- never_rrtrace,!,notrace,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). -md_failed(_P1,_G):- option_value(testing,true),!,give_up(6). -md_failed(_,_):- never_rrtrace,!,fail. -md_failed(P1,G):- tracing,/*notrace*/(u_dmsg(md_failed(P1,G))),!,fail. -md_failed(P1,G):- main_debug,/*notrace*/(u_dmsg(md_failed(P1,G))),!,throw(md_failed(P1,G,2)). -md_failed(P1,G):- is_cgi,!, u_dmsg(arc_html(md_failed(P1,G))). -md_failed(P1,X):- notrace,is_guitracer,u_dmsg(failed(X))/*,arcST*/,nortrace,atrace, call(P1,X). -md_failed(P1,X):- - u_dmsg(failed(P1,X))/*,arcST*/,nortrace,atrace, - trace,visible_rtrace([-all,+fail,+call,+exception],X). -% must_det_ll(X):- must_det_ll(X),!. - -:- meta_predicate(rrtrace(0)). -rrtrace(X):- rrtrace(etrace,X). -give_up(_):- throw('$aborted'). - -is_guitracer:- getenv('DISPLAY',_), current_prolog_flag(gui_tracer,true). -:- meta_predicate(rrtrace(1,0)). -rrtrace(P1,X):- never_rrtrace,!,nop((u_dmsg(cant_rrtrace(P1,X)))),!,fail. -rrtrace(P1,G):- is_cgi,!, u_dmsg(arc_html(rrtrace(P1,G))),call(P1,G). -rrtrace(P1,X):- notrace, \+ is_guitracer,!,nortrace, /*arcST, sleep(0.5), trace,*/ - (notrace(\+ current_prolog_flag(gui_tracer,true)) -> call(P1,X); (itrace,call(P1,X))). -%rrtrace(_,X):- is_guitracer,!,notrace,nortrace,ncatch(call(call,ugtrace),_,true),atrace,call(X). -rrtrace(P1,X):- itrace,!, call(P1,X). - -:- meta_predicate(arc_wote(0)). -arc_wote(G):- with_pp(ansi,wote(G)). -arcST:- itrace,arc_wote(bts),itrace. -atrace:- arc_wote(bts). -%atrace:- ignore((stream_property(X,file_no(2)), with_output_to(X,dumpST))),!. - -:- meta_predicate(odd_failure(0)). -odd_failure(G):- never_rrtrace,!,call(G). -odd_failure(G):- wno_must(G)*->true;fail_odd_failure(G). - -:- meta_predicate(fail_odd_failure(0)). -fail_odd_failure(G):- u_dmsg(odd_failure(G)),rtrace(G), fail. -%fail_odd_failure(G):- call(G)*->true;(u_dmsg(odd_failure(G)),fail,rrtrace(G)). - - -bts:- - ensure_loaded(library(prolog_stack)), - prolog_stack:export(prolog_stack:get_prolog_backtrace_lc/3), - use_module(library(prolog_stack),[print_prolog_backtrace/2,get_prolog_backtrace_lc/3]), - /*notrace*/(prolog_stack:call(call,get_prolog_backtrace_lc,8000, Stack, [goal_depth(600)])), - stream_property(S,file_no(1)), prolog_stack:print_prolog_backtrace(S, Stack), - ignore((fail, current_output(Out), \+ stream_property(Out,file_no(1)), print_prolog_backtrace(Out, Stack))),!. - -my_assertion(G):- my_assertion(call(G),G). - -my_assertion(_,G):- call(G),!. -my_assertion(Why,G):- u_dmsg(my_assertion(Why,G)),writeq(Why=goal(G)),nl,!,ibreak. - -must_be_free(Free):- plain_var(Free),!. -must_be_free(Free):- \+ nonvar_or_ci(Free),!. -must_be_free(Nonfree):- arcST,u_dmsg(must_be_free(Nonfree)), - ignore((attvar(Nonfree),get_attrs(Nonfree,ATTS),pp(ATTS))),ibreak,fail. - -must_be_nonvar(Nonvar):- nonvar_or_ci(Nonvar),!. -must_be_nonvar(IsVar):- arcST,u_dmsg(must_be_nonvar(IsVar)),ibreak,fail. - - -% goal_expansion(must_det_l(G),I,must_det_ll(G),O):- nonvar(I),source_location(_,_), nonvar(G),I=O. - -%goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), compound(G), remove_mds(MD,G,GG),I=O. - -%:- system:ensure_loaded(library(pfc_lib)). -%:- expects_dialect(pfc). -/* -goal_expansion(Goal,Out):- compound(Goal), tc_arg(N1,Goal,E), - compound(E), E = set(Obj,Member), setarg(N1,Goal,Var), - expand_goal((Goal,b_set_dict(Member,Obj,Var)),Out). -*/ -get_setarg_p1(P3,E,Cmpd,SA):- compound(Cmpd), get_setarg_p2(P3,E,Cmpd,SA). -get_setarg_p2(P3,E,Cmpd,SA):- arg(N1,Cmpd,E), SA=call(P3,N1,Cmpd). -get_setarg_p2(P3,E,Cmpd,SA):- arg(_,Cmpd,Arg),get_setarg_p1(P3,E,Arg,SA). - -my_b_set_dict(Member,Obj,Var):- set_omemberh(b,Member,Obj,Var). -%nb_set_dict(Member,Obj,Var), -set_omemberh(_,Member,Obj,Var):- !, arc_setval(Obj,Member,Var). -%nb_link_dict(Member,Obj,Var), -%set_omemberh(nb,Member,Obj,Var):- !, nb_set_dict(Member,Obj,Var). -%set_omemberh(link,Member,Obj,Var):- !, nb_link_dict(Member,Obj,Var). -%set_omemberh(How,Member,Obj,Var):- call(call,How,Member,Obj,Var),!. - -set_omember(Member,Obj,Var):- set_omember(b,Member,Obj,Var). - -set_omember(How,Member,Obj,Var):- - must_be_nonvar(Member), must_be_nonvar(Obj), must_be_nonvar(How), !, - set_omemberh(How,Member,Obj,Var),!. - - - -get_kov(K,O,V):- dictoo:is_dot_hook(user,O,K,V),!,o_m_v(O,K,V). -get_kov(K,O,V):- ((get_kov1(K,O,V)*->true;(get_kov1(props,O,VV),get_kov1(K,VV,V)))). - -get_kov1(K,O,V):- (is_hooked_obj(O),o_m_v(O,K,V))*->true;get_kov2(K,O,V). -% (get_kov(Prop,VM,Value) -> true ; (get_kov(props,VM,Hashmap),nonvar(Hashmap),must_not_error(nb_get_value(Hashmap,Prop,ValueOOV)),get_oov_value(ValueOOV,Value))). -get_kov2(K,O,V):- is_dict(O),!,get_dict(K,O,OOV),get_oov_value(OOV,V). -get_kov2(K,O,V):- nonvar(K),is_rbtree(O),!,rb_lookup(K,V,O). -get_kov2(K,O,V):- is_rbtree(O),!,rb_in(K,V,OOV),get_oov_value(OOV,V). -%get_kov(K,O,V):- is_rbtree(O),!,nb_rb_get_node(K,O,Node),nb_rb_node_value(Node,V). - -get_oov_value(ValueOOV,Value):- compound(ValueOOV),ValueOOV=oov(Value),!. -get_oov_value(Value,Value). - - -term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,O),I\=@=O,!. -term_expansion_setter(I,O):- maybe_expand_md(must_det_ll,I,M),I\=@=M,!,term_expansion_setter(M,O). -term_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), - compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). - -term_expansion_setter((Head:-Body),Out):- - get_setarg_p1(setarg,I,Head,P1), is_setter_syntax(I,Obj,Member,Var,How), - call(P1,Var), - BodyCode = (Body, set_omember(How,Member,Obj,Var)), - % goal_expansion_setter(BodyCode,Goal), - expand_term((Head:- BodyCode),Out),!. - -%term_expansion_setter((Head:-Body),(Head:-GBody)):- goal_expansion_setter(Body,GBody),!. - -:- export(term_expansion_setter/2). -:- system:import(term_expansion_setter/2). - -%goal_expansion(Goal,'.'(Training, Objs, Obj)):- Goal = ('.'(Training, Objs, A), Obj = V), var(Obj). - -is_setter_syntax(I,_Obj,_Member,_Var,_):- \+ compound(I),!,fail. -is_setter_syntax(set(Obj,Member),Obj,Member,_Var,b). -is_setter_syntax(gset(Obj,Member),Obj,Member,_Var,nb). -is_setter_syntax(hset(How,Obj,Member),Obj,Member,_Var,How). -is_setter_syntax(set(ObjMember),Obj,Member,_Var,b):- obj_member_syntax(ObjMember,Obj,Member). -is_setter_syntax(gset(ObjMember),Obj,Member,_Var,nb):- obj_member_syntax(ObjMember,Obj,Member). -is_setter_syntax(hset(How,ObjMember),Obj,Member,_Var,How):- obj_member_syntax(ObjMember,Obj,Member). - -obj_member_syntax(ObjMember,Obj,Member):-compound(ObjMember), compound_name_arguments(ObjMember,'.',[Obj,Member]),!. - -maybe_expand_md(_MD,I,_):- \+ compound(I),!,fail. -%maybe_expand_md(MD,I,_):- compound(I),!,fail. % THIS DISABLES -% THIS DISABLES -%maybe_expand_md(MD,must_det_ll(GoalL),GoalL):-!. -maybe_expand_md(MD,MDGoal,GoalLO):- compound_name_arg(MDGoal,MD,Goal),!, expand_md(MD,Goal,GoalLO). -maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, - expand_md(MD,GoalL,GoalLO). -maybe_expand_md(MD,maplist(P1,GoalL),GoalLO):- P1 ==MD,!, - expand_md(MD,GoalL,GoalLO). -maybe_expand_md(MD,I,O):- sub_term(C,I),compound(C), compound_name_arg(C,MD,Goal), - compound(Goal),Goal=(_,_), - once((expand_md(MD,Goal,GoalO),substM(I,C,GoalO,O))),I\=@=O. - - -%maybe_expand_md(MD,I,O):- sub_term(S,I),compound(S),S=must_det_ll(G), -% once(expand_md(MD,S,M)),M\=S, - - - -expand_md(_MD,Nil,true):- Nil==[],!. -expand_md(_MD,Var,Var):- \+ callable(Var),!. -expand_md(MD,[A|B],(AA,BB)):- assertion(callable(A)), assertion(is_list(B)), !, - expand_md1(MD,A,AA), expand_md(MD,B,BB). -expand_md(MD,A,AA):- !, expand_md1(MD,A,AA). - -prevents_expansion(A):- is_trace_call(A). -is_trace_call(A):- A == trace. -is_trace_call(A):- A == itrace. - -skip_expansion(A):- var(A),!,fail. -skip_expansion(!). -skip_expansion(false). -skip_expansion(true). -skip_expansion(C):- compound(C),functor(C,F,A),skip_fa_expansion(F,A). -skip_fa_expansion(once,1). -skip_fa_expansion(call,_). -skip_fa_expansion(if_t,2). - -expand_md1(_MD,Var,Var):- \+ callable(Var),!. -expand_md1(_MD,Cut,Cut):- skip_expansion(Cut),!. -expand_md1(MD,MDAB, AABB):- compound(MDAB), compound_name_arg(MDAB,MD,AB),!, expand_md(MD,AB,AABB). -expand_md1(MD,maplist(P1,A),md_maplist(MD,P1,A)):-!. -expand_md1(MD,maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. -expand_md1(MD,maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. -expand_md1(MD,my_maplist(P1,A),md_maplist(MD,P1,A)):-!. -expand_md1(MD,my_maplist(P2,A,B),md_maplist(MD,P2,A,B)):-!. -expand_md1(MD,my_maplist(P3,A,B,C),md_maplist(MD,P3,A,B,C)):-!. -%expand_md1(MD,Goal,O):- \+ compound(Goal), !,O = must_det_ll(Goal). -%expand_md1(MD,(A,B),((A,B))):- remove_must_det(MD), prevents_expansion(A),!. -%expand_md1(MD,(A,B),must_det_ll((A,B))):- prevents_expansion(A),!. -expand_md1(MD,(A,B),(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). -expand_md1(MD,(C*->A;B),(CC*->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). -expand_md1(MD,(C->A;B),(CC->AA;BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB), expand_must_not_error(C,CC). -expand_md1(MD,(C;B),(CC;BB)):- !, expand_md(MD,B,BB), expand_must_not_error(C,CC). - -expand_md1(MD,locally(C,A),locally(C,AA)):- !, expand_md(MD,A,AA). - -expand_md1(MD,call_cleanup(A,B),call_cleanup(AA,BB)):- !, expand_md(MD,A,AA), expand_md(MD,B,BB). -expand_md1(MD,setup_call_cleanup(C,A,B),setup_call_cleanup(CC,AA,BB)):- !, - expand_md(MD,C,CC),expand_md(MD,A,AA), expand_md(MD,B,BB). - -expand_md1(MD,M:P, M:AABB):-!,expand_md(MD,P, AABB). - -expand_md1(MD,P, AABB) :- predicate_property(P,(meta_predicate( MP ))), - strip_module(P,_,SP),strip_module(MP,_,SMP), kaggle_arc_1_pred(_,SP), - \+ skippable_built_in(P), - SP=..[F|Args],SMP=..[F|Margs],!, - maplist(expand_meta_predicate_arg(MD),Margs,Args,EArgs), - AABB=..[F|EArgs]. - -expand_md1(MD, A, MDAA):- \+ remove_must_det(MD), !, expand_goal(A,AA),!,compound_name_arg(MDAA,MD,AA). -expand_md1(_MD, A, AA):- expand_goal(A,AA),!. - -expand_must_not_error(C,C):- remove_must_det(must_not_error),!. -expand_must_not_error(C,CC):- \+ predicate_property(C,meta_predicate(_)),!, CC = must_not_error(C),!. -expand_must_not_error(C,CC):- expand_md(must_not_error, C, CC). - -kaggle_arc_1_pred(M,P):- - predicate_property(M:P,file(F)), - \+ predicate_property(M:P,imported_from(_)), - \+ \+ atom_contains(F,'arc_'), - \+ atom_contains(F,'_pfc'), - \+ atom_contains(F,'_afc'), - % \+ atom_contains(F,'_ui_'), - true. - -%meta_builtin(P):- var(P),meta_builtin(P). -%meta_builtin(P):- predicate_property(P,interpreted),predicate_property(P,static). -skippable_built_in(MP):- strip_module(MP,_,P), predicate_property(system:P,built_in), - once(predicate_property(system:P,iso);predicate_property(system:P,notrace)). -%meta_builtin(P):- predicate_property(P,/*notrace*/), \+ predicate_property(P,nodebug). - -expand_meta_predicate_arg(_MD,'?',A,A):-!. -expand_meta_predicate_arg(_MD,'+',A,A):-!. -expand_meta_predicate_arg(_MD,'-',A,A):-!. -expand_meta_predicate_arg(MD, ':',A,AA):- !,expand_md1(MD,A,AA). -expand_meta_predicate_arg(MD, 0,A,AA):- !,expand_md1(MD,A,AA). -%expand_meta_predicate_arg(MD,*,A,AA):- !,expand_md1(MD,A,AA). -expand_meta_predicate_arg(_MD,_,A,A). - -goal_expansion_getter(Goal,O):- \+ compound(Goal), !,O = Goal. -goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. -goal_expansion_getter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_getter(M,O). -goal_expansion_getter(Goal,get_kov(Func,Self,Value)):- compound(Goal), - compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). -goal_expansion_getter(Goal,Out):- - compound_name_arguments(Goal,F,Args), - maplist(goal_expansion_getter,Args,ArgsOut), - compound_name_arguments(Out,F,ArgsOut). - -:- export(goal_expansion_getter/2). -:- system:import(goal_expansion_getter/2). - - -goal_expansion_setter(Goal,_):- \+ compound(Goal), !, fail. - - -goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,O),I\=@=O,!. -goal_expansion_setter(G,GO):- remove_must_det(MD), !,remove_mds(MD,G,GG),goal_expansion_setter(GG,GO). -%goal_expansion_setter(GG,GO):- remove_must_det(MD), sub_term(G,GG),compound(G),G = must_det_ll(GGGG),subst001(GG,G,GGGG,GGG),!,goal_expansion_setter(GGG,GO). -%goal_expansion_setter((G1,G2),(O1,O2)):- !, expand_goal(G1,O1), expand_goal(G2,O2),!. -goal_expansion_setter(set_omember(A,B,C,D),set_omember(A,B,C,D)):-!. -goal_expansion_setter(set_omember(A,B,C),set_omember(b,A,B,C)):-!. -goal_expansion_setter(Goal,get_kov(Func,Self,Value)):- compound(Goal), - compound_name_arguments(Goal,'.',[ Self, Func, Value]),var(Value). -goal_expansion_setter(I,O):- md_like(MD),maybe_expand_md(MD,I,M),I\=@=M,!,goal_expansion_setter(M,O). - - -goal_expansion_setter(Goal,Out):- - predicate_property(Goal,meta_predicate(_)),!,fail, - tc_arg(N1,Goal,P), goal_expansion_setter(P,MOut), - setarg(N1,Goal,MOut), !, expand_goal(Goal, Out). - -goal_expansion_setter(Goal,Out):- - tc_arg(N1,Goal,P), is_setter_syntax(P,Obj,Member,Var,How), - setarg(N1,Goal,Var), !, expand_goal((Goal,set_omember(How,Member,Obj,Var)), Out). - -goal_expansion_setter(Goal,Out):- - get_setarg_p1(setarg,I,Goal,P1), compound(I), compound_name_arguments(I,'.',[ Self, Func, Value]), - call(P1,get_kov(Func,Self,Value)),!, - expand_goal(Goal,Out). - -goal_expansion_setter(Goal,Out):- - get_setarg_p1(setarg,I,Goal,P1), is_setter_syntax(I,Obj,Member,Var,How), - call(P1,Var),!, - expand_goal((Goal,set_omember(How,Member,Obj,Var)),Out). - -:- export(goal_expansion_setter/2). -:- system:import(goal_expansion_setter/2). - - -/* -system:term_expansion((Head:-Goal),I,(Head:-Out),O):- nonvar(I), compound(Goal), - goal_expansion_setter(Goal,Out),Goal\=@=Out,I=O,!, - nop((print(goal_expansion_getter(Goal-->Out)),nl)). -*/ -arc_term_expansion1((system:term_expansion((Head:-Body),I,Out,O):- - nonvar(I), compound(Head), - term_expansion_setter((Head:-Body),Out),(Head:-Body)=In,In\==Out,I=O,!, - nop((print(term_expansion_setter(In-->Out)),nl)))). - - -%system:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, -% ((print(goal_expansion_getter(Goal-->Out)),nl)). - -%user:goal_expansion(Goal,I,Out,O):- compound(Goal),goal_expansion_getter(Goal,Out),Goal\==Out,I=O,!, -% ((print(goal_expansion_getter(Goal-->Out)),nl)). - -arc_term_expansion1((goal_expansion(Goal,I,Out,O):- - goal_expansion_setter(Goal,Out),Goal\==Out,I=O,!, - nop((print(goal_expansion_setter(Goal-->Out)),nl)))). - -:- export(arc_term_expansions/1). -arc_term_expansions(H:- (current_prolog_flag(arc_term_expansion, true), B)):- - arc_term_expansion1(H:-B). - -:- export(enable_arc_expansion/0). -enable_arc_expansion:- - forall(arc_term_expansions(Rule), - (strip_module(Rule,M,Rule0), - nop(u_dmsg(asserta_if_new(Rule,M,Rule0))), - asserta_if_new(Rule))), - set_prolog_flag(arc_term_expansion, true). - -:- export(disable_arc_expansion/0). -disable_arc_expansion:- - forall(arc_term_expansions(Rule),forall(retract(Rule),true)), - set_prolog_flag(arc_term_expansion, false). - -:- multifile(goal_expansion/4). -:- dynamic(goal_expansion/4). - -goal_expansion(G,I,GG,O):- nonvar(I),source_location(_,_), - compound(G), - (remove_must_det(MD)->remove_mds(MD,G,GG);(md_like(MD),maybe_expand_md(MD,G,GG))),I=O. - - - - - - - - - - - -/* -:- export(plain_var/1). -plain_var(V):- notrace((var(V), \+ attvar(V), \+ get_attr(V,ci,_))). - -my_assertion(G):- call(G),!. -my_assertion(G):- fbug(my_assertion(G)),writeq(goal(G)),nl,!,break. -must_be_free(AllNew):- plain_var(AllNew),!. -must_be_free(AllNew):- arcST,fbug(must_be_free(AllNew)),break,fail. -must_be_nonvar(AllNew):- nonvar_or_ci(AllNew),!. -must_be_nonvar(AllNew):- arcST,fbug(must_be_nonvar(AllNew)),break,fail. - -my_len(X,Y):- var(X),!,length(X,Y). -my_len(X,Y):- is_list(X),!,length(X,Y). -my_len(X,Y):- functor([_|_],F,A),functor(X,F,A),!,length(X,Y). -my_len(X,Y):- arcST,!,ibreak. -*/ -is_map(G):- is_vm_map(G),!. -%arc_webui:- false. -sort_safe(I,O):- catch(sort(I,O),_,I=O). -my_append(A,B):- append(A,B). -my_append(A,B,C):- append(A,B,C). -with_tty_false(Goal):- with_set_stream(current_output,tty(false),Goal). -with_tty_true(Goal):- with_set_stream(current_output,tty(true),Goal). - -% Count occurrences of G and store the result in N -count_of(G,N):- findall_vset(G,G,S),length(S,N). -findall_vset(T,G,S):- findall(T,G,L),variant_list_to_set(L,S). -flatten_objects(Objs,ObjsO):- flatten([Objs],ObjsO),!. - - -var_e(E,S):- E==S,!. -var_e(E,S):- (nonvar(E);attvar(E)),!,E=@=S. - -variant_list_to_set([E|List],Out):- select(S,List,Rest),var_e(E,S),!, variant_list_to_set([E|Rest],Out). -variant_list_to_set([E|List],[E|Out]):- !, variant_list_to_set(List,Out). -variant_list_to_set(H,H). - -nb_subst(Obj,New,Old):- - get_setarg_p1(nb_setarg,Found,Obj,P1),Found=@=Old, - p1_call(P1,New),!,nb_subst(Obj,New,Old). -nb_subst(_Obj,_New,_Old). - -system:any_arc_files(Some):- is_list(Some),!, Some\==[],maplist(any_arc_files,Some). -system:any_arc_files(Some):- atom_contains(Some,'arc'). - -:- thread_local(in_memo_cached/5). -:- multifile(prolog:make_hook/2). -:- dynamic(prolog:make_hook/2). -prolog:make_hook(before, Some):- any_arc_files(Some), forall(muarc:clear_all_caches,true). - -:- multifile(muarc:clear_all_caches/0). -:- dynamic(muarc:clear_all_caches/0). -muarc:clear_all_caches:- \+ luser_getval(extreme_caching,true), retractall(in_memo_cached(_,_,_,_,_)), fail. -%arc_memoized(G):- !, call(G). - -arc_memoized(G):- compound(G),ground(G),functor(G,F,1),functor(C,F,1),!,arc_memoized(C),G=C,!. -arc_memoized(G):- - copy_term(G,C,GT), - (Key = (C+GT)), - (in_memo_cached(Key,C,track,started,Info)->throw(already_memoizing(in_memo_cached(Key,C,track,started,Info))) ; true), - numbervars(Key,0,_,[attvar(bind),singletons(true)]),!, - setup_call_cleanup((asserta(in_memo_cached(Key,C,track,started,_),Started)), - catch( - (in_memo_cached(Key,C,GT,Found,AttGoals)*->(G=Found,maplist(call,AttGoals)) - ; ((call(G),copy_term(G,CG,GG)) *->asserta(in_memo_cached(Key,C,GT,CG,GG)) - ;asserta(in_memo_cached(Key,C,GT,failed,_)))), - E, (retractall(in_memo_cached(Key,C,GT,_,_)),throw(E))),erase(Started)). - -set_nth1(1,[_|Row],E,[E|Row]):-!. -set_nth1(N,[W|Row],E,[W|RowMod]):- Nm1 is N-1, set_nth1(Nm1,Row,E,RowMod). - -findall_count(T,G,N):- findall_set(T,G,S),length(S,N). - -findall_set(T,G,S):- findall(T,G,L),list_to_set(L,S). - -make_list_inited(0,_,[]):-!. -make_list_inited(1,E,[E]):-!. -make_list_inited(N,E,[E|List]):- Nm1 is N -1,make_list_inited(Nm1,E,List). - -nth_fact(P,I):- clause(P,true,Ref),nth_clause(P,I,Ref). - -nonvar_or_ci(C):- (nonvar(C);attvar(C)),!. - -add_i(Info):- - quietly((tersify(Info,InfoT), - luser_getval(test_rules,TRules), - luser_getval(pair_rules,PRules), - nb_set_add(TRules,InfoT), - nb_set_add(PRules,InfoT), - nop(pp(cyan,+InfoT)))). - -add_i(F,Info):- - append_term(i(F),Info,FInfo), - add_i(FInfo). - -add_rule(Info):- add_i(rule,Info). -add_cond(Info):- add_i(cond,Info). -%do_action(Info):- guess_pretty(Info),add_i(action,Info),call(Info). -do_action(Call):- !, copy_term(Call,Info),call(Call),add_i(action,Info). -add_action(Info):- add_i(action,Info). -add_note(Info):- add_i(note,Info). -add_indiv(W,Info):- add_i(indiv(W),Info). -add_comparitor(Info):- add_i(comparitor,Info). -show_rules:- - luser_getval(pair_rules,PRules), maplist(pp(cyan),PRules), - luser_getval(test_rules,TRules), maplist(pp(blue),TRules), - !. - - -sub_atom_value(TestID,A):- sub_term(A,TestID),(atom(A);string(A)). - -my_list_to_set(List, Set):- my_list_to_set(List, (=) ,Set). -my_list_to_set_variant(List, Set):- my_list_to_set(List, (=@=) ,Set). -my_list_to_set_cmp(List, Set):- my_list_to_set(List, (=@=) ,Set). - -my_list_to_set([E|List],P2, Set):- select(C,List,Rest), p2_call(P2, E,C), !, my_list_to_set([E|Rest],P2, Set). -my_list_to_set([E|List],P2, [E|Set]):-!, my_list_to_set(List,P2, Set). -my_list_to_set([],_,[]). - -my_list_to_set_cmp([E|List],C3, Set):- select(C,List,Rest), call(C3,R,E,C), - R== (=), my_list_to_set_cmp([C|Rest],C3, Set),!. - my_list_to_set_cmp([E|List],C3, [E|Set]):-!, my_list_to_set_cmp(List,C3, Set). -my_list_to_set_cmp([],_,[]). - - -contains_nonvar(N,Info):- sub_term(E,Info),nonvar_or_ci(E),E=N,!. - -max_min(A,B,C,D):- must_be_free(C),must_be_free(D),max_min0(A,B,C,D). -max_min0(A,B,B,B):- plain_var(A). -max_min0(A,B,A,A):- plain_var(B),!. -max_min0(A,B,C,D):- number(A),number(B), !, ((A > B) -> (C=A, D=B) ; (C=B, D=A)). -max_min0(_,A,A,A):- number(A),!. -max_min0(A,_,A,A):- number(A),!. -max_min0(_,_,_,_). - -as_debug(L,G):- as_debug(L,true,G). -as_debug(9,_,_):- !. -as_debug(_,C,G):- ignore(catch((call(C)->wots(S,G),format('~NDEBUG: ~w~N',[S]);true),_,true)). - -shall_count_as_same(A,B):- same_term(A,B),!. % unify ok_ok cmatch -shall_count_as_same(A,B):- plain_var(A),!,A==B. -shall_count_as_same(A,B):- atomic(A),!, A=@=B. -shall_count_as_same(A,B):- var(B),!,A=@=B. -shall_count_as_same(A,B):- A=@=B,!. -shall_count_as_same(A,B):- copy_term(B,CB),copy_term(A,CA),\+ \+ ( A=B, B=@=CB, A=@=CA),!. -%shall_count_as_same(A,B):- \+ A \= B, !. - -count_each([C|L],GC,[Len-C|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),!,count_each(L,GC,LL). -count_each([],_,[]). - -count_each_inv([C|L],GC,[C-Len|LL]):- include(shall_count_as_same(C),GC,Lst),length(Lst,Len),count_each_inv(L,GC,LL). -count_each_inv([],_,[]). - -maplist_n(N,P,[H1|T1]):- - p2_call(P,N,H1), N1 is N+1, - maplist_n(N1,P,T1). -maplist_n(_N,_P,[]). - -maplist_n(N,P,[H1|T1],[H2|T2]):- - call(P,N,H1,H2), N1 is N+1, - maplist_n(N1,P,T1,T2). -maplist_n(_N,_P,[],[]). - -/* -print_points_grid(Points):- - points_range(Points, LoH, LoV, HiH, HiV, H, V), writeqln(size_range(LoH, LoV, HiH, HiV, H, V)), points_to_grid(Points, Grid), print_grid(Grid). - -print_points_grid(Grid):- - points_range(Grid, LoH, LoV, HiH, HiV, _H, _V), print_grid(Grid, LoH, LoV, HiH, HiV, Grid). -*/ - - -%print_trainer:- kaggle_arc_train(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). -%print_evaler:- kaggle_arc_eval(Name, Stuff), atom_json_term(Stuff, JSON, []), print_arc(Name, JSON). - - /* -% data looks like - -kaggle_arc_train('007bbfb7', trn, [[0, 7, 7], [7, 7, 7], [0, 7, 7]], [[0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [7, 7, 7, 7, 7, 7, 7, 7, 7], [0, 7, 7,0, 7, 7,0, 7, 7], [0,0,0,0, 7, 7,0, 7, 7], [0,0,0, 7, 7, 7, 7, 7, 7], [0,0,0,0, 7, 7,0, 7, 7]]). -kaggle_arc_train('007bbfb7', trn, [[4,0, 4], [0,0,0], [0, 4,0]], [[4,0, 4,0,0,0, 4,0, 4], [0,0,0,0,0,0,0,0,0], [0, 4,0,0,0,0,0, 4,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 4,0, 4,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 4,0,0,0,0]]). -kaggle_arc_train('007bbfb7', trn, [[0,0,0], [0,0, 2], [2,0, 2]], [[0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 2], [0,0,0,0,0,0, 2,0, 2], [0,0,0,0,0,0,0,0,0], [0,0, 2,0,0,0,0,0, 2], [2,0, 2,0,0,0, 2,0, 2]]). -kaggle_arc_train('007bbfb7', trn, [[6, 6,0], [6,0,0], [0, 6, 6]], [[6, 6,0, 6, 6,0,0,0,0], [6,0,0, 6,0,0,0,0,0], [0, 6, 6,0, 6, 6,0,0,0], [6, 6,0,0,0,0,0,0,0], [6,0,0,0,0,0,0,0,0], [0, 6, 6,0,0,0,0,0,0], [0,0,0, 6, 6,0, 6, 6,0], [0,0,0, 6,0,0, 6,0,0], [0,0,0,0, 6, 6,0, 6, 6]]). -kaggle_arc_train('007bbfb7', trn, [[2, 2, 2], [0,0,0], [0, 2, 2]], [[2, 2, 2, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0, 2, 2,0, 2, 2,0, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0], [0,0,0, 2, 2, 2, 2, 2, 2], [0,0,0,0,0,0,0,0,0], [0,0,0,0, 2, 2,0, 2, 2]]). -kaggle_arc_train('007bbfb7', tst, [[7,0, 7], [7,0, 7], [7, 7,0]], [[7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7,0,0,0, 7,0, 7], [7,0, 7,0,0,0, 7,0, 7], [7, 7,0,0,0,0, 7, 7,0], [7,0, 7, 7,0, 7,0,0,0], [7,0, 7, 7,0, 7,0,0,0], [7, 7,0, 7, 7,0,0,0,0]]). - -kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3,0, 3,0,0], [0,0, 3,0, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]], [[0,0,0,0,0,0], [0,0, 3,0,0,0], [0, 3, 4, 3,0,0], [0,0, 3, 4, 3,0], [0,0,0, 3,0,0], [0,0,0,0,0,0]]). -kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3,0, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0,0,0,0,0], [0,0,0, 3,0, 3,0,0,0,0], [0,0, 3,0,0,0, 3,0,0,0], [0,0,0,0,0, 3, 4, 3,0,0], [0,0,0, 3,0, 3, 3,0,0,0], [0,0, 3, 3, 3,0,0,0,0,0], [0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0]]). -kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3,0,0, 3,0, 3,0], [0,0,0, 3,0,0, 3, 3,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0, 3,0,0, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0,0,0], [0, 3, 3,0, 3, 3,0, 3,0,0], [3,0,0, 3, 4, 4, 3, 4, 3,0], [0,0,0, 3, 4, 4, 3, 3,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0, 3, 4, 4, 3,0,0,0], [0,0,0,0, 3, 3,0, 3,0,0], [0,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0,0,0]]). -kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3,0,0, 3,0,0,0,0], [0,0, 3,0,0, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3,0, 3], [0,0,0, 3,0, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0], [0,0, 3, 3, 3, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0,0,0,0], [0,0, 3, 4, 4, 3,0, 3,0,0], [0,0, 3, 3, 3, 3, 3, 3, 3,0], [0,0,0, 3,0,0,0,0, 3,0], [0,0,0, 3,0,0,0, 3, 3,0], [0,0,0, 3, 3,0,0, 3, 4, 3], [0,0,0, 3, 4, 3,0,0, 3,0], [0,0,0,0, 3,0,0,0,0,0]]). -kaggle_arc_train('00d62c1b', trn, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0,0, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 3,0,0,0,0,0,0,0, 3,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0, 3,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 4, 4, 4, 4, 4, 4, 3,0,0,0,0], [0,0, 3,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 3, 3,0,0,0,0], [0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3,0,0,0,0, 3,0, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 4, 3,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 3, 3,0,0, 3,0,0, 3,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0, 3, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). -kaggle_arc_train('00d62c1b', tst, [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3,0,0,0,0, 3,0,0, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3,0,0,0, 3,0,0], [0,0,0,0,0,0, 3, 3,0, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3,0,0,0, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]], [[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3, 3, 3, 3, 3,0, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0, 3, 4, 4, 4, 4, 3, 4, 4, 3,0,0,0,0,0,0,0], [0,0,0,0, 3, 3, 3, 3, 3,0, 3, 3, 3,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0,0, 3, 4, 4, 4, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0,0,0, 3, 3, 3, 3, 3, 3, 4, 4, 4, 3,0,0], [0,0,0,0,0,0, 3, 3, 4, 3,0,0,0, 3, 3, 3, 3, 3,0,0], [0,0, 3,0,0,0,0,0, 3, 3,0,0,0,0,0,0,0,0,0,0], [0, 3, 4, 3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], [0,0, 3,0, 3,0, 3, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 4, 4, 4, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0, 3, 3, 3, 3, 3,0,0,0,0,0,0,0,0], [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]). -*/ -%tell(s), ignore((nl, nl, task_pairs(Name, ExampleNum, In, Out), format('~N~q.~n', [test_pairs_cache(Name, ExampleNum, In, Out)]), fail)), told. -map_pred(Pred, P, X) :- map_pred([],Pred, P, X). -%map_pred(NoCycles,_Pred, P, X) :- member(E,NoCycles), E==P,!, X = P. -map_pred(NoCycles,Pred, P, X) :- p2_call(Pred, P, X)*->true;map_pred0(NoCycles,Pred, P, X). - -map_pred1(Pred, P, P1) :- map_pred1(P, Pred, P, P1). - -map_pred0(_NoCycles,_Pred, Args, ArgSO) :- must_be_free(ArgSO), Args==[],!, ArgSO=[]. -map_pred0(_NoCycles, Pred, P, P1) :- p2_call(Pred, P, P1),!. % *->true;fail. -map_pred0(NoCycles,Pred, P, X) :- fail, attvar(P), !, %duplicate_term(P,X),P=X, - get_attrs(P,VS), map_pred([P|NoCycles],Pred, VS, VSX), P=X, put_attrs(X,VSX),!. -map_pred0(NoCycles,Pred, P, X):- map_pred1(NoCycles,Pred, P, X). - -map_pred1(_NoCycles,_Pred, P, P1) :- ( \+ compound(P) ; is_ftVar(P)), !, must_det_ll(P1=P), !. -% map_pred0(NoCycles,Pred, Args, ArgSO) :- is_list(Args), !, maplist(map_pred([Args|NoCycles],Pred), Args, ArgS), ArgS=ArgSO. -map_pred1(NoCycles,Pred, IO, OO) :- is_list(IO),!, maplist(map_pred(NoCycles,Pred), IO, OO). -map_pred1(NoCycles,Pred, IO, [O|ArgS]) :- IO= [I|Args], !, - map_pred([IO,ArgS|NoCycles],Pred, I, O), map_pred0([IO,I|NoCycles],Pred, Args, ArgS). -map_pred1(NoCycles,Pred, P, P1) :- - compound_name_arguments(P, F, Args), maplist(map_pred([P|NoCycles],Pred),Args,ArgS), compound_name_arguments(P1, F, ArgS). -%map_pred(_Pred, P, P). -/* -:- meta_predicate map_pred(2, ?, ?, ?, ?). -map_pred(Pred, P, X, Sk, P1) :- must_be_free(X), p2_call(Pred, P, X), !, must(Sk=P1), !. -map_pred(_Pred, P, _, _, P1) :- is_ftVar(P), !, must(P1=P), !. -map_pred(Pred, [P|Args], X, Sk, [P1|ArgS]) :- !, map_pred(Pred, P, X, Sk, P1), !, must(map_pred(Pred, Args, X, Sk, ArgS)), !. -map_pred(Pred, P, X, Sk, P1) :- compound(P), !, compound_name_arguments(P, F, Args), map_pred(Pred, [F|Args], X, Sk, [Fs|ArgS]), !, compound_name_arguments(P1, Fs, ArgS), !. -map_pred(_Pred, P, _, _, P). -*/ -is_cons(A):- compound(A),A=[_|_]. - -into_grid_or_var(G,G):- is_cons(G),!. -into_grid_or_var(G,G):- var(G),!. -into_grid_or_var(O,G):- cast_to_grid(O,G,_Uncast),!. - -maybe_mapgrid(P2,I,O):- is_grid(I),!,mapgrid(P2,I,O). -maybe_mapgrid(P3,I,O,M):- is_grid(I),!,mapgrid(P3,I,O,M). -maybe_mapgrid(P4,I,O,M,N):- is_grid(I),!,mapgrid(P4,I,O,M,N). - -mapgrid(P4,Grid,GridM,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridM,G2),into_grid_or_var(GridN,G3),into_grid_or_var(GridO,G4),mapg_list(P4,G1,G2,G3,G4). -mapg_list(P4,Grid,GridM,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P4),Grid,GridM,GridN,GridO). -mapg_list(P4,Grid,GridM,GridN,GridO):- call(P4,Grid,GridM,GridN,GridO),!. - -mapgrid(P3,Grid,GridN,GridO):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),into_grid_or_var(GridO,G3),mapg_list(P3,G1,G2,G3). -mapg_list(P3,Grid,GridN,GridO):- is_list(Grid),!,maplist(mapg_list(P3),Grid,GridN,GridO). -mapg_list(P3,Grid,GridN,GridO):- call(P3,Grid,GridN,GridO),!. - -mapgrid(P2, Grid,GridN):- into_grid_or_var(Grid,G1),into_grid_or_var(GridN,G2),!,mapg_list(P2, G1,G2). -mapg_list(P2, Grid,GridN):- is_list(Grid),!,maplist(mapg_list(P2),Grid,GridN). -mapg_list(P2, Grid,GridN):- p2_call(P2, Grid,GridN),!. - -mapgrid(P1,Grid):- into_grid_or_var(Grid,G1),mapg_list(P1,G1). -mapg_list(P1,Grid):- is_list(Grid),!,maplist(mapg_list(P1),Grid). -mapg_list(P1,Grid):- p1_call(P1,Grid),!. - - -maplist_ignore(_3,H,I,J):- (H==[];I==[],J==[]),!,(ignore(H=[]),ignore(I=[]),ignore(J=[])). -maplist_ignore(P3,H,I,J):- \+ is_list(H),!, ignore(p2_call(call(P3,H),I,J)). -maplist_ignore(P3,[H|Grid],[I|GridN],[J|GridO]):- maplist_ignore(P3,H,I,J), !,maplist_ignore(P3,Grid,GridN,GridO). - -maplist_ignore(_2,H,I):- (H==[];I==[]),!,(ignore(H=[]),ignore(I=[])). -maplist_ignore(P2, H,I):- \+ is_list(H),!, ignore(p2_call(P2, H,I)). -maplist_ignore(P2, [H|Grid],[I|GridN]):- maplist_ignore(P2, H,I), !,maplist_ignore(P2, Grid,GridN). - -%p1_or(P1,Q1,E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). - -p1_call((P1;Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). -p1_call((P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). -p1_call(or(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E);p1_call(Q1,E)). -p1_call(and(P1,Q1),E):- must_be(callable,P1),!, (p1_call(P1,E),p1_call(Q1,E)). -p1_call(not(not(P1)),E):- !, \+ \+ p1_call(P1,E). -p1_call(not(P1),E):- !, not(p1_call(P1,E)). -p1_call(once(P1),E):- !, once(p1_call(P1,E)). -p1_call(ignore(P1),E):- !, ignore(p1_call(P1,E)). -p1_call(chk(P1),E):- !, \+ \+ (p1_call(P1,E)). -p1_call( \+ (P1),E):- !, \+ p1_call(P1,E). -p1_call(P1,E):- !, call(P1,E). - -chk(X,E):- \+ \+ call(X,E). - -p2_call_p2(P2a,P2b,A,B):- p2_call(P2a,A,M),p2_call(P2b,M,B). - -p2_call(P2,A,B):- P2==[],!,A=B. -p2_call(p1_call(P1),E,O):- !, p1_call(P1,E), E=O. -p2_call([P2],Grid,GridN):- !, p2_call(P2, Grid,GridN). -p2_call([P2|P2L],Grid,GridN):- !, p2_call(P2, Grid,GridM),p2_call(P2L,GridM,GridN). -p2_call(ignore(P2),A,B):- p2_call(P2,A,B)*->true;A=B. -p2_call(type(Type,P2),A,B):- into_type(Type,A,AA),p2_call(P2,AA,B). -p2_call(or(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,B);p2_call(Q2,A,B)). -p2_call(and(P2,Q2),A,B):- nop(must_be(callable,P2)),!, (p2_call(P2,A,AB),p2_call(Q2,AB,B)). -p2_call(P2,A,B):- must_be(callable,P2), call(P2,A,B). - - -p1_or(P1A,P1B,X):- p1_call(P1A,X)->true;p1_call(P1B,X). -p1_and(P1A,P1B,X):- p1_call(P1A,X),p1_call(P1B,X). -p1_not(P1,E):- \+ p1_call(P1,E). -p1_ignore(P1,E):- ignore(p1_call(P1,E)). -p1_arg(N,P1,E):- tc_arg(N,E,Arg),p1_call(P1,Arg). -p1_subterm(P1,E):- sub_term(Arg,E),p1_call(P1,Arg). - -:- meta_predicate my_partition(-, ?, ?, ?). -my_partition(_,[],[],[]):-!. -my_partition(P1,[H|L],[H|I],E):- \+ \+ p1_call(P1,H),!, - my_partition(P1,L,I,E). -my_partition(P1,[H|L],I,[H|E]):- - my_partition(P1,L,I,E),!. -my_partition(P1,H,I,HE):- arcST,ibreak, - my_partition(P1,[H],I,HE). - - -mapgroup(P2,G1,L2):- into_list(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). -mapgroup(P1,G1):- into_list(G1,L1), !, with_my_group(L1,maplist(P1,L1)). - -selected_group(Grp):- nb_current('$outer_group',Grp),!. -selected_group([]). - -sub_cmpd(_, LF) :- \+ compound(LF), !, fail. -sub_cmpd(X, X). -sub_cmpd(X, Term) :- - ( is_list(Term) - -> member(E, Term), - sub_cmpd(X, E) - ; tc_arg(_, Term, Arg), - sub_cmpd(X, Arg) - ). - - - -%with_my_group([O|Grp],Goal):- compound(O),O=obj(_),!, locally(nb_setval('$outer_group',[O|Grp]),Goal). -with_my_group(_,Goal):- call(Goal). - -into_mlist(L,L). -my_maplist(P4,G1,L2,L3,L4):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P4,L1,L2,L3,L4)). -my_maplist(P3,G1,L2,L3):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P3,L1,L2,L3)). -my_maplist(P2,G1,L2):- into_mlist(G1,L1),!, with_my_group(L1,maplist(P2,L1,L2)). -my_maplist(P1,G1):- into_mlist(G1,L1), !, with_my_group(L1,maplist(P1,L1)). - - -my_include(P1,L,I):- include(p1_call(P1),L,I). -%my_include(P1,[H|L],O):- (p2_call(p1_call(P1),H,HH)*->(my_include(P1,L,I),O=[HH|I]);my_include(P1,L,O)). -my_include(_,_,[]). - -%my_exclude(P1,I,O):- my_include(not(P1),I,O). -my_exclude(P1,I,O):- my_partition(P1,I,_,O). - - -subst_1L([],Term,Term):-!. -subst_1L([X-Y|List], Term, NewTerm ) :- - subst0011(X, Y, Term, MTerm ), - subst_1L(List, MTerm, NewTerm ). - -subst_2L([],_,I,I). -subst_2L([F|FF],[R|RR],I,O):- subst0011(F,R,I,M),subst_2L(FF,RR,M,O). - - -subst001(I,F,R,O):- subst0011(F,R,I,O),!. - - -subst0011(X, Y, Term, NewTerm ) :- - copy_term((X,Y,Term),(CX,CY,Copy),Goals), - (Goals==[] - ->subst0011a( X, Y, Term, NewTerm ) - ;(subst0011a(CX, CY, Goals, NewGoals), - (NewGoals==Goals -> - subst0011a( X, Y, Term, NewTerm ) - ; (subst0011a(CX, CY, Copy, NewCopy), - NewTerm = NewCopy, maplist(call,NewGoals))))). - - - -subst0011a(X, Y, Term, NewTerm ) :- - ((X==Term)-> Y=NewTerm ; - (is_list(Term)-> maplist(subst0011a(X, Y), Term, NewTerm ); - (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; - ((compound_name_arguments(Term, F, Args), - maplist(subst0011a(X, Y), Args, ArgsNew), - compound_name_arguments( NewTerm, F, ArgsNew )))))),!. - -subst001C(I,F,R,O):- subst001_p2(same_term,I,F,R,O),!. -subst0011C(F,R,I,O):- subst0011_p2(same_term,F,R,I,O),!. -subst_2LC(F,R,I,O):- subst_2L_p2(same_term,F,R,I,O). - -subst_2L_p2(_P2, [],_,I,I):-!. -subst_2L_p2(_P2, _,[],I,I):-!. -subst_2L_p2(P2, [F|FF],[R|RR],I,O):- subst0011_p2(P2, F,R,I,M),subst_2L_p2(P2, FF,RR,M,O). - -subst001_p2(P2, I,F,R,O):- subst0011_p2(P2, F,R,I,O),!. - -subst_1L_p2(_, [],Term,Term):-!. -subst_1L_p2(P2, [X-Y|List], Term, NewTerm ) :- - subst0011_p2(P2, X, Y, Term, MTerm ), - subst_1L_p2(P2, List, MTerm, NewTerm ). - -subst0011_p2(P2, X, Y, Term, NewTerm ) :- - copy_term((X,Y,Term),(CX,CY,Copy),Goals), - (Goals==[] - ->subst0011a_p2(P2, X, Y, Term, NewTerm ) - ;(subst0011a_p2(P2, CX, CY, Goals, NewGoals), - (NewGoals==Goals -> - subst0011a_p2(P2, X, Y, Term, NewTerm ) - ; (subst0011a_p2(P2, CX, CY, Copy, NewCopy), - NewTerm = NewCopy, maplist(call,NewGoals))))). - -subst0011a_p2(P2, X, Y, Term, NewTerm ) :- - (p2_call(P2,X,Term)-> Y=NewTerm ; - (is_list(Term)-> maplist(subst0011a_p2(P2, X, Y), Term, NewTerm ); - (( \+ compound(Term); Term='$VAR'(_))->Term=NewTerm; - ((compound_name_arguments(Term, F, Args), - maplist(subst0011a_p2(P2, X, Y), Args, ArgsNew), - compound_name_arguments( NewTerm, F, ArgsNew )))))),!. - - - -ppa(FF):- - copy_term(FF,FA,GF), - numbervars(FA+GF,0,_,[attvar(bind),singletons(true)]), - sort_safe(GF,GS),write(' '), - locally(b_setval(arc_can_portray,nil), - ppawt(FA)),format('~N'), - ignore((GS\==[], format('\t'),ppawt(attvars=GS),nl)),nl,!. - -ppawt(FA):- - write_term(FA,[numbervars(false), quoted(true), - character_escapes(true),cycles(true),dotlists(false),no_lists(false), - blobs(portray),attributes(dots), - portray(true), partial(false), fullstop(true), - %portray(false), partial(true), fullstop(true), - ignore_ops(false), quoted(true), quote_non_ascii(true), brace_terms(false)]). - -intersection(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- - intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB),!. - -same_univ(A,B):- (plain_var(A)->A==B;(B=@=A->true; (fail, \+ (A \=B )))). - -intersection_univ(APoints,BPoints,Intersected):- - intersection_univ(APoints,BPoints,Intersected,_,_),!. -intersection_univ(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- - pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). - -intersection_eq(APoints,BPoints,Intersected):- - intersection_eq(APoints,BPoints,Intersected,_,_),!. -intersection_eq(APoints,BPoints,Intersected,LeftOverA,LeftOverB):- - pred_intersection(same_univ,APoints,BPoints,Intersected,_,LeftOverA,LeftOverB). - -/* -intersection_u([],LeftOverB,[],[],LeftOverB):-!. -intersection_u(LeftOverA,[],[],LeftOverA,[]):-!. -intersection_u([A|APoints],BPoints,[A|Intersected],LeftOverA,LeftOverB):- - select(A,BPoints,BPointsMinusA),!, - intersection_u(APoints,BPointsMinusA,Intersected,LeftOverA,LeftOverB). -intersection_u([A|APoints],BPoints,Intersected,[A|LeftOverA],LeftOverB):- - intersection_u(APoints,BPoints,Intersected,LeftOverA,LeftOverB). -*/ - -:- meta_predicate(each_obj(?,?,0)). -each_obj([],_,_):-!. -each_obj([Obj|List],Obj,Goal):- ignore(Goal), each_obj(List,Obj,Goal). - -pred_intersection(_P2, [],LeftOverB, [],[], [],LeftOverB):-!. -pred_intersection(_P2, LeftOverA,[], [],[], LeftOverA,[]):-!. -pred_intersection(P2, [A|APoints],BPoints,[A|IntersectedA],[B|IntersectedB],LeftOverA,LeftOverB):- - select(B,BPoints,BPointsMinusA), - \+ \+ p2_call(P2, A,B),!, - pred_intersection(P2, APoints,BPointsMinusA,IntersectedA,IntersectedB,LeftOverA,LeftOverB). -pred_intersection(P2, [A|APoints],BPoints,IntersectedA,IntersectedB,[A|LeftOverA],LeftOverB):- - pred_intersection(P2, APoints,BPoints,IntersectedA,IntersectedB,LeftOverA,LeftOverB). - - - - - - - - - - - - - - - - - - - -pp(PP):-pp_m(PP). -pp(Color,PP):- ansi_format([fg(Color)],'~@',[pp(PP)]). - - -warn_skip(P):- pp(warn_skip(P)). - -with_set_stream(_,_,G):- call(G). - -fake_impl(M:F/A):- functor(P,F,A), asserta((M:P :- !, fail)). -fake_impl(F/A):- functor(P,F,A), asserta((P :- !, fail)). - - -:- fake_impl(arc_setval/3). -:- fake_impl(cast_to_grid/3). -:- fake_impl(dot_cfg:dictoo_decl/8). -:- fake_impl(get_param_sess/2). -:- fake_impl(into_list/2). -:- fake_impl(into_type/3). -:- fake_impl(is_grid/1). -:- fake_impl(is_hooked_obj/1). -:- fake_impl(is_vm_map/1). -:- fake_impl(ld_logicmoo_webui/0). -:- fake_impl(must_grid_call/3). -:- fake_impl(o_m_v/3). -:- fake_impl(quick_test/1). -:- fake_impl(url_decode_term/2). -:- fake_impl(xlisting_web:find_http_session/1). -:- fake_impl(xlisting_web:is_cgi_stream/0). - - -end_of_file. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -:- encoding(iso_latin_1). -/* - this is part of (H)MUARC https://logicmoo.org/xwiki/bin/view/Main/ARC/ - - This work may not be copied and used by anyone other than the author Douglas Miles - unless permission or license is granted (contact at business@logicmoo.org) -*/ - - -:- meta_predicate(print_grid(+,+,+,+)). -:- meta_predicate(print_grid(+,+,+)). - - -%:- autoload(library(http/html_write),[html/3,print_html/1]). - -is_debugging(M):- \+ \+ debugging(M),!. -%is_debugging(_):- menu_or_upper('B'). - -debug_m(_,Tiny):- display_length(Tiny,Len),Len<30,!,pp(Tiny). -debug_m(M,_):- \+ is_debugging(M),!. -%debug_m(_,List):- is_list(List),!,print_ss(List). -debug_m(_,Term):- pp(Term). -debug_c(M,_):- \+ is_debugging(M),!. -debug_c(_,C):- call(C),!. -debug_c(M,C):- wots_hs(S,C),debug_m(M,S),!. - -:- meta_predicate(wno(0)). -wno(G):- - locally(b_setval(print_collapsed,10), G). - -:- meta_predicate(print_collapsed(0)). -print_collapsed(Size,G):- - locally(b_setval(print_collapsed,Size), print_collapsed0(Size,G)). - -:- meta_predicate(print_collapsed0(0)). -print_collapsed0(Size,G):- Size<10, !, call(G). -% print_collapsed(Size,G):- call(G). -print_collapsed0(Size,G):- Size>=10, !, wots_hs(_S,G). -print_collapsed0(_,G):- wots_vs(S,G),write(S). - -tersify(I,O):- tracing,!,I=O. -%tersify(I,O):- term_variables(I,Vs), \+ ( member(V,Vs), attvar(V)),!,I=O. -tersify(I,O):- tersify23(I,O),!. -tersify(X,X):-!. - -tersify23(I,O):- quietly((tersify2(I,M),tersify3(M,O))),!. - -%srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). -%srw_arc(I,O):- compound(I),!, wots_hs(O,(write(ppt(I)))). -/* -srw_arc(I,O):- is_grid(I),!, wots_hs(O,(write('"'),print_grid(I),write('"'))). -*/ -srw_arc(I,O):- is_vm_map(I),!, O='..vvmm..'. -srw_arc(I,O):- is_grid(I),!, O='..grid..'. -/* -srw_arc(List,O):- current_prolog_flag(dmsg_len,Three), - is_list(List),length(List,L),L>Three, - append([A,B,C],[F|_],List),F \='...'(_), !, - simplify_goal_printed([A,B,C,'....'(L>Three)],O). -*/ -%srw_arc(gridFn(_),gridFn):-!. -%srw_arc(I,O):- is_points_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. -%srw_arc(I,O):- is_list(I), length(I,N),N>10,!,O='..lo_points..'(N),!. -srw_arc(I,O):- tersify(I,O),!,I\==O,!. - -:- multifile(dumpst_hook:simple_rewrite/2). -:- dynamic(dumpst_hook:simple_rewrite/2). - -dumpst_hook:simple_rewrite(I,O):- fail, notrace(catch(arc_simple_rewrite(I,O),_,fail)). - -arc_simple_rewrite(I,O):- - \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), - current_predicate(bfly_startup/0), - current_predicate(is_group/1), - b_setval(arc_can_portray,nil), - locally(b_setval(arc_can_portray,nil),once((compound(I), lock_doing(srw_arc,I,srw_arc(I,O))))), I\==O, I\=@=O, !, \+ I=O, - b_setval(arc_can_portray,t). - - -%:- set_prolog_flag(never_pp_hook, true). - - -portray_terse:- true,!. - -:- discontiguous arc_portray/2. - - -arc_portray(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -arc_portray(_,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), !, fail. -arc_portray(Map,TF):- get_map_pairs(Map,Type,Pairs),!, arc_portray_pairs(Type,TF,Pairs). - -arc_portray_t(G, _):- is_vm_map(G), !, write_map(G,'arc_portray_t'). -arc_portray_t(G, _):- is_grid(G), !, data_type(G,W),writeq(grid(W)). -arc_portray_t(G, _):- print(G),!. - -arc_portray(G, _):- is_vm_map(G), !, write_map(G,'arc_portray'). -arc_portray(G, TF):- TF == true, portray_terse, arc_portray_t(G, TF),!. -arc_portray(G, TF):- catch(arc_portray_nt(G, TF),E,(writeln(E),never_let_arc_portray_again,fail)),!. -%arc_portray(G, _TF):- writeq(G),!. - -% Portray In Debugger - -arc_portray_nt(G, false):- is_grid(G), print_grid(G),!. -%arc_portray_nt([G|L],_False):- is_object(G), !, pp([G|L]). -%arc_portray_nt(G0, true):- is_group(G0), ppt(G0),!. -%arc_portray_nt(G0, false):- is_group(G0), ppt(G0),!. -arc_portray_nt(G0, Tracing):- is_group(G0), into_list(G0,G), length(G,L),% L>1, !, - maplist(tersify,G0,GG), write(GG), - if_t(Tracing==false, - in_cmt(( - dash_chars, - once(((why_grouped(_TestID,Why,WG),WG=@=G,fail);(Why = (size2D=L)))),!, - print_grid(Why,G),nl_now, - - %underline_print(writeln(Why)), - %print_info_l(G), - dash_chars))). - - -arc_portray_nt(G,_False):- is_object(G), wots(S,writeg(G)), - global_grid(G,GG),!, - print_grid(GG), - write(S),!. % show_indiv(S,G). - %object_grid(G,OG), - %neighbor_map(OG,NG), !, - %print_grid(object_grid,NG),nl_now, - %underline_print(print_info(G)), - -arc_portray_nt(G,false):- via_print_grid(G),!, grid_size(G,H,V),!,H>0,V>0, print_grid(H,V,G). - -% Portray In tracer -arc_portray_nt(G,true):- is_object(G),underline_print((ppt(G))). -arc_portray_nt(G,true):- via_print_grid(G),write_nbsp,underline_print((ppt(G))),write_nbsp. -arc_portray_nt(G,true):- tersify(G,O),write_nbsp,writeq(O),write_nbsp. -arc_portray_nt(G0, _):- \+ is_gridoid(G0),!,print(G0). - - -arc_portray_pairs(Type,TF,Pairs):- - length(Pairs,N), - writeln(arc_portray_pairs(Type,TF,len(N))), - swap_kv(Pairs,VKPairs), - keysort(VKPairs,SVKPairs), - my_maplist(tc_arg(2),SVKPairs,SVKPairs2), - arc_portray_type_pairs(TF,SVKPairs2). - -arc_portray_type_pairs(TF,Pairs):- append(Left,[K1-V1,K2-V2|Right],Pairs),is_grid(V1),is_grid(V2),!, - append(Left,[call-print_side_by_side(yellow,V1,K1,_,V2,K2)|Right],PairsM), - arc_portray_type_pairs(TF,PairsM). -arc_portray_type_pairs(TF,Pairs):- - forall(member(K-V,Pairs),arc_portray_pair(Pairs,K,V,TF)). - -swap_kv([_-V|Pairs],VKPairs):- plain_var(V),!, swap_kv(Pairs,VKPairs). -swap_kv([K-V|Pairs],['-'(Type,K-V)|VKPairs]):- - data_type(V,Type), - swap_kv(Pairs,VKPairs). -swap_kv([],[]). - - -arc_portray_pair(Ps,K,Val,TF):- - nl_if_needed, - arc_portray_1_pair(Ps,K,Val,TF), - nl_if_needed_ansi. - -arc_portray_1_pair(_Ps,call,Val,_TF):- !, call(Val). -arc_portray_1_pair(Ps,K,Val,TF):- - (via_print_grid(Val) -> print_grid(K,Val) - ; (print(K),write('= '),once(arc_portray(Val,TF);print(Val)))), - ignore(arc_portray_pair_optional(Ps,K,Val,TF)),!. - -arc_portray_pair_optional(Ps,K,Val,TF):- - once(( Val\==[], is_list(Val),my_maplist(is_object,Val), - print_info(Val), - Val \= [_], - compare_objects(Val,Diffs), - color_print(cyan,call(arc_portray_pair(Ps,diffs(K),Diffs,TF))))). - - -% arc_portray(G):- \+ \+ catch((wots_hs(S,( tracing->arc_portray(G,true);arc_portray(G,false))),write(S),ttyflush),_,fail). -arc_portray(G):- \+ compound(G),fail. -arc_portray(G):- is_vm(G), !, write('..VM..'). -arc_portray(G):- \+ nb_current(arc_portray,t),\+ nb_current(arc_portray,f),is_print_collapsed,!, - locally(nb_setval(arc_portray,t),arc_portray1(G)). -arc_portray(G):- \+ nb_current(arc_portray,f),!, locally(nb_setval(arc_portray,t),arc_portray1(G)). -arc_portray(G):- locally(nb_setval(arc_portray,f),arc_portray1(G)). - -arc_portray1(G):- - flag(arc_portray_current_depth,X,X), X < 3, - \+ \+ - setup_call_cleanup(flag(arc_portray_current_depth,X,X+1),catch(((tracing->arc_portray(G,true); - arc_portray(G,false)),ttyflush),E,(fail,format(user_error,"~N~q~n",[E]),fail)),flag(arc_portray_current_depth,_,X)). - - -%via_print_grid(G):- tracing,!,fail. -via_print_grid(G):- is_points_list(G). %,!,fail,grid_size(G,H,V),number(H),number(V),H>1,V>1. -via_print_grid(G):- is_grid(G). -via_print_grid(G):- is_obj_props(G),!,fail. -via_print_grid(G):- is_object(G). -via_print_grid(G):- is_group(G). -via_print_grid(G):- is_gridoid(G). - - - -terseA(_,[],[]):- !. -terseA(_,L,'... attrs ...'(N)):- is_list(L),length(L,N),N>10,!. -terseA(I,[A|L],[B|LL]):-terseA(I,A,B),terseA(I,L,LL),!. -terseA(I,dif(A,B),B):-A==I,!. -terseA(I,dif(B,A),B):-A==I,!. -terseA(_,put_attr(_,B,A),A):- B==ci,!. -terseA(_,put_attr(_,B,A),B=A):-!. -terseA(_,A,A):-!. - - -simple_enough(I):- plain_var(I). -simple_enough(I):- atomic(I). -simple_enough(I):- \+ compound(I),!. -simple_enough(_*_):-!. -simple_enough(_+_):-!. -simple_enough(A):- functor(A,_,1),tc_arg(1,A,E),!,simple_enough(E). -%simple_enough(I):- number(I). -%simple_enough(I):- atom(I). - -tersify0(I,O):- simple_enough(I),!,I=O. -tersify0(I,av(C,Others)):- attvar(I),copy_term(I,C,Attrs),terseA(C,Attrs,Others),!. -tersify0(I,I):- var(I),!. - - -%tersifyC(D):- is_vm_map(D),!. -tersifyC(av(_,_)). -tersifyC(objFn(_,_)). -tersifyC(groupFn(_,_)). -tersifyC(objFn(_)). -tersifyC(groupFn(_)). - -tersify1(I,O):- simple_enough(I),!,I=O. -tersify1(av(_,Blue), -(Blue)):-!. -tersify1(I,O):- compound(I), tersifyC(I),!,I=O. -tersify1(gridFn(I),gridFn(I)):-!. % tersifyG(I,O). -%tersify1(gridFn(I),gridFn(O)):-tersifyG(I,O). -tersify1(Nil,[]):- Nil == [],!. -tersify1(I,gridFn(S)):- is_grid(I), into_gridnameA(I,O),!,sformat(S,'~w',[O]). -tersify1(I,gridFn(O)):- is_grid(I),tersifyG(I,O),!. -tersify1(I,groupFn(O,List)):- is_group(I), mapgroup(tersify1,I,List),mapgroup(obj_to_oid,I,OIDs),length(List,N), !,ignore((get_current_test(TestID),is_why_grouped(TestID,N,Why,OIDs),!,O=Why)). - -tersify1(I,Q):- is_object(I),object_ref_desc(I,Q),!. -tersify1(I,O):- is_vm_map(I), get_kov(objs,I,_),!, O='$VAR'('VM'). -tersify1(I,O):- is_vm_map(I), get_kov(pairs,I,_),!, O='$VAR'('Training'). - - -tersifyG(I,O):- tersifyL(I,O),numbervars(O,1,_,[attvar(bind),singletons(false)]),!. - -%tersifyL(I,I):- is_ftVar(I),!. -%tersifyL(I,I):- \+ compound(I),!. -tersifyL(I,O):- \+ is_cons(I),!,O=I. -tersifyL([H|I],[HH|I]):- \+ is_list(I),!,tersify(H,HH). -tersifyL([H|I],O):- nonvar(H), \+ is_group(I), display_length(I,N) , N>170, - length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O),!. -tersifyL(I,O):- tersify0(I,O),!. -tersifyL([H|TT],[HH|TT]):- tersify(H,HH),!,tersifyL(TT,TT),!. -tersifyL(I,O):- tersify1(I,O),!. -tersifyL(I,I). - -tersify2(I,O):- compound(I),(I=(N=V)),tersify2(N,NN),tersify2(V,VV),!,O=(NN=VV). -tersify2(I,O):- simple_enough(I),!,I=O. -tersify2(I,O):- compound(I),tersify1(I,O),!. -tersify2(I,O):- tersify0(I,O),!. -tersify2(I,O):- is_list(I), !, my_maplist(tersify2,I,O). -tersify2(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). -tersify2(I,I). - -tersify3(I,O):- compound(I),(I=(N=V)),tersify3(N,NN),tersify3(V,VV),!,O=(NN=VV). -tersify3(I,O):- simple_enough(I),!,I=O. -tersify3(I,O):- compound(I),tersify1(I,O),!. -tersify3(I,O):- tersify0(I,O),!. -tersify3([H|I],O):- is_list(I), ((display_length(I,N), N>170) -> - (length(I,LL),tersify(H,HH),(('...'(HH,LL,'...'(N)))=O)); I=O),!. -tersify3(I,O):- is_list(I), !, my_maplist(tersify3,I,O). -tersify3(I,O):- compound(I), !, compound_name_arguments(I,F,IA), my_maplist(tersify,IA,OA), compound_name_arguments(O,F,OA). -tersify3(I,I). - -write_map(G,Where):- is_vm(G), !, write('...VM_'),write(Where),write('...'). -write_map(G,Where):- is_vm_map(G), !, write('...Map_'),write(Where),write('...'). -write_map(G,Where):- is_dict(G), !, write('...Dict_'),write(Where),write('...'). -write_map(_G,Where):- write('...'),write(Where),write('...'). - - - -non_empty_wqs_c(V):- \+ empty_wqs_c(V). -empty_wqs_c(V):- var(V),!,fail. -empty_wqs_c(A):- atom(A),atom_string(A,S),!,empty_wqs_c(S). -empty_wqs_c([]). -empty_wqs_c(""). -empty_wqs_c(" "). -empty_wqs_c(" "). -empty_wqs_c("\n"). - -is_writer_goal(H):- \+ callable(H),!,fail. -is_writer_goal(H):- is_list(H),!,fail. -is_writer_goal(A):- atom(A),!,is_writer_goal_f(A). -is_writer_goal(H):- \+ compound(H),!,fail. -%is_writer_goal((C1,C2)):- !, (is_writer_goal(C1);is_writer_goal(C2)). -is_writer_goal(C):- compound_name_arity(C,F,_),once(is_writer_goal_f(F);(tc_arg(_,C,E),is_writer_goal(E))). - - -is_writer_goal_f(wqs_c). -is_writer_goal_f(F):- is_writer_goal_l(F),!. -is_writer_goal_f(F):- \+ atom(F),!, term_to_atom(F,A),is_writer_goal_f(A). -is_writer_goal_f(F):- not_writer_goal_r(R),atom_concat(_,R,F),!,fail. -is_writer_goal_f(F):- is_writer_goal_l(L),atom_concat(L,_,F),!. -is_writer_goal_f(F):- is_writer_goal_l(R),atom_concat(_,R,F),!. -not_writer_goal_r(test). is_writer_goal_l(msg). is_writer_goal_l(call). -is_writer_goal_l(nl). is_writer_goal_l(format). is_writer_goal_l(with_). -is_writer_goal_l(locally). - -is_writer_goal_l(html). is_writer_goal_l(ptcol). is_writer_goal_l(wots). -is_writer_goal_l(print). is_writer_goal_l(flush_output). is_writer_goal_l(wqs). -is_writer_goal_l(pp). is_writer_goal_l(write). is_writer_goal_l(dash_). - - -maybe_color(SS,_):- term_contains_ansi(SS),!, write_nbsp, write(SS). -maybe_color(SS,P):- term_contains_ansi(P),!, write_nbsp, write(SS). -maybe_color(SS,P):- pp_msg_color(P,C), ansicall(C,is_maybe_bold(P,write(SS))),!. - -write_atom(S):- \+ atom(S),!,wqs(S). -write_atom(S):- atom_contains(S,'~'),!,notrace(catch(format(S,[]),_,maybe_write_atom_link(S))). -write_atom(S):- maybe_write_atom_link(S),!. -write_atom(S):- into_title_str(S,TS),write(TS),!. - -:- meta_predicate(into_title_str(+,-)). -into_title_str(Term,Str):- string(Term),!,Str=Term. -into_title_str(Term,Str):- plain_var(Term),sformat(Str,'~p',[Term]),!. -into_title_str(Term,Str):- var(Term),tersify0(Term,Terse), sformat(Str,'~p',[Terse]),!. -into_title_str(Term,Str):- term_is_ansi(Term), wots(Str,write_keeping_ansi_mb(Term)),!. -into_title_str(Term,Str):- (is_codelist(Term);is_charlist(Term)),catch(sformat(Str,'~s',[Term]),_,sformat(Str,'~p',[Term])),!. -into_title_str(Term,Str):- is_list(Term),my_maplist(into_title_str,Term,O3),atomics_to_string(O3," ",Str),!. -into_title_str([H|T],Str):- into_title_str(H,A),into_title_str(T,B),atomics_to_string([A,B]," ",Str),!. -into_title_str(Term,Str):- \+ callable(Term),sformat(Str,'~p',[Term]),!. -into_title_str(format(Fmt,Args),Str):- sformat(Str,Fmt,Args),!. -into_title_str(Term,""):- empty_wqs_c(Term),!. -into_title_str(out,"Output"). -into_title_str(in,"Input"). -into_title_str(i,"IN"). -into_title_str(o,"OUT"). -into_title_str(Term,Str):- atom(Term),is_valid_linkid(Term,Kind,_),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[Term,KS]),!. -into_title_str(Term,Str):- atom(Term), atom_contains(Term,'_'), \+ atom_contains(Term,' '), to_case_breaks(Term,T), - include(\=(xti(_,punct)),T,O),my_maplist(tc_arg(1),O,O1),my_maplist(toProperCamelAtom,O1,O2), - atomics_to_string(O2," ",Str),!. -into_title_str(Term,Str):- has_short_id(Term,Kind,ID),Term\=@=Kind,into_title_str(Kind,KS),sformat(Str,'~w (~w)',[ID,KS]),!. - -into_title_str(T-U,Str):- into_title_str([some(T),"..to..",some(U)],Str). -into_title_str(T*U,Str):- into_title_str([some(T),"(",some(U),")"],Str). -into_title_str(T+U,Str):- into_title_str(T,S1), number(U), N is U+1, sformat(Str,'~w #~w',[S1,N]). -into_title_str(T+U,Str):- var(U), into_title_str(T,S1), sformat(Str,'~w(s)',[S1]). -into_title_str(title(Term),Str):- !, into_title_str(Term,Str),!. -into_title_str(some(Var),"Some"):- var(Var),!. -into_title_str(some(Var),Str):- !, into_title_str(Var,Str). -into_title_str(User:Term,Str):- User == user, !, into_title_str(Term,Str). -into_title_str(trn,"Training Pair"). -into_title_str(tst,"EVALUATION TEST"). -%into_title_str(Term,Str):- tersify23(Term,Terse),Term\=@=Terse,!,into_title_str(Terse,Str). -into_title_str(Term,Str):- callable_arity(Term,0),is_writer_goal(Term),catch(notrace(wots(Str,call_e_dmsg(Term))),_,fail),!. -into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)),nonvar(Str),atom_length(Str,E50),E50<180,!. -into_title_str(Term,Str):- compound(Term), compound_name_arguments(Term,Name,Args), - %include(not_p1(plain_var),Args,Nonvars), - Args=Nonvars, - my_maplist(tersify,Nonvars,ArgsT), into_title_str([Name,"(",ArgsT,")"],Str),!. -into_title_str(Term,Str):- catch(sformat(Str,'~p',[Term]),_,term_string(Term,Str)). - -has_short_id(TestID,testid,UUID):- is_valid_testname(TestID),test_id_atom(TestID,UUID). -has_short_id(Obj,object,OID):- is_object(Obj),obj_to_oid(Obj,OID). -has_short_id(Grid,grid,GID):- is_grid(Grid),grid_to_gid(Grid,GID). - - -is_valid_linkid(ID,testid,TestID):- atom_id(ID,TestID),is_valid_testname(TestID),!. -is_valid_linkid(ID,object,Obj):- known_object(ID,Obj),!. -is_valid_linkid(ID,grid,Grid):- known_grid(ID,Grid),!. -% individuate_3(complete, two(v_1d398264_trn_0_in, v_1d398264_trn_0_out)) -is_valid_linkid(ID,group,Grp):- get_current_test(TestID),is_why_grouped_g(TestID,_Count,ID,Grp). - - -wqs_c(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -wqs_c(S):- (string(S);is_codelist(S);is_charlist(S)),catch(format('~s',[S]),_,writeq(S)). -wqs_c(S):- empty_wqs_c(S),!. -wqs_c(S):- var(S),!,write(var(S)). -wqs_c(S):- atom(S),into_title_str(S,TS),write(TS),!. -wqs_c(S):- atom(S),write_atom(S),!. -%wqs_c(S):- atom(S),write(S),!. -wqs_c(S):- \+compound(S),!,notrace(catch(format('~p',[S]),_,write(S))). -wqs_c(title(S)):- !, wqs_c(S). -wqs_c(H+T):- !, wqs_c(H),write_nbsp,wqs_c(T). -wqs_c(S):- is_grid(S), print_grid(S),!. -wqs_c(S):- is_vm(S), pp(S) ,!. -wqs_c(L):- is_list(L), include(non_empty_wqs_c,L,LL),!,wqs_c_l(LL). -wqs_c([H|T]):- pp([H|T]),!. -wqs_c(H):- callable_arity(H,0),is_writer_goal(H),catch(call_e_dmsg(H),_,fail),!. -%wqs_c(H):- callable_arity(H,0),call(H),!. -wqs_c(H):- locally(t_l:wqs_fb(pp_no_nl),wqs(H)),!. - -wqs_c_l([]):-!. -wqs_c_l([H]):- wqs_c(H),!. -wqs_c_l([H|T]):- wqs_c(H),write_nbsp,wqs_c_l(T),!. - - - - - -ppt(_):- is_print_collapsed,!. -ppt(G):- stack_check_or_call(4000,writeq(G)),!. -ppt(G):- is_vm_map(G), !, write_map(G,'ppt'). -ppt(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -%ppt(P):- compound(P),wqs1(P),!. - -ppt(P):- \+ ansi_main, wants_html,!,ptcol_html(P),write_br. -ppt(P):- \+ \+ ((tersify(P,Q),!,pp(Q))),!. -ppt(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,ptcol_html(P)),write_br. -ppt(Color,P):- \+ \+ ((tersify(P,Q),!,pp(Color,Q))),!. - - -write_br:- ansi_main,!,nl. -write_br:- write('
    '). - -ptc(Color,Call):- pp(Color,call(Call)). - -:- meta_predicate(ppnl(+)). -ppnl(Term):- is_list(Term),!,g_out(wqs(Term)). -ppnl(Term):- nl_if_needed,format('~q',[Term]),nl_if_needed_ansi. - -:- meta_predicate(pp(+)). -pp(Color,P):- \+ ansi_main, wants_html,!,with_color_span(Color,pp(P)),write_br. -pp(Color,P):- ignore((quietlyd((wots_hs(S,pp(P)),!,color_print(Color,S))))). - -pp(_):- is_print_collapsed,!. -%pp(Term):- is_toplevel_printing(Term), !, nl_if_needed, pp_no_nl(Term),!,nl_if_needed_ansi. -pp(_Term):- nl_if_needed, fail. -pp(Term):- \+ ansi_main, wants_html,!, wots_vs(SS,ptcol_html_scrollable(Term)),write(SS),write_br. -pp(Term):- \+ nb_current(arc_can_portray,_),!,locally(nb_setval(arc_can_portray,t),print(Term)). -pp(Term):- az_ansi(pp_no_nl(Term)),!,nl_if_needed_ansi. - -/* -ptcol(P):- wants_html,!,ptcol_html(P). -ptcol(call(P)):- callable(P),!,call(P). -ptcol(P):- pp(P). -*/ - -%ptcol_html(P):- ptcol_html_0(P). -ptcol_html(P):- ptcol_html_scrollable_0(P). -ptcol_html_scrollable(P):- with_tag_ats(div,scrollable,ptcol_html_scrollable_0(P)). - - -ptcol_html_0(P):- with_tag(pre,ptcol_html_wo_pre(P)). -ptcol_html_wo_pre(call(P)):- callable(P),!, in_pp_html(call(P)). -ptcol_html_wo_pre(P):- in_pp_html(print_tree_no_nl(P)). -ptcol_html_scrollable_0(P):- ptcol_html_wo_pre(P). - - -pp_wcg(G):- wants_html,!,ptcol_html_scrollable(G). -pp_wcg(G):- pp_safe(call((locally(nb_setval(arc_can_portray,t),print(G))))),!. - -wqln(Term):- ppnl(Term). -wqnl(G):- pp_safe(call((locally(nb_setval(arc_can_portray,nil),print(G))))),!. - -pp_safe(_):- nb_current(pp_hide,t),!. -pp_safe(call(W)):- !, nl_if_needed,nl_now,call(W),nl_now. -pp_safe(W):- nl_if_needed,nl_now,writeq(W),nl_now. -pp_safe(C,W):- color_print(C,call(pp_safe(W))). - - -%p_p_t_no_nl(Term):- is_toplevel_printing(Term), !, print_tree_no_nl(Term). - -p_p_t_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). -p_p_t_no_nl(Term):- az_ansi(print_tree_no_nl(Term)). - -ppt_no_nl(P):- \+ ansi_main, wants_html,!,ptcol_html(P). -ppt_no_nl(P):- tersify(P,Q),!,pp_no_nl(Q). - -is_toplevel_printing(_):- \+ is_string_output, line_position(current_output,N), N<2, fail. - -pp_no_nl(P):- var(P),!,pp(var_pt(P)),nop((dumpST,ibreak)). -pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -pp_no_nl(P):- atom(P),atom_contains(P,'~'),!,format(P). -pp_no_nl(G):- is_vm_map(G), !, write_map(G,'pp'). -%pp_no_nl(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -pp_no_nl(P):- \+ \+ (( pt_guess_pretty(P,GP),ptw(GP))). -%pp(P):-!,writeq(P). -%ptw(P):- quietlyd(p_p_t_nl(P)),!. -%ptw(_):- nl_if_needed,fail. -ptw(P):- var(P),!,ptw(var_ptw(P)),nop((dumpST,ibreak)). -ptw(G):- is_vm_map(G), !, write_map(G,'ptw'). -ptw(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -ptw(P):- p_p_t_no_nl(P),!. - -%ptw(P):- quietlyd(write_term(P,[blobs(portray),quoted(true),quote_non_ascii(false), portray_goal(print_ansi_tree),portray(true)])),!. -print_ansi_tree(S,_):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -print_ansi_tree(P,_):- catch(arc_portray(P),_,(never_let_arc_portray_again,fail)),!. -print_ansi_tree(P,_OL):- catch(p_p_t_no_nl(P),_,(never_let_arc_portray_again,fail)),!. - -%p_p_t_nl(T):- az_ansi(print_tree_nl(T)). -%p_p_t(T):- az_ansi(print_tree(T)). - -pt_guess_pretty(P,O):- \+ nb_current(in_pt_guess_pretty,t), locally(nb_setval(in_pt_guess_pretty,t),pt_guess_pretty_1(P,O)). -pt_guess_pretty(O,O). - -upcase_atom_var_l(IntL,NameL):- upcase_atom_var(IntL,NameL). -upcase_atom_var_l(IntL,NameL):- is_list(IntL),!,my_maplist(upcase_atom_var_l,IntL,NameL). - -pt_guess_pretty_1(P,O):- copy_term(P,O,_), - ignore((sub_term(Body,O), compound(Body), Body=was_once(InSet,InVars),upcase_atom_var_l(InSet,InVars))), - ignore(pretty1(O)),ignore(pretty_two(O)),ignore(pretty_three(O)),ignore(pretty_final(O)),!, - ((term_singletons(O,SS),numbervars(SS,999999999999,_,[attvar(skip),singletons(true)]))). - -:- dynamic(pretty_clauses:pp_hook/3). -:- multifile(pretty_clauses:pp_hook/3). -:- module_transparent(pretty_clauses:pp_hook/3). -pretty_clauses:pp_hook(FS,Tab,S):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), notrace(catch(arc_pp_hook(FS,Tab,S),_,fail)). - -arc_pp_hook(_,Tab,S):- term_is_ansi(S), !,prefix_spaces(Tab), write_keeping_ansi_mb(S). -%arc_pp_hook(_,Tab,S):- is_vm(S),!,prefix_spaces(Tab),!,write('..VM..'). -%arc_pp_hook(_, _,_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. -arc_pp_hook(FS,_ ,G):- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t), - current_predicate(is_group/1), - locally(b_setval(pp_parent,FS), - print_with_pad(pp_hook_g(G))),!. - -pp_parent(PP):- nb_current(pp_parent,PP),!. -pp_parent([]):-!. - -%:- meta_predicate(lock_doing(+,+,0)). -:- meta_predicate(lock_doing(+,+,:)). -lock_doing(Lock,G,Goal):- - (nb_current(Lock,Was);Was=[]), !, - \+ ((member(E,Was),E==G)), - locally(nb_setval(Lock,[G|Was]),Goal). - -never_let_arc_portray_again:- set_prolog_flag(never_pp_hook, true),!. -arc_can_portray:- \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t). - -arcp:will_arc_portray:- - \+ current_prolog_flag(never_pp_hook, true), - \+ nb_current(arc_can_portray,f), - %nb_current(arc_can_portray,t), - current_prolog_flag(debug,false), - \+ tracing, - flag(arc_portray_current_depth,X,X),X<3, - current_predicate(bfly_startup/0). - -user:portray(Grid):- - arcp:will_arc_portray, \+ \+ catch(quietly(arc_portray(Grid)),_,fail),!, flush_output. - - -pp_hook_g(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -pp_hook_g(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. -pp_hook_g(S):- term_contains_ansi(S), !, write_nbsp, pp_hook_g0(S). -pp_hook_g(G):- \+ plain_var(G), lock_doing(in_pp_hook_g,G,pp_hook_g0(G)). - -pp_hook_g0(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). -pp_hook_g0(_):- \+ \+ current_prolog_flag(never_pp_hook, true), nb_current(arc_can_portray,t),!,fail. -pp_hook_g0(_):- in_pp(bfly),!,fail. -pp_hook_g0(G):- wots_hs(S,in_bfly(f,pp_hook_g10(G))),write(S). - -mass_gt1(O1):- into_obj(O1,O2),mass(O2,M),!,M>1. - -% Pretty printing -pp_hook_g10(G):- \+ plain_var(G), current_predicate(pp_hook_g1/1), lock_doing(in_pp_hook_g10,G,pp_hook_g1(G)). - -%as_grid_string(O,SSS):- is_grid(O),wots_vs(S,print_grid(O)), sformat(SSS,'{ ~w}',[S]). -as_grid_string(O,SSS):- wots_vs(S,show_indiv(O)), sformat(SSS,'{ ~w}',[S]). -as_pre_string(O,SS):- wots_hs(S,show_indiv(O)), strip_vspace(S,SS). - - -pretty_grid(O):- - catch( - (wots_hs(S,print_grid(O)),strip_vspace(S,SS), - ptc(orange,(format('" ~w "',[SS])))), - _,fail),!. -/* -pretty_grid(O):- - catch( - (wots_hs(S,print_grid(O)),strip_vspace(S,SS), - ptc(orange,(format('" ~w "',[SS])))), - _,(never_let_arc_portray_again,fail)). -*/ -pp_hook_g1(O):- plain_var(O), !, fail. - -pp_hook_g1(O):- attvar(O), !, is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. -pp_hook_g1(S):- term_is_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). -%pp_hook_g1(S):- term_contains_ansi(S), !, fail, write_nbsp, write_keeping_ansi_mb(S). -pp_hook_g1(rhs(O)):- write_nbsp,nl,bold_print(print(r_h_s(O))),!. - -pp_hook_g1(iz(O)):- compound(O), O = info(_),underline_print(print(izz(O))),!. -pp_hook_g1(O):- is_grid(O), /* \+ (sub_term(E,O),compound(E),E='$VAR'(_)), */ pretty_grid(O). - - -pp_hook_g1(O):- is_object(O), into_solid_grid(O,G), wots(SS,pretty_grid(G)),write(og(SS)),!. - -pp_hook_g1(shape_rep(grav,O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(shape_rep(grav,S,Q)),!. -pp_hook_g1(vals(O)):- !, writeq(vals(O)),!. -%pp_hook_g1(l2r(O)):- into_solid_grid_strings(l2r(O),Str),Str\=@=l2r(O),print_term_no_nl(Str),!. -pp_hook_g1(localpoints(O)):- is_points_list(O), as_grid_string(O,S), wotsq(O,Q), print(localpoints(S,Q)),!. -pp_hook_g1(C):- compound(C), compound_name_arguments(C,F,[O]),is_points_list(O), length(O,N),N>2, as_grid_string(O,S), compound_name_arguments(CO,F,[S]), print(CO),!. - -pp_hook_g1(O):- is_points_list(O),as_grid_string(O,S),write(S),!. -pp_hook_g1(O):- is_real_color(O), color_print(O,call(writeq(O))),!. -pp_hook_g1(O):- is_colorish(O), data_type(O,DT), writeq('...'(DT)),!. - -pp_hook_g1(_):- \+ in_pp(ansi),!, fail. - - -pp_hook_g1(Grp):- current_predicate(pp_ilp/1),is_rule_mapping(Grp),pp_ilp(Grp),!. - -pp_hook_g1(O):- atom(O), atom_contains(O,'o_'), pp_parent([LF|_]), \+ (LF==lf;LF==objFn), - resolve_reference(O,Var), O\==Var, \+ plain_var(Var),!, - write_nbsp, writeq(O), write(' /* '), show_indiv(Var), write(' */ '). - -pp_hook_g1(O):- is_object(O),pp_no_nl(O), !. -pp_hook_g1(O):- is_group(O),pp_no_nl(O), !. - -%pp_hook_g1(change_obj(N,O1,O2,Sames,Diffs)):- showdiff_objects5(N,O1,O2,Sames,Diffs),!. - -pp_hook_g1(O):- is_vm_map(O),data_type(O,DT), writeq('..map.'(DT)),!. -pp_hook_g1(O):- is_gridoid(O),show_indiv(O), !. -%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), with_tagged('h5',w_section(object,[O1, O2],pp(O))). -%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(showdiff_objects(O1,O2)),!. -%pp_hook_g1(O):- O = change_obj( O1, O2, _Same, _Diff), w_section(object,[O1, O2],with_tagged('h5',pp(O))). -%pp_hook_g1(O):- O = diff(A -> B), (is_gridoid(A);is_gridoid(B)),!, p_c_o('diff', [A, '-->', B]),!. -pp_hook_g1(O):- O = showdiff( O1, O2), !, showdiff(O1, O2). -%pp_hook_g1(O):- compound(O),wqs1(O), !. -pp_hook_g1(O):- \+ compound(O),fail. -pp_hook_g1(G):- '@'(pp_hook_g1a(G),user). - -pp_hook_g1a(G):- \+ current_prolog_flag(debug,true), - current_predicate(pp_hook_g2/1), lock_doing(in_pp_hook_g3,any,pp_hook_g2(G)),!. -pp_hook_g1a(G):- fch(G),!. - -%pp_hook_g2(O):- current_predicate(colorize_oterms/2),colorize_oterms(O,C), notrace(catch(fch(C),_,fail)),! . - -fch(O):- wqs1(O). -%fch(O):- pp_no_nl(O). -%fch(O):- print(O). -%fch(O):- p_p_t_no_nl(O). - -wotsq(O,Q):- wots_hs(Q,wqnl(O)). -has_goals(G):- term_attvars(G,AV),AV\==[]. -has_goals(G):- term_variables(G,TV),term_singletons(G,SV),TV\==SV. - -maybe_term_goals(Term,TermC,Goals):- - term_attvars(Term,Attvars), Attvars\==[],!, - term_variables(Term,Vars), - include(not_in(Attvars),Vars,PlainVars), - copy_term((Attvars+PlainVars+Term),(AttvarsC+PlainVarsC+TermC),Goals), - numbervars(PlainVarsC,10,Ten1,[singletons(true),attvar(skip)]), - numbervars(AttvarsC+Goals,Ten1,_Ten,[attvar(bind),singletons(false)]). - -maybe_replace_vars([],SGoals,TermC,SGoals,TermC):-!. -maybe_replace_vars([V|VarsC],SGoals,TermC,RSGoals,RTermC):- - my_partition(sub_var(V),SGoals,Withvar,WithoutVar), - Withvar=[OneGoal], - freeze(OneGoal,(OneGoal\==null,OneGoal \== @(null))), - findall(_,sub_var(V,TermC),LL),LL=[_],!, - subst([WithoutVar,TermC],V,{OneGoal},[SGoalsM,TermCM]), - maybe_replace_vars(VarsC,SGoalsM,TermCM,RSGoals,RTermC). -maybe_replace_vars([_|VarsC],SGoals,TermC,RSGoals,RTermC):- - maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC). - - -src_sameish(Orig,Find):- copy_term(Orig,COrig),Find=Orig,Orig=@=COrig. - -number_vars_calc_goals(Term,SSRTermC,[1|SRSGoals]):- - term_singletons(Term,Singles), - term_attvars(Term,Vars), - copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), - notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]),_,fail)), - sort_goals(Goals,VarsC,SGoals), - maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), - include(not_sub_var(RSGoals),SinglesC,KSingles), - length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), - subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), - subst_1L_p2(src_sameish,[ - {dif('$VAR'('__'),RED)}=dif(RED), - {cbg('$VAR'('__'))}=cbg], - SRTermC,SSRTermC),!. - -number_vars_calc_goals(Term,SRTermC,[2|RSGoals]):- - term_attvars(Term,AVars), - copy_term(Term+AVars,TermC+VarsC,GoalsI), - term_attvars(GoalsI,GAttvars), copy_term(GoalsI+GAttvars,_+GAttvarsC,GoalsGoals), - append(GoalsI,GoalsGoals,Goals), - append([VarsC,GAttvarsC,AVars,GAttvars],SortVars), - numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), - sort_goals(Goals,SortVars,SGoals), - maybe_replace_vars(SortVars,SGoals,TermC,RSGoals,RTermC), - subst_1L_p2(src_sameish,[ - {dif('$VAR'('___'),RED)}=dif(RED), - {cbg('$VAR'('___'))}=cbg], - RTermC,SRTermC),!. - -number_vars_calc_goals(Term,SSRTermC,[3|SRSGoals]):- - term_singletons(Term,Singles), - term_attvars(Term,Vars), - copy_term(Term+Vars+Singles,TermC+VarsC+SinglesC,Goals), - numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(bind)]), - sort_goals(Goals,VarsC,SGoals), - maybe_replace_vars(VarsC,SGoals,TermC,RSGoals,RTermC), - include(not_sub_var(RSGoals),SinglesC,KSingles), - length(KSingles,SL),length(VSingles,SL),my_maplist(=('$VAR'('__')),VSingles), - subst_2L(KSingles,VSingles,[RTermC,RSGoals],[SRTermC,SRSGoals]), - subst(SRTermC,{cbg('_')},cbg,SSRTermC),!. - -number_vars_calc_goals(Term,TermC,[4|SGoals]):- - term_variables(Term,Vars), - term_attvars(Term,Attvars), - copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), - notrace(catch(numbervars(TermC+Goals,0,_Ten1,[singletons(true)]),_,fail)), - append([AttvarsC,VarsC,AttvarsC,Vars],Sorted), - sort_goals(Goals,Sorted,SGoals),!. - -number_vars_calc_goals(Term,TermC,[5|SGoals]):- - term_variables(Term,Vars), - term_attvars(Term,Attvars), - copy_term(Term+Vars+Attvars,TermC+VarsC+AttvarsC,Goals), - numbervars(TermC+Goals,0,_Ten1,[singletons(false),attvar(skip)]), - append([AttvarsC,VarsC,Attvars,Vars],Sorted), - sort_goals(Goals,Sorted,SGoals),!. - - - -writeg(Term):- ignore( \+ notrace(catch(once(writeg0(Term);ppa(Term)),E,(pp(E),ppa(Term))))),!. - -writeg0(Term):- term_attvars(Term,Attvars),Attvars\==[],!, - must_det_ll(((number_vars_calc_goals(Term,TermC,Goals), - writeg5(TermC)),!, - if_t(Goals\==[],(nl_if_needed, - write(' goals='), call_w_pad_prev(3,az_ansi(print_tree_no_nl(Goals))))))),!. - -writeg0(Term):- \+ ground(Term), - \+ \+ must_det_ll(( - numbervars(Term,0,_Ten1,[singletons(true),attvar(skip)]), writeg5(Term))). -writeg0(Term):- writeg5(Term),!. - -writeg5(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X),write_nbsp. -writeg5(N=V):- is_simple_2x2(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). -writeg5(N=V):- is_gridoid(V),!,print_grid(N,V),writeln(' = '),call_w_pad_prev(2,writeg9(V)). -writeg5(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad_prev(2,writeg5(V)). -writeg5(_):- write_nbsp, fail. -writeg5(V):- writeg9(V). - -writeg8(X):- is_ftVar(X),!,print(X). -writeg8(X):- var(X),!,print(X). -writeg8(X):- writeq(X). - -writeg9(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). -writeg9(V):- is_list(V),nl_if_needed,write('['),!,my_maplist(writeg5,V),write(']'). -writeg9(_):- write_nbsp,write(' \t '),fail. -writeg9(X):- is_ftVar(X),!,write_nbsp,write_nbsp,print(X). -writeg9(V):- pp_no_nl(V). - - -/* -writeg5(V):- is_simple_2x2(V),!,print_simple_2x2(writeg8,V). -writeg5(V):- is_gridoid(V),!,call_w_pad_prev(2,writeg9(V)). -writeg5(V):- is_list(V),nl_if_needed,write('['),my_maplist(writeg5,V),write(']'). -*/ -arg1_near(Vars,Goal,Nth):- tc_arg(1,Goal,PreSort),nth1(Nth,Vars,E),E==PreSort,!. -arg1_near(_VarsC,Goal,PreSort):- tc_arg(1,Goal,PreSort),!. -arg1_near(_VarsC,Goal,Goal). - -sort_goals(Goals,VarsC,SGoals):- predsort(sort_on(arg1_near(VarsC)),Goals,SGoals). - -/* - -writeg0(Obj):- is_object(Obj),pp(Obj),!. -writeg0(O):- writeg00(O). - -writeg00(Term):- - maybe_term_goals(Term,TermC,Goals), - writeg00(TermC), call_w_pad(2,writeg00(Goals)),!. -writeg00(N=V):- nl_if_needed,nonvar(N), pp_no_nl(N),writeln(' = '), !, call_w_pad(2,writeg00(V)). -writeg00(O):- compound(O),compound_name_arguments(O,F,[A]),!,call_w_pad(2,((writeq(F),write('('),writeg3(A),write(')')))). -writeg00(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). -writeg00([H|T]):- compound(H),H=(_=_), my_maplist(writeg0,[H|T]). -writeg00([H|T]):- is_list(T),call_w_pad(2,((nl,write('['),writeg2(H),my_maplist(writeg0,T),write(']'),nl))). -%writeg0(Term):- \+ ground(Term),!, \+ \+ (numbervars(Term,99799,_,[singletons(true)]), -% subst(Term,'$VAR'('_'),'$VAR'('_____'),TermO), writeg0(TermO)). -%writeg0(V):- \+ is_list(V),!,writeq(V),nl_now. -writeg00(V):- \+ is_list(V),!,pp(V). -writeg00(X):- call_w_pad(2,pp(X)). - -writeg1(N=V):- is_gridoid(V),!,print_grid(N,V),call_w_pad(2,(my_maplist(writeg1,V))). -writeg1(X):- nl_if_needed,writeg2(X),!,write_nbsp,!. -writeg2(S):- term_contains_ansi(S), !, write_keeping_ansi_mb(S). -writeg2(X):- is_ftVar(X),!,print(X). -writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(true)]),!. -%writeg2(X):- write_term(X,[quoted(true),quote_non_ascii(true),portrayed(false),nl(false),numbervars(false)]),!. -%writeg1(X):- nl_if_needed,writeg(X). -writeg2(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -writeg2(X):- writeq(X),!. -writeg3(X):- is_list(X),X\==[],X=[_,_|_],!,writeg(X). -writeg3(X):- writeg2(X). -*/ - -% Nov 9th, 1989 -/* -pp_hook_g1(T):- - nb_current('$portraying',Was) - -> ((member(E,Was), T==E) -> ptv2(T) ; locally(b_setval('$portraying',[T|Was]),ptv0(T))) - ; locally(b_setval('$portraying',[T]),ptv0(T)). -*/ - -%pp_hook_g(G):- compound(G),ppt(G),!. -%pp_hook_g(G):- ppt(G),!. - - -strip_vspace(S,Stripped):- string_concat(' ',SS,S),!,strip_vspace(SS,Stripped). -strip_vspace(S,Stripped):- string_concat(SS,' ',S),!,strip_vspace(SS,Stripped). -strip_vspace(S,Stripped):- string_concat('\n',SS,S),!,strip_vspace(SS,Stripped). -strip_vspace(S,Stripped):- string_concat(SS,'\n',S),!,strip_vspace(SS,Stripped). -strip_vspace(S,Stripped):- string_concat('\t',SS,S),!,strip_vspace(SS,Stripped). -strip_vspace(S,Stripped):- string_concat(SS,'\t',S),!,strip_vspace(SS,Stripped). - -strip_vspace(S,Stripped):- replace_in_string([" \n"="\n","( "="( ","(\n"="( "],S,S2),S2\==S,!,strip_vspace(S2,Stripped). -%strip_vspace(S,Stripped):- split_string(S, "", "\t\r\n", [Stripped]). -strip_vspace(S,S). - - -print_nl(P):- nl_if_needed, wots_hs(SS,pp_no_nl(P)), maybe_color(SS,P),nl_if_needed. - -color_write(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -color_write(P):- wots_hs(SS,write(P)), maybe_color(SS,P). - -write_keeping_ansi_mb(P):- is_maybe_bold(P,write_keeping_ansi(P)). - -is_maybe_bold(P):- sformat(S,'~w',[P]),atom_contains(S,'stOF'). - -is_maybe_bold(P,G):- is_maybe_bold(P),!, underline_print(bold_print(G)). -is_maybe_bold(_P,G):- call(G). - -pp_msg_color(P,C):- compound(P),pc_msg_color(P,C),!. -pp_msg_color(P,C):- must_det_ll(mesg_color(P,C)). -pc_msg_color(iz(P),C):- pp_msg_color(P,C). -pc_msg_color(link(P,_,_),C):- pp_msg_color(P,C). -pc_msg_color(link(P,_),C):- pp_msg_color(P,C). -pc_msg_color((_->P),C):- pp_msg_color(P,C). -pc_msg_color([P|_],C):- pp_msg_color(P,C). -pc_msg_color(diff(P),C):- pp_msg_color(P,C). - -%:- meta_predicate(wots_hs(0)). -%wots_hs(G):- wots_hs(S,G),write(S). - -:- meta_predicate(wots_ansi(-,0)). -wots_ansi(S,Goal):- wots(S,woto_ansi(Goal)). -:- meta_predicate(wots_ansi(-,0)). -wots_html(S,Goal):- wots(S,woto_html(Goal)). - -:- meta_predicate(woto_ansi(0)). -woto_ansi(Goal):- with_toplevel_pp(ansi,Goal). -:- meta_predicate(woto_html(0)). -woto_html(Goal):- with_toplevel_pp(http,Goal). - -:- meta_predicate(wots_hs(-,0)). -%wots_hs(S,G):- \+ wants_html,!,wots(S,G). -%wots_hs(S,G):- wots(S,G),!. -wots_hs(S,G):- wots(SS,G),notrace(remove_huge_spaces(SS,S)). -:- meta_predicate(wots_vs(-,0)). -wots_vs(OOO,G):- wots(S,G),notrace(fix_vspace(S,OOO)). - -fix_vspace(S,OOO):- - strip_vspace(S,SS), (atom_contains(SS,'\n') -> - wots_hs(SSS,(nl_now,write(' '),write(SS),nl_now));SSS=SS), - remove_huge_spaces(SSS,OOO). - - -write_tall(L):- is_list(L),!,my_maplist(write_tall,L). -write_tall(E):- wots_vs(S,wqs_c(E)),writeln(S). -write_wide(L):- is_list(L),!,my_maplist(write_wide,L). -write_wide(E):- wots_vs(S,wqs_c(E)),write(S),write_nbsp. - -p_to_br(S,SS):- fix_br_nls(S,S0), - cr_to_br(S0,SSS), - replace_in_string(['

    '='
    ','
    '='
    ','

    '=' ','

    '='
    ','

    '='
    '],SSS,SSSS), - cr_to_br(SSSS,SS). - -cr_to_br(S,SSS):- wants_html,!,cr_to_br_html(S,SSS). -cr_to_br(S,SSS):- cr_to_br_ansi(S,SSS). - -cr_to_br_html(S,SSS):- replace_in_string(['\r\n'='
    ','\r'='
    ','\n'='
    '],S,SSS). -cr_to_br_ansi(S,SSS):- replace_in_string(['
    '='\n',' '=' '],S,SSS). - -fix_br_nls(S,O):- replace_in_string( - ['
    \n'='
    ','
    \n'='
    ','

    \n'='

    ','

    \n'='

    ','

    \n'='

    ', - '\n
    '='
    ','\n
    '='
    ','\n

    '='

    ','\n

    '='

    ','\n

    '='

    '],S,O). - -remove_huge_spaces(S,O):- notrace((fix_br_nls(S,SS),!,p_to_br(SS,O))),!. -/* -remove_huge_spaces(S,O):- fix_br_nls(S,S0), - replace_in_string([' '=' ', - ' '=' ', - ' '=' ', - ' '=' ', - ' '=' ', - ' '=' ', - ' '=' ', - '\t'=' ', - ' '=' '],S0,SS),p_to_br(SS,O). -*/ - - -wqs_l(H):- \+ is_list(H),!, wqs(H). -wqs_l(H):- wqs(H). - -wqs(P):- wots_hs(SS,wqs0(P)), maybe_color(SS,P). -wqs(C,P):- ansicall(C,wqs0(P)),!. - -wqs0(X):- plain_var(X), wqs(plain_var(X)),!. -wqs0(X):- plain_var(X), !, wqs(plain_var(X)), ibreak. -wqs0(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). -wqs0(C):- is_colorish(C),color_print(C,C),!. -wqs0(G):- is_vm_map(G), !, write_map(G,'wqs'). -wqs0(X):- var(X), !, get_attrs(X,AVs),!,writeq(X),write('/*{'),print(AVs),write('}*/'). -wqs0(X):- attvar(X), !, wqs(attvar(X)). -wqs0(nl_now):- !, nl_now. wqs0(X):- X=='', !. wqs0(X):- X==[], !. -wqs0(X):- is_grid(X), !, print_grid(X). -wqs0(G):- compound(G), G = call(C),callable(C),!,call(C). -wqs0([T]):- !, wqs(T). -wqs0([H|T]):- string(H), !, write(H), write_nbsp, wqs(T). -wqs0([H|T]):- compound(H),skip(_)=H, !,wqs(T). -wqs0([H|T]):- wqs(H), need_nl(H,T), wqs(T), !. -wqs0(X):- is_object(X), tersify1(X,Q), X\==Q,!, wqs(Q). -wqs0(X):- is_object(X), show_shape(X),!. -wqs0(X):- string(X), atom_contains(X,'~'), catch((sformat(S,X,[]),color_write(S)),_,fail),!. -wqs0(X):- string(X), !, color_write(X). -%wqs([H1,H2|T]):- string(H1),string(H2),!, write(H1),write_nbsp, wqs([H2|T]). -%wqs([H1|T]):- string(H1),!, write(H1), wqs(T). -%wqs([H|T]):- compound(H),!, writeq(H), wqs(T). - -wqs0(call(C)):- !, call(C). -wqs0(X):- \+ compound(X),!, write_nbsp, write(X). -wqs0(C):- compound(C),wqs1(C),!. -wqs0(C):- wqs2(C). -%wqs(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). - -wqs2(S):- term_contains_ansi(S), !, write_nbsp, write_keeping_ansi_mb(S). -%wqs2(P):- wants_html,!,pp(P). - -:- thread_local(t_l:wqs_fb/1). -wqs2(X):- t_l:wqs_fb(P1),call(P1,X),!. -%wqs2(X):- with_wqs_fb(writeq,X). -wqs2(X):- with_wqs_fb(writeq,print(X)),!. -%wqs2(X):- with_wqs_fb(writeq,((write_nbsp,write_term(X,[quoted(true)])))). - -with_wqs_fb(FB,Goal):- - locally(t_l:wqs_fb(FB),Goal). - - -as_arg_str(C,S):- wots_vs(S,print(C)). - -arg_string(S):- string(S),!. -arg_string(S):- term_contains_ansi(S),!. - -wqs1(C):- \+ compound(C),!,wqs0(C). -wqs1(S):- term_is_ansi(S), !, write_keeping_ansi_mb(S). - -wqs1(format(C,N)):- catch((sformat(S,C,N),color_write(S)),_,fail),!. -wqs1(writef(C,N)):- !, writef(C,N). -wqs1(q(C)):- \+ arg_string(C),wots_hs(S,writeq(C)),color_write(S),!. -wqs1(g(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs1(C))),print(g(S)),!. -wqs1(print_ss(C)):- \+ arg_string(C), wots_vs(S,print_ss(C)),wqs1(print_ss(S)),!. -wqs1(b(C)):- \+ arg_string(C), wots_vs(S,bold_print(wqs1(C))),color_write(S). -wqs1(T):- \+ is_list(T), term_contains_ansi(T),!,write_keeping_ansi_mb(T). -wqs1(norm(C)):- writeq(norm(C)),!. -wqs1(grid_rep(norm,C)):- writeq(grid_rep(norm,C)),!. -wqs1(grid(C)):- writeq(grid(C)),!. -wqs1(rhs(RHS)):- nl_now,wqnl(rhs(RHS)),nl_now. -%wqs1(grid_ops(norm,C)):- writeq(norm(C)),!. -%norm_grid - -wqs1(pp(P)):- wots_vs(S,pp_no_nl(P)),write((S)). -wqs1(ppt(P)):- wots_vs(S,ppt_no_nl(P)),write((S)). -wqs1(wqs(P)):- wots_vs(S,wqs(P)),write((S)). -wqs1(wqs(C,P)):- wots_vs(S,wqs(P)),color_print(C,S). - -wqs1(vals(C)):- writeq(vals(C)),!. -%wqs1(colors_cc(C)):- \+ arg_string(C), as_arg_str(C,S),wqs(colorsz(S)). -wqs1(io(C)):- \+ arg_string(C),wots_vs(S,bold_print(wqs(C))),write(io(S)). - -wqs1(uc(C,W)):- !, write_nbsp, color_print(C,call(underline_print(format("\t~@",[wqs(W)])))). -wqs1(cc(C,N)):- is_color(C),!,color_print(C,call(writeq(cc(C,N)))). -wqs1(write_nav_cmd(C,N)):- !, write_nav_cmd(C,N). - -wqs1(-(C,N)):- is_color(C),!,color_print(C,call(writeq(C))), write('-'), wqs(N). -wqs1(cc(C,N)):- N\==0,attvar(C), get_attrs(C,PC), !, wqs(ccc(PC,N)). -wqs1(cc(C,N)):- N\==0,var(C), sformat(PC,"~p",[C]), !, wqs(ccc(PC,N)). -wqs1(cc(C,N)):- \+ arg_string(C), wots_hs(S,color_print(C,C)), wqs(cc(S,N)). -wqs1(color_print(C,X)):- is_color(C), !, write_nbsp, color_print(C,X). -wqs1(color_print(C,X)):- \+ plain_var(C), !, write_nbsp, color_print(C,X). -wqs1(X):- into_f_arg1(X,_,Arg),is_gridoid(Arg),area_or_len(Arg,Area),Area<5,writeq(X),!. -% wqs1(C):- callable(C), is_wqs(C),wots_vs(S,catch(C,_,fail)),write((S)). -wqs1(X):- is_gridoid_arg1(X), print_gridoid_arg1(X). - -into_f_arg1(X,F,Arg):- compound(X), compound_name_arguments(X,F,[Arg]), compound(Arg). - -is_gridoid_arg1(X):- into_f_arg1(X,_F,Arg),is_gridoid(Arg). -print_gridoid_arg1(X):- into_f_arg1(X,F,Arg),print_gridoid_arg1(F,Arg). - -print_gridoid_arg1(F,Arg):- \+ wants_html,!, wots_vs(VS,wqs(Arg)), writeq(F),write('(`'),!, print_with_pad(write(VS)),write('`)'). -print_gridoid_arg1(F,Arg):- wots_vs(VS,wqs(Arg)), - with_tag_style(span,"display: inline; white-space: nowrap",(writeq(F),write('({'),!,write(VS),write('})'))). - - -nl_needed(N):- line_position(current_output,L1),L1>=N. - -nl_now :- wants_html,!,nl_if_needed_ansi. -nl_now :- nl. - -ansi_in_pre:- current_predicate(in_pre/0),in_pre. -nl_if_needed :- ansi_main,!, format('~N'). -nl_if_needed :- ansi_in_pre,ignore((nl_needed(11),write('
    '))),!. -nl_if_needed :- wants_html,!,ignore((nl_needed(11),write('
    \n'))). -nl_if_needed :- format('~N'). -nl_if_needed_ansi :- \+ ansi_main, wants_html,!. -nl_if_needed_ansi :- nl_if_needed. - -write_nbsp:- ansi_main,!,write(' '). -write_nbsp:- wants_html,!,write(' '). -write_nbsp:- write(' '). - -is_breaker(P):- compound(P),functor(P,_,A), A>=3. - -last_f(H,F):- \+ compound(H),data_type(H,F). -last_f(H,F/A):- compound(H),!,functor(H,F,A). - -need_nl(_,_):- line_position(current_output,L1),L1<40,!. -need_nl(_,_):- line_position(current_output,L1),L1>160,!,nl_if_needed. -need_nl(H0,[H1,H2|_]):- H1\=cc(_,_), last_f(H0,F0),last_f(H1,F1),last_f(H2,F2), F0\==F1, F1==F2,!,format('~N '). -%need_nl(H0,[H1|_]):- last_f(H0,F0),last_f(H1,F1), F0==F1, !, write_nbsp. -need_nl(_,_). -/* -need_nl(_Last,[H|_]):- last_f(H,F), - once(nb_current(last_h,cc(LF,C));(LF=F,C=0)), - (LF==F-> (write_nbsp, plus(C,1,CC), nb_setval(last_h,cc(F,CC))) ; ((C>2 -> nl_now ; write_nbsp), nb_setval(last_h,cc(F,0)))). - -need_nl(_,_):- wants_html,!,write_nbsp. -%need_nl(_,_):- !,write_nbsp. -need_nl(H,[P|_]):- \+ is_breaker(H),is_breaker(P),line_position(user_output,L1),L1>80,nl_now,bformatc1('\t\t'). -need_nl(_,_):- line_position(user_output,L1),L1>160,nl_now,bformatc1('\t\t'). -need_nl(_,_). -*/ - -dash_chars:- wants_html,!,section_break. -dash_chars:- dash_chars(40),!. - -dash_chars(_):- wants_html,!,section_break. -dash_chars(H):- integer(H), dash_border(H). -dash_chars(S):- nl_if_needed,dash_chars(60,S),nl_if_needed_ansi. -dash_chars(_,_):- wants_html,!,section_break. -dash_chars(H,_):- H < 1,!. -dash_chars(H,C):- forall(between(0,H,_),bformatc1(C)). - -%section_break:- wants_html,!,write('

    '). -section_break. -%dash_uborder_no_nl_1:- line_position(current_output,0),!, bformatc1('\u00AF\u00AF\u00AF '). -%dash_uborder_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('\u00AF\u00AF\u00AF '). -dash_uborder_no_nl_1:- bformatc1('\u00AF\u00AF\u00AF '). -dash_uborder_no_nl_1:- uborder(Short,Long),!, bformatc1(Short),bformatc1(Long),write_nbsp. -dash_uborder_no_nl(1):- !, dash_uborder_no_nl_1. -dash_uborder_no_nl(Width):- WidthM1 is Width-1, uborder(Short,Long),write_nbsp, write(Short),dash_chars(WidthM1,Long),!. -dash_uborder_no_nl(Width):- WidthM1 is Width-1, write_nbsp, bformat('\u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'),!. -dash_uborder_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' \u00AF'),dash_chars(WidthM1,'\u00AF\u00AF'). - -dash_uborder(Width):- nl_if_needed,dash_uborder_no_nl(Width),nl_now. - -uborder('-','--'):- stream_property(current_output,encoding(utf8)),!. -uborder('\u00AF','\u00AF\u00AF'):- !. %stream_property(current_output,encoding(text)). -%uborder('-','--'). - -dash_border_no_nl_1:- line_position(current_output,0),!, bformatc1(' ___ '). -dash_border_no_nl_1:- line_position(current_output,W),W==1,!, bformatc1('___ '). -dash_border_no_nl_1:- bformatc1(' ___ '). - -%dash_border_no_nl(Width):- write(''),dash_chars(Width,'_'),write_nbsp,!. - -dash_border_no_nl(Width):- nl_if_needed, WidthM1 is Width-1, bformatc1(' _'),dash_chars(WidthM1,'__'). - -dash_border(Width):- !, dash_border_no_nl(Width),nl_now,!. - -functor_test_color(pass,green). -functor_test_color(fail,red). -functor_test_color(warn,yellow). - -arcdbg(G):- is_vm_map(G), !, write_map(G,'arcdbg'). -arcdbg(G):- compound(G), compound_name_arity(G,F,_),functor_test_color(F,C), - wots_hs(S,print(G)),color_print(C,S),!,nl_if_needed_ansi. -arcdbg(G):- u_dmsg(G). - - -%user:portray(Grid):- ((\+ tracing, is_group(Grid),print_grid(Grid))). -%user:portray(Grid):- quietlyd((is_object(Grid),print_grid(Grid))). -n_times(N,Goal):- forall(between(1,N,_),ignore(Goal)). -banner_lines(Color):- banner_lines(Color,1). -banner_lines(Color,N):- wants_html,!,format('\n
    \n',[N,Color]),!. -banner_lines(Color,N):- - must_det_ll((nl_if_needed, - n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, - n_times(N,color_print(Color,'=================================================')),nl_now, - n_times(N,color_print(Color,'-------------------------------------------------')),nl_now, - n_times(N,color_print(Color,'=================================================')),nl_now, - n_times(N,color_print(Color,'-------------------------------------------------')),nl_now)),!. - -print_sso(A):- ( \+ compound(A) ; \+ (sub_term(E,A), is_gridoid(E))),!, u_dmsg(print_sso(A)),!. -print_sso(A):- grid_footer(A,G,W),writeln(print_sso(W)), print_grid(W,G),!. -print_sso(A):- must_det_ll(( nl_if_needed, into_ss_string(A,SS),!, - SS = ss(L,Lst), - writeln(print_sso(l(L))), - forall(member(S,Lst),writeln(S)),nl_if_needed)),!. - -var_or_number(V):- var(V),!. -var_or_number(V):- integer(V),!. - - -find_longest_len(SL,L):- find_longest_len(SL,10,L),!. -find_longest_len([],L,L). -find_longest_len([S|SS],N,L):- print_length(S,N2),max_min(N,N2,NM,_), - find_longest_len(SS,NM,L). - -:- meta_predicate( print_with_pad(0)). -:- export( print_with_pad/1). -/*print_with_pad(Goal):- - - (line_position(current_output,O);O=0),!, - O1 is O+1, - call_w_pad(O1,Goal). -*/ -print_with_pad(Goal):-(line_position(current_output,O);O=0),!, O1 is O+1,wots(S,Goal),print_w_pad(O1,S). - - -into_s(Text,S):- notrace(catch(text_to_string(Text,S),_,fail)),!. -into_s(Obj,S):- wots_hs(S,pp(Obj)),!. - -print_w_pad(Pad,Text):- into_s(Text,S), atomics_to_string(L,'\n',S)-> my_maplist(print_w_pad0(Pad),L). -print_w_pad0(Pad,S):- nl_if_needed,dash_chars(Pad,' '), write(S). - - -:- meta_predicate(call_w_pad_prev(+,0)). -call_w_pad_prev(Pad,Goal):- wots_hs(S,Goal), print_w_pad(Pad,S). - -%call_w_pad(N,Goal):- wants_html,!,format('',[N]),call_cleanup(call(Goal),write('')). -:- meta_predicate(call_w_pad(+,0)). -call_w_pad(_N,Goal):- wants_html,!,format('',[]),call_cleanup(call(Goal),write('')). -call_w_pad(N,Goal):- nl_if_needed,wots_hs(S,dash_chars(N,' ')),!,pre_pend_each_line(S,Goal). -maybe_print_pre_pended(Out,Pre,S):- atomics_to_string(L,'\n',S), maybe_print_pre_pended_L(Out,Pre,L). -maybe_print_pre_pended_L(Out,_,[L]):- write(Out,L),!,flush_output(Out). -maybe_print_pre_pended_L(Out,Pre,[H|L]):- write(Out,H),nl(Out),!,write(Out,Pre),maybe_print_pre_pended_L(Out,Pre,L). - -%pre_pend_each_line(_,Goal):- !,ignore(Goal). -:- meta_predicate(pre_pend_each_line(+,0)). -pre_pend_each_line(Pre,Goal):- write(Pre),pre_pend_each_line0(Pre,Goal). -pre_pend_each_line0(Pre,Goal):- - current_output(Out), - current_predicate(predicate_streams:new_predicate_output_stream/2),!, - call(call,predicate_streams:new_predicate_output_stream([Data]>>maybe_print_pre_pended(Out,Pre,Data),Stream)), - arc_set_stream(Stream,tty(true)), - %arc_set_stream(Stream,buffer(false)), - %undo(ignore(catch(close(Stream),_,true))),!, - setup_call_cleanup(true, - (with_output_to_each(Stream,once(Goal)),flush_output(Stream)), - ignore(catch(close(Stream),_,true))),!. -pre_pend_each_line0(Pre,Goal):- - with_output_to_each(string(Str),Goal)*->once((maybe_print_pre_pended(current_output,Pre,Str),nl_if_needed)). - - - -end_of_file. - - - -run_source_code(ShareVars, SourceCode, Vs, QQ):- - QQ = source_buffer(SourceCode,Vs),!, - %print(term=Sourcecode -> vs=Vs), - maplist(share_vars(Vs),ShareVars), - (\+ is_list(SourceCode) - -> mort(SourceCode) - ; maplist(mort,SourceCode)). - -run_source_code(ShareVars, Vs, QQ):- - QQ = source_buffer(SourceCode,Vs),!, - %print(term=Sourcecode -> vs=Vs), - maplist(share_vars(Vs),ShareVars), - (\+ is_list(SourceCode) - -> mort(SourceCode) - ; maplist(mort,SourceCode)). - - -%vars_to_dictation([_=Value|Gotten],TIn,TOut):- is_vm_map(Value),!, vars_to_dictation(Gotten,TIn,TOut). - -vars_to_dictation([Name=Value|Gotten],TIn,TOut):- !, - my_assertion(atom(Name)), - vars_to_dictation(Gotten,TIn,TMid), - to_prop_name(Name,UName), - tio_tersify(Value,ValueT),!, - put_dict(UName,TMid,ValueT,TOut). - -vars_to_dictation([NameValue|Gotten],TIn,TOut):- !, - vars_to_dictation(Gotten,TIn,TMid), - to_prop_name(NameValue,UName), - tio_tersify(NameValue,ValueT),!, - put_dict(UName,TMid,ValueT,TOut). - -vars_to_dictation([NameValue|Gotten],TIn,TOut):- compound(NameValue),compound_name_arguments(NameValue,Name,Value),!, - vars_to_dictation([Name=Value|Gotten],TIn,TOut). - -vars_to_dictation([],T,T). - -tio_tersify(Value,ValueT):- is_grid(Value),!,ValueT=_. -tio_tersify(Value,Value). -:- export(copy_qq_//1). - -copy_qq_([]) --> []. -copy_qq_([C|Cs]) --> [C], copy_qq_(Cs). - -:- export(copy_qq//1). -muarc:copy_qq(A) --> copy_qq_(Cs), {atom_codes(A, Cs)}. - -to_prop_name(Name=_,UName):- nonvar(Name),!,to_prop_name(Name,UName). -to_prop_name(Name,UName):- compound(Name),compound_name_arity(Name,F,_),!,to_prop_name(F,UName). -to_prop_name(Name,UName):- to_case_breaks(Name,Breaks),xtis_to_atomic(Breaks,UName). - -xtis_to_atomic([xti(Str,upper),xti(StrL,lower)|Breaks],StrO):- string_upper(Str,Str), - atom_chars(Str,CharsList),append(Left,[U],CharsList), - name(S1,Left),atomic_list_concat([S1,'_',U,StrL],'',StrUL),!, - xtis_to_atomic([xti(StrUL,lower)|Breaks],StrO). -xtis_to_atomic([],''). -xtis_to_atomic([xti(Str,_)],Lower):- downcase_atom(Str,Lower). -xtis_to_atomic([XTI|Breaks],Atomic):- - xtis_to_atomic([XTI],S1),xtis_to_atomic(Breaks,S2),!,atomic_list_concat([S1,S2],'_',Atomic). - -share_vars(Vs,Name=Value):- member(VName=VValue,Vs),VName==Name,!,(Value=VValue->true;trace_or_throw(cant(share_vars(Vs,Name=Value)))). -share_vars(_,Name=_):- string_concat('_',_,Name),!. % Hide some vars -share_vars(V,Name=Value):- fbug(missing(share_vars(V,Name=Value))),!. - - - -parse_expansions(_,Vs,Vs,Src,Src):- \+ compound(Src),!. -parse_expansions(_,Vs0,Vs,dont_include(Var),nop(dont_include(Var))):- - dont_include_var(Vs0,Vs,Var),!. -parse_expansions(F, Vs0,Vs,[Src0|Sourcecode0],[Src|Sourcecode]):- !, - parse_expansions(F, Vs0, Vs1, Src0, Src), - parse_expansions(F, Vs1, Vs, Sourcecode0, Sourcecode). -parse_expansions(FF, Vs0, Vs, Cmpd0, Cmpd):- - compound_name_arguments(Cmpd0,F,Args0), - parse_expansions([F|FF], Vs0, Vs, Args0,Args), - compound_name_arguments(Cmpd,F,Args). - -dont_include_var(Vs0,Vs,Var):- select(_=VV,Vs0,Vs),VV==Var,!. -dont_include_var(Vs,Vs,_). - -append_sets(Sets,Set):- append(Sets,List),list_to_set(List,Set). -append_sets(Set1,Set2,Set):- append(Set1,Set2,List),list_to_set(List,Set). -flatten_sets(Sets,Set):- flatten(Sets,List),list_to_set(List,Set). - -print_prop_val(N=V):- to_prop_name(N,P),format('~N\t\t'),print(P=V),nl. - - -ignore_numvars(Name='$VAR'(Name)). - - diff --git a/metta_vspace/pyswip_lng/metta_utils.pl b/metta_vspace/pyswip_lng/metta_utils.pl new file mode 120000 index 00000000..22aa4874 --- /dev/null +++ b/metta_vspace/pyswip_lng/metta_utils.pl @@ -0,0 +1 @@ +../pyswip/metta_utils.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/swi_flybase.pl b/metta_vspace/pyswip_lng/swi_flybase.pl deleted file mode 100755 index 12a4e619..00000000 --- a/metta_vspace/pyswip_lng/swi_flybase.pl +++ /dev/null @@ -1,2 +0,0 @@ - -:- ensure_loaded(flybase_main). \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/swi_flybase.pl b/metta_vspace/pyswip_lng/swi_flybase.pl new file mode 120000 index 00000000..e976b1de --- /dev/null +++ b/metta_vspace/pyswip_lng/swi_flybase.pl @@ -0,0 +1 @@ +../pyswip/swi_flybase.pl \ No newline at end of file diff --git a/metta_vspace/pyswip_lng/swi_support.pl b/metta_vspace/pyswip_lng/swi_support.pl deleted file mode 100755 index 1854606e..00000000 --- a/metta_vspace/pyswip_lng/swi_support.pl +++ /dev/null @@ -1,155 +0,0 @@ - -:- set_prolog_flag(verbose_autoload, false). -:- set_prolog_flag(verbose, silent). -:- set_prolog_flag(verbose_load, silent). -:- assert((user:'$exported_op'(_,_,_):- fail)). -:- abolish((system:'$exported_op'/3)). -:- assert((system:'$exported_op'(_,_,_):- fail)). - -fbug(P) :- format("~N"), current_predicate(write_src/1),with_output_to(user_error,in_cmt(pp_fb(P))),!. -fbug(N=V) :- nonvar(N), !, fbdebug1(N:-V). -fbug(V) :- compound(V),functor(V,F,_A),!,fbdebug1(F:-V). -fbug(V) :- fbdebug1(debug:-V). -fbdebug1(Message) :- - % ISO Standard: flush_output/1 - flush_output(user_output), - flush_output(user_error), - catch(portray_clause(user_error,Message,[]),_,catch_ignore(format(user_error, "~n/* ~q. */~n", [Message]))), - %format(user_error, "~n/* ~p. */~n", [Message]), - flush_output(user_error). - - -swi_only(_):- is_scryer,!,fail. -swi_only(G):- call(G). -is_scryer:- \+ current_prolog_flag(libswipl,_). - - -:- create_prolog_flag(max_per_file,inf,[keep(true),access(read_write),type(term)]). -:- create_prolog_flag(max_disk_cache,inf,[keep(true),access(read_write),type(term)]). -:- create_prolog_flag(samples_per_million,inf,[keep(true),access(read_write),type(term)]). - -with_cwd(Dir,Goal):- Dir == '.',!,setup_call_cleanup(working_directory(X, X), Goal, working_directory(_,X)). -with_cwd(Dir,Goal):- setup_call_cleanup(working_directory(X, Dir), Goal, working_directory(_,X)). - -with_option([],G):-!,call(G). -with_option([H|T],G):- !, with_option(H,with_option(T,G)). -with_option(N=V,G):-!, with_option(N,V,G). -with_option(NV,G):- compound(NV), NV =..[N,V],!,with_option(N,V,G). -with_option(N,G):- with_option(N,true,G). - -with_option(N,V,G):- option_value(N,W), - setup_call_cleanup(set_option_value(N,V),G, set_option_value(N,W)). - - -was_option_value(N,V):- nb_current(N,VV), !,V=VV. -was_option_value(N,V):- current_prolog_flag(N,VV),!,V=VV. -was_option_value(N,V):- prolog_load_context(N,VV),!,V=VV. - -option_else(N,V,Else):- notrace(option_else0(N,V,Else)). -option_else0( N,V,_Else):- was_option_value(N,VV),!,VV=V. -option_else0(_N,V, Else):- !,V=Else. - -option_value(N,V):- notrace(option_value0(N,V)). -option_value0( N,V):- nonvar(V), option_value0( N,VV), !, p2m(VV,V1),p2m(V,V2),!,V1=V2.%equal_enough(V1,V2). -option_value0( N,V):- option_else0( N,V ,[]). - -p2mE(NA,NA):- \+ atom(NA),!. -p2mE(false,'False'). -p2mE(true,'True'). -p2mE(E,E). -set_option_value(N,V):- - set_option_value0(N,V). -set_option_value0(N,V):- - p2mE(V,VV),!, - catch(nb_setval(N,VV),E,fbug(E)), - catch(create_prolog_flag(N,V,[keep(false),access(read_write), type(term)]),E,fbug(E)), - catch(set_prolog_flag(N,V),E,fbug(E)),!. - -kaggle_arc:- \+ exists_directory('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/'), !. -%kaggle_arc:- !. -kaggle_arc:- - with_option(argv,['--libonly'], - with_cwd('/opt/logicmoo_workspace/packs_sys/logicmoo_agi/prolog/kaggle_arc/', - ensure_loaded(kaggle_arc))). - -%:- ensure_loaded((read_obo2)). - -%:- kaggle_arc. - -symbol(X):- atom(X). -symbolic(X):- atomic(X). -symbol_number(S,N):- atom_number(S,N). -symbol_string(S,N):- atom_string(S,N). -symbol_chars(S,N):- atom_chars(S,N). -symbol_length(S,N):- atom_length(S,N). -symbol_concat(A,B,C):- atom_concat(A,B,C). -symbolic_list_concat(A,B,C):- atomic_list_concat(A,B,C). -symbol_contains(T,TT):- atom_contains(T,TT). - -:- prolog_load_context(file, File), - absolute_file_name('../../data/ftp.flybase.org/releases/current/',Dir,[relative_to(File),file_type(directory)]), - asserta(ftp_data(Dir)). - -:- prolog_load_context(file, File), - absolute_file_name('./',Dir,[relative_to(File),file_type(directory)]), - asserta(pyswip_dir(Dir)). - - -:- prolog_load_context(directory, Dir), - asserta(user:library_directory(Dir)), - asserta(pyswip_metta_dir(Dir)). - -metta_python:- ensure_loaded(library(metta_python)). -:- if( (fail, \+ current_predicate(must_det_ll/1))). -% Calls the given Goal and throws an exception if Goal fails. -% Usage: must_det_ll(+Goal). -must_det_ll(M:Goal) :- !, must_det_ll(M,Goal). -must_det_ll(Goal) :- must_det_ll(user,Goal). - -must_det_ll(_M,Goal) :- var(Goal),!,throw(var_must_det_ll(Goal)),!. -must_det_ll(M,Goal) :- var(M),!,strip_module(Goal,M,NewGoal),!,must_det_ll(M,NewGoal). -must_det_ll(M,(GoalA,GoalB)) :- !, must_det_ll(M,GoalA), must_det_ll(M,GoalB). -must_det_ll(M,(GoalA->GoalB;GoalC)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). -must_det_ll(M,(GoalA*->GoalB;GoalC)) :- !, (call_ll(M,GoalA)*-> must_det_ll(M,GoalB) ; must_det_ll(M,GoalC)). -must_det_ll(M,(GoalA->GoalB)) :- !, (call_ll(M,GoalA)-> must_det_ll(M,GoalB)). -must_det_ll(_,M:Goal) :- !, must_det_ll(M,Goal). -must_det_ll(M,Goal) :- - % Call Goal, succeed with true if Goal succeeds. - M:call(Goal) -> true ; % If Goal fails, throw an exception indicating that Goal failed. - throw(failed(Goal)). - -call_ll(_M,Goal):- var(Goal),!,throw(var_call_ll(Goal)),!. -call_ll(M,Goal):- var(M),!,strip_module(Goal,M,NewGoal),!,call_ll(M,NewGoal). -call_ll(M,Goal):- M:call(Goal). - -:- endif. - - -:- if( \+ current_predicate(if_t/2)). -if_t(If,Then):- call(If)->call(Then);true. -:-endif. - -:- if( \+ current_predicate(atom_contains/2)). -atom_contains(Atom1, SubAtom) :- sub_atom(Atom1, _Before, _, _After, SubAtom). -:- endif. - -:- if( \+ current_predicate(nop/1)). -nop(_). -:- endif. - -:- if( \+ current_predicate(catch_ignore/1)). -catch_ignore(G):- ignore(catch(G,E,catch_i((nl,writeq(causes(G,E)),nl)))). -:- endif. - -:- if( \+ current_predicate(catch_i/1)). -catch_i(G):- ignore(catch(G,_,true)). -:- endif. - -:- if( \+ current_predicate(add_history1/1)). -add_history1(_). -:- endif. - -:- if( \+ current_predicate(add_history/1)). -add_history(_). -:- endif. - diff --git a/metta_vspace/pyswip_lng/swi_support.pl b/metta_vspace/pyswip_lng/swi_support.pl new file mode 120000 index 00000000..ecdcb228 --- /dev/null +++ b/metta_vspace/pyswip_lng/swi_support.pl @@ -0,0 +1 @@ +../pyswip/swi_support.pl \ No newline at end of file diff --git a/scripts/subtest.sh b/scripts/subtest.sh new file mode 100755 index 00000000..e59e195a --- /dev/null +++ b/scripts/subtest.sh @@ -0,0 +1,40 @@ +#!/bin/bash + +# Assign the first argument to TEST_DIR +TEST_DIR=$1 + +# Remove a specific file and find and delete certain files +cat /dev/null > /tmp/SHARED.UNITS +find "$TEST_DIR" --name "*metta.html" -delete + +# Clear the screen and run the MeTTa program with some arguments +clear +./MeTTa $2 "$TEST_DIR" --clean --test --timeout=25 + +# Create a directory named with the current date and time (YYYYMMDD_HHMMSS format) +CURRENT_TIME=$(date +"%Y%m%d_%H%M%S${2}") +mkdir "$CURRENT_TIME" + +# Copy the contents of the specified directory to the new time-stamped directory +cp -a "$TEST_DIR" "$CURRENT_TIME" + +# Write the command-line arguments to a file in the new directory +echo "$@" > "$CURRENT_TIME/results_plain.md" + +# Run pass_fail_totals.sh and append the output to results_plain.md +./scripts/pass_fail_totals.sh "$TEST_DIR" >> "$CURRENT_TIME/results_plain.md" + +# Process and save the test results in PASS_FAIL.md +{ + ./scripts/pass_fail_totals.sh "$TEST_DIR" > "$CURRENT_TIME/TEST_LINKS.md" + echo "| STATUS | TEST NAME | TEST CONDITION | ACTUAL RESULT | EXPECTED RESULT |" + echo "|--------|-----------|----------------|---------------|-----------------|" + cat /tmp/SHARED.UNITS | awk -F'\\(|\\) \\| \\(' '{ print $2 " " $0 }' | sort -k2,2 | cut -d' ' -f2- | awk '!seen[$0]++' +} > "$CURRENT_TIME/PASS_FAIL.md" + +# Append the output of total_loonits.sh to results_plain.md +rm -f /tmp/SHARED.UNITS +./scripts/total_loonits.sh >> "$CURRENT_TIME/results_plain.md" + + +