TODO

Features to port from AIR to Java:
+ color scheme for matrix
+ clusterings overview (density, mean size, # unique vert)
+ dataModel to dispatch change events to listeners (containers)
+ row reordering
+ 2 clusterings comparison table
+ slider to cut off J.score in module-module table
+ clusterings comparison by metrics
+ vertex table
- filter by the # of co-occurrences
+ ladder component
+ color ladder cells based on score
+ add/remove clustering from the view
- small zoomable window on the matrix for navigation (lens w/ labels)
- network viz for the co-occured nodes
- labels on the matrix
+ color legend for matrix
- save session/load old session
+ matrix -> output for cytoscape (# cooccurences - weig, ts)
+ bar chart w/ overview
+ labels on the bar chart (overview panel)
+ QUIT command not ending the process
+ clicking on black area on the matrix - deselect the vertex pair
+ style JaccardScore slider
+ dockable windows for each panel
- data filtering panel - global filtering options on the whole dataset
- small multiples view for the slider above module table (row count 4 that table)
- filtering on table (search string)
+ ladder doesn't show when you load it in some particular way
- selecting regions on the matrix to reorder it manually
+ legend: forсe an update (waits for the 2nd coming of Christ)
- matrix dragging
+ compute matrix reordering first; show matrix; then compute clustering comparison