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predict.py
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from __future__ import print_function
import tensorflow as tf
import numpy as np
import time
import TensorflowUtils as utils
import scipy.misc as misc
FLAGS = tf.flags.FLAGS
tf.flags.DEFINE_string("logs_dir", "logs/", "path to logs directory")
tf.flags.DEFINE_string("model_dir", "model/", "Path to vgg model mat")
MODEL_URL = 'imagenet-vgg-verydeep-19.mat'
MAX_ITERATION = int(1e5 + 1)
NUM_OF_CLASSESS = 2
IMAGE_SIZE = 256
IMAGE_PATH = 'data_maur/images/000313.png'
def _transform(filename):
image = misc.imread(filename)
if len(image.shape) < 3:
image = np.array([image for i in range(3)])
resize_image = misc.imresize(image, [IMAGE_SIZE, IMAGE_SIZE], interp='nearest')
return np.array(resize_image)
def vgg_net(weights, image):
layers = (
'conv1_1', 'relu1_1', 'conv1_2', 'relu1_2', 'pool1',
'conv2_1', 'relu2_1', 'conv2_2', 'relu2_2', 'pool2',
'conv3_1', 'relu3_1', 'conv3_2', 'relu3_2', 'conv3_3',
'relu3_3', 'conv3_4', 'relu3_4', 'pool3',
'conv4_1', 'relu4_1', 'conv4_2', 'relu4_2', 'conv4_3',
'relu4_3', 'conv4_4', 'relu4_4', 'pool4',
'conv5_1', 'relu5_1', 'conv5_2', 'relu5_2', 'conv5_3',
'relu5_3', 'conv5_4', 'relu5_4'
)
net = {}
current = image
for i, name in enumerate(layers):
kind = name[:4]
if kind == 'conv':
kernels, bias = weights[i][0][0][0][0]
kernels = utils.get_variable(np.transpose(kernels, (1, 0, 2, 3)), name=name + "_w")
bias = utils.get_variable(bias.reshape(-1), name=name + "_b")
current = utils.conv2d_basic(current, kernels, bias)
elif kind == 'relu':
current = tf.nn.relu(current, name=name)
elif kind == 'pool':
current = utils.avg_pool_2x2(current)
net[name] = current
return net
def inference(image, keep_prob):
print("setting up vgg initialized conv layers ...")
model_data = utils.get_model_data(FLAGS.model_dir, MODEL_URL)
mean = model_data['normalization'][0][0][0]
mean_pixel = np.mean(mean, axis=(0, 1))
weights = np.squeeze(model_data['layers'])
processed_image = utils.process_image(image, mean_pixel)
with tf.variable_scope("inference"):
image_net = vgg_net(weights, processed_image)
conv_final_layer = image_net["conv5_3"]
pool5 = utils.max_pool_2x2(conv_final_layer)
W6 = utils.weight_variable([7, 7, 512, 4096], name="W6")
b6 = utils.bias_variable([4096], name="b6")
conv6 = utils.conv2d_basic(pool5, W6, b6)
relu6 = tf.nn.relu(conv6, name="relu6")
relu_dropout6 = tf.nn.dropout(relu6, keep_prob=keep_prob)
W7 = utils.weight_variable([1, 1, 4096, 4096], name="W7")
b7 = utils.bias_variable([4096], name="b7")
conv7 = utils.conv2d_basic(relu_dropout6, W7, b7)
relu7 = tf.nn.relu(conv7, name="relu7")
relu_dropout7 = tf.nn.dropout(relu7, keep_prob=keep_prob)
W8 = utils.weight_variable([1, 1, 4096, NUM_OF_CLASSESS], name="W8")
b8 = utils.bias_variable([NUM_OF_CLASSESS], name="b8")
conv8 = utils.conv2d_basic(relu_dropout7, W8, b8)
deconv_shape1 = image_net["pool4"].get_shape()
W_t1 = utils.weight_variable([4, 4, deconv_shape1[3].value, NUM_OF_CLASSESS], name="W_t1")
b_t1 = utils.bias_variable([deconv_shape1[3].value], name="b_t1")
conv_t1 = utils.conv2d_transpose_strided(conv8, W_t1, b_t1, output_shape=tf.shape(image_net["pool4"]))
fuse_1 = tf.add(conv_t1, image_net["pool4"], name="fuse_1")
deconv_shape2 = image_net["pool3"].get_shape()
W_t2 = utils.weight_variable([4, 4, deconv_shape2[3].value, deconv_shape1[3].value], name="W_t2")
b_t2 = utils.bias_variable([deconv_shape2[3].value], name="b_t2")
conv_t2 = utils.conv2d_transpose_strided(fuse_1, W_t2, b_t2, output_shape=tf.shape(image_net["pool3"]))
fuse_2 = tf.add(conv_t2, image_net["pool3"], name="fuse_2")
shape = tf.shape(image)
deconv_shape3 = tf.stack([shape[0], shape[1], shape[2], NUM_OF_CLASSESS])
W_t3 = utils.weight_variable([16, 16, NUM_OF_CLASSESS, deconv_shape2[3].value], name="W_t3")
b_t3 = utils.bias_variable([NUM_OF_CLASSESS], name="b_t3")
conv_t3 = utils.conv2d_transpose_strided(fuse_2, W_t3, b_t3, output_shape=deconv_shape3, stride=8)
annotation_pred = tf.argmax(conv_t3, dimension=3, name="prediction")
return tf.expand_dims(annotation_pred, dim=3), conv_t3
def main(argv=None):
keep_probability = tf.placeholder(tf.float32, name="keep_probabilty")
image = tf.placeholder(tf.float32, shape=[None, IMAGE_SIZE, IMAGE_SIZE, 3], name="input_image")
pred_annotation, logits = inference(image, keep_probability)
sess = tf.Session()
saver = tf.train.Saver()
sess.run(tf.global_variables_initializer())
ckpt = tf.train.get_checkpoint_state(FLAGS.logs_dir)
if ckpt and ckpt.model_checkpoint_path:
saver.restore(sess, ckpt.model_checkpoint_path)
print("Model restored...", ckpt.model_checkpoint_path)
valid_image = _transform(IMAGE_PATH)
valid_image = np.expand_dims(valid_image, 0)
start_time = time.time()
pred = sess.run(pred_annotation, feed_dict={image: valid_image, keep_probability: 1.0})
elapsed_time = time.time() - start_time
print('TIME: ', elapsed_time)
pred = np.squeeze(pred, axis=3)
itr = 0
mask_bool = pred[itr] == 1
mask_pred = np.zeros(shape=(IMAGE_SIZE, IMAGE_SIZE))
mask_pred[mask_bool] = 255
pred_3c = np.zeros(shape=(IMAGE_SIZE,IMAGE_SIZE,3))
pred_3c[:,:,0] = mask_pred
utils.save_image(valid_image[itr].astype(np.uint8), FLAGS.logs_dir, name="{}-image".format(IMAGE_PATH[-10:-4]))
utils.save_image(pred_3c.astype(np.uint8), FLAGS.logs_dir, name="{}-pred".format(IMAGE_PATH[-10:-4]))
print("Saved image")
if __name__ == "__main__":
tf.app.run()