From 15b375467774a17e6e5392e4974ba5a3960373f6 Mon Sep 17 00:00:00 2001 From: Matt Shirley Date: Tue, 17 May 2022 14:53:54 -0400 Subject: [PATCH] Add acidbio/bed tests --- .github/workflows/main.yml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 69584af..5fcb461 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -46,5 +46,13 @@ jobs: - name: Run tests run: pytest --cov=./ --cov-report=xml + - name: Run acidbio BED tests + run: | + git clone https://github.com/mdshw5/acidbio.git + cd acidbio/bed + python3 -m pip install -r requirements.txt + cp config_template.yaml config.yaml + python3 bedrunall.py --tool pyfaidx BED03 ./ + - name: Codecov uses: codecov/codecov-action@v2.1.0