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+version = "0.0.0" +description = "" +authors = ["Edgar Ramírez Mondragón "] +license = "Apache-2.0" +packages = [{include = "tap_duckdb"}] + +[tool.poetry.dependencies] +python = ">=3.9,<3.12" +duckdb-engine = "^0.9.2" +singer-sdk = {path = "../..", develop = true} + +[tool.poetry.group.dev.dependencies] +singer-sdk = {path = "../..", develop = true, extras = ["testing"]} +ipython = "^8.14.0" + +[tool.poetry.scripts] +sample-tap-duckdb = "tap_duckdb.tap:TapDuckDB.cli" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/samples/sample_tap_duckdb/tap_duckdb/__init__.py b/samples/sample_tap_duckdb/tap_duckdb/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/samples/sample_tap_duckdb/tap_duckdb/tap.py b/samples/sample_tap_duckdb/tap_duckdb/tap.py new file mode 100644 index 000000000..5692dc3a1 --- /dev/null +++ b/samples/sample_tap_duckdb/tap_duckdb/tap.py @@ -0,0 +1,111 @@ +from __future__ import annotations + +import typing as t +import uuid +from textwrap import dedent + +import sqlalchemy as sa + +from singer_sdk import SQLConnector, SQLTap +from singer_sdk import typing as th +from singer_sdk.exceptions import ( + UnsupportedBatchCompressionError, + UnsupportedBatchFormatError, +) +from singer_sdk.helpers._batch import BatchFileFormat, CSVEncoding, JSONLinesEncoding +from singer_sdk.streams import SQLStream + +if t.TYPE_CHECKING: + from singer_sdk.helpers._batch import BatchConfig + + +class DuckDBConnector(SQLConnector): + def get_sqlalchemy_url(self, config) -> str: + """Return a SQLAlchemy URL.""" + return f"duckdb:///{config['database']}" + + +class DuckDBStream(SQLStream): + connector_class = DuckDBConnector + + def get_jsonl_copy_options(self, encoding: JSONLinesEncoding, filename: str): + options = ["FORMAT JSON"] + if encoding.compression is None or encoding.compression == "none": + filename = f"{filename}.jsonl" + elif encoding.compression == "gzip": + options.append("COMPRESSION GZIP") + filename = f"{filename}.jsonl.gz" + else: + raise UnsupportedBatchCompressionError(encoding.compression) + + return options, filename + + def get_csv_copy_options(self, encoding: CSVEncoding, filename: str): + options = ["FORMAT CSV", f"DELIMITER '{encoding.delimiter}'"] + if encoding.header: + options.append("HEADER") + + if encoding.compression is None or encoding.compression == "none": + filename = f"{filename}.csv" + elif encoding.compression == "gzip": + options.append("COMPRESSION GZIP") + filename = f"{filename}.csv.gz" + else: + raise UnsupportedBatchCompressionError(encoding.compression) + + return options, filename + + def get_batches(self, batch_config: BatchConfig, context=None): # noqa: ARG002 + prefix = batch_config.storage.prefix or "" + sync_id = f"{self.tap_name}--{self.name}-{uuid.uuid4()}" + filename = f"{prefix}{sync_id}" + file_format = batch_config.encoding.format + + if file_format == BatchFileFormat.JSONL: + options, filename = self.get_jsonl_copy_options( + batch_config.encoding, + filename, + ) + elif file_format == BatchFileFormat.CSV: + options, filename = self.get_csv_copy_options( + batch_config.encoding, + filename, + ) + else: + raise UnsupportedBatchFormatError(file_format) + + table_name = self.fully_qualified_name + filepath = f"{batch_config.storage.root}/{filename}" + copy_options = ",".join(options) + query = sa.text( + dedent( + f"COPY (SELECT * FROM {table_name}) TO '{filepath}' " # noqa: S608 + f"({copy_options})", + ), + ) + query = query.execution_options(autocommit=True) + + with self.connector._connect() as conn: + conn.execute(query) + + files = [filepath] + yield (batch_config.encoding, files) + + +class TapDuckDB(SQLTap): + name = "tap-duckdb" + default_stream_class = DuckDBStream + + config_jsonschema = th.PropertiesList( + th.Property( + "database", + th.StringType, + required=True, + description="Path to the DuckDB database file.", + default="data.duckdb", + ), + ).to_dict() + + +if __name__ == "__main__": + TapDuckDB.cli() diff --git a/singer_sdk/batch.py b/singer_sdk/batch.py index 0cbf11917..3f5228b5d 100644 --- a/singer_sdk/batch.py +++ b/singer_sdk/batch.py @@ -1,15 +1,22 @@ """Batching utilities for Singer SDK.""" from __future__ import annotations +import csv import gzip +import io import itertools import json import typing as t from abc import ABC, abstractmethod from uuid import uuid4 +from singer_sdk.exceptions import UnsupportedBatchCompressionError +from singer_sdk.helpers._batch import BatchFileCompression + if t.TYPE_CHECKING: - from singer_sdk.helpers._batch import BatchConfig + from fs.base import FS + + from singer_sdk.helpers._batch import BatchConfig, CSVEncoding _T = t.TypeVar("_T") @@ -109,3 +116,102 @@ def get_batches( ) file_url = fs.geturl(filename) yield [file_url] + + +class CSVBatcher(BaseBatcher): + """JSON array Record Batcher.""" + + def __init__( + self, + tap_name: str, + stream_name: str, + batch_config: BatchConfig[CSVEncoding], + ) -> None: + """Initialize the batcher. + + Args: + tap_name: The name of the tap. + stream_name: The name of the stream. + batch_config: The batch configuration. + """ + super().__init__(tap_name, stream_name, batch_config) + self.encoding = self.batch_config.encoding + + def get_batches( + self, + records: t.Iterator[dict], + ) -> t.Iterator[list[str]]: + """Yield manifest of batches. + + Args: + records: The records to batch. + + Yields: + A list of file paths (called a manifest). + + Raises: + UnsupportedBatchCompressionError: If the compression is not supported. + """ + sync_id = f"{self.tap_name}--{self.stream_name}-{uuid4()}" + prefix = self.batch_config.storage.prefix or "" + + for i, chunk in enumerate( + lazy_chunked_generator( + records, + self.batch_config.batch_size, + ), + start=1, + ): + with self.batch_config.storage.fs(create=True) as fs: + if self.encoding.compression == BatchFileCompression.GZIP: + filename = f"{prefix}{sync_id}-{i}.csv.gz" + self._write_gzip(fs, filename, chunk) + elif self.encoding.compression == BatchFileCompression.NONE: + filename = f"{prefix}{sync_id}-{i}.csv" + self._write_plain(fs, filename, chunk) + else: + raise UnsupportedBatchCompressionError( + self.encoding.compression or "none", + ) + file_url = fs.geturl(filename) + yield [file_url] + + def _write_gzip(self, fs: FS, filename: str, records: t.Iterator[dict]) -> None: + first_record = next(records, None) + + if first_record is None: + return + + with fs.open(filename, "wb") as f, gzip.GzipFile( + fileobj=f, + mode="wb", + ) as gz: + string_buffer = io.StringIO() + writer = csv.DictWriter( + string_buffer, + fieldnames=first_record.keys(), + delimiter=self.encoding.delimiter, + ) + if self.encoding.header: + writer.writeheader() + writer.writerow(first_record) + writer.writerows(records) + gz.write(string_buffer.getvalue().encode()) + + def _write_plain(self, fs: FS, filename: str, records: t.Iterator[dict]) -> None: + first_record = next(records, None) + + if first_record is None: + return + + with fs.open(filename, "w") as f: + writer = csv.DictWriter( + f, + fieldnames=first_record.keys(), + delimiter=self.encoding.delimiter, + ) + if self.encoding.header: + writer.writeheader() + writer.writeheader() + writer.writerow(first_record) + writer.writerows(records) diff --git a/singer_sdk/connectors/sql.py b/singer_sdk/connectors/sql.py index c6f957589..a2b4e4dc6 100644 --- a/singer_sdk/connectors/sql.py +++ b/singer_sdk/connectors/sql.py @@ -509,7 +509,12 @@ def discover_catalog_entries(self) -> list[dict]: result: list[dict] = [] engine = self._engine inspected = sqlalchemy.inspect(engine) + processed_schemas = {} for schema_name in self.get_schema_names(engine, inspected): + # Skip schemas that have already been seen + if schema_name in processed_schemas: + continue + # Iterate through each table and view for table_name, is_view in self.get_object_names( engine, @@ -525,6 +530,8 @@ def discover_catalog_entries(self) -> list[dict]: ) result.append(catalog_entry.to_dict()) + processed_schemas[schema_name] = True + return result def parse_full_table_name( diff --git a/singer_sdk/exceptions.py b/singer_sdk/exceptions.py index 351776291..0084bf0ae 100644 --- a/singer_sdk/exceptions.py +++ b/singer_sdk/exceptions.py @@ -123,3 +123,27 @@ class ConformedNameClashException(Exception): class MissingKeyPropertiesError(Exception): """Raised when a recieved (and/or transformed) record is missing key properties.""" + + +class UnsupportedBatchFormatError(Exception): + """Raised when an unsupported batch format is requested.""" + + def __init__(self, batch_format: str) -> None: + """Initialize the exception. + + Args: + batch_format: The unsupported batch format. + """ + super().__init__(f"Unsupported batch format: {batch_format}") + + +class UnsupportedBatchCompressionError(Exception): + """Raised when an unsupported batch compression is requested.""" + + def __init__(self, compression: str) -> None: + """Initialize the exception. + + Args: + compression: The unsupported batch compression. + """ + super().__init__(f"Unsupported batch format: {compression}") diff --git a/singer_sdk/helpers/_batch.py b/singer_sdk/helpers/_batch.py index 62447ddb3..3329539db 100644 --- a/singer_sdk/helpers/_batch.py +++ b/singer_sdk/helpers/_batch.py @@ -6,7 +6,7 @@ import platform import typing as t from contextlib import contextmanager -from dataclasses import asdict, dataclass, field +from dataclasses import asdict, dataclass, field, fields from urllib.parse import ParseResult, urlencode, urlparse import fs @@ -25,6 +25,19 @@ class BatchFileFormat(str, enum.Enum): JSONL = "jsonl" """JSON Lines format.""" + CSV = "csv" + """CSV format.""" + + +class BatchFileCompression(str, enum.Enum): + """Batch file compression.""" + + NONE = "none" + """No compression.""" + + GZIP = "gzip" + """GZIP compression.""" + @dataclass class BaseBatchFileEncoding: @@ -59,7 +72,11 @@ def from_dict(cls, data: dict[str, t.Any]) -> BaseBatchFileEncoding: data = data.copy() encoding_format = data.pop("format") encoding_cls = cls.registered_encodings[encoding_format] - return encoding_cls(**data) + return encoding_cls( + **{ + f.name: data[f.name] for f in fields(encoding_cls) if f.name != "format" + }, + ) @dataclass @@ -69,6 +86,19 @@ class JSONLinesEncoding(BaseBatchFileEncoding): __encoding_format__ = "jsonl" +@dataclass +class CSVEncoding(BaseBatchFileEncoding): + """JSON Lines encoding for batch files.""" + + __encoding_format__ = "csv" + + delimiter: str = "," + """The delimiter of the CSV file.""" + + header: bool = True + """Whether the CSV file has a header row.""" + + @dataclass class SDKBatchMessage(Message): """Singer batch message in the Meltano Singer SDK flavor.""" @@ -201,11 +231,14 @@ def open( # noqa: A003 filesystem.close() +T = t.TypeVar("T", bound=BaseBatchFileEncoding) + + @dataclass -class BatchConfig: +class BatchConfig(t.Generic[T]): """Batch configuration.""" - encoding: BaseBatchFileEncoding + encoding: T """The encoding of the batch file.""" storage: StorageTarget diff --git a/singer_sdk/helpers/_typing.py b/singer_sdk/helpers/_typing.py index 6eb7b3879..1b8aa7d58 100644 --- a/singer_sdk/helpers/_typing.py +++ b/singer_sdk/helpers/_typing.py @@ -59,6 +59,13 @@ def append_type(type_dict: dict, new_type: str) -> dict: result["anyOf"] = [result["anyOf"], new_type] return result + if "oneOf" in result: + if isinstance(result["oneOf"], list) and new_type not in result["oneOf"]: + result["oneOf"].append({"type": new_type}) + elif new_type != result["oneOf"]: + result["oneOf"] = [result["oneOf"], {"type": new_type}] + return result + if "type" in result: type_array = ( result["type"] if isinstance(result["type"], list) else [result["type"]] diff --git a/singer_sdk/helpers/capabilities.py b/singer_sdk/helpers/capabilities.py index 690f04db5..ae07d42d6 100644 --- a/singer_sdk/helpers/capabilities.py +++ b/singer_sdk/helpers/capabilities.py @@ -8,6 +8,7 @@ from singer_sdk.typing import ( BooleanType, + DiscriminatedUnion, IntegerType, ObjectType, PropertiesList, @@ -58,18 +59,37 @@ Property( "encoding", description="Specifies the format and compression of the batch files.", - wrapped=ObjectType( - Property( - "format", - StringType, - allowed_values=["jsonl"], - description="Format to use for batch files.", + wrapped=DiscriminatedUnion( + "format", + jsonl=ObjectType( + Property( + "compression", + StringType, + allowed_values=["gzip", "none"], + description="Compression format to use for batch files.", + ), ), - Property( - "compression", - StringType, - allowed_values=["gzip", "none"], - description="Compression format to use for batch files.", + csv=ObjectType( + Property( + "compression", + StringType, + allowed_values=["gzip", "none"], + description="Compression format to use for batch files.", + ), + Property( + "delimiter", + StringType, + description="Delimiter to use for batch files.", + default=",", + ), + Property( + "header", + BooleanType, + description=( + "Whether to include a header row in batch files." + ), + default=True, + ), ), ), ), diff --git a/singer_sdk/streams/core.py b/singer_sdk/streams/core.py index 4c3adb225..4533be39c 100644 --- a/singer_sdk/streams/core.py +++ b/singer_sdk/streams/core.py @@ -22,10 +22,14 @@ InvalidReplicationKeyException, InvalidStreamSortException, MaxRecordsLimitException, + UnsupportedBatchCompressionError, + UnsupportedBatchFormatError, ) from singer_sdk.helpers._batch import ( BaseBatchFileEncoding, BatchConfig, + BatchFileCompression, + BatchFileFormat, SDKBatchMessage, ) from singer_sdk.helpers._catalog import pop_deselected_record_properties @@ -1348,7 +1352,19 @@ def get_batches( Yields: A tuple of (encoding, manifest) for each batch. + + Raises: + UnsupportedBatchCompressionError: Raised if the batch compression is not + supported by the stream. + UnsupportedBatchFormatError: Raised if the batch format is not supported + by the stream. """ + if batch_config.encoding.format != BatchFileFormat.JSONL: + raise UnsupportedBatchFormatError(batch_config.encoding.format) + + if batch_config.encoding.compression != BatchFileCompression.GZIP: + raise UnsupportedBatchCompressionError(batch_config.encoding.compression) + batcher = JSONLinesBatcher( tap_name=self.tap_name, stream_name=self.name, diff --git a/singer_sdk/target_base.py b/singer_sdk/target_base.py index aabd8a640..c9d5d62ef 100644 --- a/singer_sdk/target_base.py +++ b/singer_sdk/target_base.py @@ -370,7 +370,7 @@ def _process_schema_message(self, message_dict: dict) -> None: stream_name = message_dict["stream"] schema = message_dict["schema"] - key_properties = message_dict.get("key_properties", None) + key_properties = message_dict.get("key_properties") do_registration = False if stream_name not in self.mapper.stream_maps: do_registration = True diff --git a/tests/core/test_batch.py b/tests/core/test_batch.py index 6efb3b34a..900fd51b0 100644 --- a/tests/core/test_batch.py +++ b/tests/core/test_batch.py @@ -6,13 +6,58 @@ import pytest -from singer_sdk.batch import JSONLinesBatcher +from singer_sdk.batch import CSVBatcher, JSONLinesBatcher +from singer_sdk.exceptions import ( + UnsupportedBatchCompressionError, + UnsupportedBatchFormatError, +) from singer_sdk.helpers._batch import ( BaseBatchFileEncoding, BatchConfig, + BatchFileFormat, + CSVEncoding, JSONLinesEncoding, StorageTarget, ) +from singer_sdk.streams.core import Stream +from singer_sdk.tap_base import Tap + + +class DefaultBatchesStream(Stream): + name = "default_batches" + schema = { # noqa: RUF012 + "properties": { + "id": {"type": "integer"}, + "name": {"type": "string"}, + "amount": {"type": "number"}, + }, + } + + def get_records(self, _): + yield {"id": 1, "name": "foo", "amount": decimal.Decimal("1.23")} + yield {"id": 2, "name": "bar", "amount": decimal.Decimal("4.56")} + yield {"id": 3, "name": "baz", "amount": decimal.Decimal("7.89")} + + +class CustomBatchesStream(DefaultBatchesStream): + name = "custom_batches" + + def get_batches(self, batch_config, context=None): + if batch_config.encoding.format == BatchFileFormat.CSV: + csv_batcher = CSVBatcher(self.tap_name, self.name, batch_config) + records = self._sync_records(context, write_messages=False) + for manifest in csv_batcher.get_batches(records=records): + yield batch_config.encoding, manifest + else: + yield from super().get_batches(batch_config, context) + + +class BatchedTap(Tap): + name = "tap-batched" + config_jsonschema = {"properties": {}} # noqa: RUF012 + + def discover_streams(self): + return [DefaultBatchesStream(self), CustomBatchesStream(self)] @pytest.mark.parametrize( @@ -125,3 +170,46 @@ def test_json_lines_batcher(): for batch in batches for filepath in batch ) + + +@pytest.mark.parametrize( + "compression", + [ + pytest.param("gzip", id="gzip"), + pytest.param("none", id="none"), + ], +) +def test_csv_batches(compression: str): + batch_config = BatchConfig( + encoding=CSVEncoding(compression=compression), + storage=StorageTarget("file:///tmp/sdk-batches"), + batch_size=2, + ) + tap = BatchedTap() + streams = tap.streams + batches = list(streams["custom_batches"].get_batches(batch_config=batch_config)) + assert len(batches) == 2 + + +def test_csv_batches_unsupported_format(): + batch_config = BatchConfig( + encoding=CSVEncoding(compression="unknown"), + storage=StorageTarget("file:///tmp/sdk-batches"), + batch_size=2, + ) + tap = BatchedTap() + streams = tap.streams + with pytest.raises(UnsupportedBatchCompressionError): + list(streams["custom_batches"].get_batches(batch_config=batch_config)) + + +def test_jsonl_batches_unsupported_format(): + batch_config = BatchConfig( + encoding=CSVEncoding(compression="none"), + storage=StorageTarget("file:///tmp/sdk-batches"), + batch_size=2, + ) + tap = BatchedTap() + streams = tap.streams + with pytest.raises(UnsupportedBatchFormatError): + list(streams["default_batches"].get_batches(batch_config=batch_config))