.travis.yml

sudo: required
dist: trusty
language: python
python:
    - "3.6"
    - "2.7"
notifications:
  email:
    recipients:
    - lorena.pantano@gmail.com
    on_failure: always
before_install:
- echo $TRAVIS_PYTHON_VERSION
- miniconda="Miniconda3-latest-Linux-x86_64.sh"
- if [[ $TRAVIS_PYTHON_VERSION == "2.7" ]] ; then miniconda="Miniconda2-latest-Linux-x86_64.sh"; fi
- wget -O miniconda.sh http://repo.continuum.io/miniconda/${miniconda}
- bash miniconda.sh -b -p ~/install
install:
- export PATH=~/install/bin/:$PATH
- conda install --yes ncurses -c conda-forge
- conda install --yes -c conda-forge -c bioconda bedtools samtools razers3 pip nose pysam pandas pyyaml pybedtools  biopython setuptools codecov -q
script:
- python setup.py develop
- nosetests --with-coverage
after_success:
  - codecov
deploy:
  provider: pypi
  user: lpantano
  password:
    secure: 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
  skip_existing: true
  on:
    all_branches: true
    condition: $TRAVIS_BRANCH =~ ^master|dev$
    distributions: sdist bdist_wheel
    repo: miRTop/mirtop