mirochaj
diff --git a/‎.hgignore
100644100755 b/‎.hgignore
100644100755
diff --git a/‎CITATION
100644100755 b/‎CITATION
100644100755
diff --git a/‎LICENSE
100644100755 b/‎LICENSE
100644100755
diff --git a/‎README
100644100755 b/‎README
100644100755
diff --git a/‎ares/__init__.py
100644100755 b/‎ares/__init__.py
100644100755
diff --git a/‎ares/analysis/BlobFactory.py
100644100755 b/‎ares/analysis/BlobFactory.py
100644100755
diff --git a/‎ares/analysis/DerivedQuantities.py
100644100755 b/‎ares/analysis/DerivedQuantities.py
100644100755
diff --git a/‎ares/analysis/Global21cm.py
100644100755 b/‎ares/analysis/Global21cm.py
100644100755
diff --git a/‎ares/analysis/InlineAnalysis.py
100644100755 b/‎ares/analysis/InlineAnalysis.py
100644100755
diff --git a/‎ares/analysis/MetaGalacticBackground.py
100644100755 b/‎ares/analysis/MetaGalacticBackground.py
100644100755
diff --git a/‎ares/analysis/ModelSelection.py
100644100755 b/‎ares/analysis/ModelSelection.py
100644100755
diff --git a/‎ares/analysis/ModelSet.py
100644100755 b/‎ares/analysis/ModelSet.py
100644100755
diff --git a/‎ares/analysis/ModelSet21cm.py
100644100755 b/‎ares/analysis/ModelSet21cm.py
100644100755
diff --git a/‎ares/analysis/ModelSetLF.py
100644100755 b/‎ares/analysis/ModelSetLF.py
100644100755
diff --git a/‎ares/analysis/MultiPhaseMedium.py
100644100755 b/‎ares/analysis/MultiPhaseMedium.py
100644100755
diff --git a/‎ares/analysis/MultiPlot.py
100644100755 b/‎ares/analysis/MultiPlot.py
100644100755
diff --git a/‎ares/analysis/ObservedLF.py
100644100755 b/‎ares/analysis/ObservedLF.py
100644100755
diff --git a/‎ares/analysis/Population.py
100644100755 b/‎ares/analysis/Population.py
100644100755
diff --git a/‎ares/analysis/RaySegment.py
100644100755 b/‎ares/analysis/RaySegment.py
100644100755
diff --git a/‎ares/analysis/Source.py
100644100755 b/‎ares/analysis/Source.py
100644100755
diff --git a/‎ares/analysis/TurningPoints.py
100644100755 b/‎ares/analysis/TurningPoints.py
100644100755
diff --git a/‎ares/analysis/__init__.py
100644100755 b/‎ares/analysis/__init__.py
100644100755
diff --git a/‎ares/inference/AbundanceMatching.py
100644100755 b/‎ares/inference/AbundanceMatching.py
100644100755
diff --git a/‎ares/inference/FitGlobal21cm.py
100644100755 b/‎ares/inference/FitGlobal21cm.py
100644100755
diff --git a/‎ares/inference/FitLuminosityFunction.py
100644100755 b/‎ares/inference/FitLuminosityFunction.py
100644100755
diff --git a/‎ares/inference/ModelFit.py
100644100755
+13-2 b/‎ares/inference/ModelFit.py
100644100755
+13-2
diff --git a/‎ares/inference/ModelGrid.py
100644100755 b/‎ares/inference/ModelGrid.py
100644100755
diff --git a/‎ares/inference/ModelSample.py
100644100755 b/‎ares/inference/ModelSample.py
100644100755
diff --git a/‎ares/inference/OptimizeSpectrum.py
100644100755 b/‎ares/inference/OptimizeSpectrum.py
100644100755
diff --git a/‎ares/inference/PriorSet.py
100644100755 b/‎ares/inference/PriorSet.py
100644100755
diff --git a/‎ares/inference/Priors.py
100644100755 b/‎ares/inference/Priors.py
100644100755
diff --git a/‎ares/inference/__init__.py
100644100755 b/‎ares/inference/__init__.py
100644100755
diff --git a/‎ares/phenom/DustCorrection.py
100644100755 b/‎ares/phenom/DustCorrection.py
100644100755
diff --git a/‎ares/phenom/Gaussian21cm.py
100644100755 b/‎ares/phenom/Gaussian21cm.py
100644100755
diff --git a/‎ares/phenom/HaloProperty.py
100644100755 b/‎ares/phenom/HaloProperty.py
100644100755
diff --git a/‎ares/phenom/Tanh21cm.py
100644100755 b/‎ares/phenom/Tanh21cm.py
100644100755
diff --git a/‎ares/phenom/__init__.py
100644100755 b/‎ares/phenom/__init__.py
100644100755
diff --git a/‎ares/physics/Constants.py
100644100755 b/‎ares/physics/Constants.py
100644100755
diff --git a/‎ares/physics/Cosmology.py
100644100755 b/‎ares/physics/Cosmology.py
100644100755
diff --git a/‎ares/physics/CrossSections.py
100644100755 b/‎ares/physics/CrossSections.py
100644100755
diff --git a/‎ares/physics/HaloMassFunction.py
100644100755 b/‎ares/physics/HaloMassFunction.py
100644100755
diff --git a/‎ares/physics/Hydrogen.py
100644100755 b/‎ares/physics/Hydrogen.py
100644100755
diff --git a/‎ares/physics/RateCoefficients.py
100644100755 b/‎ares/physics/RateCoefficients.py
100644100755
diff --git a/‎ares/physics/SecondaryElectrons.py
100644100755 b/‎ares/physics/SecondaryElectrons.py
100644100755
diff --git a/‎ares/physics/__init__.py
100644100755 b/‎ares/physics/__init__.py
100644100755
diff --git a/‎ares/populations/Composite.py
100644100755 b/‎ares/populations/Composite.py
100644100755
diff --git a/‎ares/populations/GalaxyAggregate.py
100644100755 b/‎ares/populations/GalaxyAggregate.py
100644100755
diff --git a/‎ares/populations/GalaxyCohort.py
100644100755 b/‎ares/populations/GalaxyCohort.py
100644100755
diff --git a/‎ares/populations/GalaxyEnsemble.py
100644100755 b/‎ares/populations/GalaxyEnsemble.py
100644100755
diff --git a/‎ares/populations/GalaxyPopulation.py
100644100755 b/‎ares/populations/GalaxyPopulation.py
100644100755
diff --git a/‎ares/populations/Halo.py
100644100755 b/‎ares/populations/Halo.py
100644100755
diff --git a/‎ares/populations/Parameterized.py
100644100755 b/‎ares/populations/Parameterized.py
100644100755
diff --git a/‎ares/populations/Population.py
100644100755 b/‎ares/populations/Population.py
100644100755
diff --git a/‎ares/populations/SynthesisModel.py
100644100755 b/‎ares/populations/SynthesisModel.py
100644100755
diff --git a/‎ares/populations/__init__.py
100644100755 b/‎ares/populations/__init__.py
100644100755
diff --git a/‎ares/simulations/Collapse.py
100644100755 b/‎ares/simulations/Collapse.py
100644100755
diff --git a/‎ares/simulations/GasParcel.py
100644100755 b/‎ares/simulations/GasParcel.py
100644100755
diff --git a/‎ares/simulations/Global21cm.py
100644100755 b/‎ares/simulations/Global21cm.py
100644100755
diff --git a/‎ares/simulations/MetaGalacticBackground.py
100644100755 b/‎ares/simulations/MetaGalacticBackground.py
100644100755
diff --git a/‎ares/simulations/MultiPhaseMedium.py
100644100755 b/‎ares/simulations/MultiPhaseMedium.py
100644100755
diff --git a/‎ares/simulations/RaySegment.py
100644100755 b/‎ares/simulations/RaySegment.py
100644100755
diff --git a/‎ares/simulations/__init__.py
100644100755 b/‎ares/simulations/__init__.py
100644100755
diff --git a/‎ares/solvers/Chemistry.py
100644100755 b/‎ares/solvers/Chemistry.py
100644100755
diff --git a/‎ares/solvers/OpticalDepth.py
100644100755 b/‎ares/solvers/OpticalDepth.py
100644100755
diff --git a/‎ares/solvers/RadialField.py
100644100755 b/‎ares/solvers/RadialField.py
100644100755
diff --git a/‎ares/solvers/UniformBackground.py
100644100755 b/‎ares/solvers/UniformBackground.py
100644100755
diff --git a/‎ares/solvers/__init__.py
100644100755 b/‎ares/solvers/__init__.py
100644100755
diff --git a/‎ares/sources/BlackHole.py
100644100755 b/‎ares/sources/BlackHole.py
100644100755
diff --git a/‎ares/sources/Composite.py
100644100755 b/‎ares/sources/Composite.py
100644100755
diff --git a/‎ares/sources/Diffuse.py
100644100755 b/‎ares/sources/Diffuse.py
100644100755
diff --git a/‎ares/sources/Source.py
100644100755 b/‎ares/sources/Source.py
100644100755
diff --git a/‎ares/sources/Star.py
100644100755 b/‎ares/sources/Star.py
100644100755
diff --git a/‎ares/sources/Toy.py
100644100755 b/‎ares/sources/Toy.py
100644100755
diff --git a/‎ares/sources/__init__.py
100644100755 b/‎ares/sources/__init__.py
100644100755
diff --git a/‎ares/static/ChemicalNetwork.py
100644100755 b/‎ares/static/ChemicalNetwork.py
100644100755
diff --git a/‎ares/static/Grid.py
100644100755 b/‎ares/static/Grid.py
100644100755
diff --git a/‎ares/static/IntegralTables.py
100644100755 b/‎ares/static/IntegralTables.py
100644100755
diff --git a/‎ares/static/InterpolationTables.py
100644100755 b/‎ares/static/InterpolationTables.py
100644100755
diff --git a/‎ares/static/VolumeGlobal.py
100644100755 b/‎ares/static/VolumeGlobal.py
100644100755
diff --git a/‎ares/static/VolumeLocal.py
100644100755 b/‎ares/static/VolumeLocal.py
100644100755
diff --git a/‎ares/static/__init__.py
100644100755 b/‎ares/static/__init__.py
100644100755
diff --git a/‎ares/util/Aesthetics.py
100644100755 b/‎ares/util/Aesthetics.py
100644100755
diff --git a/‎ares/util/BackwardCompatibility.py
100644100755 b/‎ares/util/BackwardCompatibility.py
100644100755
diff --git a/‎ares/util/CheckForParameterConflicts.py
100644100755 b/‎ares/util/CheckForParameterConflicts.py
100644100755
diff --git a/‎ares/util/GridND.py
100644100755 b/‎ares/util/GridND.py
100644100755
diff --git a/‎ares/util/MPIPool.py
100644100755 b/‎ares/util/MPIPool.py
100644100755
diff --git a/‎ares/util/MagnitudeSystem.py
100644100755 b/‎ares/util/MagnitudeSystem.py
100644100755
diff --git a/‎ares/util/Math.py
100644100755 b/‎ares/util/Math.py
100644100755
diff --git a/‎ares/util/Misc.py
100644100755 b/‎ares/util/Misc.py
100644100755
diff --git a/‎ares/util/ParameterBundles.py
100644100755 b/‎ares/util/ParameterBundles.py
100644100755
diff --git a/‎ares/util/ParameterFile.py
100644100755 b/‎ares/util/ParameterFile.py
100644100755
diff --git a/‎ares/util/PrintInfo.py
100644100755 b/‎ares/util/PrintInfo.py
100644100755
diff --git a/‎ares/util/ProblemTypes.py
100644100755 b/‎ares/util/ProblemTypes.py
100644100755
diff --git a/‎ares/util/ProgressBar.py
100644100755 b/‎ares/util/ProgressBar.py
100644100755
diff --git a/‎ares/util/ReadData.py
100644100755 b/‎ares/util/ReadData.py
100644100755
diff --git a/‎ares/util/RestrictTimestep.py
100644100755 b/‎ares/util/RestrictTimestep.py
100644100755
diff --git a/‎ares/util/SetDefaultParameterValues.py
100644100755 b/‎ares/util/SetDefaultParameterValues.py
100644100755
diff --git a/‎ares/util/Stats.py
100644100755 b/‎ares/util/Stats.py
100644100755
diff --git a/‎ares/util/Warnings.py
100644100755 b/‎ares/util/Warnings.py
100644100755
diff --git a/‎ares/util/WriteData.py
100644100755 b/‎ares/util/WriteData.py
100644100755
diff --git a/‎ares/util/__init__.py
100644100755 b/‎ares/util/__init__.py
100644100755
diff --git a/‎doc/Makefile
100644100755 b/‎doc/Makefile
100644100755
diff --git a/‎doc/analysis.rst
100644100755 b/‎doc/analysis.rst
100644100755
diff --git a/‎doc/conf.py
100644100755 b/‎doc/conf.py
100644100755
diff --git a/‎doc/contributing.rst
100644100755 b/‎doc/contributing.rst
100644100755
diff --git a/‎doc/example_21cm_multipop.rst
100644100755 b/‎doc/example_21cm_multipop.rst
100644100755
diff --git a/‎doc/example_21cm_simple.rst
100644100755 b/‎doc/example_21cm_simple.rst
100644100755
diff --git a/‎doc/example_adv_RT_w_He.rst
100644100755 b/‎doc/example_adv_RT_w_He.rst
100644100755
diff --git a/‎doc/example_bh.rst
100644100755 b/‎doc/example_bh.rst
100644100755
diff --git a/‎doc/example_crb_br.rst
100644100755 b/‎doc/example_crb_br.rst
100644100755
diff --git a/‎doc/example_crb_ion.rst
100644100755 b/‎doc/example_crb_ion.rst
100644100755
diff --git a/‎doc/example_crb_uv.rst
100644100755 b/‎doc/example_crb_uv.rst
100644100755
diff --git a/‎doc/example_crb_xr.rst
100644100755 b/‎doc/example_crb_xr.rst
100644100755
diff --git a/‎doc/example_customization.rst
100644100755 b/‎doc/example_customization.rst
100644100755
diff --git a/‎doc/example_galaxypop.rst
100644100755 b/‎doc/example_galaxypop.rst
100644100755
diff --git a/‎doc/example_grid.rst
100644100755 b/‎doc/example_grid.rst
100644100755
diff --git a/‎doc/example_grid_analysis.rst
100644100755 b/‎doc/example_grid_analysis.rst
100644100755
diff --git a/‎doc/example_ham.rst
100644100755 b/‎doc/example_ham.rst
100644100755
diff --git a/‎doc/example_inline_analysis.rst
100644100755 b/‎doc/example_inline_analysis.rst
100644100755
diff --git a/‎doc/example_litdata.rst
100644100755 b/‎doc/example_litdata.rst
100644100755
diff --git a/‎doc/example_mc_sampling.rst
100644100755 b/‎doc/example_mc_sampling.rst
100644100755
diff --git a/‎doc/example_mcmc_I.rst
100644100755 b/‎doc/example_mcmc_I.rst
100644100755
diff --git a/‎doc/example_mcmc_analysis.rst
100644100755 b/‎doc/example_mcmc_analysis.rst
100644100755
diff --git a/‎doc/example_rt06_1.rst
100644100755 b/‎doc/example_rt06_1.rst
100644100755
diff --git a/‎doc/example_rt06_2.rst
100644100755 b/‎doc/example_rt06_2.rst
100644100755
diff --git a/‎doc/example_sedop.rst
100644100755 b/‎doc/example_sedop.rst
100644100755
diff --git a/‎doc/example_star.rst
100644100755 b/‎doc/example_star.rst
100644100755
diff --git a/‎doc/example_tau.rst
100644100755 b/‎doc/example_tau.rst
100644100755
diff --git a/‎doc/examples.rst
100644100755 b/‎doc/examples.rst
100644100755
diff --git a/‎doc/fields.rst
100644100755 b/‎doc/fields.rst
100644100755
diff --git a/‎doc/history.rst
100644100755 b/‎doc/history.rst
100644100755
diff --git a/‎doc/index.rst
100644100755 b/‎doc/index.rst
100644100755
diff --git a/‎doc/inits_tables.rst
100644100755 b/‎doc/inits_tables.rst
100644100755
diff --git a/‎doc/install.rst
100644100755 b/‎doc/install.rst
100644100755
diff --git a/‎doc/methods.rst
100644100755 b/‎doc/methods.rst
100644100755
diff --git a/‎doc/methods_integration.rst
100644100755 b/‎doc/methods_integration.rst
100644100755
diff --git a/‎doc/param_bundles.rst
100644100755 b/‎doc/param_bundles.rst
100644100755
diff --git a/‎doc/params.rst
100644100755 b/‎doc/params.rst
100644100755
diff --git a/‎doc/params_control.rst
100644100755 b/‎doc/params_control.rst
100644100755
diff --git a/‎doc/params_cosmology.rst
100644100755 b/‎doc/params_cosmology.rst
100644100755
diff --git a/‎doc/params_grid.rst
100644100755 b/‎doc/params_grid.rst
100644100755
diff --git a/‎doc/params_hmf.rst
100644100755 b/‎doc/params_hmf.rst
100644100755
diff --git a/‎doc/params_inference.rst
100644100755 b/‎doc/params_inference.rst
100644100755
diff --git a/‎doc/params_physics.rst
100644100755 b/‎doc/params_physics.rst
100644100755
diff --git a/‎doc/params_populations.rst
100644100755 b/‎doc/params_populations.rst
100644100755
diff --git a/‎doc/params_sources.rst
100644100755 b/‎doc/params_sources.rst
100644100755
diff --git a/‎doc/params_spectrum.rst
100644100755 b/‎doc/params_spectrum.rst
100644100755
diff --git a/‎doc/problem_types.rst
100644100755 b/‎doc/problem_types.rst
100644100755
diff --git a/‎doc/requirements.txt
100644100755 b/‎doc/requirements.txt
100644100755
diff --git a/‎doc/scripts/generate_figures.py
100644100755 b/‎doc/scripts/generate_figures.py
100644100755
diff --git a/‎doc/scripts/run_example_crb_lw.py
100644100755 b/‎doc/scripts/run_example_crb_lw.py
100644100755
diff --git a/‎doc/scripts/run_example_crb_uv.py
100644100755 b/‎doc/scripts/run_example_crb_uv.py
100644100755
diff --git a/‎doc/scripts/run_example_crb_xr.py
100644100755 b/‎doc/scripts/run_example_crb_xr.py
100644100755
diff --git a/‎doc/structure.rst
100644100755 b/‎doc/structure.rst
100644100755
diff --git a/‎doc/troubleshooting.rst
100644100755 b/‎doc/troubleshooting.rst
100644100755
diff --git a/‎doc/updates.rst
100644100755 b/‎doc/updates.rst
100644100755
diff --git a/‎doc/uth.rst
100644100755 b/‎doc/uth.rst
100644100755
diff --git a/‎doc/uth_litdata.rst
100644100755 b/‎doc/uth_litdata.rst
100644100755
diff --git a/‎doc/uth_physics_constants.rst
100644100755 b/‎doc/uth_physics_constants.rst
100644100755
diff --git a/‎doc/uth_physics_cosmo.rst
100644100755 b/‎doc/uth_physics_cosmo.rst
100644100755
diff --git a/‎doc/uth_physics_esec.rst
100644100755 b/‎doc/uth_physics_esec.rst
100644100755
diff --git a/‎doc/uth_physics_hydrogen.rst
100644100755 b/‎doc/uth_physics_hydrogen.rst
100644100755
diff --git a/‎doc/uth_physics_rcs.rst
100644100755 b/‎doc/uth_physics_rcs.rst
100644100755
diff --git a/‎doc/uth_pop_bh.rst
100644100755 b/‎doc/uth_pop_bh.rst
100644100755
diff --git a/‎doc/uth_pop_radiation.rst
100644100755 b/‎doc/uth_pop_radiation.rst
100644100755
diff --git a/‎doc/uth_pop_sfrd.rst
100644100755 b/‎doc/uth_pop_sfrd.rst
100644100755
diff --git a/‎doc/uth_pop_stellar.rst
100644100755 b/‎doc/uth_pop_stellar.rst
100644100755
diff --git a/‎doc/uth_solver_chem.rst
100644100755 b/‎doc/uth_solver_chem.rst
100644100755
diff --git a/‎doc/uth_solver_igm.rst
100644100755 b/‎doc/uth_solver_igm.rst
100644100755
diff --git a/‎doc/uth_solver_rt1d.rst
100644100755 b/‎doc/uth_solver_rt1d.rst
100644100755
diff --git a/‎doc/uth_solver_rte.rst
100644100755 b/‎doc/uth_solver_rte.rst
100644100755
diff --git a/‎doc/uth_src.rst
100644100755 b/‎doc/uth_src.rst
100644100755
diff --git a/‎doc/uth_src_bh.rst
100644100755 b/‎doc/uth_src_bh.rst
100644100755
diff --git a/‎doc/uth_src_galaxy.rst
100644100755 b/‎doc/uth_src_galaxy.rst
100644100755
diff --git a/‎doc/uth_src_stellar.rst
100644100755 b/‎doc/uth_src_stellar.rst
100644100755
diff --git a/‎doc/uth_src_toy.rst
100644100755 b/‎doc/uth_src_toy.rst
100644100755
diff --git a/‎examples/fits/test_abundance_matching.py
100644100755 b/‎examples/fits/test_abundance_matching.py
100644100755
diff --git a/‎examples/fits/test_fitting_generic.py
100644100755 b/‎examples/fits/test_fitting_generic.py
100644100755
diff --git a/‎examples/fits/test_fitting_lf.py
100644100755 b/‎examples/fits/test_fitting_lf.py
100644100755
diff --git a/‎examples/fits/test_fitting_tanh.py
100644100755 b/‎examples/fits/test_fitting_tanh.py
100644100755
diff --git a/‎examples/fits/test_fitting_tanh_extrema.py
100644100755 b/‎examples/fits/test_fitting_tanh_extrema.py
100644100755
diff --git a/‎examples/fits/test_modelgrid.py
100644100755 b/‎examples/fits/test_modelgrid.py
100644100755
diff --git a/‎examples/fits/test_optimization_bb_n1.py
100644100755 b/‎examples/fits/test_optimization_bb_n1.py
100644100755
diff --git a/‎examples/fits/test_optimization_bb_n4.py
100644100755 b/‎examples/fits/test_optimization_bb_n4.py
100644100755
diff --git a/‎examples/gs/movie_21cm.py
100644100755 b/‎examples/gs/movie_21cm.py
100644100755
diff --git a/‎examples/gs/test_cuvb.py
100644100755 b/‎examples/gs/test_cuvb.py
100644100755
diff --git a/‎examples/gs/test_cxrb.py
100644100755 b/‎examples/gs/test_cxrb.py
100644100755
diff --git a/‎examples/gs/test_helium.py
100644100755 b/‎examples/gs/test_helium.py
100644100755
diff --git a/‎examples/lit/test_aird2015.py
100644100755 b/‎examples/lit/test_aird2015.py
100644100755
diff --git a/‎examples/lit/test_atek2015.py
100644100755 b/‎examples/lit/test_atek2015.py
100644100755
diff --git a/‎examples/lit/test_bouwens2015.py
100644100755 b/‎examples/lit/test_bouwens2015.py
100644100755
diff --git a/‎examples/lit/test_eldridge2009.py
100644100755 b/‎examples/lit/test_eldridge2009.py
100644100755
diff --git a/‎examples/lit/test_haardt2012.py
100644100755 b/‎examples/lit/test_haardt2012.py
100644100755
diff --git a/‎examples/lit/test_kroupa2001.py
100644100755 b/‎examples/lit/test_kroupa2001.py
100644100755
diff --git a/‎examples/lit/test_leitherer1999.py
100644100755 b/‎examples/lit/test_leitherer1999.py
100644100755
diff --git a/‎examples/lit/test_lf.py
100644100755 b/‎examples/lit/test_lf.py
100644100755
diff --git a/‎examples/lit/test_robertson2015.py
100644100755 b/‎examples/lit/test_robertson2015.py
100644100755
diff --git a/‎examples/lit/test_sazonov2004.py
100644100755 b/‎examples/lit/test_sazonov2004.py
100644100755
diff --git a/‎examples/lit/test_ueda2003.py
100644100755 b/‎examples/lit/test_ueda2003.py
100644100755
diff --git a/‎examples/lit/test_ueda2014.py
100644100755 b/‎examples/lit/test_ueda2014.py
100644100755
diff --git a/‎examples/rt06/test_rt06_00.py
100644100755 b/‎examples/rt06/test_rt06_00.py
100644100755
diff --git a/‎examples/rt06/test_rt06_03.py
100644100755 b/‎examples/rt06/test_rt06_03.py
100644100755
diff --git a/‎examples/rt06/test_rt06_1.py
100644100755 b/‎examples/rt06/test_rt06_1.py
100644100755
diff --git a/‎examples/rt06/test_rt06_2.py
100644100755 b/‎examples/rt06/test_rt06_2.py
100644100755
diff --git a/‎examples/rt06/test_rt06_2_m12.py
100644100755 b/‎examples/rt06/test_rt06_2_m12.py
100644100755
diff --git a/‎examples/rt06/test_rt06_2_w_he.py
100644100755 b/‎examples/rt06/test_rt06_2_w_he.py
100644100755
diff --git a/‎examples/rt06/test_rt06_2_w_he_adv_e.py
100644100755 b/‎examples/rt06/test_rt06_2_w_he_adv_e.py
100644100755
diff --git a/‎examples/rt06/test_rt06_3.py
100644100755 b/‎examples/rt06/test_rt06_3.py
100644100755
diff --git a/‎examples/sources/test_sed_agn.py
100644100755 b/‎examples/sources/test_sed_agn.py
100644100755
diff --git a/‎examples/sources/test_sed_apl.py
100644100755 b/‎examples/sources/test_sed_apl.py
100644100755
diff --git a/‎examples/sources/test_sed_bb.py
100644100755 b/‎examples/sources/test_sed_bb.py
100644100755
diff --git a/‎examples/sources/test_sed_mcd.py
100644100755 b/‎examples/sources/test_sed_mcd.py
100644100755
diff --git a/‎examples/sources/test_sed_parameterized.py
100644100755 b/‎examples/sources/test_sed_parameterized.py
100644100755
diff --git a/‎examples/sources/test_sed_pl.py
100644100755 b/‎examples/sources/test_sed_pl.py
100644100755
diff --git a/‎examples/sources/test_sed_simpl.py
100644100755 b/‎examples/sources/test_sed_simpl.py
100644100755
diff --git a/‎examples/sources/test_sed_zebra.py
100644100755 b/‎examples/sources/test_sed_zebra.py
100644100755
diff --git a/‎examples/sources/test_src_bh.py
100644100755 b/‎examples/sources/test_src_bh.py
100644100755
diff --git a/‎examples/sources/test_src_star.py
100644100755 b/‎examples/sources/test_src_star.py
100644100755
diff --git a/‎input/hmf/generate_hmf_tables.py
100644100755 b/‎input/hmf/generate_hmf_tables.py
100644100755
diff --git a/‎input/inits/run_CosmoRec.py
100644100755 b/‎input/inits/run_CosmoRec.py
100644100755
diff --git a/‎input/litdata/aird2015.py
100644100755 b/‎input/litdata/aird2015.py
100644100755
diff --git a/‎input/litdata/atek2015.py
100644100755 b/‎input/litdata/atek2015.py
100644100755
diff --git a/‎input/litdata/bouwens2015.py
100644100755 b/‎input/litdata/bouwens2015.py
100644100755
diff --git a/‎input/litdata/eldridge2009.py
100644100755 b/‎input/litdata/eldridge2009.py
100644100755
diff --git a/‎input/litdata/finkelstein2015.py
100644100755 b/‎input/litdata/finkelstein2015.py
100644100755
diff --git a/‎input/litdata/haardt2012.py
100644100755 b/‎input/litdata/haardt2012.py
100644100755
diff --git a/‎input/litdata/kroupa2001.py
100644100755 b/‎input/litdata/kroupa2001.py
100644100755
diff --git a/‎input/litdata/leitherer1999.py
100644100755 b/‎input/litdata/leitherer1999.py
100644100755
diff --git a/‎input/litdata/madau2014.py
100644100755 b/‎input/litdata/madau2014.py
100644100755
diff --git a/‎input/litdata/mcbride2009.py
100644100755 b/‎input/litdata/mcbride2009.py
100644100755
diff --git a/‎input/litdata/mirocha2016.py
100644100755 b/‎input/litdata/mirocha2016.py
100644100755
diff --git a/‎input/litdata/oesch2013.py
100644100755 b/‎input/litdata/oesch2013.py
100644100755
diff --git a/‎input/litdata/oesch2014.py
100644100755 b/‎input/litdata/oesch2014.py
100644100755
diff --git a/‎input/litdata/oesch2016.py
100644100755 b/‎input/litdata/oesch2016.py
100644100755
diff --git a/‎input/litdata/parsa2016.py
100644100755 b/‎input/litdata/parsa2016.py
100644100755
diff --git a/‎input/litdata/robertson2015.py
100644100755 b/‎input/litdata/robertson2015.py
100644100755
diff --git a/‎input/litdata/sazonov2004.py
100644100755 b/‎input/litdata/sazonov2004.py
100644100755
diff --git a/‎input/litdata/ueda2003.py
100644100755 b/‎input/litdata/ueda2003.py
100644100755
diff --git a/‎input/litdata/ueda2014.py
100644100755 b/‎input/litdata/ueda2014.py
100644100755
diff --git a/‎input/optical_depth/generate_optical_depth_tables.py
100644100755 b/‎input/optical_depth/generate_optical_depth_tables.py
100644100755
diff --git a/‎input/rctabs/generate_rc_table.py
100644100755 b/‎input/rctabs/generate_rc_table.py
100644100755
diff --git a/‎input/secondary_electrons/read_FJS10.py
100644100755 b/‎input/secondary_electrons/read_FJS10.py
100644100755
diff --git a/‎perf/README
100644100755 b/‎perf/README
100644100755
diff --git a/‎perf/test_tabulation_speed_H.py
100644100755 b/‎perf/test_tabulation_speed_H.py
100644100755
diff --git a/‎perf/test_tabulation_speed_He.py
100644100755 b/‎perf/test_tabulation_speed_He.py
100644100755
diff --git a/‎remote.py
100644100755 b/‎remote.py
100644100755
diff --git a/‎setup.py
100644100755 b/‎setup.py
100644100755
diff --git a/‎tests/adv/README
100644100755 b/‎tests/adv/README
100644100755
diff --git a/‎tests/adv/test_gs_4par.py
100644100755 b/‎tests/adv/test_gs_4par.py
100644100755
diff --git a/‎tests/adv/test_gs_crt.py
100644100755 b/‎tests/adv/test_gs_crt.py
100644100755
diff --git a/‎tests/adv/test_gs_fcoll.py
100644100755 b/‎tests/adv/test_gs_fcoll.py
100644100755
diff --git a/‎tests/adv/test_physics_hmf.py
100644100755 b/‎tests/adv/test_physics_hmf.py
100644100755
diff --git a/‎tests/adv/test_pop_galaxy.py
100644100755 b/‎tests/adv/test_pop_galaxy.py
100644100755
diff --git a/‎tests/adv/test_priors.py
100644100755 b/‎tests/adv/test_priors.py
100644100755
diff --git a/‎tests/adv/test_priorset.py
100644100755 b/‎tests/adv/test_priorset.py
100644100755
diff --git a/‎tests/adv/test_setup_pbundles.py
100644100755 b/‎tests/adv/test_setup_pbundles.py
100644100755
diff --git a/‎tests/adv/test_solver_chem_he.py
100644100755 b/‎tests/adv/test_solver_chem_he.py
100644100755
diff --git a/‎tests/adv/test_solver_crt_xrb.py
100644100755 b/‎tests/adv/test_solver_crt_xrb.py
100644100755
diff --git a/‎tests/adv/test_src_bpass.py
100644100755 b/‎tests/adv/test_src_bpass.py
100644100755
diff --git a/‎tests/broken/test_cxrb_helium.py
100644100755 b/‎tests/broken/test_cxrb_helium.py
100644100755
diff --git a/‎tests/broken/test_cxrb_mcd.py
100644100755 b/‎tests/broken/test_cxrb_mcd.py
100644100755
diff --git a/‎tests/broken/test_generator_uvb_qso.py
100644100755 b/‎tests/broken/test_generator_uvb_qso.py
100644100755
diff --git a/‎tests/broken/test_gs_param_rates.py
100644100755 b/‎tests/broken/test_gs_param_rates.py
100644100755
diff --git a/‎tests/broken/test_inline_tau.py
100644100755 b/‎tests/broken/test_inline_tau.py
100644100755
diff --git a/‎tests/broken/test_mpm.py
100644100755 b/‎tests/broken/test_mpm.py
100644100755
diff --git a/‎tests/broken/test_mpm_w_mgb.py
100644100755 b/‎tests/broken/test_mpm_w_mgb.py
100644100755
diff --git a/‎tests/broken/test_patch_cgm.py
100644100755 b/‎tests/broken/test_patch_cgm.py
100644100755
diff --git a/‎tests/broken/test_patch_igm.py
100644100755 b/‎tests/broken/test_patch_igm.py
100644100755
diff --git a/‎tests/broken/test_patch_igm_analytic.py
100644100755 b/‎tests/broken/test_patch_igm_analytic.py
100644100755
diff --git a/‎tests/broken/test_tau_dynamic.py
100644100755 b/‎tests/broken/test_tau_dynamic.py
100644100755
diff --git a/‎tests/test_analysis_blobs.py
100644100755 b/‎tests/test_analysis_blobs.py
100644100755
diff --git a/‎tests/test_gs_extrema_finder.py
100644100755 b/‎tests/test_gs_extrema_finder.py
100644100755
diff --git a/‎tests/test_gs_param_hist.py
100644100755 b/‎tests/test_gs_param_hist.py
100644100755
diff --git a/‎tests/test_gs_phenom.py
100644100755 b/‎tests/test_gs_phenom.py
100644100755
diff --git a/‎tests/test_phps_mlf.py
100644100755 b/‎tests/test_phps_mlf.py
100644100755
diff --git a/‎tests/test_phps_sfe.py
100644100755 b/‎tests/test_phps_sfe.py
100644100755
diff --git a/‎tests/test_physics_HI_cc.py
100644100755 b/‎tests/test_physics_HI_cc.py
100644100755
diff --git a/‎tests/test_physics_HI_wf.py
100644100755 b/‎tests/test_physics_HI_wf.py
100644100755
diff --git a/‎tests/test_physics_cosm.py
100644100755 b/‎tests/test_physics_cosm.py
100644100755
diff --git a/‎tests/test_physics_elec.py
100644100755 b/‎tests/test_physics_elec.py
100644100755
diff --git a/‎tests/test_physics_rcoeff.py
100644100755 b/‎tests/test_physics_rcoeff.py
100644100755
diff --git a/‎tests/test_physics_xsec.py
100644100755 b/‎tests/test_physics_xsec.py
100644100755
diff --git a/‎tests/test_solver_chem_h.py
100644100755 b/‎tests/test_solver_chem_h.py
100644100755
diff --git a/‎tests/test_solver_crt_tau.py
100644100755 b/‎tests/test_solver_crt_tau.py
100644100755
diff --git a/‎tests/test_solver_crt_uvb.py
100644100755 b/‎tests/test_solver_crt_uvb.py
100644100755
diff --git a/‎tests/test_solver_crt_xrb.py
100644100755 b/‎tests/test_solver_crt_xrb.py
100644100755
diff --git a/‎tests/test_solver_rt_const_flux.py
100644100755 b/‎tests/test_solver_rt_const_flux.py
100644100755
diff --git a/‎tests/test_solver_rt_const_ioniz.py
100644100755 b/‎tests/test_solver_rt_const_ioniz.py
100644100755
@@ -700,7 +700,6 @@ def _saved_checkpoint_chain_files(self, prefix):
     def _saved_checkpoints(self, prefix):
         ans = [int(fn[-14:-10])\
             for fn in self._saved_checkpoint_chain_files(prefix)]
-        print ans
         return ans
 
 
@@ -750,11 +749,13 @@ def _prep_from_scratch(self, clobber, by_proc=False):
 
             os.system('rm -f %s.*.fail.pkl' % self.prefix)
             os.system('rm -f %s.*.chain.*pkl' % self.prefix)
+            os.system('rm -f %s.*.logL.*pkl' % self.prefix)
             os.system('rm -f %s.*.blob*.*pkl' % self.prefix)
 
             # Need to potentially axe a product file
             os.system('rm -f %s.fails.pkl' % self.prefix)
             os.system('rm -f %s.chain.pkl' % self.prefix)
+            os.system('rm -f %s.rstate.pkl' % self.prefix)
 
         # Each processor gets its own fail file
         f = open('%s.fail.pkl' % prefix_by_proc, 'wb')
@@ -913,8 +914,12 @@ def run(self, prefix, steps=1e2, burn=0, clobber=False, restart=False,
         elif not restart:
             pos = self.guesses
             state = None
+        elif os.path.exists('%s.rstate.pkl' % (prefix,)):
+            f = open('%s.rstate.pkl' % (prefix,), 'rb')
+            state = pickle.load(f)
+            f.close()
         else:
-            state = None # should this be saved and restarted?
+            state = None
 
         #
         ## MAIN CALCULATION BELOW
@@ -986,6 +991,12 @@ def run(self, prefix, steps=1e2, burn=0, clobber=False, restart=False,
             pickle.dump(self.sampler.acceptance_fraction, f)
             f.close()
 
+            ####################################
+            f = open('%s.rstate.pkl' % prefix, 'wb')
+            pickle.dump(state, f)
+            f.close()
+            ####################################
+
             print "Checkpoint #%i: %s" % (ct / save_freq, time.ctime())
 
             del data, pos_all, prob_all, blobs_all