create models dir in correct location from children subdir #216
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # running Windows and Mac with --no-examples to avoid spurious Stan crashes in examples | |
| - {os: windows-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
| - {os: macOS-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
| # running Mac without --as-cran and with --no-build-vignettes only to check that purl'd code from vignettes is runnable (#328) | |
| - {os: macOS-latest, r: 'release', suffix: 'purl', not_cran: 'true', check_options: '"--no-build-vignettes"'} | |
| # full checks on linux | |
| - {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', check_options: '"--as-cran"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', check_options: '"--as-cran"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| # quick checks on linux | |
| - {os: ubuntu-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel-1', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel-2', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel-3', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-latest, r: 'oldrel-4', suffix: 'quick', not_cran: 'false', check_options: '"--as-cran", "--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "install.packages('pak')" | |
| sysreqs=$(Rscript -e "cat(tryCatch(pak::pkg_sysreqs('.', dependencies = TRUE), error = function(e) pak::pkg_sysreqs('.'))[['install_scripts']])") | |
| sudo -s eval "$sysreqs" | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| NOT_CRAN: ${{ matrix.config.not_cran }} | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", ${{ matrix.config.check_options }}), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.r == 'release' && runner.os == 'Linux' && matrix.config.suffix == 'quick' | |
| run: covr::codecov() | |
| shell: Rscript {0} |