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more ci fixes

more ci fixes #194

Workflow file for this run

on:
push:
branches:
- '*'
pull_request:
branches:
- master
- dev
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }}
strategy:
fail-fast: false
matrix:
config:
# running Windows and Mac with --no-examples to avoid spurious Stan crashes in examples
- {os: windows-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'}
- {os: macOS-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'}
- {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-latest, r: 'oldrel', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-latest, r: '4.1', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-latest, r: '4.0', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-latest, r: '3.6', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
_R_CHECK_FORCE_SUGGESTS_: false
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::rcmdcheck
any::BH
any::RcppEigen
emmeans=?ignore-before-r=4.3.0
needs: check
# - name: Install system dependencies
# if: runner.os == 'Linux'
# env:
# RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
# run: |
# Rscript -e "remotes::install_github('r-hub/sysreqs')"
# sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
# sudo -s eval "$sysreqs"
# sudo apt-get install jags cargo libudunits2-dev libgdal-dev
# cargo: for gifski
# libudunits2-dev for units (transformr)
# libgdal-dev for sf (transformr)
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
NOT_CRAN: ${{ matrix.config.not_cran }}
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", ${{ matrix.config.check_options }}), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v3
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Test coverage
if: matrix.config.r == 'release' && runner.os == 'Linux' && matrix.config.suffix == 'quick'
run: covr::codecov()
shell: Rscript {0}