more ci fixes #194
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on: | |
push: | |
branches: | |
- '*' | |
pull_request: | |
branches: | |
- master | |
- dev | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
# running Windows and Mac with --no-examples to avoid spurious Stan crashes in examples | |
- {os: windows-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
- {os: macOS-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes", "--no-examples"'} | |
- {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: 'release'} | |
- {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', check_options: 'NULL', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
- {os: ubuntu-latest, r: 'release', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
- {os: ubuntu-latest, r: 'oldrel', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
- {os: ubuntu-latest, r: '4.1', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
- {os: ubuntu-latest, r: '4.0', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
- {os: ubuntu-latest, r: '3.6', suffix: 'quick', not_cran: 'false', check_options: '"--no-build-vignettes", "--ignore-vignettes"', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
_R_CHECK_FORCE_SUGGESTS_: false | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: | | |
any::rcmdcheck | |
any::BH | |
any::RcppEigen | |
emmeans=?ignore-before-r=4.3.0 | |
needs: check | |
# - name: Install system dependencies | |
# if: runner.os == 'Linux' | |
# env: | |
# RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
# run: | | |
# Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
# sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
# sudo -s eval "$sysreqs" | |
# sudo apt-get install jags cargo libudunits2-dev libgdal-dev | |
# cargo: for gifski | |
# libudunits2-dev for units (transformr) | |
# libgdal-dev for sf (transformr) | |
- name: Check | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
NOT_CRAN: ${{ matrix.config.not_cran }} | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", ${{ matrix.config.check_options }}), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check | |
- name: Test coverage | |
if: matrix.config.r == 'release' && runner.os == 'Linux' && matrix.config.suffix == 'quick' | |
run: covr::codecov() | |
shell: Rscript {0} |