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setup.py
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#!/usr/bin/env python
#-----------------------------------------------------------------------------
# Copyright (c) 2011-2013, The BIOM Format Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
#-----------------------------------------------------------------------------
from distutils.core import setup
from glob import glob
__author__ = "Daniel McDonald"
__copyright__ = "Copyright 2011-2013, The BIOM Format Development Team"
__credits__ = ["Greg Caporaso", "Daniel McDonald", "Jose Clemente",
"Jai Ram Rideout"]
__license__ = "BSD"
__version__ = "1.2.0-dev"
__maintainer__ = "Daniel McDonald"
__email__ = "[email protected]"
long_description = """BIOM: Biological Observation Matrix
http://www.biom-format.org
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Ram Rideout, Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle, Folker Meyer, Rob Knight, J Gregory Caporaso
GigaScience 2012, 1:7.
"""
classes = """
Development Status :: 4 - Beta
License :: OSI Approved :: BSD License
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Software Development :: Libraries :: Application Frameworks
Topic :: Software Development :: Libraries :: Python Modules
Programming Language :: Python
Programming Language :: Python :: 2.7
Programming Language :: Python :: Implementation :: CPython
Operating System :: OS Independent
Operating System :: POSIX :: Linux
Operating System :: MacOS :: MacOS X
"""
classifiers = [s.strip() for s in classes.split('\n') if s]
setup(name='biom-format',
version=__version__,
description='Biological Observation Matrix (BIOM) format',
long_description=long_description,
license=__license__,
author=__maintainer__,
author_email=__email__,
maintainer=__maintainer__,
maintainer_email=__email__,
url='http://www.biom-format.org',
packages=['biom',
'biom/backends',
'biom/commands',
'biom/interfaces',
'biom/interfaces/optparse',
'biom/interfaces/optparse/config'
],
scripts=glob('scripts/*'),
install_requires=["numpy >= 1.3.0",
"pyqi == 0.3.1"],
extras_require={'scipy_sparse':["scipy >= 0.9.0"],
'test':["nose >= 0.10.1",
"tox >= 1.6.1"],
'validator':['dateutil >= 2.1']
},
classifiers=classifiers
)