Representation parameters

[nezix]

Hello !

• Is there a way to specify representation parameters ? For example, it would be nice to define the quality of the surface or the transparency of a cartoon ?

• Same for coloring, is there a way to have color schemes ?

[sbittrich]

Hi @nezix,

Is there a way to specify representation parameters ?

Not yet but transparency and other more specialized params are planned for the future.

Same for coloring, is there a way to have color schemes ?

Applying coloring schemes by name would be possible but the vision for MolViewSpec is to be viewer agnostic and not strictly tied to Mol*, so we would like to avoid that at this point in time.
You can "emulate" color themes by selecting relevant atoms/residues/chains and then assign the corresponding color but you'll need to do so for every single items and/or color.

[nezix]

Thanks for the reply !
I forgot to mention licorice, vdw, wire and all kinds of atomistic representations. Is this something planned and compatible with the viewer agnostic approach ?