From 157fd847ea35107f9f9a17f564f92580439d901d Mon Sep 17 00:00:00 2001
From: Christian Huyck <c.huyck@mdx.ac.uk>
Date: Fri, 26 Sep 2014 17:00:01 +0100
Subject: [PATCH] Create visionMain.py

---
 snvis/visionMain.py | 99 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 99 insertions(+)
 create mode 100644 snvis/visionMain.py

diff --git a/snvis/visionMain.py b/snvis/visionMain.py
new file mode 100644
index 0000000..7832e90
--- /dev/null
+++ b/snvis/visionMain.py
@@ -0,0 +1,99 @@
+"""
+The stub for  vision.  
+"""
+
+#imports for PyNN
+from pyNN.utility import get_script_args, normalized_filename
+from neo.io import PyNNTextIO
+
+#imports for image reading
+from PIL import Image
+
+#NEAL files and functions
+from nealParams import *
+from visionClass import visionArea
+
+
+#------Image Stuff
+def openImageFile():
+    try: 
+        #im = Image.open("../data/lStal1.jpg")  
+        im = Image.open("../data/rPyr1.jpg")  
+        #im = Image.open("../data/rStal1.jpg")  
+        #im = Image.open("../data/lPyr1.jpg")  
+    except:
+        print "fail to open image"
+
+    im = im.crop((0,0,600,600))
+    #print im.size
+
+    #shrink it
+    size = (INPSIZE,INPSIZE)
+    im.thumbnail(size)
+
+    #get the pixels
+    pixels = im.load()
+
+    ##convert rgb to grey scale
+    inputMatrix = numpy.zeros((50,50))
+    for inpRow in range (0,50):
+        for inpCol in range (0,50):
+            rgb = pixels[inpCol,inpRow]
+            for i in range (0,3):
+                inputMatrix[inpCol,inpRow] += rgb[i]
+                inputMatrix[inpCol,inpRow]/=3
+        
+    ##set result image array
+    resultImage = numpy.zeros((50,50))
+    THRESHOLD = 50
+    resultImageArray = []
+    for outRow in range (0,50):
+        for outColumn in range (0,50):
+            if inputMatrix[outColumn,outRow] < THRESHOLD :
+                #print outRow, outColumn
+                pixelOn = (outRow*INPSIZE)+outColumn
+                resultImageArray = resultImageArray + [pixelOn]
+
+    return resultImageArray
+        
+#------------Main Body---------------
+simulator_name = get_script_args(1)[0]  
+exec("from pyNN.%s import *" % simulator_name)
+
+setup(timestep=DELAY,min_delay=DELAY,max_delay=DELAY,db_name='if_cond.sqlite')
+
+#----------------create neurons
+vision = visionArea(simulator_name)
+vision.allocateVisionNeurons()
+    
+#---------setup connections
+vision.makeVisionSynapses()
+
+#-------------------setup recording
+vision.setVisionRecording()
+
+#open image file
+imagePixels = openImageFile()
+#print imagePixels
+
+#turn on the inputs
+#set up clamped input from image
+cell_params = {'tau_refrac' : 3.0, 'v_rest' : -65.0,
+               'v_thresh' : -51.0,  'tau_syn_E'  : 2.0, 
+               'tau_syn_I': 5.0,    'v_reset'    : -70.0, 
+               'i_offset' : 0.1}
+
+spikeTimes = [[i for i in range(7,int(SIM_LENGTH),5)],]
+inputSource = Population(1, SpikeSourceArray, {'spike_times': spikeTimes})
+
+#consider   One off won't run twice.
+vision.setInput(imagePixels,inputSource)
+
+run(SIM_LENGTH)
+
+#--------------print results
+
+vision.printVisionNets()
+
+end()
+